AlfalfaGEDB | Msa1075960

M. sativa cultivar zhongmu-4 / Msa1075960

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075960	XP_013449826.1	96.552	87	3	0	4	90	221	307	1.51e-50	171

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075960	sp\|L7WRZ7\|NOTR_ASPVE	40.506	79	45	1	2	78	74	152	1.24e-13	65.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075960	A0A072U2E0	96.552	87	3	0	4	90	221	307	7.22e-51	171

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0224320	Msa1075960	0.801943	7.091200e-49	-8.615850e-47
Msa0317510	Msa1075960	0.800940	1.138669e-48	-8.615850e-47
Msa0484780	Msa1075960	0.803613	3.206506e-49	-8.615850e-47
Msa0693380	Msa1075960	0.811195	7.904597e-51	-8.615850e-47
Msa1014540	Msa1075960	0.806884	6.621443e-50	-8.615850e-47
Msa1075960	Msa1082500	0.825693	4.078872e-54	-8.615850e-47
Msa1075960	Msa1131220	0.814058	1.869524e-51	-8.615850e-47
Msa1075960	Msa1320620	0.804976	1.668218e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075960	MtrunA17_Chr7g0260651	96.552	87	3	4	90	221	307	1.39e-54	171
Msa1075960	MtrunA17_Chr8g0365331	91.566	83	7	8	90	22	104	1.48e-49	152
Msa1075960	MtrunA17_Chr4g0038811	97.015	67	2	24	90	223	289	4.70e-39	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1075960	AT1G03030.1	66.279	86	29	0	4	89	215	300	2.01e-38	130
Msa1075960	AT1G03030.2	68.852	61	19	0	4	64	215	275	1.33e-27	101

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Find 42 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCATCTTGTCTCCTT+TGG	0.387592	7_2:+74365043	Msa1075960:three_prime_UTR
AACTATTTGCTCTTGGAAGA+TGG	0.393419	7_2:+74362973	Msa1075960:CDS
AAGAAATGGCCATCATGAAG+GGG	0.649135	7_2:+74362445	None:intergenic
AAGTCAAGCCTAAATGTGCA+AGG	0.575418	7_2:+74364473	Msa1075960:three_prime_UTR
ACTATTTGCTCTTGGAAGAT+GGG	0.480636	7_2:+74362974	Msa1075960:CDS
ACTCGCTGCTTAGCAATGTC+TGG	0.442166	7_2:-74364146	None:intergenic
AGAAGGCAACTATTTGCTCT+TGG	0.443334	7_2:+74362966	Msa1075960:CDS
AGATACCAAAGGAGACAAGA+TGG	0.633479	7_2:-74365048	None:intergenic
AGTCAAGCCTAAATGTGCAA+GGG	0.661409	7_2:+74364474	Msa1075960:three_prime_UTR
ATATATCACATTTCTCTGAT+AGG	0.354031	7_2:+74365327	Msa1075960:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTATCTTAAAACCTTTGCA+AGG	+	chr7_2:74362533-74362552	Msa1075960:intron	30.0%
CATCTAATATTAGAGTAGGT+TGG	-	chr7_2:74362559-74362578	None:intergenic	30.0%
CTCACATCTAATATTAGAGT+AGG	-	chr7_2:74362563-74362582	None:intergenic	30.0%
TGTTTGATGAGAAATGGTAT+TGG	+	chr7_2:74363019-74363038	Msa1075960:intron	30.0%
GACAACTTTCAAAACTTTCA+AGG	-	chr7_2:74363081-74363100	None:intergenic	30.0%
AGCTAATTATCATCTGAATG+CGG	-	chr7_2:74363195-74363214	None:intergenic	30.0%
CTAATGTATGGACATCAATT+AGG	-	chr7_2:74363534-74363553	None:intergenic	30.0%
CTAATTGATGTCCATACATT+AGG	+	chr7_2:74363532-74363551	Msa1075960:intron	30.0%
CAACAAATAGTGAACTACAA+AGG	-	chr7_2:74363631-74363650	None:intergenic	30.0%
ATTTCTATTCCTGGACAATA+TGG	+	chr7_2:74363677-74363696	Msa1075960:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	74362459	74365363	74362459	ID=Msa1075960;Name=Msa1075960
chr7_2	mRNA	74362459	74365363	74362459	ID=Msa1075960-mRNA-1;Parent=Msa1075960;Name=Msa1075960-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0.6\|0.5\|0.83\|0.4\|0.33\|6\|409\|90
chr7_2	exon	74362459	74362466	74362459	ID=Msa1075960-mRNA-1:exon:17466;Parent=Msa1075960-mRNA-1
chr7_2	exon	74362948	74363034	74362948	ID=Msa1075960-mRNA-1:exon:17467;Parent=Msa1075960-mRNA-1
chr7_2	exon	74363970	74364031	74363970	ID=Msa1075960-mRNA-1:exon:17468;Parent=Msa1075960-mRNA-1
chr7_2	exon	74364138	74364166	74364138	ID=Msa1075960-mRNA-1:exon:17469;Parent=Msa1075960-mRNA-1
chr7_2	exon	74364370	74364498	74364370	ID=Msa1075960-mRNA-1:exon:17470;Parent=Msa1075960-mRNA-1
chr7_2	exon	74364997	74365363	74364997	ID=Msa1075960-mRNA-1:exon:17471;Parent=Msa1075960-mRNA-1
chr7_2	CDS	74362459	74362466	74362459	ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1
chr7_2	CDS	74362948	74363034	74362948	ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1
chr7_2	CDS	74363970	74364031	74363970	ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1
chr7_2	CDS	74364138	74364166	74364138	ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1
chr7_2	CDS	74364370	74364456	74364370	ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1
chr7_2	three_prime_UTR	74364457	74364498	74364457	ID=Msa1075960-mRNA-1:three_prime_utr;Parent=Msa1075960-mRNA-1
chr7_2	three_prime_UTR	74364997	74365363	74364997	ID=Msa1075960-mRNA-1:three_prime_utr;Parent=Msa1075960-mRNA-1

Gene Sequence	>Msa1075960 ATGAAGGGACACAAAATCATTATTGTAGAAGGCAACTATTTGCTCTTGGAAGATGGGGTATGGAAGGAGATTTCATCTTTGTTTGATGAGAAATGGTTTATTTATATAGATATCGACAAAGCAATGCAGCGAGTTTTGAAGAGGCATATCTCTACTGGCAAGCCTCCAGACATTGCTAAGCAGCGAATAGAGAACAGCGACAGACTCAATGCAGAACTTATAATGAAGTCCAAGAAAAATGCTGATATAATAATCAAGTCGGTTGATTTCTGA
Protein sequence	>Msa1075960 MKGHKIIIVEGNYLLLEDGVWKEISSLFDEKWFIYIDIDKAMQRVLKRHISTGKPPDIAKQRIENSDRLNAELIMKSKKNADIIIKSVDF*