Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075960 | XP_013449826.1 | 96.552 | 87 | 3 | 0 | 4 | 90 | 221 | 307 | 1.51e-50 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075960 | sp|L7WRZ7|NOTR_ASPVE | 40.506 | 79 | 45 | 1 | 2 | 78 | 74 | 152 | 1.24e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075960 | A0A072U2E0 | 96.552 | 87 | 3 | 0 | 4 | 90 | 221 | 307 | 7.22e-51 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693380 | Msa1075960 | 0.811195 | 7.904597e-51 | -8.615850e-47 |
| Msa0224320 | Msa1075960 | 0.801943 | 7.091200e-49 | -8.615850e-47 |
| Msa1014540 | Msa1075960 | 0.806884 | 6.621443e-50 | -8.615850e-47 |
| Msa1075960 | Msa1082500 | 0.825693 | 4.078872e-54 | -8.615850e-47 |
| Msa1075960 | Msa1131220 | 0.814058 | 1.869524e-51 | -8.615850e-47 |
| Msa1075960 | Msa1320620 | 0.804976 | 1.668218e-49 | -8.615850e-47 |
| Msa0317510 | Msa1075960 | 0.800940 | 1.138669e-48 | -8.615850e-47 |
| Msa0484780 | Msa1075960 | 0.803613 | 3.206506e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075960 | MtrunA17_Chr7g0260651 | 96.552 | 87 | 3 | 0 | 4 | 90 | 221 | 307 | 1.39e-54 | 171 |
| Msa1075960 | MtrunA17_Chr8g0365331 | 91.566 | 83 | 7 | 0 | 8 | 90 | 22 | 104 | 1.48e-49 | 152 |
| Msa1075960 | MtrunA17_Chr4g0038811 | 97.015 | 67 | 2 | 0 | 24 | 90 | 223 | 289 | 4.70e-39 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1075960 | AT1G03030.1 | 66.279 | 86 | 29 | 0 | 4 | 89 | 215 | 300 | 2.01e-38 | 130 |
| Msa1075960 | AT1G03030.2 | 68.852 | 61 | 19 | 0 | 4 | 64 | 215 | 275 | 1.33e-27 | 101 |
Find 42 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGTAGTGGAAGGTTATT+TGG | 0.188176 | 7_2:+74364989 | Msa1075960:intron |
| TGGTATCTGTCTTGCTCTGC+TGG | 0.243990 | 7_2:+74365063 | Msa1075960:three_prime_UTR |
| CTCTGATAGGTTGTGATAAC+TGG | 0.284498 | 7_2:+74365340 | Msa1075960:three_prime_UTR |
| CTTACTTCCCTTGCACATTT+AGG | 0.299100 | 7_2:-74364481 | None:intergenic |
| GTGGAAGGTTATTTGGAATC+TGG | 0.301256 | 7_2:+74364996 | Msa1075960:intron |
| TCAATCAAGTGCTGATCTTA+AGG | 0.337305 | 7_2:-74365171 | None:intergenic |
| CACAAAATCATTATTGTAGA+AGG | 0.351689 | 7_2:+74362949 | Msa1075960:CDS |
| ATATATCACATTTCTCTGAT+AGG | 0.354031 | 7_2:+74365327 | Msa1075960:three_prime_UTR |
| CTAACATTGAACATTTATTT+CGG | 0.356454 | 7_2:-74365304 | None:intergenic |
| CATCTTTGTTTGATGAGAAA+TGG | 0.359249 | 7_2:+74363013 | Msa1075960:CDS |
| AAACACCATCTTGTCTCCTT+TGG | 0.387592 | 7_2:+74365043 | Msa1075960:three_prime_UTR |
| AACTATTTGCTCTTGGAAGA+TGG | 0.393419 | 7_2:+74362973 | Msa1075960:CDS |
| GGCTATCACATTTATTCCGT+TGG | 0.415863 | 7_2:+74365116 | Msa1075960:three_prime_UTR |
| CACTTGATTGAAATTATGTC+TGG | 0.418714 | 7_2:+74365183 | Msa1075960:three_prime_UTR |
| GGTTGTTGTCTTCATTAGTA+AGG | 0.423193 | 7_2:+74365225 | Msa1075960:three_prime_UTR |
| TGGAAGGTTATTTGGAATCT+GGG | 0.441853 | 7_2:+74364997 | Msa1075960:three_prime_UTR |
| ACTCGCTGCTTAGCAATGTC+TGG | 0.442166 | 7_2:-74364146 | None:intergenic |
| AGAAGGCAACTATTTGCTCT+TGG | 0.443334 | 7_2:+74362966 | Msa1075960:CDS |
| GGGAAGAAAATTGCATCCCT+TGG | 0.457424 | 7_2:+74365084 | Msa1075960:three_prime_UTR |
| TTGAAGAGGCATATCTCTAC+TGG | 0.461066 | 7_2:+74364010 | Msa1075960:CDS |
| GGTATCTGTCTTGCTCTGCT+GGG | 0.478307 | 7_2:+74365064 | Msa1075960:three_prime_UTR |
| ACTATTTGCTCTTGGAAGAT+GGG | 0.480636 | 7_2:+74362974 | Msa1075960:CDS |
| TGCATCCCTTGGATCATAAG+AGG | 0.486342 | 7_2:+74365095 | Msa1075960:three_prime_UTR |
| TGCTCTTGGAAGATGGGGTA+TGG | 0.492424 | 7_2:+74362980 | Msa1075960:CDS |
| GACAAGATGGTGTTTATGCC+AGG | 0.525433 | 7_2:-74365035 | None:intergenic |
| GAAGAAATGGCCATCATGAA+GGG | 0.540361 | 7_2:+74362444 | None:intergenic |
| TGATAGCCTCTTATGATCCA+AGG | 0.546743 | 7_2:-74365101 | None:intergenic |
| CTATTTGCTCTTGGAAGATG+GGG | 0.565803 | 7_2:+74362975 | Msa1075960:CDS |
| ATCAAGTCGGTTGATTTCTG+AGG | 0.567026 | 7_2:+74364436 | Msa1075960:CDS |
| CTTGGAAGATGGGGTATGGA+AGG | 0.567656 | 7_2:+74362984 | Msa1075960:CDS |
| TGCTGATATAATAATCAAGT+CGG | 0.570545 | 7_2:+74364423 | Msa1075960:CDS |
| AAGTCAAGCCTAAATGTGCA+AGG | 0.575418 | 7_2:+74364473 | Msa1075960:three_prime_UTR |
| CGCTGCTTAGCAATGTCTGG+AGG | 0.604926 | 7_2:-74364143 | None:intergenic |
| GATAGCCTCTTATGATCCAA+GGG | 0.612397 | 7_2:-74365100 | None:intergenic |
| TAATGAAGACAACAACCACT+AGG | 0.623390 | 7_2:-74365219 | None:intergenic |
| TGATAGGTTGTGATAACTGG+TGG | 0.630598 | 7_2:+74365343 | Msa1075960:three_prime_UTR |
| CAGAGCAAGACAGATACCAA+AGG | 0.631142 | 7_2:-74365059 | None:intergenic |
| AGATACCAAAGGAGACAAGA+TGG | 0.633479 | 7_2:-74365048 | None:intergenic |
| AAGAAATGGCCATCATGAAG+GGG | 0.649135 | 7_2:+74362445 | None:intergenic |
| AGTCAAGCCTAAATGTGCAA+GGG | 0.661409 | 7_2:+74364474 | Msa1075960:three_prime_UTR |
| CAAGTGCTGATCTTAAGGAG+CGG | 0.686837 | 7_2:-74365166 | None:intergenic |
| GGAAAAGCACAAAATCCTAG+TGG | 0.704895 | 7_2:+74365204 | Msa1075960:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGACATAATTTTAA+TGG | - | chr7_2:74362495-74362514 | None:intergenic | 10.0% |
| !!! | TAATTTTAATGGTAAAAATC+TGG | - | chr7_2:74362484-74362503 | None:intergenic | 15.0% |
| !!! | TCTATTGTTCTTTTTTATTA+TGG | + | chr7_2:74364224-74364243 | Msa1075960:intron | 15.0% |
| !!! | CTATTGTTCTTTTTTATTAT+GGG | + | chr7_2:74364225-74364244 | Msa1075960:intron | 15.0% |
| !!! | TCTATTGTTCTTTTTTATTA+TGG | + | chr7_2:74364224-74364243 | Msa1075960:intron | 15.0% |
| !!! | CTATTGTTCTTTTTTATTAT+GGG | + | chr7_2:74364225-74364244 | Msa1075960:intron | 15.0% |
| !! | TTAAGTGTATGAAATTACAT+TGG | - | chr7_2:74362678-74362697 | None:intergenic | 20.0% |
| !! | AACAAAATTAATGACTGTTA+CGG | - | chr7_2:74362720-74362739 | None:intergenic | 20.0% |
| !!! | ACTTTGATTTTGTAAAAAGA+TGG | - | chr7_2:74362853-74362872 | None:intergenic | 20.0% |
| !!! | TTATTTTACAAGTTAAACCA+GGG | - | chr7_2:74363402-74363421 | None:intergenic | 20.0% |
| !!! | ATTATTTTACAAGTTAAACC+AGG | - | chr7_2:74363403-74363422 | None:intergenic | 20.0% |
| !! | TAATTCCAAACAAATAAGTA+GGG | - | chr7_2:74363559-74363578 | None:intergenic | 20.0% |
| !! | ATAATTCCAAACAAATAAGT+AGG | - | chr7_2:74363560-74363579 | None:intergenic | 20.0% |
| !! | TAAATATATTGAAACTGTGA+AGG | - | chr7_2:74363840-74363859 | None:intergenic | 20.0% |
| !! | AGAATAAGAACAAACAAATT+AGG | - | chr7_2:74363943-74363962 | None:intergenic | 20.0% |
| !!! | TATTATATCAGCATTTTTCT+TGG | - | chr7_2:74364416-74364435 | None:intergenic | 20.0% |
| !! | AATAAGAATGTCTGTAATAA+AGG | + | chr7_2:74364515-74364534 | Msa1075960:intron | 20.0% |
| !!! | TTAGAGTAAGCAAATAATTT+TGG | + | chr7_2:74364575-74364594 | Msa1075960:intron | 20.0% |
| !! | TATTACATATTGTTTGATCA+AGG | + | chr7_2:74364919-74364938 | Msa1075960:intron | 20.0% |
| !! | ATTACATATTGTTTGATCAA+GGG | + | chr7_2:74364920-74364939 | Msa1075960:intron | 20.0% |
| !!! | TTTTTTAATTTGGATTGTAG+TGG | + | chr7_2:74364977-74364996 | Msa1075960:intron | 20.0% |
| !! | CTAACATTGAACATTTATTT+CGG | - | chr7_2:74365307-74365326 | None:intergenic | 20.0% |
| !! | GTGGAAAGTTGATTTATAAT+TGG | - | chr7_2:74362644-74362663 | None:intergenic | 25.0% |
| ! | TACATTGGAAAAGAAAAAAG+TGG | - | chr7_2:74362663-74362682 | None:intergenic | 25.0% |
| ! | ACAAAATTAATGACTGTTAC+GGG | - | chr7_2:74362719-74362738 | None:intergenic | 25.0% |
| ! | GAAAACTTCTCATTAATAGA+TGG | - | chr7_2:74362746-74362765 | None:intergenic | 25.0% |
| ! | CACAAAATCATTATTGTAGA+AGG | + | chr7_2:74362949-74362968 | Msa1075960:CDS | 25.0% |
| !! | CGTTTCTTATATTTTTCCAT+TGG | + | chr7_2:74363055-74363074 | Msa1075960:intron | 25.0% |
| ! | TGTGAACTCTATAGAAAATT+CGG | + | chr7_2:74363101-74363120 | Msa1075960:intron | 25.0% |
| ! | TGCCTTGAAAATTATACTTA+TGG | + | chr7_2:74363153-74363172 | Msa1075960:intron | 25.0% |
| !! | GTCCATAAGTATAATTTTCA+AGG | - | chr7_2:74363158-74363177 | None:intergenic | 25.0% |
| !!! | ATAAAGGCATTGATTTATAG+AGG | + | chr7_2:74363342-74363361 | Msa1075960:intron | 25.0% |
| ! | ATTTATCCATGAGTTTATTC+AGG | + | chr7_2:74363423-74363442 | Msa1075960:intron | 25.0% |
| ! | AATTCCAAACAAATAAGTAG+GGG | - | chr7_2:74363558-74363577 | None:intergenic | 25.0% |
| !! | AATGCTGAAAAAGCATATAT+TGG | - | chr7_2:74363896-74363915 | None:intergenic | 25.0% |
| !! | GTTTGTTCTTATTCTTTTCA+AGG | + | chr7_2:74363948-74363967 | Msa1075960:intron | 25.0% |
| !!! | TAATTTTGCAGAAAAGTGTA+CGG | - | chr7_2:74364042-74364061 | None:intergenic | 25.0% |
| ! | TGTAATGTTTAGTTGAATGT+TGG | + | chr7_2:74364277-74364296 | Msa1075960:intron | 25.0% |
| ! | TGCTGATATAATAATCAAGT+CGG | + | chr7_2:74364423-74364442 | Msa1075960:CDS | 25.0% |
| !! | TAAAGCTGCATAACAATTTT+AGG | - | chr7_2:74364558-74364577 | None:intergenic | 25.0% |
| !! | TGTTCATTTTCAATTGTGAT+AGG | + | chr7_2:74365269-74365288 | Msa1075960:three_prime_UTR | 25.0% |
| ! | ATATATCACATTTCTCTGAT+AGG | + | chr7_2:74365327-74365346 | Msa1075960:three_prime_UTR | 25.0% |
| GTTATCTTAAAACCTTTGCA+AGG | + | chr7_2:74362533-74362552 | Msa1075960:intron | 30.0% | |
| CATCTAATATTAGAGTAGGT+TGG | - | chr7_2:74362559-74362578 | None:intergenic | 30.0% | |
| CTCACATCTAATATTAGAGT+AGG | - | chr7_2:74362563-74362582 | None:intergenic | 30.0% | |
| ! | CATCTTTGTTTGATGAGAAA+TGG | + | chr7_2:74363013-74363032 | Msa1075960:CDS | 30.0% |
| TGTTTGATGAGAAATGGTAT+TGG | + | chr7_2:74363019-74363038 | Msa1075960:intron | 30.0% | |
| GACAACTTTCAAAACTTTCA+AGG | - | chr7_2:74363081-74363100 | None:intergenic | 30.0% | |
| ! | AGAATTTTCAAAAGAGCAGT+CGG | - | chr7_2:74363134-74363153 | None:intergenic | 30.0% |
| AGCTAATTATCATCTGAATG+CGG | - | chr7_2:74363195-74363214 | None:intergenic | 30.0% | |
| ! | TTTAGAGCCTAAGTAGATAA+AGG | + | chr7_2:74363306-74363325 | Msa1075960:intron | 30.0% |
| CTAATGTATGGACATCAATT+AGG | - | chr7_2:74363534-74363553 | None:intergenic | 30.0% | |
| CTAATTGATGTCCATACATT+AGG | + | chr7_2:74363532-74363551 | Msa1075960:intron | 30.0% | |
| CAACAAATAGTGAACTACAA+AGG | - | chr7_2:74363631-74363650 | None:intergenic | 30.0% | |
| ATTTCTATTCCTGGACAATA+TGG | + | chr7_2:74363677-74363696 | Msa1075960:intron | 30.0% | |
| CTGAATATGATAGGTTGTTT+GGG | - | chr7_2:74363786-74363805 | None:intergenic | 30.0% | |
| ACTGAATATGATAGGTTGTT+TGG | - | chr7_2:74363787-74363806 | None:intergenic | 30.0% | |
| AACAACCTATCATATTCAGT+TGG | + | chr7_2:74363787-74363806 | Msa1075960:intron | 30.0% | |
| !! | AAAAAGCATATATTGGCCTT+GGG | - | chr7_2:74363889-74363908 | None:intergenic | 30.0% |
| AACAAACAAATTAGGCAAAC+CGG | - | chr7_2:74363935-74363954 | None:intergenic | 30.0% | |
| ACTAAACATCACAAGTTGTA+AGG | - | chr7_2:74364182-74364201 | None:intergenic | 30.0% | |
| TGTGATGTTTAGTTGAATGT+TGG | + | chr7_2:74364189-74364208 | Msa1075960:intron | 30.0% | |
| AATCCAAAGTAGCATTCATA+TGG | - | chr7_2:74364616-74364635 | None:intergenic | 30.0% | |
| !! | ATGTTTGATTTTACGCTTAG+AGG | + | chr7_2:74364769-74364788 | Msa1075960:intron | 30.0% |
| ! | TGCACAATTTTCAGTTTAAG+TGG | + | chr7_2:74364806-74364825 | Msa1075960:intron | 30.0% |
| ! | ATTTTCTTCGTTTTCTCCTT+CGG | + | chr7_2:74364841-74364860 | Msa1075960:intron | 30.0% |
| ! | TTAATTTGGATTGTAGTGGA+AGG | + | chr7_2:74364981-74365000 | Msa1075960:intron | 30.0% |
| !!! | TTACTTCGCATTTTTTCCAA+CGG | - | chr7_2:74365135-74365154 | None:intergenic | 30.0% |
| CACTTGATTGAAATTATGTC+TGG | + | chr7_2:74365183-74365202 | Msa1075960:three_prime_UTR | 30.0% | |
| AACTATTTGCTCTTGGAAGA+TGG | + | chr7_2:74362973-74362992 | Msa1075960:CDS | 35.0% | |
| ACTATTTGCTCTTGGAAGAT+GGG | + | chr7_2:74362974-74362993 | Msa1075960:CDS | 35.0% | |
| TTCAAAACTTTCAAGGCCAA+TGG | - | chr7_2:74363074-74363093 | None:intergenic | 35.0% | |
| ATATATTCCCAGCATGAAAC+AGG | - | chr7_2:74363222-74363241 | None:intergenic | 35.0% | |
| CATGGTACCTTTATCTACTT+AGG | - | chr7_2:74363316-74363335 | None:intergenic | 35.0% | |
| !! | CTAAGTAGATAAAGGTACCA+TGG | + | chr7_2:74363314-74363333 | Msa1075960:intron | 35.0% |
| AGGTACCATGGATGAAATAA+AGG | + | chr7_2:74363326-74363345 | Msa1075960:intron | 35.0% | |
| ! | CAATGCCTTTATTTCATCCA+TGG | - | chr7_2:74363334-74363353 | None:intergenic | 35.0% |
| ! | TTTTTCCTATAAATCCTCCC+TGG | + | chr7_2:74363382-74363401 | Msa1075960:intron | 35.0% |
| TTAAACCAGGGAGGATTTAT+AGG | - | chr7_2:74363390-74363409 | None:intergenic | 35.0% | |
| ! | TTTTACAAGTTAAACCAGGG+AGG | - | chr7_2:74363399-74363418 | None:intergenic | 35.0% |
| CTGAATCCTGAATAAACTCA+TGG | - | chr7_2:74363432-74363451 | None:intergenic | 35.0% | |
| TCAGAGTACATTTCTATTCC+TGG | + | chr7_2:74363668-74363687 | Msa1075960:intron | 35.0% | |
| AGCAAGAGACACTTTAAACA+GGG | + | chr7_2:74363724-74363743 | Msa1075960:intron | 35.0% | |
| ACAGACCAACTGAATATGAT+AGG | - | chr7_2:74363795-74363814 | None:intergenic | 35.0% | |
| !! | TGGTCTGTTGATTTCTGTTA+AGG | + | chr7_2:74363807-74363826 | Msa1075960:intron | 35.0% |
| !! | GGTCTGTTGATTTCTGTTAA+GGG | + | chr7_2:74363808-74363827 | Msa1075960:intron | 35.0% |
| ! | GAAAAAGCATATATTGGCCT+TGG | - | chr7_2:74363890-74363909 | None:intergenic | 35.0% |
| TTTCAGCATTAGAGTTATCC+AGG | + | chr7_2:74363906-74363925 | Msa1075960:intron | 35.0% | |
| ATTAGAGTTATCCAGGATAC+CGG | + | chr7_2:74363913-74363932 | Msa1075960:intron | 35.0% | |
| TATATCAGCTTTCTCTGCAT+AGG | + | chr7_2:74364065-74364084 | Msa1075960:intron | 35.0% | |
| ATATCAGCTTTCTCTGCATA+GGG | + | chr7_2:74364066-74364085 | Msa1075960:intron | 35.0% | |
| ! | TCTTTTCCCTTTCCATCTAT+AGG | + | chr7_2:74364116-74364135 | Msa1075960:intron | 35.0% |
| ! | GTTTCTTTTGTGTCTTGTAG+TGG | + | chr7_2:74364731-74364750 | Msa1075960:intron | 35.0% |
| ! | TTTTCTTCGTTTTCTCCTTC+GGG | + | chr7_2:74364842-74364861 | Msa1075960:intron | 35.0% |
| GATTAATGAAAAACACCCGA+AGG | - | chr7_2:74364860-74364879 | None:intergenic | 35.0% | |
| ATCAAGGGAAAATTGAGAAG+AGG | + | chr7_2:74364935-74364954 | Msa1075960:intron | 35.0% | |
| ! | GATTGTAGTGGAAGGTTATT+TGG | + | chr7_2:74364989-74365008 | Msa1075960:intron | 35.0% |
| ! | TGGAAGGTTATTTGGAATCT+GGG | + | chr7_2:74364997-74365016 | Msa1075960:three_prime_UTR | 35.0% |
| !! | TCAATCAAGTGCTGATCTTA+AGG | - | chr7_2:74365174-74365193 | None:intergenic | 35.0% |
| TAATGAAGACAACAACCACT+AGG | - | chr7_2:74365222-74365241 | None:intergenic | 35.0% | |
| GGTTGTTGTCTTCATTAGTA+AGG | + | chr7_2:74365225-74365244 | Msa1075960:three_prime_UTR | 35.0% | |
| TAGATGTGAGCAGAAAGTTC+AGG | + | chr7_2:74362573-74362592 | Msa1075960:intron | 40.0% | |
| TTTGTAAAAAGATGGCTCGC+TGG | - | chr7_2:74362845-74362864 | None:intergenic | 40.0% | |
| AGAAGGCAACTATTTGCTCT+TGG | + | chr7_2:74362966-74362985 | Msa1075960:CDS | 40.0% | |
| CTATTTGCTCTTGGAAGATG+GGG | + | chr7_2:74362975-74362994 | Msa1075960:CDS | 40.0% | |
| ATAAGTAGGGGCCTAATGTA+TGG | - | chr7_2:74363546-74363565 | None:intergenic | 40.0% | |
| TAGGCCCCTACTTATTTGTT+TGG | + | chr7_2:74363551-74363570 | Msa1075960:intron | 40.0% | |
| CAACATAAGCCATATTGTCC+AGG | - | chr7_2:74363689-74363708 | None:intergenic | 40.0% | |
| CAGCAAGAGACACTTTAAAC+AGG | + | chr7_2:74363723-74363742 | Msa1075960:intron | 40.0% | |
| ! | TTGAAGAGGCATATCTCTAC+TGG | + | chr7_2:74364010-74364029 | Msa1075960:CDS | 40.0% |
| ! | ATCAAGTCGGTTGATTTCTG+AGG | + | chr7_2:74364436-74364455 | Msa1075960:CDS | 40.0% |
| AAGTCAAGCCTAAATGTGCA+AGG | + | chr7_2:74364473-74364492 | Msa1075960:three_prime_UTR | 40.0% | |
| AGTCAAGCCTAAATGTGCAA+GGG | + | chr7_2:74364474-74364493 | Msa1075960:three_prime_UTR | 40.0% | |
| CTTACTTCCCTTGCACATTT+AGG | - | chr7_2:74364484-74364503 | None:intergenic | 40.0% | |
| AGTAGCATTCATATGGTGCT+TGG | - | chr7_2:74364609-74364628 | None:intergenic | 40.0% | |
| ! | GCACCATATGAATGCTACTT+TGG | + | chr7_2:74364610-74364629 | Msa1075960:intron | 40.0% |
| ! | GTGGAAGGTTATTTGGAATC+TGG | + | chr7_2:74364996-74365015 | Msa1075960:intron | 40.0% |
| ! | GGGTCTTTGAAAAACTATCC+TGG | + | chr7_2:74365017-74365036 | Msa1075960:three_prime_UTR | 40.0% |
| AAACACCATCTTGTCTCCTT+TGG | + | chr7_2:74365043-74365062 | Msa1075960:three_prime_UTR | 40.0% | |
| AGATACCAAAGGAGACAAGA+TGG | - | chr7_2:74365051-74365070 | None:intergenic | 40.0% | |
| GATAGCCTCTTATGATCCAA+GGG | - | chr7_2:74365103-74365122 | None:intergenic | 40.0% | |
| TGATAGCCTCTTATGATCCA+AGG | - | chr7_2:74365104-74365123 | None:intergenic | 40.0% | |
| GGCTATCACATTTATTCCGT+TGG | + | chr7_2:74365116-74365135 | Msa1075960:three_prime_UTR | 40.0% | |
| ! | GGAAAAGCACAAAATCCTAG+TGG | + | chr7_2:74365204-74365223 | Msa1075960:three_prime_UTR | 40.0% |
| CTCTGATAGGTTGTGATAAC+TGG | + | chr7_2:74365340-74365359 | Msa1075960:three_prime_UTR | 40.0% | |
| TGCTGCAAGTAGCAACTACT+TGG | - | chr7_2:74362886-74362905 | None:intergenic | 45.0% | |
| ! | AGCTTTTGCCTGTTTCATGC+TGG | + | chr7_2:74363211-74363230 | Msa1075960:intron | 45.0% |
| ! | GCTTTTGCCTGTTTCATGCT+GGG | + | chr7_2:74363212-74363231 | Msa1075960:intron | 45.0% |
| AAGTGTCTCTTGCTGACAAG+AGG | - | chr7_2:74363718-74363737 | None:intergenic | 45.0% | |
| GAAATATGCAACCTAGCCCA+AGG | + | chr7_2:74363870-74363889 | Msa1075960:intron | 45.0% | |
| AATTAGGCAAACCGGTATCC+TGG | - | chr7_2:74363927-74363946 | None:intergenic | 45.0% | |
| !!! | CAATGCAGCGAGTTTTGAAG+AGG | + | chr7_2:74363996-74364015 | Msa1075960:CDS | 45.0% |
| GGCTTGCCTATAGATGGAAA+GGG | - | chr7_2:74364125-74364144 | None:intergenic | 45.0% | |
| AGGCTTGCCTATAGATGGAA+AGG | - | chr7_2:74364126-74364145 | None:intergenic | 45.0% | |
| GACAAGATGGTGTTTATGCC+AGG | - | chr7_2:74365038-74365057 | None:intergenic | 45.0% | |
| CAGAGCAAGACAGATACCAA+AGG | - | chr7_2:74365062-74365081 | None:intergenic | 45.0% | |
| GGGAAGAAAATTGCATCCCT+TGG | + | chr7_2:74365084-74365103 | Msa1075960:three_prime_UTR | 45.0% | |
| TGCATCCCTTGGATCATAAG+AGG | + | chr7_2:74365095-74365114 | Msa1075960:three_prime_UTR | 45.0% | |
| !! | CAAGTGCTGATCTTAAGGAG+CGG | - | chr7_2:74365169-74365188 | None:intergenic | 45.0% |
| !!! | TCAAATAATTTTTTTTAATT+TGG | + | chr7_2:74364967-74364986 | Msa1075960:intron | 5.0% |
| !! | AGAGTAGGTTGGCCTTGCAA+AGG | - | chr7_2:74362548-74362567 | None:intergenic | 50.0% |
| TGCTCTTGGAAGATGGGGTA+TGG | + | chr7_2:74362980-74362999 | Msa1075960:CDS | 50.0% | |
| CTTGGAAGATGGGGTATGGA+AGG | + | chr7_2:74362984-74363003 | Msa1075960:CDS | 50.0% | |
| !! | GCATATATTGGCCTTGGGCT+AGG | - | chr7_2:74363884-74363903 | None:intergenic | 50.0% |
| TCTGGAGGCTTGCCTATAGA+TGG | - | chr7_2:74364131-74364150 | None:intergenic | 50.0% | |
| ACTCGCTGCTTAGCAATGTC+TGG | - | chr7_2:74364149-74364168 | None:intergenic | 50.0% | |
| TGGTATCTGTCTTGCTCTGC+TGG | + | chr7_2:74365063-74365082 | Msa1075960:three_prime_UTR | 50.0% | |
| GGTATCTGTCTTGCTCTGCT+GGG | + | chr7_2:74365064-74365083 | Msa1075960:three_prime_UTR | 50.0% | |
| CGCTGCTTAGCAATGTCTGG+AGG | - | chr7_2:74364146-74364165 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 74362459 | 74365363 | 74362459 | ID=Msa1075960;Name=Msa1075960 |
| chr7_2 | mRNA | 74362459 | 74365363 | 74362459 | ID=Msa1075960-mRNA-1;Parent=Msa1075960;Name=Msa1075960-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.6|0.5|0.83|0.4|0.33|6|409|90 |
| chr7_2 | exon | 74362459 | 74362466 | 74362459 | ID=Msa1075960-mRNA-1:exon:17466;Parent=Msa1075960-mRNA-1 |
| chr7_2 | exon | 74362948 | 74363034 | 74362948 | ID=Msa1075960-mRNA-1:exon:17467;Parent=Msa1075960-mRNA-1 |
| chr7_2 | exon | 74363970 | 74364031 | 74363970 | ID=Msa1075960-mRNA-1:exon:17468;Parent=Msa1075960-mRNA-1 |
| chr7_2 | exon | 74364138 | 74364166 | 74364138 | ID=Msa1075960-mRNA-1:exon:17469;Parent=Msa1075960-mRNA-1 |
| chr7_2 | exon | 74364370 | 74364498 | 74364370 | ID=Msa1075960-mRNA-1:exon:17470;Parent=Msa1075960-mRNA-1 |
| chr7_2 | exon | 74364997 | 74365363 | 74364997 | ID=Msa1075960-mRNA-1:exon:17471;Parent=Msa1075960-mRNA-1 |
| chr7_2 | CDS | 74362459 | 74362466 | 74362459 | ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1 |
| chr7_2 | CDS | 74362948 | 74363034 | 74362948 | ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1 |
| chr7_2 | CDS | 74363970 | 74364031 | 74363970 | ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1 |
| chr7_2 | CDS | 74364138 | 74364166 | 74364138 | ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1 |
| chr7_2 | CDS | 74364370 | 74364456 | 74364370 | ID=Msa1075960-mRNA-1:cds;Parent=Msa1075960-mRNA-1 |
| chr7_2 | three_prime_UTR | 74364457 | 74364498 | 74364457 | ID=Msa1075960-mRNA-1:three_prime_utr;Parent=Msa1075960-mRNA-1 |
| chr7_2 | three_prime_UTR | 74364997 | 74365363 | 74364997 | ID=Msa1075960-mRNA-1:three_prime_utr;Parent=Msa1075960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
