AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1320620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320620 MtrunA17_Chr8g0352241 94.048 252 10 2 1 251 1 248 4.38e-166 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320620 AT4G15030.1 61.268 284 68 4 1 251 1 275 1.56e-115 332
Msa1320620 AT4G15030.2 60.069 288 69 5 1 251 1 279 2.79e-112 324
Msa1320620 AT4G15030.3 60.069 288 69 5 1 251 1 279 2.79e-112 324

Find 69 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTCTCTTCACTTTCT+TGG 0.103766 8_4:-25291113 None:intergenic
AAGGAGCTACGATCAGATTT+TGG 0.151297 8_4:-25285456 None:intergenic
TTATCATATGTTTGTAATTT+AGG 0.183093 8_4:-25291976 None:intergenic
GTGCCTACAGTTAGTTTCTA+TGG 0.197234 8_4:+25286966 Msa1320620:intron
AACAAAGGTTTGAGATTTAT+TGG 0.205401 8_4:-25285432 None:intergenic
GCTAGTTGAAAATTTGTAAA+AGG 0.233730 8_4:+25285286 Msa1320620:five_prime_UTR
CGAAGAGAGGATTGCGAAAC+TGG 0.237898 8_4:+25285379 Msa1320620:five_prime_UTR
TATCAGGCTTTAATAAAATA+TGG 0.246167 8_4:+25292231 Msa1320620:three_prime_UTR
AGTAAATTTATCCATTTATC+AGG 0.248320 8_4:+25292215 Msa1320620:three_prime_UTR
CAAACAAGCTCTAGTTAAAT+TGG 0.261931 8_4:+25289847 Msa1320620:CDS
AATTTCATAACTGCATTAAT+AGG 0.277094 8_4:-25292140 None:intergenic
GAAGAATCTGCTACATGTTC+TGG 0.308849 8_4:+25292172 Msa1320620:three_prime_UTR
TGAAAATTTGTAAAAGGATA+AGG 0.316540 8_4:+25285292 Msa1320620:five_prime_UTR
TTGTAATTGCAGACAGTATC+AGG 0.337345 8_4:+25285616 Msa1320620:intron
GAGCTGGTAAACATGGAAAA+AGG 0.365567 8_4:+25291913 Msa1320620:three_prime_UTR
GAAAATTTGTAAAAGGATAA+GGG 0.391098 8_4:+25285293 Msa1320620:five_prime_UTR
ACAAAGGTTTGAGATTTATT+GGG 0.407887 8_4:-25285431 None:intergenic
ACACGCTAAGAGAGGGATAT+AGG 0.410948 8_4:+25287039 Msa1320620:CDS
CTAAAATTGCTTAATATACT+AGG 0.424715 8_4:+25292060 Msa1320620:three_prime_UTR
ATAGGCAACTTTAAGGTTGA+AGG 0.433714 8_4:-25287002 None:intergenic
AGTGAAGAGAGAAGGAGAAA+AGG 0.434606 8_4:+25291120 Msa1320620:CDS
ACCAGCCTTTGCTCCCATGA+TGG 0.442891 8_4:-25287722 None:intergenic
TCATTCACCATGACATCGTT+GGG 0.455151 8_4:+25285481 Msa1320620:exon
TTCGAAGAGTGATGATGATC+TGG 0.455182 8_4:+25291083 Msa1320620:CDS
ACGGTCAGAGGAAGATGATA+TGG 0.473518 8_4:+25287697 Msa1320620:CDS
TGCCTACAGTTAGTTTCTAT+GGG 0.476952 8_4:+25286967 Msa1320620:intron
TTCATTCACCATGACATCGT+TGG 0.490206 8_4:+25285480 Msa1320620:exon
AAGCATTGCAATGAGAAAGA+TGG 0.492067 8_4:+25289238 Msa1320620:CDS
AACATAGACGAGTTTCTTGA+GGG 0.498571 8_4:+25291829 Msa1320620:CDS
AATGTGTTGCAAGATTTATA+CGG 0.500196 8_4:+25287678 Msa1320620:intron
TCCATCATGGGAGCAAAGGC+TGG 0.509246 8_4:+25287721 Msa1320620:CDS
AAGATGATATGGATCCATCA+TGG 0.516160 8_4:+25287708 Msa1320620:CDS
ACAGAGAAGGAAGTCATGTC+TGG 0.518399 8_4:+25288612 Msa1320620:CDS
CAAAGGTTTGAGATTTATTG+GGG 0.529267 8_4:-25285430 None:intergenic
CAGTATCAGGCTCATATTCG+AGG 0.531781 8_4:+25285629 Msa1320620:CDS
ATGTAGCAGATTCTTCTACT+TGG 0.539283 8_4:-25292165 None:intergenic
GATGTCATGGTGAATGAAGA+AGG 0.541902 8_4:-25285475 None:intergenic
AGAAAGAAGACAACAAAAGC+TGG 0.545344 8_4:+25290951 Msa1320620:CDS
TGGATCCATCATGGGAGCAA+AGG 0.551016 8_4:+25287717 Msa1320620:CDS
GCATTTCTTGAGACAAGAGC+TGG 0.553229 8_4:+25291897 Msa1320620:three_prime_UTR
GAGACAAGAGCTGGTAAACA+TGG 0.557097 8_4:+25291906 Msa1320620:three_prime_UTR
TAGGCAGTGCTGGGAGCAAG+TGG 0.564184 8_4:+25291937 Msa1320620:three_prime_UTR
TTTAGTGTCAACAAGTTCGA+AGG 0.565832 8_4:-25292042 None:intergenic
GCCAAGAAAGTGAAGAGAGA+AGG 0.566074 8_4:+25291112 Msa1320620:CDS
TAACATAGACGAGTTTCTTG+AGG 0.575423 8_4:+25291828 Msa1320620:CDS
CAGAGATCCCAACGATGTCA+TGG 0.577645 8_4:-25285488 None:intergenic
TGCAAGATTTATACGGTCAG+AGG 0.578191 8_4:+25287685 Msa1320620:intron
CTACAAGAGGCAGAAAGAGA+AGG 0.586951 8_4:+25290921 Msa1320620:CDS
CAGGGAAACTTAACTACAAG+AGG 0.589540 8_4:+25290908 Msa1320620:CDS
GAGTGATGATGATCTGGACG+AGG 0.591426 8_4:+25291089 Msa1320620:CDS
AGATGATATGGATCCATCAT+GGG 0.599854 8_4:+25287709 Msa1320620:CDS
AAGGTTTGAGATTTATTGGG+GGG 0.601439 8_4:-25285428 None:intergenic
CTCTTCTCTGTCGAATATCG+CGG 0.603692 8_4:-25285515 None:intergenic
TGCTTAATATACTAGGCAGA+AGG 0.608974 8_4:+25292067 Msa1320620:three_prime_UTR
TGGGAGCAAGTGGATAATGC+AGG 0.609766 8_4:+25291947 Msa1320620:three_prime_UTR
TCTCAGATGGAGAACAGAGA+AGG 0.612843 8_4:+25288599 Msa1320620:CDS
AAGGAAGTCATGTCTGGCAA+AGG 0.614471 8_4:+25288618 Msa1320620:CDS
AGATAAAGACACGCTAAGAG+AGG 0.617719 8_4:+25287031 Msa1320620:CDS
AAAAGCTGGACAGAAGAAAG+AGG 0.623216 8_4:+25290965 Msa1320620:CDS
GATAAAGACACGCTAAGAGA+GGG 0.626505 8_4:+25287032 Msa1320620:CDS
GTCACAGTACAAGAGTGGTA+AGG 0.635278 8_4:+25288391 Msa1320620:CDS
ATTACAGGTCAGTTTATATG+CGG 0.641502 8_4:+25289211 Msa1320620:intron
TTAAATTGGTAGCATGTGAG+AGG 0.651772 8_4:+25289861 Msa1320620:CDS
GACATGTCACAGTACAAGAG+TGG 0.670486 8_4:+25288386 Msa1320620:CDS
AGCACTAGCACTTAAACGAG+TGG 0.674860 8_4:-25285266 None:intergenic
AGTGATGATGATCTGGACGA+GGG 0.693469 8_4:+25291090 Msa1320620:CDS
AAAGGTTTGAGATTTATTGG+GGG 0.697684 8_4:-25285429 None:intergenic
ACATAGACGAGTTTCTTGAG+GGG 0.714392 8_4:+25291830 Msa1320620:CDS
AGATGGATTAGCAAGCTACG+AGG 0.761444 8_4:+25289255 Msa1320620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAAGATATTCATA+TGG - chr8_4:25287574-25287593 None:intergenic 10.0%
!!! TATGAATATCTTTTATTATT+TGG + chr8_4:25287574-25287593 Msa1320620:intron 10.0%
!! TTTACTAAATATTTATATTG+AGG + chr8_4:25287797-25287816 Msa1320620:intron 10.0%
!! ACTAAAAAAAATATATTATG+GGG - chr8_4:25288506-25288525 None:intergenic 10.0%
!! GACTAAAAAAAATATATTAT+GGG - chr8_4:25288507-25288526 None:intergenic 10.0%
!! AGACTAAAAAAAATATATTA+TGG - chr8_4:25288508-25288527 None:intergenic 10.0%
!!! AAAACAAAACCTAATTTTTT+TGG + chr8_4:25285350-25285369 Msa1320620:five_prime_UTR 15.0%
!! AAACAGGAAAAAATAAAAAA+TGG - chr8_4:25286317-25286336 None:intergenic 15.0%
!!! ATTTTTTATTTTTTCCTGTT+TGG + chr8_4:25286316-25286335 Msa1320620:intron 15.0%
!!! TTTTTTATTTTTTCCTGTTT+GGG + chr8_4:25286317-25286336 Msa1320620:intron 15.0%
!!! TAATAGATACAATTTGTTAA+TGG + chr8_4:25286551-25286570 Msa1320620:intron 15.0%
!!! AATAGATACAATTTGTTAAT+GGG + chr8_4:25286552-25286571 Msa1320620:intron 15.0%
!!! ACAACTTTTATATATTTTTC+AGG + chr8_4:25287981-25288000 Msa1320620:intron 15.0%
!!! TTTTATATATTTTTCAGGAT+TGG + chr8_4:25287986-25288005 Msa1320620:intron 15.0%
!!! TTTATATATTTTTCAGGATT+GGG + chr8_4:25287987-25288006 Msa1320620:intron 15.0%
!! CAAAATTTATACATTGTTTA+TGG + chr8_4:25288038-25288057 Msa1320620:intron 15.0%
!! TATCACATAAGTATAAAATA+GGG - chr8_4:25288115-25288134 None:intergenic 15.0%
!! ATATCACATAAGTATAAAAT+AGG - chr8_4:25288116-25288135 None:intergenic 15.0%
!!! ATTTTATACTTATGTGATAT+TGG + chr8_4:25288116-25288135 Msa1320620:intron 15.0%
!! TTATGAAGATGATTAAAAAT+TGG - chr8_4:25288989-25289008 None:intergenic 15.0%
!! ATTAAAAGTTAAAACATTTC+TGG + chr8_4:25290308-25290327 Msa1320620:intron 15.0%
!!! TATTTTCTATTTTTGAATGA+AGG - chr8_4:25290382-25290401 None:intergenic 15.0%
!! AGATTTAATTAAACTAATAC+AGG - chr8_4:25290452-25290471 None:intergenic 15.0%
!! AAATTACAAAAACAGATTTA+TGG - chr8_4:25290588-25290607 None:intergenic 15.0%
!! TAATAGTTAACTTAAATGTT+TGG + chr8_4:25291662-25291681 Msa1320620:intron 15.0%
!! TGAAAATACATGTTAATTAA+AGG - chr8_4:25291743-25291762 None:intergenic 15.0%
!!! TTTAATTAACATGTATTTTC+AGG + chr8_4:25291742-25291761 Msa1320620:intron 15.0%
!! TTATCATATGTTTGTAATTT+AGG - chr8_4:25291979-25291998 None:intergenic 15.0%
!! TGAAAATTTGTAAAAGGATA+AGG + chr8_4:25285292-25285311 Msa1320620:five_prime_UTR 20.0%
!! GAAAATTTGTAAAAGGATAA+GGG + chr8_4:25285293-25285312 Msa1320620:five_prime_UTR 20.0%
!! AAAAAGTTTATCAACGATTA+CGG + chr8_4:25285674-25285693 Msa1320620:CDS 20.0%
!!! CAATTTTCTTCTAAATAAGT+TGG + chr8_4:25286027-25286046 Msa1320620:intron 20.0%
!! ACAATAGGATTAATCAAATT+TGG + chr8_4:25286345-25286364 Msa1320620:intron 20.0%
!!! ATTTTTCTATTTCTAAGCAA+AGG - chr8_4:25287397-25287416 None:intergenic 20.0%
!! TTTGCTTAGAAATAGAAAAA+TGG + chr8_4:25287396-25287415 Msa1320620:intron 20.0%
!! TTGCTTAGAAATAGAAAAAT+GGG + chr8_4:25287397-25287416 Msa1320620:intron 20.0%
!!! TTATTATGCTAAGCTTTTTA+AGG + chr8_4:25287751-25287770 Msa1320620:CDS 20.0%
!! GTAAAAAAATAATTGTGCAA+AGG - chr8_4:25287782-25287801 None:intergenic 20.0%
!!! CACTATTTTTGTTAAAAACA+TGG - chr8_4:25287929-25287948 None:intergenic 20.0%
!!! TGTTTTTATAGTCTATTACT+AGG + chr8_4:25287947-25287966 Msa1320620:intron 20.0%
!!! ATAAAATAGGGTGATATTTT+TGG - chr8_4:25288103-25288122 None:intergenic 20.0%
!! TATGCAGATTATATCTTTAA+AGG + chr8_4:25288540-25288559 Msa1320620:intron 20.0%
!!! AATTGCATATTTTTGTAGAT+TGG + chr8_4:25288576-25288595 Msa1320620:intron 20.0%
!!! AAATAGTTCTAGTTAAACAT+GGG - chr8_4:25288700-25288719 None:intergenic 20.0%
!!! TTCAAAAAACAAATGCTTTT+TGG + chr8_4:25288718-25288737 Msa1320620:intron 20.0%
!! AAATAGAAGATGTAAACTAT+GGG - chr8_4:25288897-25288916 None:intergenic 20.0%
!! ATAGATTGATTAATGGTAAT+GGG - chr8_4:25289293-25289312 None:intergenic 20.0%
!! AATAGATTGATTAATGGTAA+TGG - chr8_4:25289294-25289313 None:intergenic 20.0%
!! TAGTCAAATAGATTGATTAA+TGG - chr8_4:25289300-25289319 None:intergenic 20.0%
!! AGATATAGCGTAAATTATAT+TGG + chr8_4:25289441-25289460 Msa1320620:intron 20.0%
!!! AATGCATTATGCTATTTATT+AGG + chr8_4:25289522-25289541 Msa1320620:intron 20.0%
!! TATTAATTGAGTTTGTGATA+TGG + chr8_4:25289623-25289642 Msa1320620:intron 20.0%
!! ATTTGAACACATCTAATTTA+AGG + chr8_4:25290174-25290193 Msa1320620:intron 20.0%
!! TTTGAACACATCTAATTTAA+GGG + chr8_4:25290175-25290194 Msa1320620:intron 20.0%
!! TAATAATAAGACATTTCCAA+AGG - chr8_4:25290292-25290311 None:intergenic 20.0%
!! AACAACTAGTAATATTATTG+AGG - chr8_4:25290500-25290519 None:intergenic 20.0%
!! CAAATTACAAAAATAGTACA+TGG - chr8_4:25290562-25290581 None:intergenic 20.0%
!! AAAATCACAAAAATAGTATG+TGG - chr8_4:25290611-25290630 None:intergenic 20.0%
!!! TGTTCATTTGAAGATTATTT+TGG + chr8_4:25290724-25290743 Msa1320620:intron 20.0%
!!! GTAATCTCAATTTTGTAAAA+AGG - chr8_4:25290755-25290774 None:intergenic 20.0%
!! AACCAATAAATAAATGAAAC+CGG - chr8_4:25290872-25290891 None:intergenic 20.0%
!!! GATATGAAACTTTGTATTTT+CGG + chr8_4:25291176-25291195 Msa1320620:intron 20.0%
!! AATCAAAATGCTAAAATAAC+CGG - chr8_4:25291231-25291250 None:intergenic 20.0%
!!! AACAGATTAGTTAAAAATCA+GGG - chr8_4:25291862-25291881 None:intergenic 20.0%
!! CTAAAATTGCTTAATATACT+AGG + chr8_4:25292060-25292079 Msa1320620:three_prime_UTR 20.0%
!! AATTTCATAACTGCATTAAT+AGG - chr8_4:25292143-25292162 None:intergenic 20.0%
!! AGTAAATTTATCCATTTATC+AGG + chr8_4:25292215-25292234 Msa1320620:three_prime_UTR 20.0%
!!! TTTTATTAAAGCCTGATAAA+TGG - chr8_4:25292229-25292248 None:intergenic 20.0%
!!! TATCAGGCTTTAATAAAATA+TGG + chr8_4:25292231-25292250 Msa1320620:three_prime_UTR 20.0%
!! ACAAAAAATGTCTGATTATT+TGG + chr8_4:25292264-25292283 Msa1320620:three_prime_UTR 20.0%
! GCTAGTTGAAAATTTGTAAA+AGG + chr8_4:25285286-25285305 Msa1320620:five_prime_UTR 25.0%
!!! AAATTAGGTTTTGTTTTTGC+TGG - chr8_4:25285347-25285366 None:intergenic 25.0%
! TCGATTCTACCAAAAAAATT+AGG - chr8_4:25285362-25285381 None:intergenic 25.0%
!! ACAAAGGTTTGAGATTTATT+GGG - chr8_4:25285434-25285453 None:intergenic 25.0%
!! AACAAAGGTTTGAGATTTAT+TGG - chr8_4:25285435-25285454 None:intergenic 25.0%
!!! AATCGTTGATAAACTTTTTG+TGG - chr8_4:25285673-25285692 None:intergenic 25.0%
! ATTACAGTAACCAATGAAAT+CGG - chr8_4:25285789-25285808 None:intergenic 25.0%
! GAAAACATCTTATAGCTTAT+AGG - chr8_4:25285876-25285895 None:intergenic 25.0%
!! GATGTTTTCATAAGCTATTT+TGG + chr8_4:25285887-25285906 Msa1320620:intron 25.0%
! TTCAAATAAGTCATTCCTAA+TGG + chr8_4:25285987-25286006 Msa1320620:intron 25.0%
! ATAAATGATAACTGTCCATT+AGG - chr8_4:25286005-25286024 None:intergenic 25.0%
!!! TTTCTTCTAAATAAGTTGGT+TGG + chr8_4:25286031-25286050 Msa1320620:intron 25.0%
!!! TGATATTCGAACTGTTTTTT+TGG + chr8_4:25286288-25286307 Msa1320620:intron 25.0%
!! CAAATTTGGAGATATTGATT+TGG + chr8_4:25286359-25286378 Msa1320620:intron 25.0%
! AAAAACAAAAATGACATGCA+CGG - chr8_4:25286491-25286510 None:intergenic 25.0%
! AAATCTTTCTGTTCTTGAAT+TGG - chr8_4:25286526-25286545 None:intergenic 25.0%
!!! ATAAAAGTCCTTTTTCAATG+TGG - chr8_4:25286722-25286741 None:intergenic 25.0%
! TTAATCTCAGAAGAATTCAT+CGG - chr8_4:25286940-25286959 None:intergenic 25.0%
!!! TGTTTTAATAGGCAACTTTA+AGG - chr8_4:25287012-25287031 None:intergenic 25.0%
!!! GTGTCTTTATCTGTTTTAAT+AGG - chr8_4:25287023-25287042 None:intergenic 25.0%
! GGAAAAATAAGACAATATTG+AGG - chr8_4:25287124-25287143 None:intergenic 25.0%
! CAAGTTTCTTGTAATAAAAG+AGG - chr8_4:25287145-25287164 None:intergenic 25.0%
! TACTGGTATTAAAAAGAAGA+TGG - chr8_4:25287228-25287247 None:intergenic 25.0%
!!! GATCTTTGGTGTATTTTATT+TGG + chr8_4:25287354-25287373 Msa1320620:intron 25.0%
! AAAAATAAAACAGAACCCTA+AGG + chr8_4:25287485-25287504 Msa1320620:intron 25.0%
! TATAAATCTTGCAACACATT+TGG - chr8_4:25287678-25287697 None:intergenic 25.0%
! AATGTGTTGCAAGATTTATA+CGG + chr8_4:25287678-25287697 Msa1320620:intron 25.0%
!!! ATTTGCCCAATTTTGTTTAT+TGG + chr8_4:25288075-25288094 Msa1320620:intron 25.0%
!!! TTTGCCCAATTTTGTTTATT+GGG + chr8_4:25288076-25288095 Msa1320620:intron 25.0%
!!! TTGGGTTTTGATTATAGATT+TGG + chr8_4:25288141-25288160 Msa1320620:intron 25.0%
!! ATAGATTTGGTTGAATTAGT+TGG + chr8_4:25288154-25288173 Msa1320620:intron 25.0%
!! TCTAAAATGGCTTATATGAA+AGG + chr8_4:25288264-25288283 Msa1320620:intron 25.0%
! CAGTATCTTAAAAGGATTTA+AGG - chr8_4:25288359-25288378 None:intergenic 25.0%
!!! GCATTTAGAATATTTTTTCG+TGG + chr8_4:25288427-25288446 Msa1320620:intron 25.0%
! CAAGGTTCAAAATTACTAAA+AGG - chr8_4:25288469-25288488 None:intergenic 25.0%
!!! GAAATAGTTCTAGTTAAACA+TGG - chr8_4:25288701-25288720 None:intergenic 25.0%
! TTCTCCCACAAAAAAAAAAA+AGG + chr8_4:25288819-25288838 Msa1320620:intron 25.0%
!!! CCATCCTTTTTTTTTTTTGT+GGG - chr8_4:25288826-25288845 None:intergenic 25.0%
!!! ACCATCCTTTTTTTTTTTTG+TGG - chr8_4:25288827-25288846 None:intergenic 25.0%
! GAAATAGAAGATGTAAACTA+TGG - chr8_4:25288898-25288917 None:intergenic 25.0%
! TATAACAAATTAAAGACAGC+TGG - chr8_4:25289146-25289165 None:intergenic 25.0%
! CGTTAACTTCAAAATTGAAT+AGG - chr8_4:25289180-25289199 None:intergenic 25.0%
! AACGTTTCACATAATATTAC+AGG + chr8_4:25289196-25289215 Msa1320620:intron 25.0%
!! GTTTTTCCTAATGTTTTCTA+CGG - chr8_4:25289379-25289398 None:intergenic 25.0%
! GATCATCAGAAATTATAGTA+AGG - chr8_4:25289414-25289433 None:intergenic 25.0%
! AAGCAAATAGAATAAAAGAG+TGG - chr8_4:25289785-25289804 None:intergenic 25.0%
!!! AACTTTTGTTATTTTGAAGC+AGG + chr8_4:25289818-25289837 Msa1320620:CDS 25.0%
!!! ATCAGTTGATGAAGAAATTA+AGG + chr8_4:25289972-25289991 Msa1320620:intron 25.0%
! AAACATTTAACAAATATGGC+AGG - chr8_4:25290112-25290131 None:intergenic 25.0%
! GAGCAAACATTTAACAAATA+TGG - chr8_4:25290116-25290135 None:intergenic 25.0%
! TTATATACAATAACCAGAAG+AGG - chr8_4:25290138-25290157 None:intergenic 25.0%
! TTGATTATATCATTATCACC+TGG + chr8_4:25290245-25290264 Msa1320620:intron 25.0%
!! AATATGATAATGTATGTTCG+TGG + chr8_4:25290398-25290417 Msa1320620:intron 25.0%
! ACAAAAATAGTACATGGAAA+TGG - chr8_4:25290556-25290575 None:intergenic 25.0%
! AAAAACCTTAATGACTTGAA+AGG - chr8_4:25290802-25290821 None:intergenic 25.0%
! TTAAATAATTGAAGGTTGTC+AGG + chr8_4:25290835-25290854 Msa1320620:intron 25.0%
! TTCCGGTTTCATTTATTTAT+TGG + chr8_4:25290867-25290886 Msa1320620:intron 25.0%
!! TTATTTTCAATAGATGTGCA+GGG + chr8_4:25290890-25290909 Msa1320620:intron 25.0%
! AATAAGAGGAAAATAAGAAG+GGG - chr8_4:25291020-25291039 None:intergenic 25.0%
! CAATAAGAGGAAAATAAGAA+GGG - chr8_4:25291021-25291040 None:intergenic 25.0%
! TCAATAAGAGGAAAATAAGA+AGG - chr8_4:25291022-25291041 None:intergenic 25.0%
!! ACGTATTTTCATTCAATAAG+AGG - chr8_4:25291034-25291053 None:intergenic 25.0%
! TGATGTAAAATAGCCATAAA+AGG - chr8_4:25291155-25291174 None:intergenic 25.0%
!!! TTTTATGGCTATTTTACATC+AGG + chr8_4:25291154-25291173 Msa1320620:intron 25.0%
!! CTAGTTCTTACTAAAAGAAA+CGG - chr8_4:25291345-25291364 None:intergenic 25.0%
!! TGTATTTGCATCTTTTGTAA+TGG + chr8_4:25291468-25291487 Msa1320620:intron 25.0%
! ACAATGTTTCACATCATAAT+AGG - chr8_4:25291530-25291549 None:intergenic 25.0%
! AAAACATTTCCTAGTAGTAT+TGG - chr8_4:25291556-25291575 None:intergenic 25.0%
!! AATGTTTTATATGCCAACAA+TGG + chr8_4:25291568-25291587 Msa1320620:intron 25.0%
!! ATGTTTTATATGCCAACAAT+GGG + chr8_4:25291569-25291588 Msa1320620:intron 25.0%
!! ATCATCAATTTTATGATCAC+TGG - chr8_4:25291788-25291807 None:intergenic 25.0%
!! CAACAGATTAGTTAAAAATC+AGG - chr8_4:25291863-25291882 None:intergenic 25.0%
!!! TTTGTTTTTGCTGGTTATAC+AGG - chr8_4:25285338-25285357 None:intergenic 30.0%
! AAAGGTTTGAGATTTATTGG+GGG - chr8_4:25285432-25285451 None:intergenic 30.0%
! CAAAGGTTTGAGATTTATTG+GGG - chr8_4:25285433-25285452 None:intergenic 30.0%
GATTTATCGAAGAATGAATG+AGG - chr8_4:25285575-25285594 None:intergenic 30.0%
ATGAGAAACAGAAACAAGTT+AGG - chr8_4:25285597-25285616 None:intergenic 30.0%
!! TGTTTTTGAACCGATTTCAT+TGG + chr8_4:25285776-25285795 Msa1320620:intron 30.0%
ACTTATTTGAACTTCTCAAC+TGG - chr8_4:25285978-25285997 None:intergenic 30.0%
!!! TATTTTTTCCTGTTTGGGAA+TGG + chr8_4:25286322-25286341 Msa1320620:intron 30.0%
!! TTTGGAGATATTGATTTGGT+TGG + chr8_4:25286363-25286382 Msa1320620:intron 30.0%
TCTTAATGTCCTACAGTAAA+TGG + chr8_4:25286386-25286405 Msa1320620:intron 30.0%
!! ATGCTTATATTGGTTTCCTA+CGG + chr8_4:25286587-25286606 Msa1320620:intron 30.0%
!! TTTTGATTCAAATGACCTTC+AGG + chr8_4:25286686-25286705 Msa1320620:intron 30.0%
ATCTTGCCATATGTATGATA+AGG + chr8_4:25287072-25287091 Msa1320620:intron 30.0%
AAATTGTACTATGACACCAA+AGG - chr8_4:25287278-25287297 None:intergenic 30.0%
! CTGATTTTTCTCTTATAGCA+AGG - chr8_4:25287334-25287353 None:intergenic 30.0%
! CTTGCTATAAGAGAAAAATC+AGG + chr8_4:25287332-25287351 Msa1320620:intron 30.0%
AAGAGAAAAATCAGGATCTT+TGG + chr8_4:25287340-25287359 Msa1320620:intron 30.0%
ATTTCAATAGTCATGCCTTA+GGG - chr8_4:25287503-25287522 None:intergenic 30.0%
TCAACATTTGCTCAATTTCT+AGG - chr8_4:25287872-25287891 None:intergenic 30.0%
TGGTCCCAATAAACAAAATT+GGG - chr8_4:25288083-25288102 None:intergenic 30.0%
TTGGTCCCAATAAACAAAAT+TGG - chr8_4:25288084-25288103 None:intergenic 30.0%
TACTTATGTGATATTGGCAT+TGG + chr8_4:25288122-25288141 Msa1320620:intron 30.0%
ACTTATGTGATATTGGCATT+GGG + chr8_4:25288123-25288142 Msa1320620:intron 30.0%
! AATCCATTAGCTCTTACATA+CGG - chr8_4:25288186-25288205 None:intergenic 30.0%
! AAGCTCTGTTTACTAGATTT+TGG + chr8_4:25288222-25288241 Msa1320620:intron 30.0%
GATGGTAATTGTGAGTTTAA+TGG - chr8_4:25288794-25288813 None:intergenic 30.0%
CCCACAAAAAAAAAAAAGGA+TGG + chr8_4:25288823-25288842 Msa1320620:intron 30.0%
TGTAAACTATGGGATTCATA+CGG - chr8_4:25288887-25288906 None:intergenic 30.0%
! ATTTAAAACTCAACTCTTGC+AGG + chr8_4:25289025-25289044 Msa1320620:intron 30.0%
GACAGGTAAGTGAAAAATAT+AGG - chr8_4:25289094-25289113 None:intergenic 30.0%
ATTACAGGTCAGTTTATATG+CGG + chr8_4:25289211-25289230 Msa1320620:intron 30.0%
TTGAAGTTAACCCAATCAAA+AGG + chr8_4:25289342-25289361 Msa1320620:intron 30.0%
TGAAGTTAACCCAATCAAAA+GGG + chr8_4:25289343-25289362 Msa1320620:intron 30.0%
AATTATAGTAAGGTTCTTCC+TGG - chr8_4:25289404-25289423 None:intergenic 30.0%
ATCACATTTACATGAAACAC+TGG - chr8_4:25289572-25289591 None:intergenic 30.0%
AGAATAAAAGAGTGGAAACA+TGG - chr8_4:25289777-25289796 None:intergenic 30.0%
TTCTATTTGCTTCATGTTAC+AGG + chr8_4:25289793-25289812 Msa1320620:intron 30.0%
! CAAACAAGCTCTAGTTAAAT+TGG + chr8_4:25289847-25289866 Msa1320620:CDS 30.0%
ATGGATTCAGAAGAAAACAA+TGG - chr8_4:25289926-25289945 None:intergenic 30.0%
GTGTACCAATAACAAATCAT+CGG + chr8_4:25290008-25290027 Msa1320620:intron 30.0%
!! ATACACCGATGATTTGTTAT+TGG - chr8_4:25290016-25290035 None:intergenic 30.0%
AAAGTTCTTGTTAGTTGCAT+GGG + chr8_4:25290219-25290238 Msa1320620:intron 30.0%
!!! GCATATACTGATTTTTTTCC+AGG - chr8_4:25290266-25290285 None:intergenic 30.0%
! GTGATTTTTAATGATTGCCT+TGG + chr8_4:25290623-25290642 Msa1320620:intron 30.0%
TGTAAATTCAAATTCGTCCA+AGG - chr8_4:25290643-25290662 None:intergenic 30.0%
CAAATGAACACATAAATAGC+AGG - chr8_4:25290714-25290733 None:intergenic 30.0%
ATTGAGATTACTCATCACTT+TGG + chr8_4:25290764-25290783 Msa1320620:intron 30.0%
TTGTCAGGTAAATCAAATTC+CGG + chr8_4:25290850-25290869 Msa1320620:intron 30.0%
!! GTTATTTTCAATAGATGTGC+AGG + chr8_4:25290889-25290908 Msa1320620:intron 30.0%
ATAAGAGGAAAATAAGAAGG+GGG - chr8_4:25291019-25291038 None:intergenic 30.0%
GATTGAATCCTTTCAATTGT+AGG + chr8_4:25291055-25291074 Msa1320620:intron 30.0%
!! AAGGTTTGAAGTTCCTTTTA+TGG + chr8_4:25291139-25291158 Msa1320620:intron 30.0%
!!! TCATCATTTGTTTTTGTTGC+AGG + chr8_4:25291200-25291219 Msa1320620:intron 30.0%
! CGTTTCTTTTAGTAAGAACT+AGG + chr8_4:25291343-25291362 Msa1320620:intron 30.0%
! TCTTTTAGTAAGAACTAGGA+AGG + chr8_4:25291347-25291366 Msa1320620:intron 30.0%
GCACTTATCATTGTAAATCT+AGG - chr8_4:25291373-25291392 None:intergenic 30.0%
! TAGTAGTCTTACAAGTATGT+TGG + chr8_4:25291430-25291449 Msa1320620:intron 30.0%
CATTGTTTACCAATACTACT+AGG + chr8_4:25291544-25291563 Msa1320620:intron 30.0%
AGTTCATAGCAGTAAATGTT+AGG - chr8_4:25291717-25291736 None:intergenic 30.0%
!! AACATGTATTTTCAGGAAAG+AGG + chr8_4:25291749-25291768 Msa1320620:intron 30.0%
!! ACATGTATTTTCAGGAAAGA+GGG + chr8_4:25291750-25291769 Msa1320620:intron 30.0%
!!! AAGAAATGCTTTTCAGGTAA+TGG - chr8_4:25291886-25291905 None:intergenic 30.0%
!! TTTTGCTGGTTATACAGGTA+AGG - chr8_4:25285333-25285352 None:intergenic 35.0%
!! TTTTTGGTAGAATCGAAGAG+AGG + chr8_4:25285366-25285385 Msa1320620:five_prime_UTR 35.0%
! AAGGTTTGAGATTTATTGGG+GGG - chr8_4:25285431-25285450 None:intergenic 35.0%
TATCGAAGAATGAATGAGGA+GGG - chr8_4:25285571-25285590 None:intergenic 35.0%
TTATCGAAGAATGAATGAGG+AGG - chr8_4:25285572-25285591 None:intergenic 35.0%
TTGTAATTGCAGACAGTATC+AGG + chr8_4:25285616-25285635 Msa1320620:intron 35.0%
!!! AAGCTATTTTGGTGAGCTTA+TGG + chr8_4:25285898-25285917 Msa1320620:intron 35.0%
! TTTTCATAAGCTCTCCCAAA+CGG + chr8_4:25286194-25286213 Msa1320620:intron 35.0%
GTTCATCATCCATTTACTGT+AGG - chr8_4:25286398-25286417 None:intergenic 35.0%
ATGAACAGTCTTCTCCATTA+AGG + chr8_4:25286412-25286431 Msa1320620:intron 35.0%
AGTCTTCTCCATTAAGGAAA+AGG + chr8_4:25286418-25286437 Msa1320620:intron 35.0%
TTCTCCATTAAGGAAAAGGA+AGG + chr8_4:25286422-25286441 Msa1320620:intron 35.0%
TCTTTCTGTTCTTGAATTGG+TGG - chr8_4:25286523-25286542 None:intergenic 35.0%
!! TTTGTTAATGGGTTTGTGAC+TGG + chr8_4:25286563-25286582 Msa1320620:intron 35.0%
!! TTGTTAATGGGTTTGTGACT+GGG + chr8_4:25286564-25286583 Msa1320620:intron 35.0%
TTCAAATGACCTTCAGGATT+TGG + chr8_4:25286692-25286711 Msa1320620:intron 35.0%
ATGTCAGAATCAGATTTCCA+TGG + chr8_4:25286867-25286886 Msa1320620:intron 35.0%
! TGCCTACAGTTAGTTTCTAT+GGG + chr8_4:25286967-25286986 Msa1320620:intron 35.0%
TTCCCATAGAAACTAACTGT+AGG - chr8_4:25286972-25286991 None:intergenic 35.0%
!! ATAGGCAACTTTAAGGTTGA+AGG - chr8_4:25287005-25287024 None:intergenic 35.0%
TGCCATATGTATGATAAGGA+TGG + chr8_4:25287076-25287095 Msa1320620:intron 35.0%
CACCATCCTTATCATACATA+TGG - chr8_4:25287081-25287100 None:intergenic 35.0%
GATTTCAATAGTCATGCCTT+AGG - chr8_4:25287504-25287523 None:intergenic 35.0%
TCCTAAAAGGATCTTCAGTA+GGG - chr8_4:25287547-25287566 None:intergenic 35.0%
TTCATATGGAAGCTCCTAAA+AGG - chr8_4:25287560-25287579 None:intergenic 35.0%
AGTTGAGAGAAAAGATGGTA+AGG - chr8_4:25287619-25287638 None:intergenic 35.0%
! AGACAAGTTGAGAGAAAAGA+TGG - chr8_4:25287624-25287643 None:intergenic 35.0%
AAGATGATATGGATCCATCA+TGG + chr8_4:25287708-25287727 Msa1320620:CDS 35.0%
AGATGATATGGATCCATCAT+GGG + chr8_4:25287709-25287728 Msa1320620:CDS 35.0%
GATACAAGTAACGCTAACAA+AGG - chr8_4:25287842-25287861 None:intergenic 35.0%
GTTAGCGTTACTTGTATCTT+TGG + chr8_4:25287844-25287863 Msa1320620:intron 35.0%
! GATTTGGTTGAATTAGTTGG+AGG + chr8_4:25288157-25288176 Msa1320620:intron 35.0%
AATCCGTATGTAAGAGCTAA+TGG + chr8_4:25288180-25288199 Msa1320620:intron 35.0%
CAGCAAGACAGTATCTTAAA+AGG - chr8_4:25288367-25288386 None:intergenic 35.0%
!!! TTTTGTAGATTGGTCTCAGA+TGG + chr8_4:25288586-25288605 Msa1320620:intron 35.0%
CATAACCAAGCAAAACTAGT+CGG - chr8_4:25288661-25288680 None:intergenic 35.0%
TCTAGTTAAACATGGGATGA+AGG - chr8_4:25288693-25288712 None:intergenic 35.0%
! TTTTGTGGGAGAAAAACAGA+TGG - chr8_4:25288812-25288831 None:intergenic 35.0%
! TTCCTTGTCATTTCCTATGA+TGG + chr8_4:25288915-25288934 Msa1320620:intron 35.0%
! AATATCTTGGTGACCATCAT+AGG - chr8_4:25288931-25288950 None:intergenic 35.0%
TCTGACAGTCTCAAATATCT+TGG - chr8_4:25288944-25288963 None:intergenic 35.0%
TGCAACAATGCAGTTAGAAT+AGG - chr8_4:25289116-25289135 None:intergenic 35.0%
! AAGCATTGCAATGAGAAAGA+TGG + chr8_4:25289238-25289257 Msa1320620:CDS 35.0%
!! ATTTGACTAGTCTGTTAGAG+AGG + chr8_4:25289311-25289330 Msa1320620:intron 35.0%
!! TTTGACTAGTCTGTTAGAGA+GGG + chr8_4:25289312-25289331 Msa1320620:intron 35.0%
AGAAGACCGTAGAAAACATT+AGG + chr8_4:25289370-25289389 Msa1320620:intron 35.0%
AAACATTAGGAAAAACCACC+AGG + chr8_4:25289383-25289402 Msa1320620:intron 35.0%
!!! GCTGTTGTTTGTCTTGTTTT+AGG + chr8_4:25289499-25289518 Msa1320620:intron 35.0%
ATTAACTTCAGCTCTTCTTG+AGG + chr8_4:25289719-25289738 Msa1320620:intron 35.0%
TTAACTTCAGCTCTTCTTGA+GGG + chr8_4:25289720-25289739 Msa1320620:intron 35.0%
! TTAAATTGGTAGCATGTGAG+AGG + chr8_4:25289861-25289880 Msa1320620:CDS 35.0%
TTCAGAAGAAAACAATGGCA+CGG - chr8_4:25289921-25289940 None:intergenic 35.0%
AATCCATATCCTCTAGTGAA+GGG + chr8_4:25289939-25289958 Msa1320620:intron 35.0%
ACATTCTACAATTCTCCTTC+TGG + chr8_4:25290077-25290096 Msa1320620:intron 35.0%
TTAAATGTTTGCTCCTCTTC+TGG + chr8_4:25290122-25290141 Msa1320620:intron 35.0%
AACTAACAAGAACTTTGCAC+GGG - chr8_4:25290215-25290234 None:intergenic 35.0%
CAACTAACAAGAACTTTGCA+CGG - chr8_4:25290216-25290235 None:intergenic 35.0%
CAAAGTTCTTGTTAGTTGCA+TGG + chr8_4:25290218-25290237 Msa1320620:intron 35.0%
AATCAGTATATGCTGACCTT+TGG + chr8_4:25290273-25290292 Msa1320620:intron 35.0%
TAATTTCTGTAGTCTGTCTC+TGG + chr8_4:25290344-25290363 Msa1320620:intron 35.0%
TCCTGAATGTCAAAGCATAT+TGG - chr8_4:25290674-25290693 None:intergenic 35.0%
! TGTCTCCTTTCAAGTCATTA+AGG + chr8_4:25290794-25290813 Msa1320620:intron 35.0%
AGAAAGAAGACAACAAAAGC+TGG + chr8_4:25290951-25290970 Msa1320620:CDS 35.0%
GTTTCACATCATAATAGGCA+AGG - chr8_4:25291525-25291544 None:intergenic 35.0%
! TCAGCTTTTAAGCATGATCA+TGG + chr8_4:25291609-25291628 Msa1320620:intron 35.0%
! GACAGAATTTTCAGAGTAGA+AGG - chr8_4:25291695-25291714 None:intergenic 35.0%
TAACATAGACGAGTTTCTTG+AGG + chr8_4:25291828-25291847 Msa1320620:CDS 35.0%
AACATAGACGAGTTTCTTGA+GGG + chr8_4:25291829-25291848 Msa1320620:CDS 35.0%
! TGTCTCAAGAAATGCTTTTC+AGG - chr8_4:25291892-25291911 None:intergenic 35.0%
GGTAAACATGGAAAAAGGTT+AGG + chr8_4:25291918-25291937 Msa1320620:three_prime_UTR 35.0%
TTTAGTGTCAACAAGTTCGA+AGG - chr8_4:25292045-25292064 None:intergenic 35.0%
TGCTTAATATACTAGGCAGA+AGG + chr8_4:25292067-25292086 Msa1320620:three_prime_UTR 35.0%
ATGTAGCAGATTCTTCTACT+TGG - chr8_4:25292168-25292187 None:intergenic 35.0%
!! CGATCAGATTTTGGGAACAA+AGG - chr8_4:25285450-25285469 None:intergenic 40.0%
! AGGAGCTACGATCAGATTTT+GGG - chr8_4:25285458-25285477 None:intergenic 40.0%
! AAGGAGCTACGATCAGATTT+TGG - chr8_4:25285459-25285478 None:intergenic 40.0%
GATGTCATGGTGAATGAAGA+AGG - chr8_4:25285478-25285497 None:intergenic 40.0%
TTCATTCACCATGACATCGT+TGG + chr8_4:25285480-25285499 Msa1320620:exon 40.0%
TCATTCACCATGACATCGTT+GGG + chr8_4:25285481-25285500 Msa1320620:exon 40.0%
GAGGAGGGAATGAAAAGAAA+CGG - chr8_4:25285556-25285575 None:intergenic 40.0%
AAACACTTGAGAGACCGTTT+GGG - chr8_4:25286211-25286230 None:intergenic 40.0%
TAAACACTTGAGAGACCGTT+TGG - chr8_4:25286212-25286231 None:intergenic 40.0%
TCCATTAAGGAAAAGGAAGG+AGG + chr8_4:25286425-25286444 Msa1320620:intron 40.0%
TGTGACTGGGATGCTTATAT+TGG + chr8_4:25286577-25286596 Msa1320620:intron 40.0%
!! TATATTGGTTTCCTACGGCT+TGG + chr8_4:25286592-25286611 Msa1320620:intron 40.0%
! AGATTTTATCACCAAGCCGT+AGG - chr8_4:25286606-25286625 None:intergenic 40.0%
! AATGACCTTCAGGATTTGGT+TGG + chr8_4:25286696-25286715 Msa1320620:intron 40.0%
! TTGGTTGGCCACATTGAAAA+AGG + chr8_4:25286711-25286730 Msa1320620:intron 40.0%
! GCAAGTTCCTTTTACCATCT+TGG + chr8_4:25286830-25286849 Msa1320620:intron 40.0%
AGCAGTACCAAGATGGTAAA+AGG - chr8_4:25286840-25286859 None:intergenic 40.0%
ATTCTCTAGCAGTACCAAGA+TGG - chr8_4:25286847-25286866 None:intergenic 40.0%
! GTGCCTACAGTTAGTTTCTA+TGG + chr8_4:25286966-25286985 Msa1320620:intron 40.0%
AGATAAAGACACGCTAAGAG+AGG + chr8_4:25287031-25287050 Msa1320620:CDS 40.0%
GATAAAGACACGCTAAGAGA+GGG + chr8_4:25287032-25287051 Msa1320620:CDS 40.0%
AAGCTACAAGAGATGACTAC+TGG - chr8_4:25287245-25287264 None:intergenic 40.0%
! AGTCATCTCTTGTAGCTTGT+TGG + chr8_4:25287247-25287266 Msa1320620:intron 40.0%
!! GTCATCTCTTGTAGCTTGTT+GGG + chr8_4:25287248-25287267 Msa1320620:intron 40.0%
!! TAGCTTGTTGGGTTATCCTT+TGG + chr8_4:25287259-25287278 Msa1320620:intron 40.0%
TAAAAGGATCTTCAGTAGGG+TGG - chr8_4:25287544-25287563 None:intergenic 40.0%
! ACCCTACTGAAGATCCTTTT+AGG + chr8_4:25287543-25287562 Msa1320620:intron 40.0%
CTCCTAAAAGGATCTTCAGT+AGG - chr8_4:25287548-25287567 None:intergenic 40.0%
GAAAAGATGGTAAGGAAGAG+CGG - chr8_4:25287611-25287630 None:intergenic 40.0%
TGCAAGATTTATACGGTCAG+AGG + chr8_4:25287685-25287704 Msa1320620:intron 40.0%
CAGGATTGGGACATTCTATT+TGG + chr8_4:25288000-25288019 Msa1320620:intron 40.0%
GGGGAAATTGACAAATCACA+AGG - chr8_4:25288487-25288506 None:intergenic 40.0%
!!! TTTCACCGACTAGTTTTGCT+TGG + chr8_4:25288653-25288672 Msa1320620:intron 40.0%
AACTATGGGATTCATACGGA+TGG - chr8_4:25288883-25288902 None:intergenic 40.0%
GACCATCATAGGAAATGACA+AGG - chr8_4:25288920-25288939 None:intergenic 40.0%
CAATGCAGTTAGAATAGGAC+AGG - chr8_4:25289111-25289130 None:intergenic 40.0%
GTTAACCCAATCAAAAGGGA+AGG + chr8_4:25289347-25289366 Msa1320620:intron 40.0%
!! CTTCTCCTTCCCTTTTGATT+GGG - chr8_4:25289355-25289374 None:intergenic 40.0%
! TCTTCTCCTTCCCTTTTGAT+TGG - chr8_4:25289356-25289375 None:intergenic 40.0%
TATAGTAAGGTTCTTCCTGG+TGG - chr8_4:25289401-25289420 None:intergenic 40.0%
AACAGCAACACCCACTAAAT+GGG - chr8_4:25289485-25289504 None:intergenic 40.0%
TCAGAAGAAAACAATGGCAC+GGG - chr8_4:25289920-25289939 None:intergenic 40.0%
GAATCCATATCCTCTAGTGA+AGG + chr8_4:25289938-25289957 Msa1320620:intron 40.0%
GATATTAGTCCCTTCACTAG+AGG - chr8_4:25289951-25289970 None:intergenic 40.0%
GCCAATATGCTTTGACATTC+AGG + chr8_4:25290670-25290689 Msa1320620:intron 40.0%
CAGGGAAACTTAACTACAAG+AGG + chr8_4:25290908-25290927 Msa1320620:CDS 40.0%
AAAAGCTGGACAGAAGAAAG+AGG + chr8_4:25290965-25290984 Msa1320620:CDS 40.0%
AGGAAAATAAGAAGGGGGTT+GGG - chr8_4:25291014-25291033 None:intergenic 40.0%
GAACGACTCCTACAATTGAA+AGG - chr8_4:25291066-25291085 None:intergenic 40.0%
! TTCGAAGAGTGATGATGATC+TGG + chr8_4:25291083-25291102 Msa1320620:CDS 40.0%
TCCTTCTCTCTTCACTTTCT+TGG - chr8_4:25291116-25291135 None:intergenic 40.0%
AGTGAAGAGAGAAGGAGAAA+AGG + chr8_4:25291120-25291139 Msa1320620:CDS 40.0%
! GTTTTTGTTGCAGGATAGAC+CGG + chr8_4:25291209-25291228 Msa1320620:intron 40.0%
! TAATGGTTTGCCAAATCGCT+AGG + chr8_4:25291485-25291504 Msa1320620:intron 40.0%
ACTTTCCTAACCTAGCGATT+TGG - chr8_4:25291498-25291517 None:intergenic 40.0%
GCTTAAATCTGACCCATTGT+TGG - chr8_4:25291584-25291603 None:intergenic 40.0%
CAATGGGTCAGATTTAAGCA+AGG + chr8_4:25291585-25291604 Msa1320620:intron 40.0%
!! ATTTTCAGGAAAGAGGGCTT+TGG + chr8_4:25291756-25291775 Msa1320620:intron 40.0%
ACATAGACGAGTTTCTTGAG+GGG + chr8_4:25291830-25291849 Msa1320620:CDS 40.0%
GAGCTGGTAAACATGGAAAA+AGG + chr8_4:25291913-25291932 Msa1320620:three_prime_UTR 40.0%
GAAGAATCTGCTACATGTTC+TGG + chr8_4:25292172-25292191 Msa1320620:three_prime_UTR 40.0%
AGCACTAGCACTTAAACGAG+TGG - chr8_4:25285269-25285288 None:intergenic 45.0%
CTCTTCTCTGTCGAATATCG+CGG - chr8_4:25285518-25285537 None:intergenic 45.0%
CAGTATCAGGCTCATATTCG+AGG + chr8_4:25285629-25285648 Msa1320620:CDS 45.0%
CCTATTGTCCATTCCCAAAC+AGG - chr8_4:25286333-25286352 None:intergenic 45.0%
CCTGTTTGGGAATGGACAAT+AGG + chr8_4:25286330-25286349 Msa1320620:intron 45.0%
! GCCTCCTTCCTTTTCCTTAA+TGG - chr8_4:25286429-25286448 None:intergenic 45.0%
CAGGGGGTTGTTTGAATTTC+CGG - chr8_4:25286461-25286480 None:intergenic 45.0%
ACATGCACGGTTTATAGCAG+GGG - chr8_4:25286478-25286497 None:intergenic 45.0%
GACATGCACGGTTTATAGCA+GGG - chr8_4:25286479-25286498 None:intergenic 45.0%
TGACATGCACGGTTTATAGC+AGG - chr8_4:25286480-25286499 None:intergenic 45.0%
GTGATCTGTCAGAAGTCTGA+TGG + chr8_4:25286645-25286664 Msa1320620:intron 45.0%
CACAGTAAGCTGAAATGCCA+TGG - chr8_4:25286887-25286906 None:intergenic 45.0%
ACACGCTAAGAGAGGGATAT+AGG + chr8_4:25287039-25287058 Msa1320620:CDS 45.0%
ACGGTCAGAGGAAGATGATA+TGG + chr8_4:25287697-25287716 Msa1320620:CDS 45.0%
GACATGTCACAGTACAAGAG+TGG + chr8_4:25288386-25288405 Msa1320620:CDS 45.0%
GTCACAGTACAAGAGTGGTA+AGG + chr8_4:25288391-25288410 Msa1320620:CDS 45.0%
TCTCAGATGGAGAACAGAGA+AGG + chr8_4:25288599-25288618 Msa1320620:CDS 45.0%
ACAGAGAAGGAAGTCATGTC+TGG + chr8_4:25288612-25288631 Msa1320620:CDS 45.0%
AAGGAAGTCATGTCTGGCAA+AGG + chr8_4:25288618-25288637 Msa1320620:CDS 45.0%
! GTCATGTCTGGCAAAGGTAT+TGG + chr8_4:25288624-25288643 Msa1320620:intron 45.0%
ACTAAATGGGGACAGCTACA+TGG - chr8_4:25289472-25289491 None:intergenic 45.0%
ATGTAGCTGTCCCCATTTAG+TGG + chr8_4:25289471-25289490 Msa1320620:intron 45.0%
TGTAGCTGTCCCCATTTAGT+GGG + chr8_4:25289472-25289491 Msa1320620:intron 45.0%
ACAGCAACACCCACTAAATG+GGG - chr8_4:25289484-25289503 None:intergenic 45.0%
CAACAGCAACACCCACTAAA+TGG - chr8_4:25289486-25289505 None:intergenic 45.0%
AGTCCCTTCACTAGAGGATA+TGG - chr8_4:25289945-25289964 None:intergenic 45.0%
CTACAAGAGGCAGAAAGAGA+AGG + chr8_4:25290921-25290940 Msa1320620:CDS 45.0%
GAGGTGAGAAACGAGAACAT+TGG + chr8_4:25290984-25291003 Msa1320620:intron 45.0%
GAAAATAAGAAGGGGGTTGG+GGG - chr8_4:25291012-25291031 None:intergenic 45.0%
GGAAAATAAGAAGGGGGTTG+GGG - chr8_4:25291013-25291032 None:intergenic 45.0%
GAGGAAAATAAGAAGGGGGT+TGG - chr8_4:25291015-25291034 None:intergenic 45.0%
! AGTGATGATGATCTGGACGA+GGG + chr8_4:25291090-25291109 Msa1320620:CDS 45.0%
GCCAAGAAAGTGAAGAGAGA+AGG + chr8_4:25291112-25291131 Msa1320620:CDS 45.0%
GTTTGCCAAATCGCTAGGTT+AGG + chr8_4:25291490-25291509 Msa1320620:intron 45.0%
GCATTTCTTGAGACAAGAGC+TGG + chr8_4:25291897-25291916 Msa1320620:three_prime_UTR 45.0%
GAGACAAGAGCTGGTAAACA+TGG + chr8_4:25291906-25291925 Msa1320620:three_prime_UTR 45.0%
GAAAAAGGTTAGGCAGTGCT+GGG + chr8_4:25291928-25291947 Msa1320620:three_prime_UTR 45.0%
!!! TTTTATTTTTTTTCTTTTTT+TGG - chr8_4:25287475-25287494 None:intergenic 5.0%
!! ATATAATAATTTATCTAAAA+TGG + chr8_4:25288251-25288270 Msa1320620:intron 5.0%
!!! TTTTTTTTTTAAATAATTGA+AGG + chr8_4:25290827-25290846 Msa1320620:intron 5.0%
CGAAGAGAGGATTGCGAAAC+TGG + chr8_4:25285379-25285398 Msa1320620:five_prime_UTR 50.0%
CAGAGATCCCAACGATGTCA+TGG - chr8_4:25285491-25285510 None:intergenic 50.0%
CATGCACGGTTTATAGCAGG+GGG - chr8_4:25286477-25286496 None:intergenic 50.0%
TGTGGCCAACCAAATCCTGA+AGG - chr8_4:25286704-25286723 None:intergenic 50.0%
TGGATCCATCATGGGAGCAA+AGG + chr8_4:25287717-25287736 Msa1320620:CDS 50.0%
TCAGCTCTTCTTGAGGGCTA+AGG + chr8_4:25289726-25289745 Msa1320620:intron 50.0%
ATGGCACGGGCAACAAAACT+TGG - chr8_4:25289907-25289926 None:intergenic 50.0%
!! GGCAGGAAGCATTATCCAGA+AGG - chr8_4:25290095-25290114 None:intergenic 50.0%
! GAGTGATGATGATCTGGACG+AGG + chr8_4:25291089-25291108 Msa1320620:CDS 50.0%
GGAAAAAGGTTAGGCAGTGC+TGG + chr8_4:25291927-25291946 Msa1320620:three_prime_UTR 50.0%
TGGGAGCAAGTGGATAATGC+AGG + chr8_4:25291947-25291966 Msa1320620:three_prime_UTR 50.0%
GGAAGGAGGCTACAGTCATC+CGG + chr8_4:25286439-25286458 Msa1320620:intron 55.0%
TCCATCATGGGAGCAAAGGC+TGG + chr8_4:25287721-25287740 Msa1320620:CDS 55.0%
ACCAGCCTTTGCTCCCATGA+TGG - chr8_4:25287725-25287744 None:intergenic 55.0%
! TAGGCAGTGCTGGGAGCAAG+TGG + chr8_4:25291937-25291956 Msa1320620:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 25285262 25292292 25285262 ID=Msa1320620;Name=Msa1320620
chr8_4 mRNA 25285262 25292292 25285262 ID=Msa1320620-mRNA-1;Parent=Msa1320620;Name=Msa1320620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=228|1|1|1|0.9|0.90|11|428|251
chr8_4 exon 25285262 25285545 25285262 ID=Msa1320620-mRNA-1:exon:8665;Parent=Msa1320620-mRNA-1
chr8_4 exon 25285628 25285695 25285628 ID=Msa1320620-mRNA-1:exon:8666;Parent=Msa1320620-mRNA-1
chr8_4 exon 25286976 25287060 25286976 ID=Msa1320620-mRNA-1:exon:8667;Parent=Msa1320620-mRNA-1
chr8_4 exon 25287691 25287774 25287691 ID=Msa1320620-mRNA-1:exon:8668;Parent=Msa1320620-mRNA-1
chr8_4 exon 25288373 25288412 25288373 ID=Msa1320620-mRNA-1:exon:8669;Parent=Msa1320620-mRNA-1
chr8_4 exon 25288594 25288639 25288594 ID=Msa1320620-mRNA-1:exon:8670;Parent=Msa1320620-mRNA-1
chr8_4 exon 25289218 25289276 25289218 ID=Msa1320620-mRNA-1:exon:8671;Parent=Msa1320620-mRNA-1
chr8_4 exon 25289815 25289882 25289815 ID=Msa1320620-mRNA-1:exon:8672;Parent=Msa1320620-mRNA-1
chr8_4 exon 25290903 25290986 25290903 ID=Msa1320620-mRNA-1:exon:8673;Parent=Msa1320620-mRNA-1
chr8_4 exon 25291077 25291141 25291077 ID=Msa1320620-mRNA-1:exon:8674;Parent=Msa1320620-mRNA-1
chr8_4 exon 25291764 25292292 25291764 ID=Msa1320620-mRNA-1:exon:8675;Parent=Msa1320620-mRNA-1
chr8_4 five_prime_UTR 25285262 25285489 25285262 ID=Msa1320620-mRNA-1:five_prime_utr;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25285490 25285545 25285490 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25285628 25285695 25285628 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25286976 25287060 25286976 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25287691 25287774 25287691 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25288373 25288412 25288373 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25288594 25288639 25288594 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25289218 25289276 25289218 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25289815 25289882 25289815 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25290903 25290986 25290903 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25291077 25291141 25291077 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 CDS 25291764 25291864 25291764 ID=Msa1320620-mRNA-1:cds;Parent=Msa1320620-mRNA-1
chr8_4 three_prime_UTR 25291865 25292292 25291865 ID=Msa1320620-mRNA-1:three_prime_utr;Parent=Msa1320620-mRNA-1
Gene Sequence

>Msa1320620

ATGACATCGTTGGGATCTCTGAAATCCGCGATATTCGACAGAGAAGAGAGAAAACAACAGTATCAGGCTCATATTCGAGGTCTTAATGCATACGATCGCCACAAAAAGTTTATCAACGATTACGTTAGTTTCTATGGGAAAGAAGAAAAACCTTCAACCTTAAAGTTGCCTATTAAAACAGATAAAGACACGCTAAGAGAGGGATATAGATTTATACGGTCAGAGGAAGATGATATGGATCCATCATGGGAGCAAAGGCTGGTGAAGCGTTATTATGCTAAGCTTTTTAAGGAATACTGTCTTGCTGACATGTCACAGTACAAGAGTGGTAAGATTGGTCTCAGATGGAGAACAGAGAAGGAAGTCATGTCTGGCAAAGGTCAGTTTATATGCGGCAACAAGCATTGCAATGAGAAAGATGGATTAGCAAGCTACGAGGTGAACTTTTGTTATTTTGAAGCAGGAGAGAACAAACAAGCTCTAGTTAAATTGGTAGCATGTGAGAGATGTGCAGGGAAACTTAACTACAAGAGGCAGAAAGAGAAGGAGCAATTAGAAAGAAGACAACAAAAGCTGGACAGAAGAAAGAGGAGTCGTTCGAAGAGTGATGATGATCTGGACGAGGGCCAAGAAAGTGAAGAGAGAAGGAGAAAAGGAAAGAGGGCTTTGGTTTCAGCCAGTGATCATAAAATTGATGATGATAATGATTCTGATGATGATAACATAGACGAGTTTCTTGAGGGGATGTTTCCCTGA

Protein sequence

>Msa1320620

MTSLGSLKSAIFDREERKQQYQAHIRGLNAYDRHKKFINDYVSFYGKEEKPSTLKLPIKTDKDTLREGYRFIRSEEDDMDPSWEQRLVKRYYAKLFKEYCLADMSQYKSGKIGLRWRTEKEVMSGKGQFICGNKHCNEKDGLASYEVNFCYFEAGENKQALVKLVACERCAGKLNYKRQKEKEQLERRQQKLDRRKRSRSKSDDDLDEGQESEERRRKGKRALVSASDHKIDDDNDSDDDNIDEFLEGMFP*