AlfalfaGEDB | Msa1052360

M. sativa cultivar zhongmu-4 / Msa1052360

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0008150 GO:0010817 GO:0016020 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:2000012
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1052360	XP_003621746.2	97.347	377	9	1	1	376	1	377	0.0	757

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1052360	sp\|Q5XV40\|LAZY1_ARATH	34.961	389	203	15	1	376	1	352	6.62e-42	154

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1052360	G7KUR7	97.347	377	9	1	1	376	1	377	0.0	757

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032320	Msa1052360	0.805879	1.078798e-49	-8.615850e-47
Msa0050990	Msa1052360	0.801501	8.738451e-49	-8.615850e-47
Msa0197100	Msa1052360	0.819140	1.357613e-52	-8.615850e-47
Msa0212150	Msa1052360	0.871722	5.503339e-67	-8.615850e-47
Msa0213040	Msa1052360	0.829859	4.066539e-55	-8.615850e-47
Msa0218780	Msa1052360	0.816568	5.170865e-52	-8.615850e-47
Msa0221290	Msa1052360	0.803425	3.508499e-49	-8.615850e-47
Msa0239030	Msa1052360	0.834694	2.584315e-56	-8.615850e-47
Msa0239800	Msa1052360	0.801823	7.505904e-49	-8.615850e-47
Msa0252770	Msa1052360	0.843934	1.032500e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1052360	MtrunA17_Chr7g0222391	97.347	377	9	1	1	376	1	377	0.0	757
Msa1052360	MtrunA17_Chr3g0122881	44.524	420	134	19	1	376	1	365	1.91e-77	244
Msa1052360	MtrunA17_Chr7g0224731	34.430	395	181	20	1	376	1	336	1.13e-43	155
Msa1052360	MtrunA17_Chr7g0224671	29.496	417	185	18	1	378	18	364	6.13e-27	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1052360	AT5G14090.1	34.961	389	203	15	1	376	1	352	6.73e-43	154
Msa1052360	AT5G14090.2	39.130	253	125	9	1	252	1	225	2.16e-38	140

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Find 85 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACATAGGACTTCACT+TGG	0.618977	7_2:+20564346	Msa1052360:CDS
AACTTCAGAAAATCATTTGC+TGG	0.355575	7_2:+20563842	Msa1052360:CDS
AATGATGGAGGTCCCAACAA+AGG	0.636070	7_2:+20566157	Msa1052360:CDS
AATGCTGTTTGTCCTTTACA+AGG	0.501835	7_2:+20564265	Msa1052360:CDS
AATTCTTGCAATTGTCTATC+AGG	0.255482	7_2:+20563731	Msa1052360:CDS
AATTTGATAAGAGAAATGAA+AGG	0.630350	7_2:+20564431	Msa1052360:CDS
ACATACTATGAGGCAGACAT+TGG	0.560655	7_2:-20567321	None:intergenic
ACATTACACATTACTAATAG+AGG	0.506557	7_2:-20567205	None:intergenic
AGAAACAGCCATGTCAGCAC+TGG	0.552963	7_2:+20564157	Msa1052360:CDS
AGAAGTAGCCATGTCAGCAC+TGG	0.514813	7_2:+20564181	Msa1052360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAGAACCATTCAAAGATT+TGG	+	chr7_2:20562701-20562720	Msa1052360:CDS	30.0%
GTTAGGTAAATTGTCTTCTT+GGG	-	chr7_2:20563199-20563218	None:intergenic	30.0%
TGTTAGGTAAATTGTCTTCT+TGG	-	chr7_2:20563200-20563219	None:intergenic	30.0%
TATTTGAGGACCTTTAAACA+TGG	-	chr7_2:20563584-20563603	None:intergenic	30.0%
AATTCTTGCAATTGTCTATC+AGG	+	chr7_2:20563731-20563750	Msa1052360:CDS	30.0%
ATTCTTGCAATTGTCTATCA+GGG	+	chr7_2:20563732-20563751	Msa1052360:CDS	30.0%
TTGAATCTGATTCCAAGATT+TGG	-	chr7_2:20563797-20563816	None:intergenic	30.0%
AACTTCAGAAAATCATTTGC+TGG	+	chr7_2:20563842-20563861	Msa1052360:CDS	30.0%
GAAGAACATGAAGAAGAATA+TGG	+	chr7_2:20563881-20563900	Msa1052360:CDS	30.0%
TGAACTGAGATTTGAAAAGA+TGG	-	chr7_2:20564010-20564029	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	20562520	20567755	20562520	ID=Msa1052360;Name=Msa1052360
chr7_2	mRNA	20562520	20567755	20562520	ID=Msa1052360-mRNA-1;Parent=Msa1052360;Name=Msa1052360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34\|0.75\|0.8\|1\|1\|1\|5\|531\|402
chr7_2	exon	20562520	20562559	20562520	ID=Msa1052360-mRNA-1:exon:4605;Parent=Msa1052360-mRNA-1
chr7_2	exon	20562660	20562729	20562660	ID=Msa1052360-mRNA-1:exon:4606;Parent=Msa1052360-mRNA-1
chr7_2	exon	20563729	20564591	20563729	ID=Msa1052360-mRNA-1:exon:4607;Parent=Msa1052360-mRNA-1
chr7_2	exon	20566058	20566251	20566058	ID=Msa1052360-mRNA-1:exon:4608;Parent=Msa1052360-mRNA-1
chr7_2	exon	20567149	20567755	20567149	ID=Msa1052360-mRNA-1:exon:4609;Parent=Msa1052360-mRNA-1
chr7_2	five_prime_UTR	20562520	20562553	20562520	ID=Msa1052360-mRNA-1:five_prime_utr;Parent=Msa1052360-mRNA-1
chr7_2	CDS	20562554	20562559	20562554	ID=Msa1052360-mRNA-1:cds;Parent=Msa1052360-mRNA-1
chr7_2	CDS	20562660	20562729	20562660	ID=Msa1052360-mRNA-1:cds;Parent=Msa1052360-mRNA-1
chr7_2	CDS	20563729	20564591	20563729	ID=Msa1052360-mRNA-1:cds;Parent=Msa1052360-mRNA-1
chr7_2	CDS	20566058	20566251	20566058	ID=Msa1052360-mRNA-1:cds;Parent=Msa1052360-mRNA-1
chr7_2	CDS	20567149	20567224	20567149	ID=Msa1052360-mRNA-1:cds;Parent=Msa1052360-mRNA-1
chr7_2	three_prime_UTR	20567225	20567755	20567225	ID=Msa1052360-mRNA-1:three_prime_utr;Parent=Msa1052360-mRNA-1

Gene Sequence

>Msa1052360

ATGACGTTACTTGGCTGGATGCATAGGAAATTTCGTCAGAATAGTAGTACAGAACCATTCAAAGATTTGGTCATTGGAAATTCTTGCAATTGTCTATCAGGGCAACCATCACTTGATGAAGAACAAAACTATCATCAAAAACCAAATCTTGGAATCAGATTCAACAAACAAACACAAAAACCTCAAAACAACTTCAGAAAATCATTTGCTGGTCTAGAATCAACAAGAGAAGAACATGAAGAAGAATATGGAAGACAATCACAAGATGATGATGCTATGTTTGATCTCTTCCCTGGTTTCCTTGCAATTGGAACACTTGGATCAGACCAACCAATTTCATCGAATCCATCGACACCATCTTTTCAAATCTCAGTTCAAACCATAACCGAAAATGAAAACGAAGACGAAGTAACTGAAAATGATCTCAAACTCATCAATGATGAGTTAGAGAAAGTTCTTGGTGCTGAAACAAAAGATGATGTACTAAGCTATGATTCTTCAAGCAGAAACAGCCATGTCAGCACTGGAAGAAGTAGCCATGTCAGCACTGGAAGAAGTAGCCATGTCAGCATAGTAACAATAAGTGGAAAACCAATTGAAGGAACAGACACAAATGCTGTTTGTCCTTTACAAGGTTATTTGTTTGGAACAGCTGTTGAAATGTCTGAAACAGCAGTTACTAGTGTTGGTAAGAAAGAACATAGGACTTCACTTGGTGAACTTTTTCAGAGAAGTAAATTGGCTGATGAGATTTCTTTTGGAATGAAATTTGAAAAAGAATTTGATAAGAGAAATGAAAGGGATTCTGAGAAGTATTCTGCTTTGAATATGGTGAAAGAAAAACTGAAAAAAAAAATGTTTCATTCATGTTCTAAAAATTCTTCATCTACAAATGGTGCAAGTGTTGATTCTGCTTCAGCTGAGACTAAACTCAACAAGATTCTCCATATGTTCCGGAAAAAAGTTCATCCAGAAAGTTCAACAGTTGGACACAAATCTGGCAAACATCGAAAGAATGAGAACAAGAAGAAAAATATGAATGATGGAGGTCCCAACAAAGGCTACGTTGTGCATCCAGAGGAAGATTCATCTTCTTACAGGGAGCATTGGATCAAAACAGATGCAGATTGTAAATTTAGTTCTAGAGCTTTGAATGGCAAAGAAGAAATTGGGTTGTTTAAGTTGTTATCCTCTATTAGTAATGTGTAA

Protein sequence

>Msa1052360

MTLLGWMHRKFRQNSSTEPFKDLVIGNSCNCLSGQPSLDEEQNYHQKPNLGIRFNKQTQKPQNNFRKSFAGLESTREEHEEEYGRQSQDDDAMFDLFPGFLAIGTLGSDQPISSNPSTPSFQISVQTITENENEDEVTENDLKLINDELEKVLGAETKDDVLSYDSSSRNSHVSTGRSSHVSTGRSSHVSIVTISGKPIEGTDTNAVCPLQGYLFGTAVEMSETAVTSVGKKEHRTSLGELFQRSKLADEISFGMKFEKEFDKRNERDSEKYSALNMVKEKLKKKMFHSCSKNSSSTNGASVDSASAETKLNKILHMFRKKVHPESSTVGHKSGKHRKNENKKKNMNDGGPNKGYVVHPEEDSSSYREHWIKTDADCKFSSRALNGKEEIGLFKLLSSISNV*