Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079210 | XP_003625620.1 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079210 | Q2HV37 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1003740 | Msa1079210 | 0.801303 | 9.595635e-49 | -8.615850e-47 |
| Msa1079210 | Msa1124090 | 0.974949 | 4.576184e-139 | -8.615850e-47 |
| Msa1079210 | Msa1168970 | 0.989718 | 2.437412e-179 | -8.615850e-47 |
| Msa1079210 | Msa1169060 | 0.988050 | 1.595687e-172 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079210 | MtrunA17_Chr7g0264051 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Msa1079210 | MtrunA17_Chr1g0181361 | 49.587 | 484 | 201 | 15 | 2 | 463 | 4 | 466 | 4.19e-146 | 426 |
| Msa1079210 | MtrunA17_Chr7g0243581 | 26.020 | 392 | 270 | 7 | 89 | 461 | 95 | 485 | 6.90e-38 | 144 |
| Msa1079210 | MtrunA17_Chr4g0004961 | 25.952 | 420 | 263 | 10 | 84 | 461 | 94 | 507 | 9.22e-38 | 144 |
| Msa1079210 | MtrunA17_Chr3g0106481 | 24.172 | 513 | 320 | 14 | 1 | 461 | 1 | 496 | 2.66e-34 | 134 |
| Msa1079210 | MtrunA17_Chr3g0133101 | 24.432 | 352 | 200 | 13 | 126 | 464 | 89 | 387 | 1.85e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1079210 | AT3G53400.1 | 45.963 | 483 | 226 | 12 | 1 | 465 | 1 | 466 | 5.92e-134 | 395 |
| Msa1079210 | AT5G03190.1 | 43.856 | 472 | 237 | 11 | 1 | 465 | 1 | 451 | 4.14e-126 | 374 |
| Msa1079210 | AT5G03190.2 | 43.384 | 461 | 233 | 11 | 12 | 465 | 36 | 475 | 2.05e-121 | 363 |
| Msa1079210 | AT5G01710.1 | 24.777 | 448 | 283 | 10 | 62 | 463 | 74 | 513 | 1.70e-39 | 149 |
| Msa1079210 | AT1G24480.1 | 27.957 | 186 | 121 | 5 | 60 | 238 | 55 | 234 | 2.45e-12 | 67.0 |
Find 81 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATTTCCAGATCCTTAA+TGG | 0.174169 | 7_2:+78259565 | Msa1079210:CDS |
| GTCGAATCGTTGACCCATTA+AGG | 0.243046 | 7_2:-78259579 | None:intergenic |
| CGCTTTATCAAACTATGATT+TGG | 0.264575 | 7_2:+78259660 | Msa1079210:CDS |
| CATTAAGGATCTGGAAATTC+AGG | 0.297496 | 7_2:-78259564 | None:intergenic |
| GGTTGGTTTATATTGATATT+GGG | 0.306403 | 7_2:+78260427 | Msa1079210:CDS |
| AGGTTGGTTTATATTGATAT+TGG | 0.318319 | 7_2:+78260426 | Msa1079210:CDS |
| GATTCGATTCTGAAAGAAAT+AGG | 0.318467 | 7_2:-78259749 | None:intergenic |
| ATTTCTTTCAGAATCGAATC+TGG | 0.324960 | 7_2:+78259752 | Msa1079210:CDS |
| TTGAAAGCTTTCTGATCAAT+AGG | 0.326104 | 7_2:-78260501 | None:intergenic |
| GAATGTGGTCACTGAGTTAA+TGG | 0.342946 | 7_2:+78259813 | Msa1079210:CDS |
| ATCACGTTTGTTTATCATCC+TGG | 0.389501 | 7_2:+78260582 | Msa1079210:CDS |
| GTTCTTAAGCCTAATGGAAT+TGG | 0.390560 | 7_2:+78260084 | Msa1079210:CDS |
| CCCTGCTTTGCTTGTTCTTG+AGG | 0.393326 | 7_2:+78260053 | Msa1079210:CDS |
| CATTTGATTTCGTATTGTCT+AGG | 0.400138 | 7_2:+78260010 | Msa1079210:CDS |
| GATCTCAACAATGATGAAAC+TGG | 0.404198 | 7_2:-78260165 | None:intergenic |
| TTCCTTGTTTGTCAAGGCAT+TGG | 0.407341 | 7_2:-78260856 | None:intergenic |
| TTATCACCATCTTCTTTCTC+AGG | 0.407873 | 7_2:-78260831 | None:intergenic |
| AACGATATTCTTCATCTTGA+GGG | 0.413335 | 7_2:-78259962 | None:intergenic |
| TGAATTTCCAGATCCTTAAT+GGG | 0.414241 | 7_2:+78259566 | Msa1079210:CDS |
| CATCAGATCTACGAGAGGTT+TGG | 0.414748 | 7_2:-78260325 | None:intergenic |
| GAGCGTGTTCTTAAGCCTAA+TGG | 0.420052 | 7_2:+78260078 | Msa1079210:CDS |
| AGCCTCAGCAGCGACTTTAC+CGG | 0.421933 | 7_2:-78260610 | None:intergenic |
| GGAATTGGTGCACTTCTTGT+TGG | 0.423934 | 7_2:+78260099 | Msa1079210:CDS |
| TGTTGGTGAAGGTTCTTCAA+TGG | 0.432990 | 7_2:+78259873 | Msa1079210:CDS |
| ATTGTCTAGGGATCTTGATA+AGG | 0.440951 | 7_2:+78260023 | Msa1079210:CDS |
| TCGTTGACCCATTAAGGATC+TGG | 0.450738 | 7_2:-78259573 | None:intergenic |
| ATTTGATTTCGTATTGTCTA+GGG | 0.451800 | 7_2:+78260011 | Msa1079210:CDS |
| ACCTCAAGAACAAGCAAAGC+AGG | 0.456915 | 7_2:-78260054 | None:intergenic |
| AACTCTTCCTCCCCAACAAA+AGG | 0.457530 | 7_2:-78260660 | None:intergenic |
| AAGAGTTTGATTTCCTTGCC+TGG | 0.462393 | 7_2:+78260676 | Msa1079210:CDS |
| GTTAAAGCAATGAAACAGTT+GGG | 0.467346 | 7_2:+78259898 | Msa1079210:CDS |
| AACTTAGGCAAATATGAAAC+CGG | 0.474561 | 7_2:-78260381 | None:intergenic |
| TGTGTATGTGCATCAATTGT+GGG | 0.474661 | 7_2:+78260917 | Msa1079210:CDS |
| TTTCTTTCAGAATCGAATCT+GGG | 0.479609 | 7_2:+78259753 | Msa1079210:CDS |
| AAGAAGCGCAATCATTGAAA+TGG | 0.479695 | 7_2:-78259635 | None:intergenic |
| GTTTATCATCCTGGATTAGC+CGG | 0.485999 | 7_2:+78260591 | Msa1079210:CDS |
| TGAATGCAAATGTTAGTGAT+TGG | 0.490906 | 7_2:+78260463 | Msa1079210:CDS |
| CAAACCTCTCGTAGATCTGA+TGG | 0.493210 | 7_2:+78260326 | Msa1079210:CDS |
| GTTGTACTCAAGATGAATGC+AGG | 0.496244 | 7_2:+78260729 | Msa1079210:CDS |
| TATGAAACCGGCATCGGCAT+CGG | 0.497449 | 7_2:-78260369 | None:intergenic |
| ATTCTGAAAGAAATAGGAAG+TGG | 0.500053 | 7_2:-78259743 | None:intergenic |
| TTCTGATCAATAGGATATGA+AGG | 0.501367 | 7_2:-78260492 | None:intergenic |
| CAGTTTCTTTGAACCAGGCA+AGG | 0.506755 | 7_2:-78260689 | None:intergenic |
| GTTGGTTTATATTGATATTG+GGG | 0.508956 | 7_2:+78260428 | Msa1079210:CDS |
| AGAAGTGCACCAATTCCATT+AGG | 0.511486 | 7_2:-78260093 | None:intergenic |
| AAACGATATTCTTCATCTTG+AGG | 0.511737 | 7_2:-78259963 | None:intergenic |
| TAATGTCGGAGACGGAGAGC+TGG | 0.513267 | 7_2:+78260635 | Msa1079210:CDS |
| GTTTATATTGATATTGGGGT+AGG | 0.516469 | 7_2:+78260432 | Msa1079210:CDS |
| TGTTAAAGCAATGAAACAGT+TGG | 0.517899 | 7_2:+78259897 | Msa1079210:CDS |
| GCGACTTTACCGGCTAATCC+AGG | 0.522388 | 7_2:-78260600 | None:intergenic |
| TGTTTCTACTAGGAAGAGGT+TGG | 0.531207 | 7_2:+78260410 | Msa1079210:CDS |
| AGTTTGTAGATGTTTCTACT+AGG | 0.532167 | 7_2:+78260400 | Msa1079210:CDS |
| GGCAAATATGAAACCGGCAT+CGG | 0.532678 | 7_2:-78260375 | None:intergenic |
| TAGATGTTTCTACTAGGAAG+AGG | 0.535930 | 7_2:+78260406 | Msa1079210:CDS |
| TTCTGAAAGAAATAGGAAGT+GGG | 0.537629 | 7_2:-78259742 | None:intergenic |
| TTGCACAGTTTCTTTGAACC+AGG | 0.540355 | 7_2:-78260694 | None:intergenic |
| GGTTTGGTTAATGTCAAACT+AGG | 0.546298 | 7_2:-78260309 | None:intergenic |
| GTGTGTATGTGCATCAATTG+TGG | 0.551180 | 7_2:+78260916 | Msa1079210:CDS |
| AGATGTCCTGAGAAAGAAGA+TGG | 0.561930 | 7_2:+78260825 | Msa1079210:CDS |
| AATGTGGTCACTGAGTTAAT+GGG | 0.566533 | 7_2:+78259814 | Msa1079210:CDS |
| GTAGAAACATCTACAAACTT+AGG | 0.572228 | 7_2:-78260396 | None:intergenic |
| TTCTTTCAGAATCGAATCTG+GGG | 0.582119 | 7_2:+78259754 | Msa1079210:CDS |
| AATACCCTCTGTGTTGGTGA+AGG | 0.584957 | 7_2:+78259862 | Msa1079210:CDS |
| GACAAACAAGGAAAATTGCA+TGG | 0.587363 | 7_2:+78260866 | Msa1079210:CDS |
| TTGTCTTACGTGAAGAGACC+TGG | 0.587754 | 7_2:+78260558 | Msa1079210:CDS |
| CGTTAACTTGACAGTGAATG+TGG | 0.591281 | 7_2:+78259798 | Msa1079210:CDS |
| TGATAAACAAACGTGATACC+AGG | 0.592660 | 7_2:-78260576 | None:intergenic |
| TTATCTGATGTATTTGACAG+TGG | 0.598424 | 7_2:+78260771 | Msa1079210:CDS |
| GAGGCTGATAATGTCGGAGA+CGG | 0.602304 | 7_2:+78260627 | Msa1079210:CDS |
| GCTGCTGAGGCTGATAATGT+CGG | 0.602809 | 7_2:+78260621 | Msa1079210:CDS |
| GTCAAACTAGGACAATCAGC+AGG | 0.603229 | 7_2:-78260297 | None:intergenic |
| AACCAATGCCTTGACAAACA+AGG | 0.613471 | 7_2:+78260854 | Msa1079210:CDS |
| AGCCGGTAAAGTCGCTGCTG+AGG | 0.614776 | 7_2:+78260608 | Msa1079210:CDS |
| TCTGAAAGAAATAGGAAGTG+GGG | 0.627270 | 7_2:-78259741 | None:intergenic |
| CCTCAAGAACAAGCAAAGCA+GGG | 0.639198 | 7_2:-78260053 | None:intergenic |
| GAAGCGAATACCCTCTGTGT+TGG | 0.663485 | 7_2:+78259856 | Msa1079210:CDS |
| AGAACCTTCACCAACACAGA+GGG | 0.664286 | 7_2:-78259866 | None:intergenic |
| AAGAACCTTCACCAACACAG+AGG | 0.674044 | 7_2:-78259867 | None:intergenic |
| TACACAAGTCTCAGAAACAG+TGG | 0.674560 | 7_2:+78260894 | Msa1079210:CDS |
| GTGTATGTGCATCAATTGTG+GGG | 0.707496 | 7_2:+78260918 | Msa1079210:CDS |
| GGTTCCATCAGATCTACGAG+AGG | 0.709221 | 7_2:-78260330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATTTCGTATTGTCTA+GGG | + | chr7_2:78260011-78260030 | Msa1079210:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | - | chr7_2:78260233-78260252 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | + | chr7_2:78260426-78260445 | Msa1079210:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | + | chr7_2:78260427-78260446 | Msa1079210:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | + | chr7_2:78260428-78260447 | Msa1079210:CDS | 25.0% |
| !! | ATTTGATTTCGTATTGTCTA+GGG | + | chr7_2:78260011-78260030 | Msa1079210:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | - | chr7_2:78260233-78260252 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | + | chr7_2:78260426-78260445 | Msa1079210:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | + | chr7_2:78260427-78260446 | Msa1079210:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | + | chr7_2:78260428-78260447 | Msa1079210:CDS | 25.0% |
| TGAATTTCCAGATCCTTAAT+GGG | + | chr7_2:78259566-78259585 | Msa1079210:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | + | chr7_2:78259660-78259679 | Msa1079210:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | - | chr7_2:78259745-78259764 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | - | chr7_2:78259746-78259765 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | - | chr7_2:78259752-78259771 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | + | chr7_2:78259752-78259771 | Msa1079210:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | + | chr7_2:78259753-78259772 | Msa1079210:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | + | chr7_2:78259897-78259916 | Msa1079210:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | + | chr7_2:78259898-78259917 | Msa1079210:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | + | chr7_2:78259916-78259935 | Msa1079210:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | - | chr7_2:78259965-78259984 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | - | chr7_2:78259966-78259985 | None:intergenic | 30.0% | |
| ! | CATTTGATTTCGTATTGTCT+AGG | + | chr7_2:78260010-78260029 | Msa1079210:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | - | chr7_2:78260384-78260403 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | - | chr7_2:78260399-78260418 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | + | chr7_2:78260400-78260419 | Msa1079210:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | + | chr7_2:78260432-78260451 | Msa1079210:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | + | chr7_2:78260463-78260482 | Msa1079210:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | - | chr7_2:78260495-78260514 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | - | chr7_2:78260504-78260523 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | + | chr7_2:78260771-78260790 | Msa1079210:CDS | 30.0% | |
| TGAATTTCCAGATCCTTAAT+GGG | + | chr7_2:78259566-78259585 | Msa1079210:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | + | chr7_2:78259660-78259679 | Msa1079210:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | - | chr7_2:78259745-78259764 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | - | chr7_2:78259746-78259765 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | - | chr7_2:78259752-78259771 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | + | chr7_2:78259752-78259771 | Msa1079210:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | + | chr7_2:78259753-78259772 | Msa1079210:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | + | chr7_2:78259897-78259916 | Msa1079210:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | + | chr7_2:78259898-78259917 | Msa1079210:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | + | chr7_2:78259916-78259935 | Msa1079210:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | - | chr7_2:78259965-78259984 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | - | chr7_2:78259966-78259985 | None:intergenic | 30.0% | |
| ! | CATTTGATTTCGTATTGTCT+AGG | + | chr7_2:78260010-78260029 | Msa1079210:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | - | chr7_2:78260384-78260403 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | - | chr7_2:78260399-78260418 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | + | chr7_2:78260400-78260419 | Msa1079210:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | + | chr7_2:78260432-78260451 | Msa1079210:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | + | chr7_2:78260463-78260482 | Msa1079210:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | - | chr7_2:78260495-78260514 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | - | chr7_2:78260504-78260523 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | + | chr7_2:78260771-78260790 | Msa1079210:CDS | 30.0% | |
| CATTAAGGATCTGGAAATTC+AGG | - | chr7_2:78259567-78259586 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | + | chr7_2:78259565-78259584 | Msa1079210:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | - | chr7_2:78259638-78259657 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | - | chr7_2:78259744-78259763 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | + | chr7_2:78259754-78259773 | Msa1079210:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | + | chr7_2:78259814-78259833 | Msa1079210:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | - | chr7_2:78259954-78259973 | None:intergenic | 35.0% | |
| ATTGTCTAGGGATCTTGATA+AGG | + | chr7_2:78260023-78260042 | Msa1079210:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | + | chr7_2:78260084-78260103 | Msa1079210:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | - | chr7_2:78260168-78260187 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | - | chr7_2:78260312-78260331 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | + | chr7_2:78260406-78260425 | Msa1079210:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | - | chr7_2:78260579-78260598 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | + | chr7_2:78260582-78260601 | Msa1079210:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | - | chr7_2:78260834-78260853 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | - | chr7_2:78260865-78260884 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | + | chr7_2:78260866-78260885 | Msa1079210:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | + | chr7_2:78260917-78260936 | Msa1079210:CDS | 35.0% | |
| CATTAAGGATCTGGAAATTC+AGG | - | chr7_2:78259567-78259586 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | + | chr7_2:78259565-78259584 | Msa1079210:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | - | chr7_2:78259638-78259657 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | - | chr7_2:78259744-78259763 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | + | chr7_2:78259754-78259773 | Msa1079210:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | + | chr7_2:78259814-78259833 | Msa1079210:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | - | chr7_2:78259954-78259973 | None:intergenic | 35.0% | |
| ATTGTCTAGGGATCTTGATA+AGG | + | chr7_2:78260023-78260042 | Msa1079210:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | + | chr7_2:78260084-78260103 | Msa1079210:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | - | chr7_2:78260168-78260187 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | - | chr7_2:78260312-78260331 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | + | chr7_2:78260406-78260425 | Msa1079210:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | - | chr7_2:78260579-78260598 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | + | chr7_2:78260582-78260601 | Msa1079210:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | - | chr7_2:78260834-78260853 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | - | chr7_2:78260865-78260884 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | + | chr7_2:78260866-78260885 | Msa1079210:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | + | chr7_2:78260917-78260936 | Msa1079210:CDS | 35.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | + | chr7_2:78259798-78259817 | Msa1079210:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | + | chr7_2:78259813-78259832 | Msa1079210:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | + | chr7_2:78259873-78259892 | Msa1079210:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | - | chr7_2:78260096-78260115 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | - | chr7_2:78260354-78260373 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | + | chr7_2:78260410-78260429 | Msa1079210:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | + | chr7_2:78260591-78260610 | Msa1079210:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | + | chr7_2:78260676-78260695 | Msa1079210:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | - | chr7_2:78260697-78260716 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | + | chr7_2:78260729-78260748 | Msa1079210:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | + | chr7_2:78260825-78260844 | Msa1079210:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | + | chr7_2:78260854-78260873 | Msa1079210:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | - | chr7_2:78260859-78260878 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | + | chr7_2:78260894-78260913 | Msa1079210:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | + | chr7_2:78260916-78260935 | Msa1079210:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | + | chr7_2:78260918-78260937 | Msa1079210:CDS | 40.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | + | chr7_2:78259798-78259817 | Msa1079210:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | + | chr7_2:78259813-78259832 | Msa1079210:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | + | chr7_2:78259873-78259892 | Msa1079210:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | - | chr7_2:78260096-78260115 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | - | chr7_2:78260354-78260373 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | + | chr7_2:78260410-78260429 | Msa1079210:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | + | chr7_2:78260591-78260610 | Msa1079210:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | + | chr7_2:78260676-78260695 | Msa1079210:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | - | chr7_2:78260697-78260716 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | + | chr7_2:78260729-78260748 | Msa1079210:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | + | chr7_2:78260825-78260844 | Msa1079210:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | + | chr7_2:78260854-78260873 | Msa1079210:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | - | chr7_2:78260859-78260878 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | + | chr7_2:78260894-78260913 | Msa1079210:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | + | chr7_2:78260916-78260935 | Msa1079210:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | + | chr7_2:78260918-78260937 | Msa1079210:CDS | 40.0% | |
| TCGTTGACCCATTAAGGATC+TGG | - | chr7_2:78259576-78259595 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | - | chr7_2:78259582-78259601 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | + | chr7_2:78259862-78259881 | Msa1079210:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | - | chr7_2:78259869-78259888 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | - | chr7_2:78259870-78259889 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | - | chr7_2:78259950-78259969 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | - | chr7_2:78260056-78260075 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | - | chr7_2:78260057-78260076 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | + | chr7_2:78260078-78260097 | Msa1079210:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | + | chr7_2:78260099-78260118 | Msa1079210:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | - | chr7_2:78260300-78260319 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | - | chr7_2:78260328-78260347 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | + | chr7_2:78260326-78260345 | Msa1079210:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | - | chr7_2:78260378-78260397 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | + | chr7_2:78260558-78260577 | Msa1079210:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | + | chr7_2:78260649-78260668 | Msa1079210:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | + | chr7_2:78260650-78260669 | Msa1079210:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | - | chr7_2:78260663-78260682 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | - | chr7_2:78260692-78260711 | None:intergenic | 45.0% | |
| TCGTTGACCCATTAAGGATC+TGG | - | chr7_2:78259576-78259595 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | - | chr7_2:78259582-78259601 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | + | chr7_2:78259862-78259881 | Msa1079210:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | - | chr7_2:78259869-78259888 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | - | chr7_2:78259870-78259889 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | - | chr7_2:78259950-78259969 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | - | chr7_2:78260056-78260075 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | - | chr7_2:78260057-78260076 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | + | chr7_2:78260078-78260097 | Msa1079210:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | + | chr7_2:78260099-78260118 | Msa1079210:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | - | chr7_2:78260300-78260319 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | - | chr7_2:78260328-78260347 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | + | chr7_2:78260326-78260345 | Msa1079210:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | - | chr7_2:78260378-78260397 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | + | chr7_2:78260558-78260577 | Msa1079210:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | + | chr7_2:78260649-78260668 | Msa1079210:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | + | chr7_2:78260650-78260669 | Msa1079210:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | - | chr7_2:78260663-78260682 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | - | chr7_2:78260692-78260711 | None:intergenic | 45.0% | |
| GAAGCGAATACCCTCTGTGT+TGG | + | chr7_2:78259856-78259875 | Msa1079210:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | + | chr7_2:78260053-78260072 | Msa1079210:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | - | chr7_2:78260333-78260352 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | + | chr7_2:78260362-78260381 | Msa1079210:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | - | chr7_2:78260372-78260391 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | + | chr7_2:78260621-78260640 | Msa1079210:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | + | chr7_2:78260627-78260646 | Msa1079210:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | + | chr7_2:78260648-78260667 | Msa1079210:CDS | 50.0% |
| GAAGCGAATACCCTCTGTGT+TGG | + | chr7_2:78259856-78259875 | Msa1079210:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | + | chr7_2:78260053-78260072 | Msa1079210:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | - | chr7_2:78260333-78260352 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | + | chr7_2:78260362-78260381 | Msa1079210:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | - | chr7_2:78260372-78260391 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | + | chr7_2:78260621-78260640 | Msa1079210:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | + | chr7_2:78260627-78260646 | Msa1079210:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | + | chr7_2:78260648-78260667 | Msa1079210:CDS | 50.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | - | chr7_2:78260603-78260622 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | - | chr7_2:78260613-78260632 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | + | chr7_2:78260635-78260654 | Msa1079210:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | + | chr7_2:78260653-78260672 | Msa1079210:CDS | 55.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | - | chr7_2:78260603-78260622 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | - | chr7_2:78260613-78260632 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | + | chr7_2:78260635-78260654 | Msa1079210:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | + | chr7_2:78260653-78260672 | Msa1079210:CDS | 55.0% |
| AGCCGGTAAAGTCGCTGCTG+AGG | + | chr7_2:78260608-78260627 | Msa1079210:CDS | 60.0% | |
| AGCCGGTAAAGTCGCTGCTG+AGG | + | chr7_2:78260608-78260627 | Msa1079210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 78259550 | 78260947 | 78259550 | ID=Msa1079210;Name=Msa1079210 |
| chr7_2 | mRNA | 78259550 | 78260947 | 78259550 | ID=Msa1079210-mRNA-1;Parent=Msa1079210;Name=Msa1079210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|465 |
| chr7_2 | exon | 78259550 | 78260947 | 78259550 | ID=Msa1079210-mRNA-1:exon:19440;Parent=Msa1079210-mRNA-1 |
| chr7_2 | CDS | 78259550 | 78260947 | 78259550 | ID=Msa1079210-mRNA-1:cds;Parent=Msa1079210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
