Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168970 | XP_003625620.1 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168970 | Q2HV37 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1003740 | Msa1168970 | 0.812629 | 3.850240e-51 | -8.615850e-47 |
| Msa1003800 | Msa1168970 | 0.808597 | 2.864883e-50 | -8.615850e-47 |
| Msa1003930 | Msa1168970 | 0.808535 | 2.953140e-50 | -8.615850e-47 |
| Msa1079210 | Msa1168970 | 0.989718 | 2.437412e-179 | -8.615850e-47 |
| Msa1124090 | Msa1168970 | 0.976472 | 6.844434e-142 | -8.615850e-47 |
| Msa1168970 | Msa1169060 | 0.993101 | 1.855342e-197 | -8.615850e-47 |
| Msa0483910 | Msa1168970 | 0.809890 | 1.512923e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168970 | MtrunA17_Chr7g0264051 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Msa1168970 | MtrunA17_Chr1g0181361 | 49.587 | 484 | 201 | 15 | 2 | 463 | 4 | 466 | 4.19e-146 | 426 |
| Msa1168970 | MtrunA17_Chr7g0243581 | 26.020 | 392 | 270 | 7 | 89 | 461 | 95 | 485 | 6.90e-38 | 144 |
| Msa1168970 | MtrunA17_Chr4g0004961 | 25.952 | 420 | 263 | 10 | 84 | 461 | 94 | 507 | 9.22e-38 | 144 |
| Msa1168970 | MtrunA17_Chr3g0106481 | 24.172 | 513 | 320 | 14 | 1 | 461 | 1 | 496 | 2.66e-34 | 134 |
| Msa1168970 | MtrunA17_Chr3g0133101 | 24.432 | 352 | 200 | 13 | 126 | 464 | 89 | 387 | 1.85e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1168970 | AT3G53400.1 | 45.963 | 483 | 226 | 12 | 1 | 465 | 1 | 466 | 5.92e-134 | 395 |
| Msa1168970 | AT5G03190.1 | 43.856 | 472 | 237 | 11 | 1 | 465 | 1 | 451 | 4.14e-126 | 374 |
| Msa1168970 | AT5G03190.2 | 43.384 | 461 | 233 | 11 | 12 | 465 | 36 | 475 | 2.05e-121 | 363 |
| Msa1168970 | AT5G01710.1 | 24.777 | 448 | 283 | 10 | 62 | 463 | 74 | 513 | 1.70e-39 | 149 |
| Msa1168970 | AT1G24480.1 | 27.957 | 186 | 121 | 5 | 60 | 238 | 55 | 234 | 2.45e-12 | 67.0 |
Find 81 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATTTCCAGATCCTTAA+TGG | 0.174169 | 7_4:-61880336 | Msa1168970:CDS |
| GTCGAATCGTTGACCCATTA+AGG | 0.243046 | 7_4:+61880322 | None:intergenic |
| CGCTTTATCAAACTATGATT+TGG | 0.264575 | 7_4:-61880241 | Msa1168970:CDS |
| CATTAAGGATCTGGAAATTC+AGG | 0.297496 | 7_4:+61880337 | None:intergenic |
| GGTTGGTTTATATTGATATT+GGG | 0.306403 | 7_4:-61879474 | Msa1168970:CDS |
| AGGTTGGTTTATATTGATAT+TGG | 0.318319 | 7_4:-61879475 | Msa1168970:CDS |
| GATTCGATTCTGAAAGAAAT+AGG | 0.318467 | 7_4:+61880152 | None:intergenic |
| ATTTCTTTCAGAATCGAATC+TGG | 0.324960 | 7_4:-61880149 | Msa1168970:CDS |
| TTGAAAGCTTTCTGATCAAT+AGG | 0.326104 | 7_4:+61879400 | None:intergenic |
| GAATGTGGTCACTGAGTTAA+TGG | 0.342946 | 7_4:-61880088 | Msa1168970:CDS |
| ATCACGTTTGTTTATCATCC+TGG | 0.389501 | 7_4:-61879319 | Msa1168970:CDS |
| GTTCTTAAGCCTAATGGAAT+TGG | 0.390560 | 7_4:-61879817 | Msa1168970:CDS |
| CCCTGCTTTGCTTGTTCTTG+AGG | 0.393326 | 7_4:-61879848 | Msa1168970:CDS |
| CATTTGATTTCGTATTGTCT+AGG | 0.400138 | 7_4:-61879891 | Msa1168970:CDS |
| GATCTCAACAATGATGAAAC+TGG | 0.404198 | 7_4:+61879736 | None:intergenic |
| TTCCTTGTTTGTCAAGGCAT+TGG | 0.407341 | 7_4:+61879045 | None:intergenic |
| TTATCACCATCTTCTTTCTC+AGG | 0.407873 | 7_4:+61879070 | None:intergenic |
| AACGATATTCTTCATCTTGA+GGG | 0.413335 | 7_4:+61879939 | None:intergenic |
| TGAATTTCCAGATCCTTAAT+GGG | 0.414241 | 7_4:-61880335 | Msa1168970:CDS |
| CATCAGATCTACGAGAGGTT+TGG | 0.414748 | 7_4:+61879576 | None:intergenic |
| GAGCGTGTTCTTAAGCCTAA+TGG | 0.420052 | 7_4:-61879823 | Msa1168970:CDS |
| AGCCTCAGCAGCGACTTTAC+CGG | 0.421933 | 7_4:+61879291 | None:intergenic |
| GGAATTGGTGCACTTCTTGT+TGG | 0.423934 | 7_4:-61879802 | Msa1168970:CDS |
| TGTTGGTGAAGGTTCTTCAA+TGG | 0.432990 | 7_4:-61880028 | Msa1168970:CDS |
| ATTGTCTAGGGATCTTGATA+AGG | 0.440951 | 7_4:-61879878 | Msa1168970:CDS |
| TCGTTGACCCATTAAGGATC+TGG | 0.450738 | 7_4:+61880328 | None:intergenic |
| ATTTGATTTCGTATTGTCTA+GGG | 0.451800 | 7_4:-61879890 | Msa1168970:CDS |
| ACCTCAAGAACAAGCAAAGC+AGG | 0.456915 | 7_4:+61879847 | None:intergenic |
| AACTCTTCCTCCCCAACAAA+AGG | 0.457530 | 7_4:+61879241 | None:intergenic |
| AAGAGTTTGATTTCCTTGCC+TGG | 0.462393 | 7_4:-61879225 | Msa1168970:CDS |
| GTTAAAGCAATGAAACAGTT+GGG | 0.467346 | 7_4:-61880003 | Msa1168970:CDS |
| AACTTAGGCAAATATGAAAC+CGG | 0.474561 | 7_4:+61879520 | None:intergenic |
| TGTGTATGTGCATCAATTGT+GGG | 0.474661 | 7_4:-61878984 | Msa1168970:CDS |
| TTTCTTTCAGAATCGAATCT+GGG | 0.479609 | 7_4:-61880148 | Msa1168970:CDS |
| AAGAAGCGCAATCATTGAAA+TGG | 0.479695 | 7_4:+61880266 | None:intergenic |
| GTTTATCATCCTGGATTAGC+CGG | 0.485999 | 7_4:-61879310 | Msa1168970:CDS |
| TGAATGCAAATGTTAGTGAT+TGG | 0.490906 | 7_4:-61879438 | Msa1168970:CDS |
| CAAACCTCTCGTAGATCTGA+TGG | 0.493210 | 7_4:-61879575 | Msa1168970:CDS |
| GTTGTACTCAAGATGAATGC+AGG | 0.496244 | 7_4:-61879172 | Msa1168970:CDS |
| TATGAAACCGGCATCGGCAT+CGG | 0.497449 | 7_4:+61879532 | None:intergenic |
| ATTCTGAAAGAAATAGGAAG+TGG | 0.500053 | 7_4:+61880158 | None:intergenic |
| TTCTGATCAATAGGATATGA+AGG | 0.501367 | 7_4:+61879409 | None:intergenic |
| CAGTTTCTTTGAACCAGGCA+AGG | 0.506755 | 7_4:+61879212 | None:intergenic |
| GTTGGTTTATATTGATATTG+GGG | 0.508956 | 7_4:-61879473 | Msa1168970:CDS |
| AGAAGTGCACCAATTCCATT+AGG | 0.511486 | 7_4:+61879808 | None:intergenic |
| AAACGATATTCTTCATCTTG+AGG | 0.511737 | 7_4:+61879938 | None:intergenic |
| TAATGTCGGAGACGGAGAGC+TGG | 0.513267 | 7_4:-61879266 | Msa1168970:CDS |
| GTTTATATTGATATTGGGGT+AGG | 0.516469 | 7_4:-61879469 | Msa1168970:CDS |
| TGTTAAAGCAATGAAACAGT+TGG | 0.517899 | 7_4:-61880004 | Msa1168970:CDS |
| GCGACTTTACCGGCTAATCC+AGG | 0.522388 | 7_4:+61879301 | None:intergenic |
| TGTTTCTACTAGGAAGAGGT+TGG | 0.531207 | 7_4:-61879491 | Msa1168970:CDS |
| AGTTTGTAGATGTTTCTACT+AGG | 0.532167 | 7_4:-61879501 | Msa1168970:CDS |
| GGCAAATATGAAACCGGCAT+CGG | 0.532678 | 7_4:+61879526 | None:intergenic |
| TAGATGTTTCTACTAGGAAG+AGG | 0.535930 | 7_4:-61879495 | Msa1168970:CDS |
| TTCTGAAAGAAATAGGAAGT+GGG | 0.537629 | 7_4:+61880159 | None:intergenic |
| TTGCACAGTTTCTTTGAACC+AGG | 0.540355 | 7_4:+61879207 | None:intergenic |
| GGTTTGGTTAATGTCAAACT+AGG | 0.546298 | 7_4:+61879592 | None:intergenic |
| GTGTGTATGTGCATCAATTG+TGG | 0.551180 | 7_4:-61878985 | Msa1168970:CDS |
| AGATGTCCTGAGAAAGAAGA+TGG | 0.561930 | 7_4:-61879076 | Msa1168970:CDS |
| AATGTGGTCACTGAGTTAAT+GGG | 0.566533 | 7_4:-61880087 | Msa1168970:CDS |
| GTAGAAACATCTACAAACTT+AGG | 0.572228 | 7_4:+61879505 | None:intergenic |
| TTCTTTCAGAATCGAATCTG+GGG | 0.582119 | 7_4:-61880147 | Msa1168970:CDS |
| AATACCCTCTGTGTTGGTGA+AGG | 0.584957 | 7_4:-61880039 | Msa1168970:CDS |
| GACAAACAAGGAAAATTGCA+TGG | 0.587363 | 7_4:-61879035 | Msa1168970:CDS |
| TTGTCTTACGTGAAGAGACC+TGG | 0.587754 | 7_4:-61879343 | Msa1168970:CDS |
| CGTTAACTTGACAGTGAATG+TGG | 0.591281 | 7_4:-61880103 | Msa1168970:CDS |
| TGATAAACAAACGTGATACC+AGG | 0.592660 | 7_4:+61879325 | None:intergenic |
| TTATCTGATGTATTTGACAG+TGG | 0.598424 | 7_4:-61879130 | Msa1168970:CDS |
| GAGGCTGATAATGTCGGAGA+CGG | 0.602304 | 7_4:-61879274 | Msa1168970:CDS |
| GCTGCTGAGGCTGATAATGT+CGG | 0.602809 | 7_4:-61879280 | Msa1168970:CDS |
| GTCAAACTAGGACAATCAGC+AGG | 0.603229 | 7_4:+61879604 | None:intergenic |
| AACCAATGCCTTGACAAACA+AGG | 0.613471 | 7_4:-61879047 | Msa1168970:CDS |
| AGCCGGTAAAGTCGCTGCTG+AGG | 0.614776 | 7_4:-61879293 | Msa1168970:CDS |
| TCTGAAAGAAATAGGAAGTG+GGG | 0.627270 | 7_4:+61880160 | None:intergenic |
| CCTCAAGAACAAGCAAAGCA+GGG | 0.639198 | 7_4:+61879848 | None:intergenic |
| GAAGCGAATACCCTCTGTGT+TGG | 0.663485 | 7_4:-61880045 | Msa1168970:CDS |
| AGAACCTTCACCAACACAGA+GGG | 0.664286 | 7_4:+61880035 | None:intergenic |
| AAGAACCTTCACCAACACAG+AGG | 0.674044 | 7_4:+61880034 | None:intergenic |
| TACACAAGTCTCAGAAACAG+TGG | 0.674560 | 7_4:-61879007 | Msa1168970:CDS |
| GTGTATGTGCATCAATTGTG+GGG | 0.707496 | 7_4:-61878983 | Msa1168970:CDS |
| GGTTCCATCAGATCTACGAG+AGG | 0.709221 | 7_4:+61879571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATTTCGTATTGTCTA+GGG | - | chr7_4:61879437-61879456 | Msa1168970:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | + | chr7_4:61879659-61879678 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | - | chr7_4:61879852-61879871 | Msa1168970:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | - | chr7_4:61879853-61879872 | Msa1168970:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | - | chr7_4:61879854-61879873 | Msa1168970:CDS | 25.0% |
| !! | ATTTGATTTCGTATTGTCTA+GGG | - | chr7_4:61879437-61879456 | Msa1168970:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | + | chr7_4:61879659-61879678 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | - | chr7_4:61879852-61879871 | Msa1168970:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | - | chr7_4:61879853-61879872 | Msa1168970:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | - | chr7_4:61879854-61879873 | Msa1168970:CDS | 25.0% |
| TGAATTTCCAGATCCTTAAT+GGG | - | chr7_4:61878992-61879011 | Msa1168970:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | - | chr7_4:61879086-61879105 | Msa1168970:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | + | chr7_4:61879171-61879190 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | + | chr7_4:61879172-61879191 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | + | chr7_4:61879178-61879197 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | - | chr7_4:61879178-61879197 | Msa1168970:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | - | chr7_4:61879179-61879198 | Msa1168970:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | - | chr7_4:61879323-61879342 | Msa1168970:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | - | chr7_4:61879324-61879343 | Msa1168970:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | - | chr7_4:61879342-61879361 | Msa1168970:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | + | chr7_4:61879391-61879410 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | + | chr7_4:61879392-61879411 | None:intergenic | 30.0% | |
| ! | CATTTGATTTCGTATTGTCT+AGG | - | chr7_4:61879436-61879455 | Msa1168970:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | + | chr7_4:61879810-61879829 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | + | chr7_4:61879825-61879844 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | - | chr7_4:61879826-61879845 | Msa1168970:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | - | chr7_4:61879858-61879877 | Msa1168970:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | - | chr7_4:61879889-61879908 | Msa1168970:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | + | chr7_4:61879921-61879940 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | + | chr7_4:61879930-61879949 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | - | chr7_4:61880197-61880216 | Msa1168970:CDS | 30.0% | |
| TGAATTTCCAGATCCTTAAT+GGG | - | chr7_4:61878992-61879011 | Msa1168970:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | - | chr7_4:61879086-61879105 | Msa1168970:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | + | chr7_4:61879171-61879190 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | + | chr7_4:61879172-61879191 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | + | chr7_4:61879178-61879197 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | - | chr7_4:61879178-61879197 | Msa1168970:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | - | chr7_4:61879179-61879198 | Msa1168970:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | - | chr7_4:61879323-61879342 | Msa1168970:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | - | chr7_4:61879324-61879343 | Msa1168970:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | - | chr7_4:61879342-61879361 | Msa1168970:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | + | chr7_4:61879391-61879410 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | + | chr7_4:61879392-61879411 | None:intergenic | 30.0% | |
| ! | CATTTGATTTCGTATTGTCT+AGG | - | chr7_4:61879436-61879455 | Msa1168970:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | + | chr7_4:61879810-61879829 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | + | chr7_4:61879825-61879844 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | - | chr7_4:61879826-61879845 | Msa1168970:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | - | chr7_4:61879858-61879877 | Msa1168970:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | - | chr7_4:61879889-61879908 | Msa1168970:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | + | chr7_4:61879921-61879940 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | + | chr7_4:61879930-61879949 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | - | chr7_4:61880197-61880216 | Msa1168970:CDS | 30.0% | |
| CATTAAGGATCTGGAAATTC+AGG | + | chr7_4:61878993-61879012 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | - | chr7_4:61878991-61879010 | Msa1168970:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | + | chr7_4:61879064-61879083 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | + | chr7_4:61879170-61879189 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | - | chr7_4:61879180-61879199 | Msa1168970:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | - | chr7_4:61879240-61879259 | Msa1168970:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | + | chr7_4:61879380-61879399 | None:intergenic | 35.0% | |
| ATTGTCTAGGGATCTTGATA+AGG | - | chr7_4:61879449-61879468 | Msa1168970:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | - | chr7_4:61879510-61879529 | Msa1168970:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | + | chr7_4:61879594-61879613 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | + | chr7_4:61879738-61879757 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | - | chr7_4:61879832-61879851 | Msa1168970:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | + | chr7_4:61880005-61880024 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | - | chr7_4:61880008-61880027 | Msa1168970:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | + | chr7_4:61880260-61880279 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | + | chr7_4:61880291-61880310 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | - | chr7_4:61880292-61880311 | Msa1168970:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | - | chr7_4:61880343-61880362 | Msa1168970:CDS | 35.0% | |
| CATTAAGGATCTGGAAATTC+AGG | + | chr7_4:61878993-61879012 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | - | chr7_4:61878991-61879010 | Msa1168970:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | + | chr7_4:61879064-61879083 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | + | chr7_4:61879170-61879189 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | - | chr7_4:61879180-61879199 | Msa1168970:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | - | chr7_4:61879240-61879259 | Msa1168970:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | + | chr7_4:61879380-61879399 | None:intergenic | 35.0% | |
| ATTGTCTAGGGATCTTGATA+AGG | - | chr7_4:61879449-61879468 | Msa1168970:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | - | chr7_4:61879510-61879529 | Msa1168970:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | + | chr7_4:61879594-61879613 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | + | chr7_4:61879738-61879757 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | - | chr7_4:61879832-61879851 | Msa1168970:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | + | chr7_4:61880005-61880024 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | - | chr7_4:61880008-61880027 | Msa1168970:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | + | chr7_4:61880260-61880279 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | + | chr7_4:61880291-61880310 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | - | chr7_4:61880292-61880311 | Msa1168970:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | - | chr7_4:61880343-61880362 | Msa1168970:CDS | 35.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | - | chr7_4:61879224-61879243 | Msa1168970:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | - | chr7_4:61879239-61879258 | Msa1168970:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | - | chr7_4:61879299-61879318 | Msa1168970:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | + | chr7_4:61879522-61879541 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | + | chr7_4:61879780-61879799 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | - | chr7_4:61879836-61879855 | Msa1168970:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | - | chr7_4:61880017-61880036 | Msa1168970:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | - | chr7_4:61880102-61880121 | Msa1168970:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | + | chr7_4:61880123-61880142 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | - | chr7_4:61880155-61880174 | Msa1168970:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | - | chr7_4:61880251-61880270 | Msa1168970:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | - | chr7_4:61880280-61880299 | Msa1168970:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | + | chr7_4:61880285-61880304 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | - | chr7_4:61880320-61880339 | Msa1168970:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | - | chr7_4:61880342-61880361 | Msa1168970:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | - | chr7_4:61880344-61880363 | Msa1168970:CDS | 40.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | - | chr7_4:61879224-61879243 | Msa1168970:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | - | chr7_4:61879239-61879258 | Msa1168970:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | - | chr7_4:61879299-61879318 | Msa1168970:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | + | chr7_4:61879522-61879541 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | + | chr7_4:61879780-61879799 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | - | chr7_4:61879836-61879855 | Msa1168970:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | - | chr7_4:61880017-61880036 | Msa1168970:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | - | chr7_4:61880102-61880121 | Msa1168970:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | + | chr7_4:61880123-61880142 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | - | chr7_4:61880155-61880174 | Msa1168970:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | - | chr7_4:61880251-61880270 | Msa1168970:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | - | chr7_4:61880280-61880299 | Msa1168970:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | + | chr7_4:61880285-61880304 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | - | chr7_4:61880320-61880339 | Msa1168970:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | - | chr7_4:61880342-61880361 | Msa1168970:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | - | chr7_4:61880344-61880363 | Msa1168970:CDS | 40.0% | |
| TCGTTGACCCATTAAGGATC+TGG | + | chr7_4:61879002-61879021 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | + | chr7_4:61879008-61879027 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | - | chr7_4:61879288-61879307 | Msa1168970:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | + | chr7_4:61879295-61879314 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | + | chr7_4:61879296-61879315 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | + | chr7_4:61879376-61879395 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | + | chr7_4:61879482-61879501 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | + | chr7_4:61879483-61879502 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | - | chr7_4:61879504-61879523 | Msa1168970:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | - | chr7_4:61879525-61879544 | Msa1168970:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | + | chr7_4:61879726-61879745 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | + | chr7_4:61879754-61879773 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | - | chr7_4:61879752-61879771 | Msa1168970:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | + | chr7_4:61879804-61879823 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | - | chr7_4:61879984-61880003 | Msa1168970:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | - | chr7_4:61880075-61880094 | Msa1168970:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | - | chr7_4:61880076-61880095 | Msa1168970:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | + | chr7_4:61880089-61880108 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | + | chr7_4:61880118-61880137 | None:intergenic | 45.0% | |
| TCGTTGACCCATTAAGGATC+TGG | + | chr7_4:61879002-61879021 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | + | chr7_4:61879008-61879027 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | - | chr7_4:61879288-61879307 | Msa1168970:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | + | chr7_4:61879295-61879314 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | + | chr7_4:61879296-61879315 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | + | chr7_4:61879376-61879395 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | + | chr7_4:61879482-61879501 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | + | chr7_4:61879483-61879502 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | - | chr7_4:61879504-61879523 | Msa1168970:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | - | chr7_4:61879525-61879544 | Msa1168970:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | + | chr7_4:61879726-61879745 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | + | chr7_4:61879754-61879773 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | - | chr7_4:61879752-61879771 | Msa1168970:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | + | chr7_4:61879804-61879823 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | - | chr7_4:61879984-61880003 | Msa1168970:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | - | chr7_4:61880075-61880094 | Msa1168970:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | - | chr7_4:61880076-61880095 | Msa1168970:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | + | chr7_4:61880089-61880108 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | + | chr7_4:61880118-61880137 | None:intergenic | 45.0% | |
| GAAGCGAATACCCTCTGTGT+TGG | - | chr7_4:61879282-61879301 | Msa1168970:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | - | chr7_4:61879479-61879498 | Msa1168970:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | + | chr7_4:61879759-61879778 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | - | chr7_4:61879788-61879807 | Msa1168970:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | + | chr7_4:61879798-61879817 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | - | chr7_4:61880047-61880066 | Msa1168970:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | - | chr7_4:61880053-61880072 | Msa1168970:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | - | chr7_4:61880074-61880093 | Msa1168970:CDS | 50.0% |
| GAAGCGAATACCCTCTGTGT+TGG | - | chr7_4:61879282-61879301 | Msa1168970:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | - | chr7_4:61879479-61879498 | Msa1168970:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | + | chr7_4:61879759-61879778 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | - | chr7_4:61879788-61879807 | Msa1168970:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | + | chr7_4:61879798-61879817 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | - | chr7_4:61880047-61880066 | Msa1168970:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | - | chr7_4:61880053-61880072 | Msa1168970:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | - | chr7_4:61880074-61880093 | Msa1168970:CDS | 50.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | + | chr7_4:61880029-61880048 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | + | chr7_4:61880039-61880058 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | - | chr7_4:61880061-61880080 | Msa1168970:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | - | chr7_4:61880079-61880098 | Msa1168970:CDS | 55.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | + | chr7_4:61880029-61880048 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | + | chr7_4:61880039-61880058 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | - | chr7_4:61880061-61880080 | Msa1168970:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | - | chr7_4:61880079-61880098 | Msa1168970:CDS | 55.0% |
| AGCCGGTAAAGTCGCTGCTG+AGG | - | chr7_4:61880034-61880053 | Msa1168970:CDS | 60.0% | |
| AGCCGGTAAAGTCGCTGCTG+AGG | - | chr7_4:61880034-61880053 | Msa1168970:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 61878976 | 61880373 | 61878976 | ID=Msa1168970;Name=Msa1168970 |
| chr7_4 | mRNA | 61878976 | 61880373 | 61878976 | ID=Msa1168970-mRNA-1;Parent=Msa1168970;Name=Msa1168970-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|465 |
| chr7_4 | exon | 61878976 | 61880373 | 61878976 | ID=Msa1168970-mRNA-1:exon:19520;Parent=Msa1168970-mRNA-1 |
| chr7_4 | CDS | 61878976 | 61880373 | 61878976 | ID=Msa1168970-mRNA-1:cds;Parent=Msa1168970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
