Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124090 | XP_003625620.1 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124090 | Q2HV37 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0700460 | Msa1124090 | 0.831138 | 1.978842e-55 | -8.615850e-47 |
| Msa1003740 | Msa1124090 | 0.827798 | 1.281943e-54 | -8.615850e-47 |
| Msa1003800 | Msa1124090 | 0.833652 | 4.715309e-56 | -8.615850e-47 |
| Msa1003930 | Msa1124090 | 0.827980 | 1.159438e-54 | -8.615850e-47 |
| Msa1079210 | Msa1124090 | 0.974949 | 4.576184e-139 | -8.615850e-47 |
| Msa1124090 | Msa1168970 | 0.976472 | 6.844434e-142 | -8.615850e-47 |
| Msa1124090 | Msa1169060 | 0.982981 | 1.638060e-156 | -8.615850e-47 |
| Msa1124090 | Msa1186520 | 0.804856 | 1.767100e-49 | -8.615850e-47 |
| Msa1124090 | Msa1240770 | 0.819021 | 1.445177e-52 | -8.615850e-47 |
| Msa1124090 | Msa1393780 | 0.808828 | 2.556127e-50 | -8.615850e-47 |
| Msa0483910 | Msa1124090 | 0.834710 | 2.560524e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124090 | MtrunA17_Chr7g0264051 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Msa1124090 | MtrunA17_Chr1g0181361 | 49.587 | 484 | 201 | 15 | 2 | 463 | 4 | 466 | 4.19e-146 | 426 |
| Msa1124090 | MtrunA17_Chr7g0243581 | 26.020 | 392 | 270 | 7 | 89 | 461 | 95 | 485 | 6.90e-38 | 144 |
| Msa1124090 | MtrunA17_Chr4g0004961 | 25.952 | 420 | 263 | 10 | 84 | 461 | 94 | 507 | 9.22e-38 | 144 |
| Msa1124090 | MtrunA17_Chr3g0106481 | 24.172 | 513 | 320 | 14 | 1 | 461 | 1 | 496 | 2.66e-34 | 134 |
| Msa1124090 | MtrunA17_Chr3g0133101 | 24.432 | 352 | 200 | 13 | 126 | 464 | 89 | 387 | 1.85e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1124090 | AT3G53400.1 | 45.963 | 483 | 226 | 12 | 1 | 465 | 1 | 466 | 5.92e-134 | 395 |
| Msa1124090 | AT5G03190.1 | 43.856 | 472 | 237 | 11 | 1 | 465 | 1 | 451 | 4.14e-126 | 374 |
| Msa1124090 | AT5G03190.2 | 43.384 | 461 | 233 | 11 | 12 | 465 | 36 | 475 | 2.05e-121 | 363 |
| Msa1124090 | AT5G01710.1 | 24.777 | 448 | 283 | 10 | 62 | 463 | 74 | 513 | 1.70e-39 | 149 |
| Msa1124090 | AT1G24480.1 | 27.957 | 186 | 121 | 5 | 60 | 238 | 55 | 234 | 2.45e-12 | 67.0 |
Find 81 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATTTCCAGATCCTTAA+TGG | 0.174169 | 7_3:+75141727 | Msa1124090:CDS |
| GTCGAATCGTTGACCCATTA+AGG | 0.243046 | 7_3:-75141741 | None:intergenic |
| CGCTTTATCAAACTATGATT+TGG | 0.264575 | 7_3:+75141822 | Msa1124090:CDS |
| CATTAAGGATCTGGAAATTC+AGG | 0.297496 | 7_3:-75141726 | None:intergenic |
| GGTTGGTTTATATTGATATT+GGG | 0.306403 | 7_3:+75142589 | Msa1124090:CDS |
| AGGTTGGTTTATATTGATAT+TGG | 0.318319 | 7_3:+75142588 | Msa1124090:CDS |
| GATTCGATTCTGAAAGAAAT+AGG | 0.318467 | 7_3:-75141911 | None:intergenic |
| ATTTCTTTCAGAATCGAATC+TGG | 0.324960 | 7_3:+75141914 | Msa1124090:CDS |
| TTGAAAGCTTTCTGATCAAT+AGG | 0.326104 | 7_3:-75142663 | None:intergenic |
| GAATGTGGTCACTGAGTTAA+TGG | 0.342946 | 7_3:+75141975 | Msa1124090:CDS |
| CGTTTGATTTCGTATTGTCT+AGG | 0.377783 | 7_3:+75142172 | Msa1124090:CDS |
| ATCACGTTTGTTTATCATCC+TGG | 0.389501 | 7_3:+75142744 | Msa1124090:CDS |
| GTTCTTAAGCCTAATGGAAT+TGG | 0.390560 | 7_3:+75142246 | Msa1124090:CDS |
| CCCTGCTTTGCTTGTTCTTG+AGG | 0.393326 | 7_3:+75142215 | Msa1124090:CDS |
| GATCTCAACAATGATGAAAC+TGG | 0.404198 | 7_3:-75142327 | None:intergenic |
| TTCCTTGTTTGTCAAGGCAT+TGG | 0.407341 | 7_3:-75143018 | None:intergenic |
| TTATCACCATCTTCTTTCTC+AGG | 0.407873 | 7_3:-75142993 | None:intergenic |
| AACGATATTCTTCATCTTGA+GGG | 0.413335 | 7_3:-75142124 | None:intergenic |
| TGAATTTCCAGATCCTTAAT+GGG | 0.414241 | 7_3:+75141728 | Msa1124090:CDS |
| CATCAGATCTACGAGAGGTT+TGG | 0.414748 | 7_3:-75142487 | None:intergenic |
| GAGCGTGTTCTTAAGCCTAA+TGG | 0.420052 | 7_3:+75142240 | Msa1124090:CDS |
| AGCCTCAGCAGCGACTTTAC+CGG | 0.421933 | 7_3:-75142772 | None:intergenic |
| GGAATTGGTGCACTTCTTGT+TGG | 0.423934 | 7_3:+75142261 | Msa1124090:CDS |
| TGTTGGTGAAGGTTCTTCAA+TGG | 0.432990 | 7_3:+75142035 | Msa1124090:CDS |
| ATTGTCTAGGGATCTTGATA+AGG | 0.440951 | 7_3:+75142185 | Msa1124090:CDS |
| TCGTTGACCCATTAAGGATC+TGG | 0.450738 | 7_3:-75141735 | None:intergenic |
| ACCTCAAGAACAAGCAAAGC+AGG | 0.456915 | 7_3:-75142216 | None:intergenic |
| AACTCTTCCTCCCCAACAAA+AGG | 0.457530 | 7_3:-75142822 | None:intergenic |
| GTTTGATTTCGTATTGTCTA+GGG | 0.459816 | 7_3:+75142173 | Msa1124090:CDS |
| AAGAGTTTGATTTCCTTGCC+TGG | 0.462393 | 7_3:+75142838 | Msa1124090:CDS |
| GTTAAAGCAATGAAACAGTT+GGG | 0.467346 | 7_3:+75142060 | Msa1124090:CDS |
| AACTTAGGCAAATATGAAAC+CGG | 0.474561 | 7_3:-75142543 | None:intergenic |
| TGTGTATGTGCATCAATTGT+GGG | 0.474661 | 7_3:+75143079 | Msa1124090:CDS |
| TTTCTTTCAGAATCGAATCT+GGG | 0.479609 | 7_3:+75141915 | Msa1124090:CDS |
| AAGAAGCGCAATCATTGAAA+TGG | 0.479695 | 7_3:-75141797 | None:intergenic |
| GTTTATCATCCTGGATTAGC+CGG | 0.485999 | 7_3:+75142753 | Msa1124090:CDS |
| TGAATGCAAATGTTAGTGAT+TGG | 0.490906 | 7_3:+75142625 | Msa1124090:CDS |
| CAAACCTCTCGTAGATCTGA+TGG | 0.493210 | 7_3:+75142488 | Msa1124090:CDS |
| GTTGTACTCAAGATGAATGC+AGG | 0.496244 | 7_3:+75142891 | Msa1124090:CDS |
| TATGAAACCGGCATCGGCAT+CGG | 0.497449 | 7_3:-75142531 | None:intergenic |
| ATTCTGAAAGAAATAGGAAG+TGG | 0.500053 | 7_3:-75141905 | None:intergenic |
| TTCTGATCAATAGGATATGA+AGG | 0.501367 | 7_3:-75142654 | None:intergenic |
| CAGTTTCTTTGAACCAGGCA+AGG | 0.506755 | 7_3:-75142851 | None:intergenic |
| GTTGGTTTATATTGATATTG+GGG | 0.508956 | 7_3:+75142590 | Msa1124090:CDS |
| AGAAGTGCACCAATTCCATT+AGG | 0.511486 | 7_3:-75142255 | None:intergenic |
| AAACGATATTCTTCATCTTG+AGG | 0.511737 | 7_3:-75142125 | None:intergenic |
| TAATGTCGGAGACGGAGAGC+TGG | 0.513267 | 7_3:+75142797 | Msa1124090:CDS |
| GTTTATATTGATATTGGGGT+AGG | 0.516469 | 7_3:+75142594 | Msa1124090:CDS |
| TGTTAAAGCAATGAAACAGT+TGG | 0.517899 | 7_3:+75142059 | Msa1124090:CDS |
| GCGACTTTACCGGCTAATCC+AGG | 0.522388 | 7_3:-75142762 | None:intergenic |
| TGTTTCTACTAGGAAGAGGT+TGG | 0.531207 | 7_3:+75142572 | Msa1124090:CDS |
| AGTTTGTAGATGTTTCTACT+AGG | 0.532167 | 7_3:+75142562 | Msa1124090:CDS |
| GGCAAATATGAAACCGGCAT+CGG | 0.532678 | 7_3:-75142537 | None:intergenic |
| TAGATGTTTCTACTAGGAAG+AGG | 0.535930 | 7_3:+75142568 | Msa1124090:CDS |
| TTCTGAAAGAAATAGGAAGT+GGG | 0.537629 | 7_3:-75141904 | None:intergenic |
| TTGCACAGTTTCTTTGAACC+AGG | 0.540355 | 7_3:-75142856 | None:intergenic |
| GGTTTGGTTAATGTCAAACT+AGG | 0.546298 | 7_3:-75142471 | None:intergenic |
| GTGTGTATGTGCATCAATTG+TGG | 0.551180 | 7_3:+75143078 | Msa1124090:CDS |
| AGATGTCCTGAGAAAGAAGA+TGG | 0.561930 | 7_3:+75142987 | Msa1124090:CDS |
| AATGTGGTCACTGAGTTAAT+GGG | 0.566533 | 7_3:+75141976 | Msa1124090:CDS |
| GTAGAAACATCTACAAACTT+AGG | 0.572228 | 7_3:-75142558 | None:intergenic |
| TTCTTTCAGAATCGAATCTG+GGG | 0.582119 | 7_3:+75141916 | Msa1124090:CDS |
| AATACCCTCTGTGTTGGTGA+AGG | 0.584957 | 7_3:+75142024 | Msa1124090:CDS |
| GACAAACAAGGAAAATTGCA+TGG | 0.587363 | 7_3:+75143028 | Msa1124090:CDS |
| TTGTCTTACGTGAAGAGACC+TGG | 0.587754 | 7_3:+75142720 | Msa1124090:CDS |
| CGTTAACTTGACAGTGAATG+TGG | 0.591281 | 7_3:+75141960 | Msa1124090:CDS |
| TGATAAACAAACGTGATACC+AGG | 0.592660 | 7_3:-75142738 | None:intergenic |
| TTATCTGATGTATTTGACAG+TGG | 0.598424 | 7_3:+75142933 | Msa1124090:CDS |
| GAGGCTGATAATGTCGGAGA+CGG | 0.602304 | 7_3:+75142789 | Msa1124090:CDS |
| GCTGCTGAGGCTGATAATGT+CGG | 0.602809 | 7_3:+75142783 | Msa1124090:CDS |
| GTCAAACTAGGACAATCAGC+AGG | 0.603229 | 7_3:-75142459 | None:intergenic |
| AACCAATGCCTTGACAAACA+AGG | 0.613471 | 7_3:+75143016 | Msa1124090:CDS |
| AGCCGGTAAAGTCGCTGCTG+AGG | 0.614776 | 7_3:+75142770 | Msa1124090:CDS |
| TCTGAAAGAAATAGGAAGTG+GGG | 0.627270 | 7_3:-75141903 | None:intergenic |
| CCTCAAGAACAAGCAAAGCA+GGG | 0.639198 | 7_3:-75142215 | None:intergenic |
| GAAGCGAATACCCTCTGTGT+TGG | 0.663485 | 7_3:+75142018 | Msa1124090:CDS |
| AGAACCTTCACCAACACAGA+GGG | 0.664286 | 7_3:-75142028 | None:intergenic |
| AAGAACCTTCACCAACACAG+AGG | 0.674044 | 7_3:-75142029 | None:intergenic |
| TACACAAGTCTCAGAAACAG+TGG | 0.674560 | 7_3:+75143056 | Msa1124090:CDS |
| GTGTATGTGCATCAATTGTG+GGG | 0.707496 | 7_3:+75143080 | Msa1124090:CDS |
| GGTTCCATCAGATCTACGAG+AGG | 0.709221 | 7_3:-75142492 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTTCTTGAAAACAACA+AGG | - | chr7_3:75142395-75142414 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | + | chr7_3:75142588-75142607 | Msa1124090:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | + | chr7_3:75142589-75142608 | Msa1124090:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | + | chr7_3:75142590-75142609 | Msa1124090:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | - | chr7_3:75142395-75142414 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | + | chr7_3:75142588-75142607 | Msa1124090:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | + | chr7_3:75142589-75142608 | Msa1124090:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | + | chr7_3:75142590-75142609 | Msa1124090:CDS | 25.0% |
| TGAATTTCCAGATCCTTAAT+GGG | + | chr7_3:75141728-75141747 | Msa1124090:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | + | chr7_3:75141822-75141841 | Msa1124090:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | - | chr7_3:75141907-75141926 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | - | chr7_3:75141908-75141927 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | - | chr7_3:75141914-75141933 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | + | chr7_3:75141914-75141933 | Msa1124090:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | + | chr7_3:75141915-75141934 | Msa1124090:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | + | chr7_3:75142059-75142078 | Msa1124090:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | + | chr7_3:75142060-75142079 | Msa1124090:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | + | chr7_3:75142078-75142097 | Msa1124090:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | - | chr7_3:75142127-75142146 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | - | chr7_3:75142128-75142147 | None:intergenic | 30.0% | |
| ! | GTTTGATTTCGTATTGTCTA+GGG | + | chr7_3:75142173-75142192 | Msa1124090:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | - | chr7_3:75142546-75142565 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | - | chr7_3:75142561-75142580 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | + | chr7_3:75142562-75142581 | Msa1124090:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | + | chr7_3:75142594-75142613 | Msa1124090:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | + | chr7_3:75142625-75142644 | Msa1124090:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | - | chr7_3:75142657-75142676 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | - | chr7_3:75142666-75142685 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | + | chr7_3:75142933-75142952 | Msa1124090:CDS | 30.0% | |
| TGAATTTCCAGATCCTTAAT+GGG | + | chr7_3:75141728-75141747 | Msa1124090:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | + | chr7_3:75141822-75141841 | Msa1124090:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | - | chr7_3:75141907-75141926 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | - | chr7_3:75141908-75141927 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | - | chr7_3:75141914-75141933 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | + | chr7_3:75141914-75141933 | Msa1124090:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | + | chr7_3:75141915-75141934 | Msa1124090:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | + | chr7_3:75142059-75142078 | Msa1124090:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | + | chr7_3:75142060-75142079 | Msa1124090:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | + | chr7_3:75142078-75142097 | Msa1124090:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | - | chr7_3:75142127-75142146 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | - | chr7_3:75142128-75142147 | None:intergenic | 30.0% | |
| ! | GTTTGATTTCGTATTGTCTA+GGG | + | chr7_3:75142173-75142192 | Msa1124090:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | - | chr7_3:75142546-75142565 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | - | chr7_3:75142561-75142580 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | + | chr7_3:75142562-75142581 | Msa1124090:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | + | chr7_3:75142594-75142613 | Msa1124090:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | + | chr7_3:75142625-75142644 | Msa1124090:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | - | chr7_3:75142657-75142676 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | - | chr7_3:75142666-75142685 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | + | chr7_3:75142933-75142952 | Msa1124090:CDS | 30.0% | |
| CATTAAGGATCTGGAAATTC+AGG | - | chr7_3:75141729-75141748 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | + | chr7_3:75141727-75141746 | Msa1124090:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | - | chr7_3:75141800-75141819 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | - | chr7_3:75141906-75141925 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | + | chr7_3:75141916-75141935 | Msa1124090:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | + | chr7_3:75141976-75141995 | Msa1124090:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | - | chr7_3:75142116-75142135 | None:intergenic | 35.0% | |
| ! | CGTTTGATTTCGTATTGTCT+AGG | + | chr7_3:75142172-75142191 | Msa1124090:CDS | 35.0% |
| ATTGTCTAGGGATCTTGATA+AGG | + | chr7_3:75142185-75142204 | Msa1124090:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | + | chr7_3:75142246-75142265 | Msa1124090:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | - | chr7_3:75142330-75142349 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | - | chr7_3:75142474-75142493 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | + | chr7_3:75142568-75142587 | Msa1124090:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | - | chr7_3:75142741-75142760 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | + | chr7_3:75142744-75142763 | Msa1124090:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | - | chr7_3:75142996-75143015 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | - | chr7_3:75143027-75143046 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | + | chr7_3:75143028-75143047 | Msa1124090:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | + | chr7_3:75143079-75143098 | Msa1124090:CDS | 35.0% | |
| CATTAAGGATCTGGAAATTC+AGG | - | chr7_3:75141729-75141748 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | + | chr7_3:75141727-75141746 | Msa1124090:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | - | chr7_3:75141800-75141819 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | - | chr7_3:75141906-75141925 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | + | chr7_3:75141916-75141935 | Msa1124090:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | + | chr7_3:75141976-75141995 | Msa1124090:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | - | chr7_3:75142116-75142135 | None:intergenic | 35.0% | |
| ! | CGTTTGATTTCGTATTGTCT+AGG | + | chr7_3:75142172-75142191 | Msa1124090:CDS | 35.0% |
| ATTGTCTAGGGATCTTGATA+AGG | + | chr7_3:75142185-75142204 | Msa1124090:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | + | chr7_3:75142246-75142265 | Msa1124090:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | - | chr7_3:75142330-75142349 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | - | chr7_3:75142474-75142493 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | + | chr7_3:75142568-75142587 | Msa1124090:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | - | chr7_3:75142741-75142760 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | + | chr7_3:75142744-75142763 | Msa1124090:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | - | chr7_3:75142996-75143015 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | - | chr7_3:75143027-75143046 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | + | chr7_3:75143028-75143047 | Msa1124090:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | + | chr7_3:75143079-75143098 | Msa1124090:CDS | 35.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | + | chr7_3:75141960-75141979 | Msa1124090:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | + | chr7_3:75141975-75141994 | Msa1124090:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | + | chr7_3:75142035-75142054 | Msa1124090:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | - | chr7_3:75142258-75142277 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | - | chr7_3:75142516-75142535 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | + | chr7_3:75142572-75142591 | Msa1124090:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | + | chr7_3:75142753-75142772 | Msa1124090:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | + | chr7_3:75142838-75142857 | Msa1124090:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | - | chr7_3:75142859-75142878 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | + | chr7_3:75142891-75142910 | Msa1124090:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | + | chr7_3:75142987-75143006 | Msa1124090:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | + | chr7_3:75143016-75143035 | Msa1124090:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | - | chr7_3:75143021-75143040 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | + | chr7_3:75143056-75143075 | Msa1124090:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | + | chr7_3:75143078-75143097 | Msa1124090:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | + | chr7_3:75143080-75143099 | Msa1124090:CDS | 40.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | + | chr7_3:75141960-75141979 | Msa1124090:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | + | chr7_3:75141975-75141994 | Msa1124090:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | + | chr7_3:75142035-75142054 | Msa1124090:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | - | chr7_3:75142258-75142277 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | - | chr7_3:75142516-75142535 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | + | chr7_3:75142572-75142591 | Msa1124090:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | + | chr7_3:75142753-75142772 | Msa1124090:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | + | chr7_3:75142838-75142857 | Msa1124090:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | - | chr7_3:75142859-75142878 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | + | chr7_3:75142891-75142910 | Msa1124090:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | + | chr7_3:75142987-75143006 | Msa1124090:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | + | chr7_3:75143016-75143035 | Msa1124090:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | - | chr7_3:75143021-75143040 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | + | chr7_3:75143056-75143075 | Msa1124090:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | + | chr7_3:75143078-75143097 | Msa1124090:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | + | chr7_3:75143080-75143099 | Msa1124090:CDS | 40.0% | |
| TCGTTGACCCATTAAGGATC+TGG | - | chr7_3:75141738-75141757 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | - | chr7_3:75141744-75141763 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | + | chr7_3:75142024-75142043 | Msa1124090:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | - | chr7_3:75142031-75142050 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | - | chr7_3:75142032-75142051 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | - | chr7_3:75142112-75142131 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | - | chr7_3:75142218-75142237 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | - | chr7_3:75142219-75142238 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | + | chr7_3:75142240-75142259 | Msa1124090:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | + | chr7_3:75142261-75142280 | Msa1124090:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | - | chr7_3:75142462-75142481 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | - | chr7_3:75142490-75142509 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | + | chr7_3:75142488-75142507 | Msa1124090:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | - | chr7_3:75142540-75142559 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | + | chr7_3:75142720-75142739 | Msa1124090:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | + | chr7_3:75142811-75142830 | Msa1124090:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | + | chr7_3:75142812-75142831 | Msa1124090:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | - | chr7_3:75142825-75142844 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | - | chr7_3:75142854-75142873 | None:intergenic | 45.0% | |
| TCGTTGACCCATTAAGGATC+TGG | - | chr7_3:75141738-75141757 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | - | chr7_3:75141744-75141763 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | + | chr7_3:75142024-75142043 | Msa1124090:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | - | chr7_3:75142031-75142050 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | - | chr7_3:75142032-75142051 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | - | chr7_3:75142112-75142131 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | - | chr7_3:75142218-75142237 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | - | chr7_3:75142219-75142238 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | + | chr7_3:75142240-75142259 | Msa1124090:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | + | chr7_3:75142261-75142280 | Msa1124090:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | - | chr7_3:75142462-75142481 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | - | chr7_3:75142490-75142509 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | + | chr7_3:75142488-75142507 | Msa1124090:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | - | chr7_3:75142540-75142559 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | + | chr7_3:75142720-75142739 | Msa1124090:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | + | chr7_3:75142811-75142830 | Msa1124090:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | + | chr7_3:75142812-75142831 | Msa1124090:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | - | chr7_3:75142825-75142844 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | - | chr7_3:75142854-75142873 | None:intergenic | 45.0% | |
| GAAGCGAATACCCTCTGTGT+TGG | + | chr7_3:75142018-75142037 | Msa1124090:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | + | chr7_3:75142215-75142234 | Msa1124090:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | - | chr7_3:75142495-75142514 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | + | chr7_3:75142524-75142543 | Msa1124090:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | - | chr7_3:75142534-75142553 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | + | chr7_3:75142783-75142802 | Msa1124090:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | + | chr7_3:75142789-75142808 | Msa1124090:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | + | chr7_3:75142810-75142829 | Msa1124090:CDS | 50.0% |
| GAAGCGAATACCCTCTGTGT+TGG | + | chr7_3:75142018-75142037 | Msa1124090:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | + | chr7_3:75142215-75142234 | Msa1124090:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | - | chr7_3:75142495-75142514 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | + | chr7_3:75142524-75142543 | Msa1124090:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | - | chr7_3:75142534-75142553 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | + | chr7_3:75142783-75142802 | Msa1124090:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | + | chr7_3:75142789-75142808 | Msa1124090:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | + | chr7_3:75142810-75142829 | Msa1124090:CDS | 50.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | - | chr7_3:75142765-75142784 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | - | chr7_3:75142775-75142794 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | + | chr7_3:75142797-75142816 | Msa1124090:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | + | chr7_3:75142815-75142834 | Msa1124090:CDS | 55.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | - | chr7_3:75142765-75142784 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | - | chr7_3:75142775-75142794 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | + | chr7_3:75142797-75142816 | Msa1124090:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | + | chr7_3:75142815-75142834 | Msa1124090:CDS | 55.0% |
| AGCCGGTAAAGTCGCTGCTG+AGG | + | chr7_3:75142770-75142789 | Msa1124090:CDS | 60.0% | |
| AGCCGGTAAAGTCGCTGCTG+AGG | + | chr7_3:75142770-75142789 | Msa1124090:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 75141712 | 75143109 | 75141712 | ID=Msa1124090;Name=Msa1124090 |
| chr7_3 | mRNA | 75141712 | 75143109 | 75141712 | ID=Msa1124090-mRNA-1;Parent=Msa1124090;Name=Msa1124090-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|465 |
| chr7_3 | exon | 75141712 | 75143109 | 75141712 | ID=Msa1124090-mRNA-1:exon:20158;Parent=Msa1124090-mRNA-1 |
| chr7_3 | CDS | 75141712 | 75143109 | 75141712 | ID=Msa1124090-mRNA-1:cds;Parent=Msa1124090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
