Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169060 | XP_003625620.1 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169060 | Q2HV37 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1003740 | Msa1169060 | 0.815224 | 1.031592e-51 | -8.615850e-47 |
| Msa1003800 | Msa1169060 | 0.812836 | 3.469591e-51 | -8.615850e-47 |
| Msa1003930 | Msa1169060 | 0.812579 | 3.949171e-51 | -8.615850e-47 |
| Msa1079210 | Msa1169060 | 0.988050 | 1.595687e-172 | -8.615850e-47 |
| Msa1124090 | Msa1169060 | 0.982981 | 1.638060e-156 | -8.615850e-47 |
| Msa1168970 | Msa1169060 | 0.993101 | 1.855342e-197 | -8.615850e-47 |
| Msa0483910 | Msa1169060 | 0.814850 | 1.248899e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169060 | MtrunA17_Chr7g0264051 | 95.940 | 468 | 16 | 1 | 1 | 465 | 1 | 468 | 0.0 | 919 |
| Msa1169060 | MtrunA17_Chr1g0181361 | 49.587 | 484 | 201 | 15 | 2 | 463 | 4 | 466 | 4.19e-146 | 426 |
| Msa1169060 | MtrunA17_Chr7g0243581 | 26.020 | 392 | 270 | 7 | 89 | 461 | 95 | 485 | 6.90e-38 | 144 |
| Msa1169060 | MtrunA17_Chr4g0004961 | 25.952 | 420 | 263 | 10 | 84 | 461 | 94 | 507 | 9.22e-38 | 144 |
| Msa1169060 | MtrunA17_Chr3g0106481 | 24.172 | 513 | 320 | 14 | 1 | 461 | 1 | 496 | 2.66e-34 | 134 |
| Msa1169060 | MtrunA17_Chr3g0133101 | 24.432 | 352 | 200 | 13 | 126 | 464 | 89 | 387 | 1.85e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1169060 | AT3G53400.1 | 45.963 | 483 | 226 | 12 | 1 | 465 | 1 | 466 | 5.92e-134 | 395 |
| Msa1169060 | AT5G03190.1 | 43.856 | 472 | 237 | 11 | 1 | 465 | 1 | 451 | 4.14e-126 | 374 |
| Msa1169060 | AT5G03190.2 | 43.384 | 461 | 233 | 11 | 12 | 465 | 36 | 475 | 2.05e-121 | 363 |
| Msa1169060 | AT5G01710.1 | 24.777 | 448 | 283 | 10 | 62 | 463 | 74 | 513 | 1.70e-39 | 149 |
| Msa1169060 | AT1G24480.1 | 27.957 | 186 | 121 | 5 | 60 | 238 | 55 | 234 | 2.45e-12 | 67.0 |
Find 81 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAATTTCCAGATCCTTAA+TGG | 0.174169 | 7_4:-61999108 | Msa1169060:CDS |
| GTCGAATCGTTGACCCATTA+AGG | 0.243046 | 7_4:+61999094 | None:intergenic |
| CGCTTTATCAAACTATGATT+TGG | 0.264575 | 7_4:-61999013 | Msa1169060:CDS |
| CATTAAGGATCTGGAAATTC+AGG | 0.297496 | 7_4:+61999109 | None:intergenic |
| GGTTGGTTTATATTGATATT+GGG | 0.306403 | 7_4:-61998246 | Msa1169060:CDS |
| AGGTTGGTTTATATTGATAT+TGG | 0.318319 | 7_4:-61998247 | Msa1169060:CDS |
| GATTCGATTCTGAAAGAAAT+AGG | 0.318467 | 7_4:+61998924 | None:intergenic |
| ATTTCTTTCAGAATCGAATC+TGG | 0.324960 | 7_4:-61998921 | Msa1169060:CDS |
| TTGAAAGCTTTCTGATCAAT+AGG | 0.326104 | 7_4:+61998172 | None:intergenic |
| GAATGTGGTCACTGAGTTAA+TGG | 0.342946 | 7_4:-61998860 | Msa1169060:CDS |
| ATCACGTTTGTTTATCATCC+TGG | 0.389501 | 7_4:-61998091 | Msa1169060:CDS |
| GTTCTTAAGCCTAATGGAAT+TGG | 0.390560 | 7_4:-61998589 | Msa1169060:CDS |
| CCCTGCTTTGCTTGTTCTTG+AGG | 0.393326 | 7_4:-61998620 | Msa1169060:CDS |
| CATTTGATTTCGTATTGTCT+AGG | 0.400138 | 7_4:-61998663 | Msa1169060:CDS |
| GATCTCAACAATGATGAAAC+TGG | 0.404198 | 7_4:+61998508 | None:intergenic |
| TTCCTTGTTTGTCAAGGCAT+TGG | 0.407341 | 7_4:+61997817 | None:intergenic |
| TTATCACCATCTTCTTTCTC+AGG | 0.407873 | 7_4:+61997842 | None:intergenic |
| AACGATATTCTTCATCTTGA+GGG | 0.413335 | 7_4:+61998711 | None:intergenic |
| TGAATTTCCAGATCCTTAAT+GGG | 0.414241 | 7_4:-61999107 | Msa1169060:CDS |
| CATCAGATCTACGAGAGGTT+TGG | 0.414748 | 7_4:+61998348 | None:intergenic |
| GAGCGTGTTCTTAAGCCTAA+TGG | 0.420052 | 7_4:-61998595 | Msa1169060:CDS |
| AGCCTCAGCAGCGACTTTAC+CGG | 0.421933 | 7_4:+61998063 | None:intergenic |
| GGAATTGGTGCACTTCTTGT+TGG | 0.423934 | 7_4:-61998574 | Msa1169060:CDS |
| TGTTGGTGAAGGTTCTTCAA+TGG | 0.432990 | 7_4:-61998800 | Msa1169060:CDS |
| ATTGTCTAGGGATCTTGATA+AGG | 0.440951 | 7_4:-61998650 | Msa1169060:CDS |
| TCGTTGACCCATTAAGGATC+TGG | 0.450738 | 7_4:+61999100 | None:intergenic |
| ATTTGATTTCGTATTGTCTA+GGG | 0.451800 | 7_4:-61998662 | Msa1169060:CDS |
| ACCTCAAGAACAAGCAAAGC+AGG | 0.456915 | 7_4:+61998619 | None:intergenic |
| AACTCTTCCTCCCCAACAAA+AGG | 0.457530 | 7_4:+61998013 | None:intergenic |
| AAGAGTTTGATTTCCTTGCC+TGG | 0.462393 | 7_4:-61997997 | Msa1169060:CDS |
| GTTAAAGCAATGAAACAGTT+GGG | 0.467346 | 7_4:-61998775 | Msa1169060:CDS |
| AACTTAGGCAAATATGAAAC+CGG | 0.474561 | 7_4:+61998292 | None:intergenic |
| TGTGTATGTGCATCAATTGT+GGG | 0.474661 | 7_4:-61997756 | Msa1169060:CDS |
| TTTCTTTCAGAATCGAATCT+GGG | 0.479609 | 7_4:-61998920 | Msa1169060:CDS |
| AAGAAGCGCAATCATTGAAA+TGG | 0.479695 | 7_4:+61999038 | None:intergenic |
| GTTTATCATCCTGGATTAGC+CGG | 0.485999 | 7_4:-61998082 | Msa1169060:CDS |
| TGAATGCAAATGTTAGTGAT+TGG | 0.490906 | 7_4:-61998210 | Msa1169060:CDS |
| CAAACCTCTCGTAGATCTGA+TGG | 0.493210 | 7_4:-61998347 | Msa1169060:CDS |
| GTTGTACTCAAGATGAATGC+AGG | 0.496244 | 7_4:-61997944 | Msa1169060:CDS |
| TATGAAACCGGCATCGGCAT+CGG | 0.497449 | 7_4:+61998304 | None:intergenic |
| ATTCTGAAAGAAATAGGAAG+TGG | 0.500053 | 7_4:+61998930 | None:intergenic |
| TTCTGATCAATAGGATATGA+AGG | 0.501367 | 7_4:+61998181 | None:intergenic |
| CAGTTTCTTTGAACCAGGCA+AGG | 0.506755 | 7_4:+61997984 | None:intergenic |
| GTTGGTTTATATTGATATTG+GGG | 0.508956 | 7_4:-61998245 | Msa1169060:CDS |
| AGAAGTGCACCAATTCCATT+AGG | 0.511486 | 7_4:+61998580 | None:intergenic |
| AAACGATATTCTTCATCTTG+AGG | 0.511737 | 7_4:+61998710 | None:intergenic |
| TAATGTCGGAGACGGAGAGC+TGG | 0.513267 | 7_4:-61998038 | Msa1169060:CDS |
| GTTTATATTGATATTGGGGT+AGG | 0.516469 | 7_4:-61998241 | Msa1169060:CDS |
| TGTTAAAGCAATGAAACAGT+TGG | 0.517899 | 7_4:-61998776 | Msa1169060:CDS |
| GCGACTTTACCGGCTAATCC+AGG | 0.522388 | 7_4:+61998073 | None:intergenic |
| TGTTTCTACTAGGAAGAGGT+TGG | 0.531207 | 7_4:-61998263 | Msa1169060:CDS |
| AGTTTGTAGATGTTTCTACT+AGG | 0.532167 | 7_4:-61998273 | Msa1169060:CDS |
| GGCAAATATGAAACCGGCAT+CGG | 0.532678 | 7_4:+61998298 | None:intergenic |
| TAGATGTTTCTACTAGGAAG+AGG | 0.535930 | 7_4:-61998267 | Msa1169060:CDS |
| TTCTGAAAGAAATAGGAAGT+GGG | 0.537629 | 7_4:+61998931 | None:intergenic |
| TTGCACAGTTTCTTTGAACC+AGG | 0.540355 | 7_4:+61997979 | None:intergenic |
| GGTTTGGTTAATGTCAAACT+AGG | 0.546298 | 7_4:+61998364 | None:intergenic |
| GTGTGTATGTGCATCAATTG+TGG | 0.551180 | 7_4:-61997757 | Msa1169060:CDS |
| AGATGTCCTGAGAAAGAAGA+TGG | 0.561930 | 7_4:-61997848 | Msa1169060:CDS |
| AATGTGGTCACTGAGTTAAT+GGG | 0.566533 | 7_4:-61998859 | Msa1169060:CDS |
| GTAGAAACATCTACAAACTT+AGG | 0.572228 | 7_4:+61998277 | None:intergenic |
| TTCTTTCAGAATCGAATCTG+GGG | 0.582119 | 7_4:-61998919 | Msa1169060:CDS |
| AATACCCTCTGTGTTGGTGA+AGG | 0.584957 | 7_4:-61998811 | Msa1169060:CDS |
| GACAAACAAGGAAAATTGCA+TGG | 0.587363 | 7_4:-61997807 | Msa1169060:CDS |
| TTGTCTTACGTGAAGAGACC+TGG | 0.587754 | 7_4:-61998115 | Msa1169060:CDS |
| CGTTAACTTGACAGTGAATG+TGG | 0.591281 | 7_4:-61998875 | Msa1169060:CDS |
| TGATAAACAAACGTGATACC+AGG | 0.592660 | 7_4:+61998097 | None:intergenic |
| TTATCTGATGTATTTGACAG+TGG | 0.598424 | 7_4:-61997902 | Msa1169060:CDS |
| GAGGCTGATAATGTCGGAGA+CGG | 0.602304 | 7_4:-61998046 | Msa1169060:CDS |
| GCTGCTGAGGCTGATAATGT+CGG | 0.602809 | 7_4:-61998052 | Msa1169060:CDS |
| GTCAAACTAGGACAATCAGC+AGG | 0.603229 | 7_4:+61998376 | None:intergenic |
| AACCAATGCCTTGACAAACA+AGG | 0.613471 | 7_4:-61997819 | Msa1169060:CDS |
| AGCCGGTAAAGTCGCTGCTG+AGG | 0.614776 | 7_4:-61998065 | Msa1169060:CDS |
| TCTGAAAGAAATAGGAAGTG+GGG | 0.627270 | 7_4:+61998932 | None:intergenic |
| CCTCAAGAACAAGCAAAGCA+GGG | 0.639198 | 7_4:+61998620 | None:intergenic |
| GAAGCGAATACCCTCTGTGT+TGG | 0.663485 | 7_4:-61998817 | Msa1169060:CDS |
| AGAACCTTCACCAACACAGA+GGG | 0.664286 | 7_4:+61998807 | None:intergenic |
| AAGAACCTTCACCAACACAG+AGG | 0.674044 | 7_4:+61998806 | None:intergenic |
| TACACAAGTCTCAGAAACAG+TGG | 0.674560 | 7_4:-61997779 | Msa1169060:CDS |
| GTGTATGTGCATCAATTGTG+GGG | 0.707496 | 7_4:-61997755 | Msa1169060:CDS |
| GGTTCCATCAGATCTACGAG+AGG | 0.709221 | 7_4:+61998343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATTTCGTATTGTCTA+GGG | - | chr7_4:61998209-61998228 | Msa1169060:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | + | chr7_4:61998431-61998450 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | - | chr7_4:61998624-61998643 | Msa1169060:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | - | chr7_4:61998625-61998644 | Msa1169060:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | - | chr7_4:61998626-61998645 | Msa1169060:CDS | 25.0% |
| !! | ATTTGATTTCGTATTGTCTA+GGG | - | chr7_4:61998209-61998228 | Msa1169060:CDS | 25.0% |
| !! | ATCTTTTCTTGAAAACAACA+AGG | + | chr7_4:61998431-61998450 | None:intergenic | 25.0% |
| !!! | AGGTTGGTTTATATTGATAT+TGG | - | chr7_4:61998624-61998643 | Msa1169060:CDS | 25.0% |
| !!! | GGTTGGTTTATATTGATATT+GGG | - | chr7_4:61998625-61998644 | Msa1169060:CDS | 25.0% |
| !! | GTTGGTTTATATTGATATTG+GGG | - | chr7_4:61998626-61998645 | Msa1169060:CDS | 25.0% |
| TGAATTTCCAGATCCTTAAT+GGG | - | chr7_4:61997764-61997783 | Msa1169060:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | - | chr7_4:61997858-61997877 | Msa1169060:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | + | chr7_4:61997943-61997962 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | + | chr7_4:61997944-61997963 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | + | chr7_4:61997950-61997969 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | - | chr7_4:61997950-61997969 | Msa1169060:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | - | chr7_4:61997951-61997970 | Msa1169060:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | - | chr7_4:61998095-61998114 | Msa1169060:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | - | chr7_4:61998096-61998115 | Msa1169060:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | - | chr7_4:61998114-61998133 | Msa1169060:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | + | chr7_4:61998163-61998182 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | + | chr7_4:61998164-61998183 | None:intergenic | 30.0% | |
| ! | CATTTGATTTCGTATTGTCT+AGG | - | chr7_4:61998208-61998227 | Msa1169060:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | + | chr7_4:61998582-61998601 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | + | chr7_4:61998597-61998616 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | - | chr7_4:61998598-61998617 | Msa1169060:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | - | chr7_4:61998630-61998649 | Msa1169060:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | - | chr7_4:61998661-61998680 | Msa1169060:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | + | chr7_4:61998693-61998712 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | + | chr7_4:61998702-61998721 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | - | chr7_4:61998969-61998988 | Msa1169060:CDS | 30.0% | |
| TGAATTTCCAGATCCTTAAT+GGG | - | chr7_4:61997764-61997783 | Msa1169060:CDS | 30.0% | |
| CGCTTTATCAAACTATGATT+TGG | - | chr7_4:61997858-61997877 | Msa1169060:CDS | 30.0% | |
| ! | TTCTGAAAGAAATAGGAAGT+GGG | + | chr7_4:61997943-61997962 | None:intergenic | 30.0% |
| ! | ATTCTGAAAGAAATAGGAAG+TGG | + | chr7_4:61997944-61997963 | None:intergenic | 30.0% |
| ! | GATTCGATTCTGAAAGAAAT+AGG | + | chr7_4:61997950-61997969 | None:intergenic | 30.0% |
| ATTTCTTTCAGAATCGAATC+TGG | - | chr7_4:61997950-61997969 | Msa1169060:CDS | 30.0% | |
| TTTCTTTCAGAATCGAATCT+GGG | - | chr7_4:61997951-61997970 | Msa1169060:CDS | 30.0% | |
| TGTTAAAGCAATGAAACAGT+TGG | - | chr7_4:61998095-61998114 | Msa1169060:CDS | 30.0% | |
| GTTAAAGCAATGAAACAGTT+GGG | - | chr7_4:61998096-61998115 | Msa1169060:CDS | 30.0% | |
| !! | TTGGGTTTTTCAACTGTTAT+TGG | - | chr7_4:61998114-61998133 | Msa1169060:CDS | 30.0% |
| AACGATATTCTTCATCTTGA+GGG | + | chr7_4:61998163-61998182 | None:intergenic | 30.0% | |
| AAACGATATTCTTCATCTTG+AGG | + | chr7_4:61998164-61998183 | None:intergenic | 30.0% | |
| ! | CATTTGATTTCGTATTGTCT+AGG | - | chr7_4:61998208-61998227 | Msa1169060:CDS | 30.0% |
| AACTTAGGCAAATATGAAAC+CGG | + | chr7_4:61998582-61998601 | None:intergenic | 30.0% | |
| GTAGAAACATCTACAAACTT+AGG | + | chr7_4:61998597-61998616 | None:intergenic | 30.0% | |
| ! | AGTTTGTAGATGTTTCTACT+AGG | - | chr7_4:61998598-61998617 | Msa1169060:CDS | 30.0% |
| GTTTATATTGATATTGGGGT+AGG | - | chr7_4:61998630-61998649 | Msa1169060:CDS | 30.0% | |
| TGAATGCAAATGTTAGTGAT+TGG | - | chr7_4:61998661-61998680 | Msa1169060:CDS | 30.0% | |
| TTCTGATCAATAGGATATGA+AGG | + | chr7_4:61998693-61998712 | None:intergenic | 30.0% | |
| TTGAAAGCTTTCTGATCAAT+AGG | + | chr7_4:61998702-61998721 | None:intergenic | 30.0% | |
| TTATCTGATGTATTTGACAG+TGG | - | chr7_4:61998969-61998988 | Msa1169060:CDS | 30.0% | |
| CATTAAGGATCTGGAAATTC+AGG | + | chr7_4:61997765-61997784 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | - | chr7_4:61997763-61997782 | Msa1169060:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | + | chr7_4:61997836-61997855 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | + | chr7_4:61997942-61997961 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | - | chr7_4:61997952-61997971 | Msa1169060:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | - | chr7_4:61998012-61998031 | Msa1169060:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | + | chr7_4:61998152-61998171 | None:intergenic | 35.0% | |
| ATTGTCTAGGGATCTTGATA+AGG | - | chr7_4:61998221-61998240 | Msa1169060:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | - | chr7_4:61998282-61998301 | Msa1169060:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | + | chr7_4:61998366-61998385 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | + | chr7_4:61998510-61998529 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | - | chr7_4:61998604-61998623 | Msa1169060:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | + | chr7_4:61998777-61998796 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | - | chr7_4:61998780-61998799 | Msa1169060:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | + | chr7_4:61999032-61999051 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | + | chr7_4:61999063-61999082 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | - | chr7_4:61999064-61999083 | Msa1169060:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | - | chr7_4:61999115-61999134 | Msa1169060:CDS | 35.0% | |
| CATTAAGGATCTGGAAATTC+AGG | + | chr7_4:61997765-61997784 | None:intergenic | 35.0% | |
| CTGAATTTCCAGATCCTTAA+TGG | - | chr7_4:61997763-61997782 | Msa1169060:CDS | 35.0% | |
| ! | AAGAAGCGCAATCATTGAAA+TGG | + | chr7_4:61997836-61997855 | None:intergenic | 35.0% |
| TCTGAAAGAAATAGGAAGTG+GGG | + | chr7_4:61997942-61997961 | None:intergenic | 35.0% | |
| TTCTTTCAGAATCGAATCTG+GGG | - | chr7_4:61997952-61997971 | Msa1169060:CDS | 35.0% | |
| AATGTGGTCACTGAGTTAAT+GGG | - | chr7_4:61998012-61998031 | Msa1169060:CDS | 35.0% | |
| TCATCTTGAGGGAGAAAAAA+CGG | + | chr7_4:61998152-61998171 | None:intergenic | 35.0% | |
| ATTGTCTAGGGATCTTGATA+AGG | - | chr7_4:61998221-61998240 | Msa1169060:CDS | 35.0% | |
| GTTCTTAAGCCTAATGGAAT+TGG | - | chr7_4:61998282-61998301 | Msa1169060:CDS | 35.0% | |
| GATCTCAACAATGATGAAAC+TGG | + | chr7_4:61998366-61998385 | None:intergenic | 35.0% | |
| ! | GGTTTGGTTAATGTCAAACT+AGG | + | chr7_4:61998510-61998529 | None:intergenic | 35.0% |
| ! | TAGATGTTTCTACTAGGAAG+AGG | - | chr7_4:61998604-61998623 | Msa1169060:CDS | 35.0% |
| TGATAAACAAACGTGATACC+AGG | + | chr7_4:61998777-61998796 | None:intergenic | 35.0% | |
| ATCACGTTTGTTTATCATCC+TGG | - | chr7_4:61998780-61998799 | Msa1169060:CDS | 35.0% | |
| TTATCACCATCTTCTTTCTC+AGG | + | chr7_4:61999032-61999051 | None:intergenic | 35.0% | |
| !! | GCAATTTTCCTTGTTTGTCA+AGG | + | chr7_4:61999063-61999082 | None:intergenic | 35.0% |
| GACAAACAAGGAAAATTGCA+TGG | - | chr7_4:61999064-61999083 | Msa1169060:CDS | 35.0% | |
| TGTGTATGTGCATCAATTGT+GGG | - | chr7_4:61999115-61999134 | Msa1169060:CDS | 35.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | - | chr7_4:61997996-61998015 | Msa1169060:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | - | chr7_4:61998011-61998030 | Msa1169060:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | - | chr7_4:61998071-61998090 | Msa1169060:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | + | chr7_4:61998294-61998313 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | + | chr7_4:61998552-61998571 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | - | chr7_4:61998608-61998627 | Msa1169060:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | - | chr7_4:61998789-61998808 | Msa1169060:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | - | chr7_4:61998874-61998893 | Msa1169060:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | + | chr7_4:61998895-61998914 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | - | chr7_4:61998927-61998946 | Msa1169060:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | - | chr7_4:61999023-61999042 | Msa1169060:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | - | chr7_4:61999052-61999071 | Msa1169060:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | + | chr7_4:61999057-61999076 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | - | chr7_4:61999092-61999111 | Msa1169060:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | - | chr7_4:61999114-61999133 | Msa1169060:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | - | chr7_4:61999116-61999135 | Msa1169060:CDS | 40.0% | |
| ! | CGTTAACTTGACAGTGAATG+TGG | - | chr7_4:61997996-61998015 | Msa1169060:CDS | 40.0% |
| GAATGTGGTCACTGAGTTAA+TGG | - | chr7_4:61998011-61998030 | Msa1169060:CDS | 40.0% | |
| ! | TGTTGGTGAAGGTTCTTCAA+TGG | - | chr7_4:61998071-61998090 | Msa1169060:CDS | 40.0% |
| ! | AGAAGTGCACCAATTCCATT+AGG | + | chr7_4:61998294-61998313 | None:intergenic | 40.0% |
| !! | ATCGGTTTTTCACTCACAAG+TGG | + | chr7_4:61998552-61998571 | None:intergenic | 40.0% |
| ! | TGTTTCTACTAGGAAGAGGT+TGG | - | chr7_4:61998608-61998627 | Msa1169060:CDS | 40.0% |
| !! | GTTTATCATCCTGGATTAGC+CGG | - | chr7_4:61998789-61998808 | Msa1169060:CDS | 40.0% |
| ! | AAGAGTTTGATTTCCTTGCC+TGG | - | chr7_4:61998874-61998893 | Msa1169060:CDS | 40.0% |
| TTGCACAGTTTCTTTGAACC+AGG | + | chr7_4:61998895-61998914 | None:intergenic | 40.0% | |
| GTTGTACTCAAGATGAATGC+AGG | - | chr7_4:61998927-61998946 | Msa1169060:CDS | 40.0% | |
| AGATGTCCTGAGAAAGAAGA+TGG | - | chr7_4:61999023-61999042 | Msa1169060:CDS | 40.0% | |
| AACCAATGCCTTGACAAACA+AGG | - | chr7_4:61999052-61999071 | Msa1169060:CDS | 40.0% | |
| ! | TTCCTTGTTTGTCAAGGCAT+TGG | + | chr7_4:61999057-61999076 | None:intergenic | 40.0% |
| TACACAAGTCTCAGAAACAG+TGG | - | chr7_4:61999092-61999111 | Msa1169060:CDS | 40.0% | |
| GTGTGTATGTGCATCAATTG+TGG | - | chr7_4:61999114-61999133 | Msa1169060:CDS | 40.0% | |
| GTGTATGTGCATCAATTGTG+GGG | - | chr7_4:61999116-61999135 | Msa1169060:CDS | 40.0% | |
| TCGTTGACCCATTAAGGATC+TGG | + | chr7_4:61997774-61997793 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | + | chr7_4:61997780-61997799 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | - | chr7_4:61998060-61998079 | Msa1169060:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | + | chr7_4:61998067-61998086 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | + | chr7_4:61998068-61998087 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | + | chr7_4:61998148-61998167 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | + | chr7_4:61998254-61998273 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | + | chr7_4:61998255-61998274 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | - | chr7_4:61998276-61998295 | Msa1169060:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | - | chr7_4:61998297-61998316 | Msa1169060:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | + | chr7_4:61998498-61998517 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | + | chr7_4:61998526-61998545 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | - | chr7_4:61998524-61998543 | Msa1169060:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | + | chr7_4:61998576-61998595 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | - | chr7_4:61998756-61998775 | Msa1169060:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | - | chr7_4:61998847-61998866 | Msa1169060:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | - | chr7_4:61998848-61998867 | Msa1169060:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | + | chr7_4:61998861-61998880 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | + | chr7_4:61998890-61998909 | None:intergenic | 45.0% | |
| TCGTTGACCCATTAAGGATC+TGG | + | chr7_4:61997774-61997793 | None:intergenic | 45.0% | |
| GTCGAATCGTTGACCCATTA+AGG | + | chr7_4:61997780-61997799 | None:intergenic | 45.0% | |
| ! | AATACCCTCTGTGTTGGTGA+AGG | - | chr7_4:61998060-61998079 | Msa1169060:CDS | 45.0% |
| AGAACCTTCACCAACACAGA+GGG | + | chr7_4:61998067-61998086 | None:intergenic | 45.0% | |
| AAGAACCTTCACCAACACAG+AGG | + | chr7_4:61998068-61998087 | None:intergenic | 45.0% | |
| CTTGAGGGAGAAAAAACGGT+TGG | + | chr7_4:61998148-61998167 | None:intergenic | 45.0% | |
| CCTCAAGAACAAGCAAAGCA+GGG | + | chr7_4:61998254-61998273 | None:intergenic | 45.0% | |
| ACCTCAAGAACAAGCAAAGC+AGG | + | chr7_4:61998255-61998274 | None:intergenic | 45.0% | |
| GAGCGTGTTCTTAAGCCTAA+TGG | - | chr7_4:61998276-61998295 | Msa1169060:CDS | 45.0% | |
| GGAATTGGTGCACTTCTTGT+TGG | - | chr7_4:61998297-61998316 | Msa1169060:CDS | 45.0% | |
| GTCAAACTAGGACAATCAGC+AGG | + | chr7_4:61998498-61998517 | None:intergenic | 45.0% | |
| CATCAGATCTACGAGAGGTT+TGG | + | chr7_4:61998526-61998545 | None:intergenic | 45.0% | |
| CAAACCTCTCGTAGATCTGA+TGG | - | chr7_4:61998524-61998543 | Msa1169060:CDS | 45.0% | |
| GGCAAATATGAAACCGGCAT+CGG | + | chr7_4:61998576-61998595 | None:intergenic | 45.0% | |
| TTGTCTTACGTGAAGAGACC+TGG | - | chr7_4:61998756-61998775 | Msa1169060:CDS | 45.0% | |
| ! | GAGAGCTGGATCCTTTTGTT+GGG | - | chr7_4:61998847-61998866 | Msa1169060:CDS | 45.0% |
| ! | AGAGCTGGATCCTTTTGTTG+GGG | - | chr7_4:61998848-61998867 | Msa1169060:CDS | 45.0% |
| AACTCTTCCTCCCCAACAAA+AGG | + | chr7_4:61998861-61998880 | None:intergenic | 45.0% | |
| CAGTTTCTTTGAACCAGGCA+AGG | + | chr7_4:61998890-61998909 | None:intergenic | 45.0% | |
| GAAGCGAATACCCTCTGTGT+TGG | - | chr7_4:61998054-61998073 | Msa1169060:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | - | chr7_4:61998251-61998270 | Msa1169060:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | + | chr7_4:61998531-61998550 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | - | chr7_4:61998560-61998579 | Msa1169060:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | + | chr7_4:61998570-61998589 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | - | chr7_4:61998819-61998838 | Msa1169060:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | - | chr7_4:61998825-61998844 | Msa1169060:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | - | chr7_4:61998846-61998865 | Msa1169060:CDS | 50.0% |
| GAAGCGAATACCCTCTGTGT+TGG | - | chr7_4:61998054-61998073 | Msa1169060:CDS | 50.0% | |
| CCCTGCTTTGCTTGTTCTTG+AGG | - | chr7_4:61998251-61998270 | Msa1169060:CDS | 50.0% | |
| GGTTCCATCAGATCTACGAG+AGG | + | chr7_4:61998531-61998550 | None:intergenic | 50.0% | |
| TGAAAAACCGATGCCGATGC+CGG | - | chr7_4:61998560-61998579 | Msa1169060:CDS | 50.0% | |
| !! | TATGAAACCGGCATCGGCAT+CGG | + | chr7_4:61998570-61998589 | None:intergenic | 50.0% |
| ! | GCTGCTGAGGCTGATAATGT+CGG | - | chr7_4:61998819-61998838 | Msa1169060:CDS | 50.0% |
| ! | GAGGCTGATAATGTCGGAGA+CGG | - | chr7_4:61998825-61998844 | Msa1169060:CDS | 50.0% |
| ! | GGAGAGCTGGATCCTTTTGT+TGG | - | chr7_4:61998846-61998865 | Msa1169060:CDS | 50.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | + | chr7_4:61998801-61998820 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | + | chr7_4:61998811-61998830 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | - | chr7_4:61998833-61998852 | Msa1169060:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | - | chr7_4:61998851-61998870 | Msa1169060:CDS | 55.0% |
| ! | GCGACTTTACCGGCTAATCC+AGG | + | chr7_4:61998801-61998820 | None:intergenic | 55.0% |
| AGCCTCAGCAGCGACTTTAC+CGG | + | chr7_4:61998811-61998830 | None:intergenic | 55.0% | |
| TAATGTCGGAGACGGAGAGC+TGG | - | chr7_4:61998833-61998852 | Msa1169060:CDS | 55.0% | |
| ! | GCTGGATCCTTTTGTTGGGG+AGG | - | chr7_4:61998851-61998870 | Msa1169060:CDS | 55.0% |
| AGCCGGTAAAGTCGCTGCTG+AGG | - | chr7_4:61998806-61998825 | Msa1169060:CDS | 60.0% | |
| AGCCGGTAAAGTCGCTGCTG+AGG | - | chr7_4:61998806-61998825 | Msa1169060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 61997748 | 61999145 | 61997748 | ID=Msa1169060;Name=Msa1169060 |
| chr7_4 | mRNA | 61997748 | 61999145 | 61997748 | ID=Msa1169060-mRNA-1;Parent=Msa1169060;Name=Msa1169060-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|465 |
| chr7_4 | exon | 61997748 | 61999145 | 61997748 | ID=Msa1169060-mRNA-1:exon:19602;Parent=Msa1169060-mRNA-1 |
| chr7_4 | CDS | 61997748 | 61999145 | 61997748 | ID=Msa1169060-mRNA-1:cds;Parent=Msa1169060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
