AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085730 MtrunA17_Chr2g0322391 93.058 605 29 4 1 595 1 602 0.0 1040
Msa1085730 MtrunA17_Chr4g0075201 49.597 496 179 15 75 551 36 479 1.21e-122 371
Msa1085730 MtrunA17_Chr2g0288871 48.343 513 187 19 75 551 62 532 2.68e-118 362
Msa1085730 MtrunA17_Chr4g0025051 43.333 570 233 16 80 587 35 576 2.78e-112 347
Msa1085730 MtrunA17_Chr4g0025061 41.156 571 226 19 58 556 36 568 1.32e-110 344
Msa1085730 MtrunA17_Chr4g0024391 41.700 494 208 13 162 583 1 486 3.67e-97 305
Msa1085730 MtrunA17_Chr3g0099641 40.664 482 207 14 75 548 34 444 1.29e-95 300
Msa1085730 MtrunA17_Chr7g0270831 37.209 516 186 18 76 574 26 420 1.96e-77 252
Msa1085730 MtrunA17_Chr2g0302391 35.236 403 187 13 159 547 66 408 5.45e-53 187
Msa1085730 MtrunA17_Chr7g0216891 31.120 482 231 18 166 573 45 499 1.95e-46 172
Msa1085730 MtrunA17_Chr4g0051181 42.748 262 124 7 326 562 227 487 1.62e-42 159
Msa1085730 MtrunA17_Chr4g0060271 37.500 272 134 7 151 402 60 315 4.25e-40 154
Msa1085730 MtrunA17_Chr5g0419241 84.615 65 7 1 308 372 46 107 1.82e-31 117
Msa1085730 MtrunA17_Chr4g0001361 31.140 228 100 8 319 545 139 310 5.26e-26 108
Msa1085730 MtrunA17_Chr3g0101131 38.122 181 83 5 252 404 297 476 7.18e-25 109
Msa1085730 MtrunA17_Chr5g0445311 44.628 121 56 3 294 404 306 425 2.23e-24 107
Msa1085730 MtrunA17_Chr3g0106491 54.430 79 35 1 324 402 347 424 5.27e-24 105
Msa1085730 MtrunA17_Chr3g0106491 47.619 63 31 2 342 404 198 258 4.91e-11 65.5
Msa1085730 MtrunA17_Chr3g0079691 37.423 163 77 3 246 404 415 556 1.19e-23 105
Msa1085730 MtrunA17_Chr3g0079691 42.683 82 44 3 343 423 281 360 3.07e-12 69.7
Msa1085730 MtrunA17_Chr1g0150271 39.516 124 62 3 282 402 48 161 1.64e-23 100
Msa1085730 MtrunA17_Chr1g0150281 48.889 90 46 0 327 416 125 214 3.22e-23 100
Msa1085730 MtrunA17_Chr5g0447701 51.724 87 41 1 316 402 226 311 3.66e-23 102
Msa1085730 MtrunA17_Chr3g0136961 52.632 76 36 0 325 400 121 196 4.43e-23 99.8
Msa1085730 MtrunA17_Chr7g0218081 50.575 87 42 1 318 404 386 471 4.67e-23 103
Msa1085730 MtrunA17_Chr7g0218081 52.459 61 27 2 342 402 228 286 1.85e-12 70.1
Msa1085730 MtrunA17_Chr4g0004911 53.165 79 36 1 324 402 318 395 1.11e-22 101
Msa1085730 MtrunA17_Chr4g0004911 40.000 75 42 2 328 402 172 243 1.04e-11 67.4
Msa1085730 MtrunA17_Chr7g0243891 53.571 84 38 1 321 404 353 435 1.42e-22 101
Msa1085730 MtrunA17_Chr5g0432161 52.381 84 39 1 321 404 400 482 1.45e-22 102
Msa1085730 MtrunA17_Chr5g0432161 35.714 112 60 4 291 402 203 302 4.58e-11 65.9
Msa1085730 MtrunA17_Chr4g0068541 51.948 77 36 1 326 402 192 267 2.04e-22 100
Msa1085730 MtrunA17_Chr7g0270191 46.739 92 42 2 326 417 129 213 6.32e-22 96.7
Msa1085730 MtrunA17_Chr5g0418191 50.617 81 39 1 324 404 302 381 7.71e-22 98.6
Msa1085730 MtrunA17_Chr5g0418191 49.180 61 29 2 342 402 151 209 1.22e-11 67.0
Msa1085730 MtrunA17_Chr5g0418781 47.126 87 45 1 313 399 95 180 1.92e-21 94.7
Msa1085730 MtrunA17_Chr7g0249311 51.250 80 38 1 325 404 375 453 3.37e-21 98.2
Msa1085730 MtrunA17_Chr7g0249311 47.692 65 32 2 338 402 175 237 7.66e-11 65.1
Msa1085730 MtrunA17_Chr2g0294231 49.351 77 38 1 326 402 187 262 3.54e-21 95.9
Msa1085730 MtrunA17_Chr4g0042831 49.383 81 40 1 324 404 260 339 3.98e-21 95.9
Msa1085730 MtrunA17_Chr4g0042831 40.741 81 45 2 342 422 145 222 3.06e-11 65.5
Msa1085730 MtrunA17_Chr7g0249301 50.617 81 39 1 324 404 274 353 4.71e-21 95.5
Msa1085730 MtrunA17_Chr7g0249301 47.692 65 32 2 338 402 58 120 4.06e-11 65.1
Msa1085730 MtrunA17_Chr1g0150801 50.685 73 35 1 327 399 87 158 7.89e-21 89.7
Msa1085730 MtrunA17_Chr7g0224801 50.704 71 34 1 331 401 82 151 2.21e-20 88.6
Msa1085730 MtrunA17_Chr1g0194481 40.000 115 65 2 326 437 142 255 3.09e-20 92.0
Msa1085730 MtrunA17_Chr2g0333851 30.085 236 87 9 320 545 142 309 3.15e-20 92.0
Msa1085730 MtrunA17_Chr4g0051881 51.351 74 35 1 329 402 165 237 6.05e-20 91.7
Msa1085730 MtrunA17_Chr1g0147881 47.561 82 43 0 326 407 246 327 9.97e-20 90.9
Msa1085730 MtrunA17_Chr3g0129361 46.067 89 46 2 325 413 127 213 1.26e-19 88.2
Msa1085730 MtrunA17_Chr8g0383351 45.556 90 46 3 325 413 142 229 7.88e-19 85.9
Msa1085730 MtrunA17_Chr7g0263531 43.529 85 47 1 318 402 337 420 1.34e-18 88.6
Msa1085730 MtrunA17_Chr7g0263531 50.000 60 28 2 343 402 190 247 1.69e-11 66.6
Msa1085730 MtrunA17_Chr8g0379461 54.930 71 31 1 333 402 66 136 1.45e-18 85.5
Msa1085730 MtrunA17_Chr4g0074001 50.649 77 37 1 326 402 343 418 1.79e-18 89.0
Msa1085730 MtrunA17_Chr8g0386241 40.659 91 53 1 315 405 76 165 2.17e-18 83.2
Msa1085730 MtrunA17_Chr5g0443131 48.649 74 37 1 329 402 144 216 2.20e-18 86.3
Msa1085730 MtrunA17_Chr8g0335811 44.444 81 44 1 320 400 132 211 4.22e-18 83.6
Msa1085730 MtrunA17_Chr1g0184691 47.436 78 41 0 326 403 277 354 4.87e-18 86.3
Msa1085730 MtrunA17_Chr8g0383251 44.595 74 40 1 329 402 95 167 5.13e-18 82.4
Msa1085730 MtrunA17_Chr4g0053281 46.835 79 42 0 326 404 250 328 6.75e-18 85.5
Msa1085730 MtrunA17_Chr5g0401821 47.368 76 40 0 326 401 183 258 1.15e-17 83.6
Msa1085730 MtrunA17_Chr7g0270051 38.384 99 55 1 312 404 17 115 1.38e-17 83.2
Msa1085730 MtrunA17_Chr2g0284321 54.839 62 28 0 342 403 35 96 1.52e-17 82.0
Msa1085730 MtrunA17_Chr2g0319961 51.429 70 34 0 333 402 71 140 1.78e-17 82.8
Msa1085730 MtrunA17_Chr4g0071521 48.000 75 39 0 326 400 229 303 2.15e-17 83.6
Msa1085730 MtrunA17_Chr3g0129321 45.946 74 39 1 329 402 105 177 8.19e-17 79.3
Msa1085730 MtrunA17_Chr7g0228941 47.887 71 37 0 329 399 39 109 1.07e-16 76.6
Msa1085730 MtrunA17_Chr2g0289181 44.156 77 43 0 337 413 9 85 1.28e-16 79.7
Msa1085730 MtrunA17_Chr1g0188941 44.156 77 42 1 326 402 35 110 1.42e-16 75.9
Msa1085730 MtrunA17_Chr7g0248721 45.000 80 42 2 320 399 119 196 2.68e-16 78.2
Msa1085730 MtrunA17_Chr3g0139021 45.946 74 40 0 326 399 298 371 4.23e-16 80.9
Msa1085730 MtrunA17_Chr7g0238921 35.484 155 89 5 258 403 32 184 1.30e-15 78.2
Msa1085730 MtrunA17_Chr6g0485431 36.774 155 79 6 266 402 61 214 3.17e-15 77.8
Msa1085730 MtrunA17_Chr2g0293481 45.833 72 39 0 343 414 268 339 4.96e-15 77.8
Msa1085730 MtrunA17_Chr8g0348311 50.000 64 32 0 339 402 152 215 6.12e-15 76.6
Msa1085730 MtrunA17_Chr7g0248691 42.683 82 35 1 333 402 133 214 1.87e-14 74.7
Msa1085730 MtrunA17_Chr1g0202461 40.659 91 52 1 339 429 258 346 4.72e-14 74.3
Msa1085730 MtrunA17_Chr1g0189391 42.466 73 40 2 329 400 84 155 1.23e-13 72.4
Msa1085730 MtrunA17_Chr3g0126391 48.684 76 32 2 329 397 115 190 1.67e-13 72.0
Msa1085730 MtrunA17_Chr8g0387501 45.161 62 34 0 341 402 128 189 1.21e-12 68.6
Msa1085730 MtrunA17_Chr7g0244971 34.579 107 67 2 318 421 98 204 1.73e-12 68.6
Msa1085730 MtrunA17_Chr7g0244981 36.449 107 65 2 318 421 97 203 3.68e-12 67.4
Msa1085730 MtrunA17_Chr8g0347251 36.036 111 56 3 302 397 83 193 3.84e-12 68.2
Msa1085730 MtrunA17_Chr4g0024401 41.964 112 43 5 58 165 28 121 1.56e-11 62.0
Msa1085730 MtrunA17_Chr2g0315361 40.541 74 42 1 326 397 132 205 3.29e-11 64.7
Msa1085730 MtrunA17_Chr5g0447711 36.782 87 54 1 316 402 204 289 3.43e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085730 AT1G62300.1 49.455 459 184 10 127 564 121 552 1.73e-120 368
Msa1085730 AT4G04450.1 44.643 504 239 14 68 548 17 503 2.05e-109 338
Msa1085730 AT4G04450.2 48.210 419 193 10 144 548 1 409 2.68e-101 314
Msa1085730 AT4G22070.4 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1085730 AT4G22070.3 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1085730 AT4G22070.2 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1085730 AT4G22070.1 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1085730 AT4G01720.1 40.580 414 171 13 150 545 87 443 4.62e-66 224
Msa1085730 AT5G15130.1 32.809 445 230 16 161 550 35 465 5.29e-50 182
Msa1085730 AT5G15130.2 32.494 437 226 16 169 550 1 423 3.62e-48 176
Msa1085730 AT1G68150.1 38.849 278 113 9 165 435 97 324 1.73e-45 165
Msa1085730 AT1G18860.1 37.748 302 122 6 325 561 222 522 9.82e-42 158
Msa1085730 AT1G69810.1 33.739 329 187 9 161 477 25 334 3.80e-38 145
Msa1085730 AT1G69810.2 45.604 182 92 4 298 477 100 276 1.55e-36 139
Msa1085730 AT2G38470.1 44.628 121 65 2 324 444 344 462 1.87e-25 110
Msa1085730 AT2G38470.1 45.205 73 37 3 330 402 173 242 8.10e-11 65.1
Msa1085730 AT1G80840.1 30.603 232 98 7 319 545 118 291 4.05e-24 103
Msa1085730 AT4G26640.5 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1085730 AT4G26640.6 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1085730 AT4G26640.4 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1085730 AT4G26640.3 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1085730 AT4G26640.7 55.128 78 34 1 325 402 324 400 1.29e-23 105
Msa1085730 AT4G26640.1 55.128 78 34 1 325 402 292 368 1.51e-23 104
Msa1085730 AT4G26640.2 55.128 78 34 1 325 402 364 440 1.99e-23 104
Msa1085730 AT5G07100.2 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1085730 AT5G07100.4 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1085730 AT5G07100.5 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1085730 AT5G07100.3 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1085730 AT2G04880.2 47.674 86 44 1 321 406 262 346 1.53e-22 101
Msa1085730 AT2G04880.2 33.103 145 84 5 330 466 92 231 7.55e-11 65.1
Msa1085730 AT1G13960.1 53.165 79 36 1 324 402 391 468 2.00e-22 101
Msa1085730 AT1G13960.1 49.180 61 29 2 342 402 229 287 6.48e-12 68.6
Msa1085730 AT5G07100.1 40.625 128 66 4 279 402 172 293 2.06e-22 98.6
Msa1085730 AT1G13960.2 53.165 79 36 1 324 402 238 315 2.14e-22 99.8
Msa1085730 AT1G13960.2 49.180 61 29 2 342 402 76 134 1.20e-11 67.0
Msa1085730 AT2G04880.1 47.674 86 44 1 321 406 286 370 2.22e-22 101
Msa1085730 AT4G31800.2 58.462 65 27 0 341 405 110 174 5.42e-22 95.9
Msa1085730 AT5G56270.1 53.750 80 36 1 325 404 470 548 6.07e-22 100
Msa1085730 AT4G31800.1 58.462 65 27 0 341 405 175 239 6.37e-22 97.4
Msa1085730 AT1G29860.1 41.964 112 58 2 326 431 120 230 6.42e-22 96.7
Msa1085730 AT5G49520.1 49.351 77 38 1 326 402 205 280 7.50e-22 98.6
Msa1085730 AT5G26170.1 50.685 73 35 1 328 400 99 170 8.08e-22 93.2
Msa1085730 AT2G25000.2 42.708 96 55 0 311 406 72 167 1.02e-21 94.7
Msa1085730 AT2G25000.4 42.708 96 55 0 311 406 72 167 1.02e-21 94.7
Msa1085730 AT2G25000.3 42.708 96 55 0 311 406 94 189 1.09e-21 95.1
Msa1085730 AT2G25000.1 42.708 96 55 0 311 406 115 210 1.83e-21 95.1
Msa1085730 AT2G03340.1 48.276 87 44 1 318 404 391 476 2.67e-21 98.2
Msa1085730 AT1G69310.4 42.157 102 55 2 301 399 103 203 6.86e-21 93.6
Msa1085730 AT1G69310.2 42.157 102 55 2 301 399 103 203 6.86e-21 93.6
Msa1085730 AT1G69310.1 42.157 102 55 2 301 399 103 203 6.86e-21 93.6
Msa1085730 AT4G18170.1 51.948 77 36 1 326 402 156 231 8.71e-21 94.0
Msa1085730 AT3G01080.1 46.512 86 45 1 317 402 281 365 3.01e-20 94.0
Msa1085730 AT3G01080.2 46.512 86 45 1 317 402 319 403 3.02e-20 94.4
Msa1085730 AT2G47260.1 50.649 77 37 1 326 402 158 233 3.44e-20 92.8
Msa1085730 AT2G30250.1 50.000 80 39 1 325 404 311 389 4.13e-20 93.2
Msa1085730 AT4G26440.1 50.633 79 38 1 326 404 356 433 8.77e-20 93.6
Msa1085730 AT4G26440.1 50.000 62 29 2 342 403 178 237 3.89e-12 69.7
Msa1085730 AT3G01970.1 51.351 74 35 1 328 401 51 123 8.95e-20 86.7
Msa1085730 AT1G64000.1 41.346 104 56 2 316 419 88 186 2.17e-19 87.0
Msa1085730 AT5G46350.1 50.000 74 36 1 329 402 170 242 2.23e-19 90.1
Msa1085730 AT5G41570.1 50.000 82 39 2 319 399 74 154 2.87e-19 86.3
Msa1085730 AT4G39410.1 44.444 81 44 1 320 400 201 280 3.25e-19 89.0
Msa1085730 AT1G55600.1 43.820 89 49 1 316 404 281 368 7.99e-19 90.1
Msa1085730 AT5G13080.1 50.685 73 35 1 329 401 54 125 9.94e-19 83.6
Msa1085730 AT4G30935.1 50.649 77 37 1 326 402 315 390 2.15e-18 88.6
Msa1085730 AT2G46130.1 48.718 78 39 1 322 399 10 86 3.13e-18 80.9
Msa1085730 AT4G24240.1 50.000 76 38 0 326 401 265 340 3.87e-18 86.7
Msa1085730 AT2G23320.1 57.627 59 25 0 343 401 241 299 4.76e-18 85.9
Msa1085730 AT3G62340.1 50.000 78 38 1 329 406 105 181 7.11e-18 84.7
Msa1085730 AT2G30590.1 48.352 91 40 3 323 406 288 378 7.90e-18 86.3
Msa1085730 AT5G28650.1 49.383 81 35 2 326 400 240 320 8.54e-18 85.5
Msa1085730 AT2G44745.1 46.667 75 39 1 325 399 128 201 8.86e-18 83.2
Msa1085730 AT5G64810.1 47.887 71 36 1 329 399 97 166 9.97e-18 82.0
Msa1085730 AT2G24570.1 50.000 74 37 0 326 399 227 300 1.02e-17 85.1
Msa1085730 AT4G31550.2 48.649 74 38 0 326 399 229 302 2.15e-17 84.0
Msa1085730 AT4G31550.1 48.649 74 38 0 326 399 230 303 2.20e-17 84.0
Msa1085730 AT1G29280.1 47.143 70 37 0 333 402 65 134 3.78e-17 82.0
Msa1085730 AT3G04670.1 48.148 81 36 2 326 400 240 320 4.68e-17 83.2
Msa1085730 AT3G58710.1 43.820 89 49 1 315 402 43 131 3.65e-16 79.3
Msa1085730 AT3G58710.2 43.820 89 49 1 315 402 42 130 3.73e-16 79.3
Msa1085730 AT2G37260.3 49.333 75 34 2 337 408 264 337 4.94e-16 80.5
Msa1085730 AT2G37260.3 48.438 64 31 2 343 406 86 147 7.12e-13 70.9
Msa1085730 AT2G37260.2 49.333 75 34 2 337 408 262 335 5.12e-16 80.1
Msa1085730 AT2G37260.2 48.438 64 31 2 343 406 84 145 7.54e-13 70.5
Msa1085730 AT1G69310.3 39.216 102 54 3 301 399 103 199 5.37e-16 79.3
Msa1085730 AT2G37260.1 49.333 75 34 2 337 408 344 417 9.57e-16 80.1
Msa1085730 AT2G37260.1 48.438 64 31 2 343 406 166 227 1.06e-12 70.9
Msa1085730 AT4G01250.1 37.143 105 53 1 342 433 128 232 1.23e-15 78.6
Msa1085730 AT5G52830.1 50.746 67 33 0 336 402 159 225 1.47e-15 79.0
Msa1085730 AT4G23550.1 48.485 66 34 0 337 402 135 200 2.17e-15 77.8
Msa1085730 AT2G34830.1 44.737 76 41 1 328 402 200 275 4.18e-15 78.2
Msa1085730 AT1G30650.1 44.737 76 41 1 328 402 202 277 4.64e-15 78.2
Msa1085730 AT2G34830.2 44.737 76 41 1 328 402 209 284 5.47e-15 77.8
Msa1085730 AT2G46130.2 42.391 92 44 4 322 413 10 92 1.09e-14 70.9
Msa1085730 AT5G43290.1 43.421 76 41 2 329 403 100 174 2.66e-14 73.9
Msa1085730 AT4G31800.3 61.538 39 15 0 341 379 175 213 2.72e-12 67.4
Msa1085730 AT2G46400.1 41.772 79 44 1 321 397 83 161 8.10e-12 67.0
Msa1085730 AT2G21900.1 40.909 66 38 1 337 402 104 168 1.32e-11 64.7
Msa1085730 AT5G45050.2 47.541 61 32 0 342 402 1152 1212 1.92e-11 67.8
Msa1085730 AT5G45050.4 47.541 61 32 0 342 402 1041 1101 1.92e-11 67.8
Msa1085730 AT5G45050.1 47.541 61 32 0 342 402 1180 1240 1.98e-11 67.8

Find 120 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTCCAAGACAATTTA+TGG 0.128951 7_2:-86644797 Msa1085730:CDS
ATTGCTCTTGTGAGGTAATT+TGG 0.146915 7_2:+86642358 None:intergenic
TTTGACTGATCTTGACTTCT+TGG 0.186141 7_2:+86644733 None:intergenic
GGTTATTAGGGAACTGGTTT+TGG 0.212904 7_2:+86642251 None:intergenic
CTGCTATTACTTCAATTATT+GGG 0.212910 7_2:-86642030 Msa1085730:CDS
GCTGCTATTACTTCAATTAT+TGG 0.246668 7_2:-86642031 Msa1085730:CDS
TGGTATAAGAAGCTTGAATT+TGG 0.269953 7_2:+86646030 None:intergenic
CTTGATGAGGAGAAACAAAA+TGG 0.281238 7_2:-86644832 Msa1085730:CDS
TTGAGAATTCTATTTGCTTA+TGG 0.285405 7_2:+86646010 None:intergenic
AAATGGGAATGGTGGAGTTT+TGG 0.297182 7_2:-86644815 Msa1085730:CDS
TAGCTACTCTACTGAGGAAT+TGG 0.308792 7_2:+86641886 None:intergenic
TTGCTCTTGTGAGGTAATTT+GGG 0.310844 7_2:+86642359 None:intergenic
CTAGTACCGTTATTATTGTT+TGG 0.316751 7_2:+86641998 None:intergenic
TTTGGTTTGGTGACTGAGTT+AGG 0.325584 7_2:+86642269 None:intergenic
AGGGAAATTGGAACTGGTTA+GGG 0.327267 7_2:+86642227 None:intergenic
ACATGCTTGATGAGGGTAAT+AGG 0.328005 7_2:-86644951 Msa1085730:CDS
ATTTCATGGTTGACTTGAAA+TGG 0.347073 7_2:+86645898 None:intergenic
GTTGCTATGCTTGAAGAATA+AGG 0.353526 7_2:+86642331 None:intergenic
AATAACGGTACTAGCAATAA+TGG 0.353919 7_2:-86641989 Msa1085730:CDS
GGGAAATTGGAACTGGTTAG+GGG 0.369219 7_2:+86642228 None:intergenic
AAACTTATATAGTCACAAAA+TGG 0.380131 7_2:-86645947 Msa1085730:CDS
GCTAAAGCTGCAGTGAAGTT+AGG 0.387680 7_2:+86642055 None:intergenic
AGGGTTGATGAGATATTTCA+TGG 0.388556 7_2:+86645884 None:intergenic
CCAAGACAATTTATGGAGCT+TGG 0.403211 7_2:-86644790 Msa1085730:CDS
AAGGGAAATTGGAACTGGTT+AGG 0.406882 7_2:+86642226 None:intergenic
TTTATGGCCAGTGGAGGGCT+TGG 0.407903 7_2:-86646072 Msa1085730:CDS
GGATGTCAATGGAGAAAGTA+TGG 0.409848 7_2:-86644374 Msa1085730:CDS
TTACACCGATCCTTCTCTCT+TGG 0.412872 7_2:-86645722 Msa1085730:CDS
TGCTATGTCTTCCTCCATCA+TGG 0.419633 7_2:+86645168 None:intergenic
TATCGATGCACCATGGCCTT+AGG 0.425405 7_2:-86644311 Msa1085730:CDS
GAAATTGGAACTGGTTAGGG+GGG 0.429542 7_2:+86642230 None:intergenic
GAGGGAAGGGAAATTGGAAC+TGG 0.429543 7_2:+86642221 None:intergenic
TGTACCATTTCCATAGCTGC+TGG 0.431979 7_2:+86642448 None:intergenic
TGCTTTGCCTCCAGCAGCTA+TGG 0.435611 7_2:-86642458 Msa1085730:CDS
GCTTGTTCAACATTTGTTTG+AGG 0.439934 7_2:+86644553 None:intergenic
AGTCCATCAGCACTTGTCAT+TGG 0.447523 7_2:+86642388 None:intergenic
TCCAATGTAACAGTTGGAAA+TGG 0.451153 7_2:+86642292 None:intergenic
AGACACAAGTTCTTCAACCT+TGG 0.451540 7_2:+86644681 None:intergenic
CGATAATAAGCTCGAGGACA+CGG 0.453138 7_2:+86644329 None:intergenic
ACAATAGCTAACAACACTAA+TGG 0.455086 7_2:-86641959 Msa1085730:CDS
TCCATTTCCAACTGTTACAT+TGG 0.455513 7_2:-86642293 Msa1085730:CDS
GCCTCCAGCAGCTATGGAAA+TGG 0.457149 7_2:-86642452 Msa1085730:CDS
ACAATTTATGGAGCTTGGAT+TGG 0.459747 7_2:-86644785 Msa1085730:CDS
TGAGGGAGGTGTAGAGGTAG+AGG 0.463067 7_2:+86645783 None:intergenic
TGAATTTGGATCTGAATCAA+TGG 0.468905 7_2:+86646044 None:intergenic
GGAAATTGGAACTGGTTAGG+GGG 0.470023 7_2:+86642229 None:intergenic
CACCTTCATTCTCTCAAGCT+CGG 0.471926 7_2:+86644993 None:intergenic
CCAAGCTCCATAAATTGTCT+TGG 0.475471 7_2:+86644790 None:intergenic
GAAGAGCAAAAGCAAGTGAT+TGG 0.479656 7_2:-86644862 Msa1085730:CDS
AACCCTTGCTTTCCTCATAG+TGG 0.482051 7_2:+86644525 None:intergenic
GCAGATGCATTGGATGAGTA+TGG 0.482506 7_2:-86644914 Msa1085730:CDS
TGAAAAGAAGGAATCCGATC+GGG 0.482638 7_2:-86644653 Msa1085730:CDS
AGCTACTCTACTGAGGAATT+GGG 0.491290 7_2:+86641887 None:intergenic
ATTTAGTGAGGGAGGTGTAG+AGG 0.493533 7_2:+86645777 None:intergenic
TGCTATTACTTCAATTATTG+GGG 0.494301 7_2:-86642029 Msa1085730:CDS
AGGTCTCATTTCATGATCAA+AGG 0.497698 7_2:+86645864 None:intergenic
AAGTCTAGTTCATTGATGAT+AGG 0.502804 7_2:+86645844 None:intergenic
TGTGTCTGATCATGAAAAGA+AGG 0.508518 7_2:-86644665 Msa1085730:CDS
GGAGAGTCCAAGCCCTCCAC+TGG 0.521274 7_2:+86646065 None:intergenic
GGTCTCATTTCATGATCAAA+GGG 0.522587 7_2:+86645865 None:intergenic
GCAGCTAAAACTCGATCTGC+AGG 0.523186 7_2:+86644610 None:intergenic
AGGTTGTCCTGTGAGAAAAC+AGG 0.526028 7_2:-86644291 Msa1085730:intron
AGCTCGATCCGAGGCTAACA+TGG 0.526714 7_2:-86644494 Msa1085730:intron
ATACTTATCACAACATATGA+AGG 0.527047 7_2:-86642493 Msa1085730:CDS
GATAATAAGCTCGAGGACAC+GGG 0.530098 7_2:+86644330 None:intergenic
TTGAAATTTATGGCCAGTGG+AGG 0.532791 7_2:-86646078 None:intergenic
GGATTGATCATTGCTTGTGT+TGG 0.535532 7_2:+86645189 None:intergenic
ACAACACATTGCAGATGCAT+TGG 0.536029 7_2:-86644924 Msa1085730:CDS
CATAATTTGCACAGGTACAA+AGG 0.536458 7_2:-86642534 Msa1085730:intron
ACTTTGAATTCCAAGAGAGA+AGG 0.536469 7_2:+86645712 None:intergenic
GAGAAAGTATGGACAGAAGA+TGG 0.537071 7_2:-86644363 Msa1085730:CDS
GGACCAATGACAAGTGCTGA+TGG 0.540715 7_2:-86642391 Msa1085730:CDS
GCTGCAAGAATGTTACTGTC+AGG 0.544674 7_2:-86642412 Msa1085730:CDS
TTGATGAGGAGAAACAAAAT+GGG 0.547963 7_2:-86644831 Msa1085730:CDS
GAGAAACAAAATGGGAATGG+TGG 0.550957 7_2:-86644823 Msa1085730:CDS
AGATCAATGATGGATGTCAA+TGG 0.557548 7_2:-86644385 Msa1085730:CDS
TCATTGAAATTTATGGCCAG+TGG 0.559553 7_2:-86646081 None:intergenic
CTGAGGAACATGCTTGATGA+GGG 0.560805 7_2:-86644958 Msa1085730:CDS
GAGTATGGTGCAAGACAAGA+AGG 0.561536 7_2:-86644899 Msa1085730:CDS
GAGCAAAAGCAAGTGATTGG+TGG 0.565607 7_2:-86644859 Msa1085730:CDS
GTTAGGTCCAATGTAACAGT+TGG 0.567146 7_2:+86642286 None:intergenic
ATGAAAAGAAGGAATCCGAT+CGG 0.570044 7_2:-86644654 Msa1085730:CDS
AGGCCACTATGAGGAAAGCA+AGG 0.570684 7_2:-86644528 Msa1085730:CDS
ACATCAAGTAACAATACCAT+TGG 0.571515 7_2:-86641929 Msa1085730:CDS
TAACAATGAGGAAGATTCCA+AGG 0.572334 7_2:-86644698 Msa1085730:CDS
TGAAATTTATGGCCAGTGGA+GGG 0.583495 7_2:-86646077 None:intergenic
GCACAGCCAAACAATAATAA+CGG 0.583839 7_2:-86642004 Msa1085730:CDS
CACAGGACAACCTAAGGCCA+TGG 0.587201 7_2:+86644301 None:intergenic
AAGCAATGATCAATCCATGA+TGG 0.591359 7_2:-86645182 Msa1085730:CDS
CTATGCTTGAAGAATAAGGA+AGG 0.594569 7_2:+86642335 None:intergenic
GGTGCAAGACAAGAAGGTAG+AGG 0.597094 7_2:-86644893 Msa1085730:CDS
GAATTCCAAGAGAGAAGGAT+CGG 0.597121 7_2:+86645717 None:intergenic
GAAGTGTACCATGTTAGCCT+CGG 0.600264 7_2:+86644486 None:intergenic
AGGCAGATGCAAGGTTGTGA+TGG 0.603220 7_2:+86645803 None:intergenic
AACAAGCTGAGGCCACTATG+AGG 0.607043 7_2:-86644537 Msa1085730:CDS
ATGATGATGAAGATTTAGTG+AGG 0.611103 7_2:+86645765 None:intergenic
ACTGAGGAACATGCTTGATG+AGG 0.611969 7_2:-86644959 Msa1085730:CDS
AGCCGAGCTTGAGAGAATGA+AGG 0.613065 7_2:-86644995 Msa1085730:CDS
AACAAATGTTGAACAAGCTG+AGG 0.613373 7_2:-86644548 Msa1085730:CDS
AAGGAAGGATTGCTCTTGTG+AGG 0.621106 7_2:+86642350 None:intergenic
TAGCATTAACTGTGTCAGCA+AGG 0.623284 7_2:+86642089 None:intergenic
TAGAGGTAGAGGCAGATGCA+AGG 0.626052 7_2:+86645794 None:intergenic
TGATGAAGATTTAGTGAGGG+AGG 0.630220 7_2:+86645769 None:intergenic
CGAGCTTGAGAGAATGAAGG+TGG 0.635577 7_2:-86644992 Msa1085730:CDS
TGATGATGAAGATTTAGTGA+GGG 0.636759 7_2:+86645766 None:intergenic
ACCATTTCCATAGCTGCTGG+AGG 0.637423 7_2:+86642451 None:intergenic
GAGGAGAAACAAAATGGGAA+TGG 0.637776 7_2:-86644826 Msa1085730:CDS
TATGGACAGAAGATGGCGAA+AGG 0.642826 7_2:-86644356 Msa1085730:CDS
CAATGATCAATCCATGATGG+AGG 0.645307 7_2:-86645179 Msa1085730:CDS
AGACAAAAGAGCTAAGCTTG+AGG 0.649723 7_2:-86645134 Msa1085730:intron
TTCAGTTAGAGCTCGATCCG+AGG 0.654330 7_2:-86644503 Msa1085730:CDS
GGCCACTATGAGGAAAGCAA+GGG 0.654709 7_2:-86644527 Msa1085730:CDS
ATTACTTGCAAATAACAATG+AGG 0.658433 7_2:-86644710 Msa1085730:CDS
AGCTTATTATCGATGCACCA+TGG 0.661870 7_2:-86644318 Msa1085730:CDS
GAAAAGAAGGAATCCGATCG+GGG 0.662543 7_2:-86644652 Msa1085730:CDS
ACTGTGTCAGCAAGGTTCTG+TGG 0.667152 7_2:+86642097 None:intergenic
GATTGGTGGAAAACTTGATG+AGG 0.667331 7_2:-86644845 Msa1085730:CDS
GTGCATCGATAATAAGCTCG+AGG 0.678750 7_2:+86644323 None:intergenic
AGGTGGAGAATCATCAACTG+AGG 0.706865 7_2:-86644975 Msa1085730:CDS
AATGTCTGACCAAATACCTG+AGG 0.730527 7_2:+86642187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAGTGATATTATATATA+TGG + chr7_2:86642466-86642485 None:intergenic 10.0%
!! TTTCAAAAAAAAAATGAAAT+TGG + chr7_2:86644720-86644739 None:intergenic 10.0%
!! ACTATTAGAAAACATTAAAT+TGG - chr7_2:86642479-86642498 Msa1085730:CDS 15.0%
!!! ATTTTCTCATTACTAAATTT+TGG - chr7_2:86642563-86642582 Msa1085730:intron 15.0%
!!! TAATTTCTATAAACTTTTTC+AGG + chr7_2:86644124-86644143 None:intergenic 15.0%
!! AATAAAGACAAAAGATAATT+TGG - chr7_2:86644516-86644535 Msa1085730:CDS 15.0%
!! CATCTTAAAAATAAAAATGA+CGG + chr7_2:86644693-86644712 None:intergenic 15.0%
!!! GTCATTTTTATTTTTAAGAT+GGG - chr7_2:86644692-86644711 Msa1085730:CDS 15.0%
!!! ACTTTTTTTTGTAAACATTT+TGG - chr7_2:86644956-86644975 Msa1085730:CDS 15.0%
!!! TAATTTCAGTAAACTTTTTT+AGG + chr7_2:86645065-86645084 None:intergenic 15.0%
!! AAACTTATATAGTCACAAAA+TGG - chr7_2:86642011-86642030 Msa1085730:CDS 20.0%
!! ATTGCAATATCAATAACATA+TGG + chr7_2:86642356-86642375 None:intergenic 20.0%
!! TATATATATGGAATACCAAA+GGG + chr7_2:86642454-86642473 None:intergenic 20.0%
!! TTATATATATGGAATACCAA+AGG + chr7_2:86642455-86642474 None:intergenic 20.0%
!!! AACAAATTTTCCCATAAAAA+AGG - chr7_2:86642513-86642532 Msa1085730:CDS 20.0%
!!! ACAAATTTTCCCATAAAAAA+GGG - chr7_2:86642514-86642533 Msa1085730:CDS 20.0%
!!! TTTTTACTTCCCTTTTTTAT+GGG + chr7_2:86642526-86642545 None:intergenic 20.0%
!!! TTTTTTACTTCCCTTTTTTA+TGG + chr7_2:86642527-86642546 None:intergenic 20.0%
!!! TATTTAATTTGTTTGGTGAA+TGG - chr7_2:86642590-86642609 Msa1085730:intron 20.0%
!! TAAATGTTAGCTATAATAGT+TGG - chr7_2:86643704-86643723 Msa1085730:intron 20.0%
!!! CTGTTTTATATTGACTTATT+TGG + chr7_2:86644220-86644239 None:intergenic 20.0%
!!! GTTACTGTAGTTTAATATTT+TGG + chr7_2:86644266-86644285 None:intergenic 20.0%
!!! TTATATCTTCCATTTTATTC+TGG + chr7_2:86644338-86644357 None:intergenic 20.0%
!! TGTTTATATTGTCATTAAAC+TGG - chr7_2:86644382-86644401 Msa1085730:CDS 20.0%
!! AAAAGATAATTTGGACATTA+GGG - chr7_2:86644525-86644544 Msa1085730:CDS 20.0%
!!! CGTCATTTTTATTTTTAAGA+TGG - chr7_2:86644691-86644710 Msa1085730:CDS 20.0%
!!! TAACTTTTTATTTAGAGCTT+AGG - chr7_2:86644744-86644763 Msa1085730:CDS 20.0%
!! TATACAAACACGTTTAAAAA+AGG + chr7_2:86644856-86644875 None:intergenic 20.0%
!! TTTAAACGTGTTTGTATAAA+TGG - chr7_2:86644858-86644877 Msa1085730:CDS 20.0%
!!! TTTTTTTGTAAACATTTTGG+TGG - chr7_2:86644959-86644978 Msa1085730:CDS 20.0%
!!! TAATTCGGGTTTTATAAAAA+TGG + chr7_2:86645354-86645373 None:intergenic 20.0%
! TTGAGAATTCTATTTGCTTA+TGG + chr7_2:86641951-86641970 None:intergenic 25.0%
!!! AGATTTGTTTTTGTTGTTTG+TGG + chr7_2:86642040-86642059 None:intergenic 25.0%
!!! TGGTTGCTATTTAATTTGTT+TGG - chr7_2:86642583-86642602 Msa1085730:intron 25.0%
! GCACATATTATATATGACAT+TGG - chr7_2:86642689-86642708 Msa1085730:intron 25.0%
! TTAAATGAATAATCATCGAG+TGG - chr7_2:86642901-86642920 Msa1085730:intron 25.0%
! ATTACTTGCAAATAACAATG+AGG - chr7_2:86643248-86643267 Msa1085730:intron 25.0%
!! GAAGAATGAAATGTTTGTTT+TGG - chr7_2:86643513-86643532 Msa1085730:intron 25.0%
! CAATAATATCCAATCAATCA+TGG - chr7_2:86643934-86643953 Msa1085730:intron 25.0%
! TAAAACTGTTTATCCAAACA+TGG + chr7_2:86643994-86644013 None:intergenic 25.0%
! AAAGACTTATGAGACTATTT+GGG + chr7_2:86644181-86644200 None:intergenic 25.0%
!! GACAATATAAACATGCTTTT+AGG + chr7_2:86644375-86644394 None:intergenic 25.0%
! TTATATTGTCATTAAACTGG+AGG - chr7_2:86644385-86644404 Msa1085730:CDS 25.0%
! TCGATATAATCAAACTCTTA+AGG + chr7_2:86644468-86644487 None:intergenic 25.0%
! TTATATCGATGCTTGTTTAA+CGG - chr7_2:86644479-86644498 Msa1085730:intron 25.0%
! CAAAAGATAATTTGGACATT+AGG - chr7_2:86644524-86644543 Msa1085730:CDS 25.0%
! AAAGATAATTTGGACATTAG+GGG - chr7_2:86644526-86644545 Msa1085730:CDS 25.0%
! TCAAAAAAATTGAGCAATGT+GGG + chr7_2:86644579-86644598 None:intergenic 25.0%
! ATCAAAAAAATTGAGCAATG+TGG + chr7_2:86644580-86644599 None:intergenic 25.0%
!!! GCTCAATTTTTTTGATTGTT+TGG - chr7_2:86644584-86644603 Msa1085730:CDS 25.0%
! TTAGGTTTATACGCATTATT+TGG - chr7_2:86644762-86644781 Msa1085730:CDS 25.0%
! TAGGTTTATACGCATTATTT+GGG - chr7_2:86644763-86644782 Msa1085730:CDS 25.0%
! ACGTTTAAAAAAGGTAGAAA+AGG + chr7_2:86644847-86644866 None:intergenic 25.0%
!! GGATTACTACAATTGTATTT+TGG + chr7_2:86644917-86644936 None:intergenic 25.0%
! AGTTGAAATTCGCTTATTAT+GGG + chr7_2:86644939-86644958 None:intergenic 25.0%
! AAGTTGAAATTCGCTTATTA+TGG + chr7_2:86644940-86644959 None:intergenic 25.0%
! TTTATAAAAATGGTTCACGA+CGG + chr7_2:86645344-86645363 None:intergenic 25.0%
!! ACAGCTTGATAACTTTAATT+CGG + chr7_2:86645369-86645388 None:intergenic 25.0%
! ATACTTATCACAACATATGA+AGG - chr7_2:86645465-86645484 Msa1085730:intron 25.0%
!! TTGAACCAATCAAAATTTTC+AGG - chr7_2:86645795-86645814 Msa1085730:CDS 25.0%
! CTGCTATTACTTCAATTATT+GGG - chr7_2:86645928-86645947 Msa1085730:CDS 25.0%
! TGCTATTACTTCAATTATTG+GGG - chr7_2:86645929-86645948 Msa1085730:CDS 25.0%
!!! AATTGGGATTGTTGATTTTA+GGG + chr7_2:86646058-86646077 None:intergenic 25.0%
TGAATTTGGATCTGAATCAA+TGG + chr7_2:86641917-86641936 None:intergenic 30.0%
TGGTATAAGAAGCTTGAATT+TGG + chr7_2:86641931-86641950 None:intergenic 30.0%
!! ATTTCATGGTTGACTTGAAA+TGG + chr7_2:86642063-86642082 None:intergenic 30.0%
! AAGTCTAGTTCATTGATGAT+AGG + chr7_2:86642117-86642136 None:intergenic 30.0%
! TGATGATGAAGATTTAGTGA+GGG + chr7_2:86642195-86642214 None:intergenic 30.0%
! ATGATGATGAAGATTTAGTG+AGG + chr7_2:86642196-86642215 None:intergenic 30.0%
TCACTATTGTATAAACCATG+TGG - chr7_2:86642315-86642334 Msa1085730:CDS 30.0%
TTGATGAGGAGAAACAAAAT+GGG - chr7_2:86643127-86643146 Msa1085730:intron 30.0%
! TTTGGTTCCAAGACAATTTA+TGG - chr7_2:86643161-86643180 Msa1085730:intron 30.0%
! CTTTTGTATCAGATCAATGA+TGG - chr7_2:86643563-86643582 Msa1085730:intron 30.0%
AGCATGCATATAAGATCAAT+TGG + chr7_2:86643817-86643836 None:intergenic 30.0%
! TAGTAAAAGTACATGAGCTA+TGG + chr7_2:86643866-86643885 None:intergenic 30.0%
AATTACCTGAAAAGAGCTTA+TGG - chr7_2:86644139-86644158 Msa1085730:intron 30.0%
ATTACCTGAAAAGAGCTTAT+GGG - chr7_2:86644140-86644159 Msa1085730:intron 30.0%
CAAAGACTTATGAGACTATT+TGG + chr7_2:86644182-86644201 None:intergenic 30.0%
ACACTCAAACCAGAATAAAA+TGG - chr7_2:86644326-86644345 Msa1085730:CDS 30.0%
AAGATAATTTGGACATTAGG+GGG - chr7_2:86644527-86644546 Msa1085730:CDS 30.0%
GTTGAAATTCGCTTATTATG+GGG + chr7_2:86644938-86644957 None:intergenic 30.0%
AATTACCTGAAATGAGCTTA+TGG - chr7_2:86645080-86645099 Msa1085730:intron 30.0%
AAGCACTATTGAGACTATTT+GGG + chr7_2:86645121-86645140 None:intergenic 30.0%
TAAGCACTATTGAGACTATT+TGG + chr7_2:86645122-86645141 None:intergenic 30.0%
!!! TTTTTTACGTCTCTATGCTA+AGG + chr7_2:86645292-86645311 None:intergenic 30.0%
! CAGCTTGATAACTTTAATTC+GGG + chr7_2:86645368-86645387 None:intergenic 30.0%
! ACATGTAACATAATTTGCAC+AGG - chr7_2:86645416-86645435 Msa1085730:intron 30.0%
!! GAAGTCCTGAAAATTTTGAT+TGG + chr7_2:86645803-86645822 None:intergenic 30.0%
GCTGCTATTACTTCAATTAT+TGG - chr7_2:86645927-86645946 Msa1085730:CDS 30.0%
CTAGTACCGTTATTATTGTT+TGG + chr7_2:86645963-86645982 None:intergenic 30.0%
AATAACGGTACTAGCAATAA+TGG - chr7_2:86645969-86645988 Msa1085730:CDS 30.0%
ACAATAGCTAACAACACTAA+TGG - chr7_2:86645999-86646018 Msa1085730:CDS 30.0%
ACATCAAGTAACAATACCAT+TGG - chr7_2:86646029-86646048 Msa1085730:CDS 30.0%
!!! GAATTGGGATTGTTGATTTT+AGG + chr7_2:86646059-86646078 None:intergenic 30.0%
!!! TTTTTGAGGTTGTTGTGTTG+AGG + chr7_2:86641981-86642000 None:intergenic 35.0%
ACAACCTCAAAAACTTCAAG+TGG - chr7_2:86641988-86642007 Msa1085730:CDS 35.0%
! GTTTCCACTTGAAGTTTTTG+AGG + chr7_2:86641995-86642014 None:intergenic 35.0%
!! AGGGTTGATGAGATATTTCA+TGG + chr7_2:86642077-86642096 None:intergenic 35.0%
GGTCTCATTTCATGATCAAA+GGG + chr7_2:86642096-86642115 None:intergenic 35.0%
AGGTCTCATTTCATGATCAA+AGG + chr7_2:86642097-86642116 None:intergenic 35.0%
ACTTTGAATTCCAAGAGAGA+AGG + chr7_2:86642249-86642268 None:intergenic 35.0%
AACATATGGCCACAATATCA+AGG + chr7_2:86642342-86642361 None:intergenic 35.0%
CAAATGAGTTAATCACCCTT+TGG - chr7_2:86642436-86642455 Msa1085730:CDS 35.0%
AAGCAATGATCAATCCATGA+TGG - chr7_2:86642776-86642795 Msa1085730:intron 35.0%
CTTGATGAGGAGAAACAAAA+TGG - chr7_2:86643126-86643145 Msa1085730:intron 35.0%
ACAATTTATGGAGCTTGGAT+TGG - chr7_2:86643173-86643192 Msa1085730:intron 35.0%
TTTGACTGATCTTGACTTCT+TGG + chr7_2:86643228-86643247 None:intergenic 35.0%
TAACAATGAGGAAGATTCCA+AGG - chr7_2:86643260-86643279 Msa1085730:intron 35.0%
TGTGTCTGATCATGAAAAGA+AGG - chr7_2:86643293-86643312 Msa1085730:intron 35.0%
ATGAAAAGAAGGAATCCGAT+CGG - chr7_2:86643304-86643323 Msa1085730:intron 35.0%
GCTTGTTCAACATTTGTTTG+AGG + chr7_2:86643408-86643427 None:intergenic 35.0%
AACAAATGTTGAACAAGCTG+AGG - chr7_2:86643410-86643429 Msa1085730:intron 35.0%
!! AGATCAATGATGGATGTCAA+TGG - chr7_2:86643573-86643592 Msa1085730:intron 35.0%
! TAACATACCTGTTTTCTCAC+AGG + chr7_2:86643677-86643696 None:intergenic 35.0%
GGCACTGTTATAATATGTCA+TGG - chr7_2:86643734-86643753 Msa1085730:intron 35.0%
! AGCTTGAGATTGATTTAGCT+AGG - chr7_2:86643898-86643917 Msa1085730:intron 35.0%
TATAAAACAGACCCCTAATG+AGG - chr7_2:86644230-86644249 Msa1085730:intron 35.0%
ACTACAGTAACAACCAAAGT+CGG - chr7_2:86644275-86644294 Msa1085730:intron 35.0%
ATTGTCATTAAACTGGAGGT+TGG - chr7_2:86644389-86644408 Msa1085730:intron 35.0%
! TCAAACTCTTAAGGTGCTTT+CGG + chr7_2:86644459-86644478 None:intergenic 35.0%
ACCATTTGAGTCCAATGATT+TGG - chr7_2:86644991-86645010 Msa1085730:CDS 35.0%
ACCAAATCATTGGACTCAAA+TGG + chr7_2:86644995-86645014 None:intergenic 35.0%
!! TTTGAGTCCAATGATTTGGT+TGG - chr7_2:86644995-86645014 Msa1085730:CDS 35.0%
ACTTTGACCAACCAAATCAT+TGG + chr7_2:86645005-86645024 None:intergenic 35.0%
! CATAATTTGCACAGGTACAA+AGG - chr7_2:86645424-86645443 Msa1085730:intron 35.0%
TTGCTCTTGTGAGGTAATTT+GGG + chr7_2:86645602-86645621 None:intergenic 35.0%
ATTGCTCTTGTGAGGTAATT+TGG + chr7_2:86645603-86645622 None:intergenic 35.0%
CTATGCTTGAAGAATAAGGA+AGG + chr7_2:86645626-86645645 None:intergenic 35.0%
GTTGCTATGCTTGAAGAATA+AGG + chr7_2:86645630-86645649 None:intergenic 35.0%
TCCATTTCCAACTGTTACAT+TGG - chr7_2:86645665-86645684 Msa1085730:intron 35.0%
TCCAATGTAACAGTTGGAAA+TGG + chr7_2:86645669-86645688 None:intergenic 35.0%
!! AATTTTGAGGGAAGGGAAAT+TGG + chr7_2:86645746-86645765 None:intergenic 35.0%
! AATTTTCTGCCTCAGGTATT+TGG - chr7_2:86645762-86645781 Msa1085730:CDS 35.0%
GCACAGCCAAACAATAATAA+CGG - chr7_2:86645954-86645973 Msa1085730:CDS 35.0%
TGATGAAGATTTAGTGAGGG+AGG + chr7_2:86642192-86642211 None:intergenic 40.0%
GAATTCCAAGAGAGAAGGAT+CGG + chr7_2:86642244-86642263 None:intergenic 40.0%
GGATTGATCATTGCTTGTGT+TGG + chr7_2:86642772-86642791 None:intergenic 40.0%
CAATGATCAATCCATGATGG+AGG - chr7_2:86642779-86642798 Msa1085730:intron 40.0%
AGACAAAAGAGCTAAGCTTG+AGG - chr7_2:86642824-86642843 Msa1085730:intron 40.0%
ACATGCTTGATGAGGGTAAT+AGG - chr7_2:86643007-86643026 Msa1085730:intron 40.0%
ACAACACATTGCAGATGCAT+TGG - chr7_2:86643034-86643053 Msa1085730:intron 40.0%
GAAGAGCAAAAGCAAGTGAT+TGG - chr7_2:86643096-86643115 Msa1085730:intron 40.0%
GATTGGTGGAAAACTTGATG+AGG - chr7_2:86643113-86643132 Msa1085730:intron 40.0%
GAGGAGAAACAAAATGGGAA+TGG - chr7_2:86643132-86643151 Msa1085730:intron 40.0%
GAGAAACAAAATGGGAATGG+TGG - chr7_2:86643135-86643154 Msa1085730:intron 40.0%
!! AAATGGGAATGGTGGAGTTT+TGG - chr7_2:86643143-86643162 Msa1085730:intron 40.0%
CCAAGCTCCATAAATTGTCT+TGG + chr7_2:86643171-86643190 None:intergenic 40.0%
CCAAGACAATTTATGGAGCT+TGG - chr7_2:86643168-86643187 Msa1085730:intron 40.0%
AGACACAAGTTCTTCAACCT+TGG + chr7_2:86643280-86643299 None:intergenic 40.0%
TGAAAAGAAGGAATCCGATC+GGG - chr7_2:86643305-86643324 Msa1085730:intron 40.0%
GGATGTCAATGGAGAAAGTA+TGG - chr7_2:86643584-86643603 Msa1085730:intron 40.0%
! GAGAAAGTATGGACAGAAGA+TGG - chr7_2:86643595-86643614 Msa1085730:intron 40.0%
AGCTTATTATCGATGCACCA+TGG - chr7_2:86643640-86643659 Msa1085730:intron 40.0%
! TTTTCTCACAGGACAACCTA+AGG + chr7_2:86643666-86643685 None:intergenic 40.0%
!! GCTATAATAGTTGGTGACAC+AGG - chr7_2:86643713-86643732 Msa1085730:intron 40.0%
CAGAGTTGAGAACTCAAAAC+AGG + chr7_2:86643779-86643798 None:intergenic 40.0%
AAACGTGTGCCATGATTGAT+TGG + chr7_2:86643946-86643965 None:intergenic 40.0%
GTCTTCAACATTTCGATGCT+AGG - chr7_2:86643968-86643987 Msa1085730:intron 40.0%
CTACAGTAACAACCAAAGTC+GGG - chr7_2:86644276-86644295 Msa1085730:intron 40.0%
! AACTGGAGGTTGGAGTTTTA+AGG - chr7_2:86644399-86644418 Msa1085730:intron 40.0%
ACATGCCATAAGCTCATTTC+AGG + chr7_2:86645088-86645107 None:intergenic 40.0%
ACTAAAACAGACCCCTAATG+AGG - chr7_2:86645170-86645189 Msa1085730:CDS 40.0%
ACTTCAACCTACCTCATTAG+GGG + chr7_2:86645184-86645203 None:intergenic 40.0%
GACTTCAACCTACCTCATTA+GGG + chr7_2:86645185-86645204 None:intergenic 40.0%
TGACTTCAACCTACCTCATT+AGG + chr7_2:86645186-86645205 None:intergenic 40.0%
ACTGAAGTAACGACCAAAGT+CGG - chr7_2:86645215-86645234 Msa1085730:intron 40.0%
GTTAGGTCCAATGTAACAGT+TGG + chr7_2:86645675-86645694 None:intergenic 40.0%
!! TTTGGTTTGGTGACTGAGTT+AGG + chr7_2:86645692-86645711 None:intergenic 40.0%
!!! TTAGGGAACTGGTTTTGGTT+TGG + chr7_2:86645705-86645724 None:intergenic 40.0%
!! GGTTATTAGGGAACTGGTTT+TGG + chr7_2:86645710-86645729 None:intergenic 40.0%
AGGGAAATTGGAACTGGTTA+GGG + chr7_2:86645734-86645753 None:intergenic 40.0%
AAGGGAAATTGGAACTGGTT+AGG + chr7_2:86645735-86645754 None:intergenic 40.0%
!! GGCAGAAAATTTTGAGGGAA+GGG + chr7_2:86645753-86645772 None:intergenic 40.0%
!! AGGCAGAAAATTTTGAGGGA+AGG + chr7_2:86645754-86645773 None:intergenic 40.0%
! CCTGAGGCAGAAAATTTTGA+GGG + chr7_2:86645758-86645777 None:intergenic 40.0%
! ACCTGAGGCAGAAAATTTTG+AGG + chr7_2:86645759-86645778 None:intergenic 40.0%
AATGTCTGACCAAATACCTG+AGG + chr7_2:86645774-86645793 None:intergenic 40.0%
TAGCATTAACTGTGTCAGCA+AGG + chr7_2:86645872-86645891 None:intergenic 40.0%
!!! GTTGATTTTAGGGCTTCCAA+TGG + chr7_2:86646048-86646067 None:intergenic 40.0%
! ATTTAGTGAGGGAGGTGTAG+AGG + chr7_2:86642184-86642203 None:intergenic 45.0%
TTACACCGATCCTTCTCTCT+TGG - chr7_2:86642236-86642255 Msa1085730:CDS 45.0%
CCACAATATCAAGGTCCACA+TGG + chr7_2:86642333-86642352 None:intergenic 45.0%
CCATGTGGACCTTGATATTG+TGG - chr7_2:86642330-86642349 Msa1085730:CDS 45.0%
TGCTATGTCTTCCTCCATCA+TGG + chr7_2:86642793-86642812 None:intergenic 45.0%
CACCTTCATTCTCTCAAGCT+CGG + chr7_2:86642968-86642987 None:intergenic 45.0%
AGGTGGAGAATCATCAACTG+AGG - chr7_2:86642983-86643002 Msa1085730:intron 45.0%
ACTGAGGAACATGCTTGATG+AGG - chr7_2:86642999-86643018 Msa1085730:intron 45.0%
CTGAGGAACATGCTTGATGA+GGG - chr7_2:86643000-86643019 Msa1085730:intron 45.0%
GCAGATGCATTGGATGAGTA+TGG - chr7_2:86643044-86643063 Msa1085730:intron 45.0%
GAGTATGGTGCAAGACAAGA+AGG - chr7_2:86643059-86643078 Msa1085730:intron 45.0%
GAGCAAAAGCAAGTGATTGG+TGG - chr7_2:86643099-86643118 Msa1085730:intron 45.0%
GAAAAGAAGGAATCCGATCG+GGG - chr7_2:86643306-86643325 Msa1085730:intron 45.0%
! GCTTCTTTCTTTTCCCCGAT+CGG + chr7_2:86643322-86643341 None:intergenic 45.0%
AACCCTTGCTTTCCTCATAG+TGG + chr7_2:86643436-86643455 None:intergenic 45.0%
! GAAGTGTACCATGTTAGCCT+CGG + chr7_2:86643475-86643494 None:intergenic 45.0%
TATGGACAGAAGATGGCGAA+AGG - chr7_2:86643602-86643621 Msa1085730:intron 45.0%
GATAATAAGCTCGAGGACAC+GGG + chr7_2:86643631-86643650 None:intergenic 45.0%
CGATAATAAGCTCGAGGACA+CGG + chr7_2:86643632-86643651 None:intergenic 45.0%
! GTGCATCGATAATAAGCTCG+AGG + chr7_2:86643638-86643657 None:intergenic 45.0%
AGGTTGTCCTGTGAGAAAAC+AGG - chr7_2:86643667-86643686 Msa1085730:intron 45.0%
TTTCGATGCTAGGCCATGTT+TGG - chr7_2:86643978-86643997 Msa1085730:intron 45.0%
ACCTGAAAAGAGCTTATGGG+TGG - chr7_2:86644143-86644162 Msa1085730:intron 45.0%
CCTGAAAAGAGCTTATGGGT+GGG - chr7_2:86644144-86644163 Msa1085730:intron 45.0%
AAACAGACCCCTAATGAGGT+AGG - chr7_2:86644234-86644253 Msa1085730:intron 45.0%
GCTTCAACCTACCTCATTAG+GGG + chr7_2:86644244-86644263 None:intergenic 45.0%
GGCTTCAACCTACCTCATTA+GGG + chr7_2:86644245-86644264 None:intergenic 45.0%
TGGCTTCAACCTACCTCATT+AGG + chr7_2:86644246-86644265 None:intergenic 45.0%
AAACAGACCCCTAATGAGGT+AGG - chr7_2:86644234-86644253 Msa1085730:intron 45.0%
CTGAAGTAACGACCAAAGTC+GGG - chr7_2:86645216-86645235 Msa1085730:intron 45.0%
CAAGAATTGTGACCCGACTT+TGG + chr7_2:86645231-86645250 None:intergenic 45.0%
TGTACCATTTCCATAGCTGC+TGG + chr7_2:86645513-86645532 None:intergenic 45.0%
GCTGCAAGAATGTTACTGTC+AGG - chr7_2:86645546-86645565 Msa1085730:intron 45.0%
AGTCCATCAGCACTTGTCAT+TGG + chr7_2:86645573-86645592 None:intergenic 45.0%
AAGGAAGGATTGCTCTTGTG+AGG + chr7_2:86645611-86645630 None:intergenic 45.0%
ACTGGTTAGGGGGGTTATTA+GGG + chr7_2:86645722-86645741 None:intergenic 45.0%
AACTGGTTAGGGGGGTTATT+AGG + chr7_2:86645723-86645742 None:intergenic 45.0%
GAAATTGGAACTGGTTAGGG+GGG + chr7_2:86645731-86645750 None:intergenic 45.0%
GGAAATTGGAACTGGTTAGG+GGG + chr7_2:86645732-86645751 None:intergenic 45.0%
GGGAAATTGGAACTGGTTAG+GGG + chr7_2:86645733-86645752 None:intergenic 45.0%
! CCCTCAAAATTTTCTGCCTC+AGG - chr7_2:86645755-86645774 Msa1085730:CDS 45.0%
GCTAAAGCTGCAGTGAAGTT+AGG + chr7_2:86645906-86645925 None:intergenic 45.0%
!! AAATTTATAAAGTAAAAATA+TGG + chr7_2:86642623-86642642 None:intergenic 5.0%
!!! TATTTTTACTTTATAAATTT+TGG - chr7_2:86642623-86642642 Msa1085730:intron 5.0%
AGGCAGATGCAAGGTTGTGA+TGG + chr7_2:86642158-86642177 None:intergenic 50.0%
TAGAGGTAGAGGCAGATGCA+AGG + chr7_2:86642167-86642186 None:intergenic 50.0%
AGCCGAGCTTGAGAGAATGA+AGG - chr7_2:86642963-86642982 Msa1085730:intron 50.0%
CGAGCTTGAGAGAATGAAGG+TGG - chr7_2:86642966-86642985 Msa1085730:intron 50.0%
GGTGCAAGACAAGAAGGTAG+AGG - chr7_2:86643065-86643084 Msa1085730:intron 50.0%
GCAGCTAAAACTCGATCTGC+AGG + chr7_2:86643351-86643370 None:intergenic 50.0%
AACAAGCTGAGGCCACTATG+AGG - chr7_2:86643421-86643440 Msa1085730:intron 50.0%
AGGCCACTATGAGGAAAGCA+AGG - chr7_2:86643430-86643449 Msa1085730:intron 50.0%
GGCCACTATGAGGAAAGCAA+GGG - chr7_2:86643431-86643450 Msa1085730:intron 50.0%
TTCAGTTAGAGCTCGATCCG+AGG - chr7_2:86643455-86643474 Msa1085730:intron 50.0%
TATCGATGCACCATGGCCTT+AGG - chr7_2:86643647-86643666 Msa1085730:intron 50.0%
! CCCACCCATAAGCTCTTTTC+AGG + chr7_2:86644147-86644166 None:intergenic 50.0%
! CAAGAAGTACGACCCGACTT+TGG + chr7_2:86644291-86644310 None:intergenic 50.0%
!! ACATTAGGGGGTGCTTGTAG+CGG - chr7_2:86644539-86644558 Msa1085730:CDS 50.0%
ACCATTTCCATAGCTGCTGG+AGG + chr7_2:86645510-86645529 None:intergenic 50.0%
!! GGACCAATGACAAGTGCTGA+TGG - chr7_2:86645567-86645586 Msa1085730:intron 50.0%
TAGGGGGGTTATTAGGGAAC+TGG + chr7_2:86645716-86645735 None:intergenic 50.0%
GAGGGAAGGGAAATTGGAAC+TGG + chr7_2:86645740-86645759 None:intergenic 50.0%
ACTGTGTCAGCAAGGTTCTG+TGG + chr7_2:86645864-86645883 None:intergenic 50.0%
! TGAGGGAGGTGTAGAGGTAG+AGG + chr7_2:86642178-86642197 None:intergenic 55.0%
AGCTCGATCCGAGGCTAACA+TGG - chr7_2:86643464-86643483 Msa1085730:intron 55.0%
CACAGGACAACCTAAGGCCA+TGG + chr7_2:86643660-86643679 None:intergenic 55.0%
AGGATGCGAGGGTGACATCA+TGG + chr7_2:86645315-86645334 None:intergenic 55.0%
TGATGTCACCCTCGCATCCT+AGG - chr7_2:86645315-86645334 Msa1085730:intron 55.0%
ATGGTTCACGACGGTGACCT+AGG + chr7_2:86645335-86645354 None:intergenic 55.0%
TGCTTTGCCTCCAGCAGCTA+TGG - chr7_2:86645500-86645519 Msa1085730:intron 55.0%
GCCTCCAGCAGCTATGGAAA+TGG - chr7_2:86645506-86645525 Msa1085730:intron 55.0%
!! AGGGGGTGCTTGTAGCGGAT+AGG - chr7_2:86644544-86644563 Msa1085730:CDS 60.0%
GACGGTGACCTAGGATGCGA+GGG + chr7_2:86645326-86645345 None:intergenic 60.0%
GGAGAGTCCAAGCCCTCCAC+TGG + chr7_2:86641896-86641915 None:intergenic 65.0%
CGACGGTGACCTAGGATGCG+AGG + chr7_2:86645327-86645346 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 86641889 86646091 86641889 ID=Msa1085730;Name=Msa1085730
chr7_2 mRNA 86641889 86646091 86641889 ID=Msa1085730-mRNA-1;Parent=Msa1085730;Name=Msa1085730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.4|1|1|1|5|0|595
chr7_2 exon 86645708 86646091 86645708 ID=Msa1085730-mRNA-1:exon:23496;Parent=Msa1085730-mRNA-1
chr7_2 exon 86645135 86645233 86645135 ID=Msa1085730-mRNA-1:exon:23495;Parent=Msa1085730-mRNA-1
chr7_2 exon 86644495 86645031 86644495 ID=Msa1085730-mRNA-1:exon:23494;Parent=Msa1085730-mRNA-1
chr7_2 exon 86644292 86644405 86644292 ID=Msa1085730-mRNA-1:exon:23493;Parent=Msa1085730-mRNA-1
chr7_2 exon 86641889 86642542 86641889 ID=Msa1085730-mRNA-1:exon:23492;Parent=Msa1085730-mRNA-1
chr7_2 CDS 86645708 86646091 86645708 ID=Msa1085730-mRNA-1:cds;Parent=Msa1085730-mRNA-1
chr7_2 CDS 86645135 86645233 86645135 ID=Msa1085730-mRNA-1:cds;Parent=Msa1085730-mRNA-1
chr7_2 CDS 86644495 86645031 86644495 ID=Msa1085730-mRNA-1:cds;Parent=Msa1085730-mRNA-1
chr7_2 CDS 86644292 86644405 86644292 ID=Msa1085730-mRNA-1:cds;Parent=Msa1085730-mRNA-1
chr7_2 CDS 86641889 86642542 86641889 ID=Msa1085730-mRNA-1:cds;Parent=Msa1085730-mRNA-1
Gene Sequence

>Msa1085730

ATGGCCAGTGGAGGGCTTGGACTCTCCATTGATTCAGATCCAAATTCAAGCTTCTTATACCATAAGCAAATAGAATTCTCAACTCTTTTCCTCAACACAACAACCTCAAAAACTTCAAGTGGAAACTTATATAGTCACAAAATGGATACCACAAACAACAAAAACAAATCTCCATTTCAAGTCAACCATGAAATATCTCATCAACCCTTTGATCATGAAATGAGACCTATCATCAATGAACTAGACTTTTTCTCTCAAAACAACAACCATCACAACCTTGCATCTGCCTCTACCTCTACACCTCCCTCACTAAATCTTCATCATCATCATCATCATATACATGATCATTACACCGATCCTTCTCTCTTGGAATTCAAAGTCAACACTAGTTTGAATCTTCTTACGACCAACACAAGCAATGATCAATCCATGATGGAGGAAGACATAGCAAGTAATTCAGAAGACAAAAGAGCTAAGCTTGAGCTCGTTGTTCTTCAAGCCGAGCTTGAGAGAATGAAGGTGGAGAATCATCAACTGAGGAACATGCTTGATGAGGGTAATAGGAAGTACAACACATTGCAGATGCATTGGATGAGTATGGTGCAAGACAAGAAGGTAGAGGATTGTAATGAAGAGCAAAAGCAAGTGATTGGTGGAAAACTTGATGAGGAGAAACAAAATGGGAATGGTGGAGTTTTGGTTCCAAGACAATTTATGGAGCTTGGATTGGCTGCAAATAATTCTGATGCTATTGATGAACCAAGAAGTCAAGATCAGTCAAAATTACTTGCAAATAACAATGAGGAAGATTCCAAGGTTGAAGAACTTGTGTCTGATCATGAAAAGAAGGAATCCGATCGGGGAAAAGAAAGAAGCAGTAGTCCTGCAGATCGAGTTTTAGCTGCTAATAATACTAATAATAATGTTGCAAACTTTAGTCCTCAAACAAATGTTGAACAAGCTGAGGCCACTATGAGGAAAGCAAGGGTTTCAGTTAGAGCTCGATCCGAGGCTAACATGATCAATGATGGATGTCAATGGAGAAAGTATGGACAGAAGATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACCATGGCCTTAGGTTGTCCTGTGAGAAAACAGGTACAAAGGTGTGCTGAAGACAAAACAATACTTATCACAACATATGAAGGACATCACATTCATGCTTTGCCTCCAGCAGCTATGGAAATGGTACAAACAACATCATCAGCTGCAAGAATGTTACTGTCAGGACCAATGACAAGTGCTGATGGACTAATGAACCCAAATTACCTCACAAGAGCAATCCTTCCTTATTCTTCAAGCATAGCAACTATCTCAGCATCAGCTCCATTTCCAACTGTTACATTGGACCTAACTCAGTCACCAAACCAAAACCAGTTCCCTAATAACCCCCCTAACCAGTTCCAATTTCCCTTCCCTCAAAATTTTCTGCCTCAGGTATTTGGTCAGACATTGTTGAACCAATCAAAATTTTCAGGACTTCAAATGTCTCAAGATGCAGCAAACAGTTCTCAGCAGACACCACAGAACCTTGCTGACACAGTTAATGCTATTGCAGCTGATCCTAACTTCACTGCAGCTTTAGCAGCTGCTATTACTTCAATTATTGGGGCTGCACAGCCAAACAATAATAACGGTACTAGCAATAATGGTAACAGTACAATAGCTAACAACACTAATGGCAATGTTACATCAAGTAACAATACCATTGGAAGCCCTAAAATCAACAATCCCAATTCCTCAGTAGAGTAG
Protein sequence

>Msa1085730

MASGGLGLSIDSDPNSSFLYHKQIEFSTLFLNTTTSKTSSGNLYSHKMDTTNNKNKSPFQVNHEISHQPFDHEMRPIINELDFFSQNNNHHNLASASTSTPPSLNLHHHHHHIHDHYTDPSLLEFKVNTSLNLLTTNTSNDQSMMEEDIASNSEDKRAKLELVVLQAELERMKVENHQLRNMLDEGNRKYNTLQMHWMSMVQDKKVEDCNEEQKQVIGGKLDEEKQNGNGGVLVPRQFMELGLAANNSDAIDEPRSQDQSKLLANNNEEDSKVEELVSDHEKKESDRGKERSSSPADRVLAANNTNNNVANFSPQTNVEQAEATMRKARVSVRARSEANMINDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDKTILITTYEGHHIHALPPAAMEMVQTTSSAARMLLSGPMTSADGLMNPNYLTRAILPYSSSIATISASAPFPTVTLDLTQSPNQNQFPNNPPNQFQFPFPQNFLPQVFGQTLLNQSKFSGLQMSQDAANSSQQTPQNLADTVNAIAADPNFTAALAAAITSIIGAAQPNNNNGTSNNGNSTIANNTNGNVTSSNNTIGSPKINNPNSSVE*