AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1393310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393310 MtrunA17_Chr2g0322391 93.058 605 29 4 1 595 1 602 0.0 1040
Msa1393310 MtrunA17_Chr4g0075201 49.597 496 179 15 75 551 36 479 1.21e-122 371
Msa1393310 MtrunA17_Chr2g0288871 48.343 513 187 19 75 551 62 532 2.68e-118 362
Msa1393310 MtrunA17_Chr4g0025051 43.333 570 233 16 80 587 35 576 2.78e-112 347
Msa1393310 MtrunA17_Chr4g0025061 41.156 571 226 19 58 556 36 568 1.32e-110 344
Msa1393310 MtrunA17_Chr4g0024391 41.700 494 208 13 162 583 1 486 3.67e-97 305
Msa1393310 MtrunA17_Chr3g0099641 40.664 482 207 14 75 548 34 444 1.29e-95 300
Msa1393310 MtrunA17_Chr7g0270831 37.209 516 186 18 76 574 26 420 1.96e-77 252
Msa1393310 MtrunA17_Chr2g0302391 35.236 403 187 13 159 547 66 408 5.45e-53 187
Msa1393310 MtrunA17_Chr7g0216891 31.120 482 231 18 166 573 45 499 1.95e-46 172
Msa1393310 MtrunA17_Chr4g0051181 42.748 262 124 7 326 562 227 487 1.62e-42 159
Msa1393310 MtrunA17_Chr4g0060271 37.500 272 134 7 151 402 60 315 4.25e-40 154
Msa1393310 MtrunA17_Chr5g0419241 84.615 65 7 1 308 372 46 107 1.82e-31 117
Msa1393310 MtrunA17_Chr4g0001361 31.140 228 100 8 319 545 139 310 5.26e-26 108
Msa1393310 MtrunA17_Chr3g0101131 38.122 181 83 5 252 404 297 476 7.18e-25 109
Msa1393310 MtrunA17_Chr5g0445311 44.628 121 56 3 294 404 306 425 2.23e-24 107
Msa1393310 MtrunA17_Chr3g0106491 54.430 79 35 1 324 402 347 424 5.27e-24 105
Msa1393310 MtrunA17_Chr3g0106491 47.619 63 31 2 342 404 198 258 4.91e-11 65.5
Msa1393310 MtrunA17_Chr3g0079691 37.423 163 77 3 246 404 415 556 1.19e-23 105
Msa1393310 MtrunA17_Chr3g0079691 42.683 82 44 3 343 423 281 360 3.07e-12 69.7
Msa1393310 MtrunA17_Chr1g0150271 39.516 124 62 3 282 402 48 161 1.64e-23 100
Msa1393310 MtrunA17_Chr1g0150281 48.889 90 46 0 327 416 125 214 3.22e-23 100
Msa1393310 MtrunA17_Chr5g0447701 51.724 87 41 1 316 402 226 311 3.66e-23 102
Msa1393310 MtrunA17_Chr3g0136961 52.632 76 36 0 325 400 121 196 4.43e-23 99.8
Msa1393310 MtrunA17_Chr7g0218081 50.575 87 42 1 318 404 386 471 4.67e-23 103
Msa1393310 MtrunA17_Chr7g0218081 52.459 61 27 2 342 402 228 286 1.85e-12 70.1
Msa1393310 MtrunA17_Chr4g0004911 53.165 79 36 1 324 402 318 395 1.11e-22 101
Msa1393310 MtrunA17_Chr4g0004911 40.000 75 42 2 328 402 172 243 1.04e-11 67.4
Msa1393310 MtrunA17_Chr7g0243891 53.571 84 38 1 321 404 353 435 1.42e-22 101
Msa1393310 MtrunA17_Chr5g0432161 52.381 84 39 1 321 404 400 482 1.45e-22 102
Msa1393310 MtrunA17_Chr5g0432161 35.714 112 60 4 291 402 203 302 4.58e-11 65.9
Msa1393310 MtrunA17_Chr4g0068541 51.948 77 36 1 326 402 192 267 2.04e-22 100
Msa1393310 MtrunA17_Chr7g0270191 46.739 92 42 2 326 417 129 213 6.32e-22 96.7
Msa1393310 MtrunA17_Chr5g0418191 50.617 81 39 1 324 404 302 381 7.71e-22 98.6
Msa1393310 MtrunA17_Chr5g0418191 49.180 61 29 2 342 402 151 209 1.22e-11 67.0
Msa1393310 MtrunA17_Chr5g0418781 47.126 87 45 1 313 399 95 180 1.92e-21 94.7
Msa1393310 MtrunA17_Chr7g0249311 51.250 80 38 1 325 404 375 453 3.37e-21 98.2
Msa1393310 MtrunA17_Chr7g0249311 47.692 65 32 2 338 402 175 237 7.66e-11 65.1
Msa1393310 MtrunA17_Chr2g0294231 49.351 77 38 1 326 402 187 262 3.54e-21 95.9
Msa1393310 MtrunA17_Chr4g0042831 49.383 81 40 1 324 404 260 339 3.98e-21 95.9
Msa1393310 MtrunA17_Chr4g0042831 40.741 81 45 2 342 422 145 222 3.06e-11 65.5
Msa1393310 MtrunA17_Chr7g0249301 50.617 81 39 1 324 404 274 353 4.71e-21 95.5
Msa1393310 MtrunA17_Chr7g0249301 47.692 65 32 2 338 402 58 120 4.06e-11 65.1
Msa1393310 MtrunA17_Chr1g0150801 50.685 73 35 1 327 399 87 158 7.89e-21 89.7
Msa1393310 MtrunA17_Chr7g0224801 50.704 71 34 1 331 401 82 151 2.21e-20 88.6
Msa1393310 MtrunA17_Chr1g0194481 40.000 115 65 2 326 437 142 255 3.09e-20 92.0
Msa1393310 MtrunA17_Chr2g0333851 30.085 236 87 9 320 545 142 309 3.15e-20 92.0
Msa1393310 MtrunA17_Chr4g0051881 51.351 74 35 1 329 402 165 237 6.05e-20 91.7
Msa1393310 MtrunA17_Chr1g0147881 47.561 82 43 0 326 407 246 327 9.97e-20 90.9
Msa1393310 MtrunA17_Chr3g0129361 46.067 89 46 2 325 413 127 213 1.26e-19 88.2
Msa1393310 MtrunA17_Chr8g0383351 45.556 90 46 3 325 413 142 229 7.88e-19 85.9
Msa1393310 MtrunA17_Chr7g0263531 43.529 85 47 1 318 402 337 420 1.34e-18 88.6
Msa1393310 MtrunA17_Chr7g0263531 50.000 60 28 2 343 402 190 247 1.69e-11 66.6
Msa1393310 MtrunA17_Chr8g0379461 54.930 71 31 1 333 402 66 136 1.45e-18 85.5
Msa1393310 MtrunA17_Chr4g0074001 50.649 77 37 1 326 402 343 418 1.79e-18 89.0
Msa1393310 MtrunA17_Chr8g0386241 40.659 91 53 1 315 405 76 165 2.17e-18 83.2
Msa1393310 MtrunA17_Chr5g0443131 48.649 74 37 1 329 402 144 216 2.20e-18 86.3
Msa1393310 MtrunA17_Chr8g0335811 44.444 81 44 1 320 400 132 211 4.22e-18 83.6
Msa1393310 MtrunA17_Chr1g0184691 47.436 78 41 0 326 403 277 354 4.87e-18 86.3
Msa1393310 MtrunA17_Chr8g0383251 44.595 74 40 1 329 402 95 167 5.13e-18 82.4
Msa1393310 MtrunA17_Chr4g0053281 46.835 79 42 0 326 404 250 328 6.75e-18 85.5
Msa1393310 MtrunA17_Chr5g0401821 47.368 76 40 0 326 401 183 258 1.15e-17 83.6
Msa1393310 MtrunA17_Chr7g0270051 38.384 99 55 1 312 404 17 115 1.38e-17 83.2
Msa1393310 MtrunA17_Chr2g0284321 54.839 62 28 0 342 403 35 96 1.52e-17 82.0
Msa1393310 MtrunA17_Chr2g0319961 51.429 70 34 0 333 402 71 140 1.78e-17 82.8
Msa1393310 MtrunA17_Chr4g0071521 48.000 75 39 0 326 400 229 303 2.15e-17 83.6
Msa1393310 MtrunA17_Chr3g0129321 45.946 74 39 1 329 402 105 177 8.19e-17 79.3
Msa1393310 MtrunA17_Chr7g0228941 47.887 71 37 0 329 399 39 109 1.07e-16 76.6
Msa1393310 MtrunA17_Chr2g0289181 44.156 77 43 0 337 413 9 85 1.28e-16 79.7
Msa1393310 MtrunA17_Chr1g0188941 44.156 77 42 1 326 402 35 110 1.42e-16 75.9
Msa1393310 MtrunA17_Chr7g0248721 45.000 80 42 2 320 399 119 196 2.68e-16 78.2
Msa1393310 MtrunA17_Chr3g0139021 45.946 74 40 0 326 399 298 371 4.23e-16 80.9
Msa1393310 MtrunA17_Chr7g0238921 35.484 155 89 5 258 403 32 184 1.30e-15 78.2
Msa1393310 MtrunA17_Chr6g0485431 36.774 155 79 6 266 402 61 214 3.17e-15 77.8
Msa1393310 MtrunA17_Chr2g0293481 45.833 72 39 0 343 414 268 339 4.96e-15 77.8
Msa1393310 MtrunA17_Chr8g0348311 50.000 64 32 0 339 402 152 215 6.12e-15 76.6
Msa1393310 MtrunA17_Chr7g0248691 42.683 82 35 1 333 402 133 214 1.87e-14 74.7
Msa1393310 MtrunA17_Chr1g0202461 40.659 91 52 1 339 429 258 346 4.72e-14 74.3
Msa1393310 MtrunA17_Chr1g0189391 42.466 73 40 2 329 400 84 155 1.23e-13 72.4
Msa1393310 MtrunA17_Chr3g0126391 48.684 76 32 2 329 397 115 190 1.67e-13 72.0
Msa1393310 MtrunA17_Chr8g0387501 45.161 62 34 0 341 402 128 189 1.21e-12 68.6
Msa1393310 MtrunA17_Chr7g0244971 34.579 107 67 2 318 421 98 204 1.73e-12 68.6
Msa1393310 MtrunA17_Chr7g0244981 36.449 107 65 2 318 421 97 203 3.68e-12 67.4
Msa1393310 MtrunA17_Chr8g0347251 36.036 111 56 3 302 397 83 193 3.84e-12 68.2
Msa1393310 MtrunA17_Chr4g0024401 41.964 112 43 5 58 165 28 121 1.56e-11 62.0
Msa1393310 MtrunA17_Chr2g0315361 40.541 74 42 1 326 397 132 205 3.29e-11 64.7
Msa1393310 MtrunA17_Chr5g0447711 36.782 87 54 1 316 402 204 289 3.43e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393310 AT1G62300.1 49.455 459 184 10 127 564 121 552 1.73e-120 368
Msa1393310 AT4G04450.1 44.643 504 239 14 68 548 17 503 2.05e-109 338
Msa1393310 AT4G04450.2 48.210 419 193 10 144 548 1 409 2.68e-101 314
Msa1393310 AT4G22070.4 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1393310 AT4G22070.3 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1393310 AT4G22070.2 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1393310 AT4G22070.1 45.279 519 219 14 69 548 22 514 1.64e-100 316
Msa1393310 AT4G01720.1 40.580 414 171 13 150 545 87 443 4.62e-66 224
Msa1393310 AT5G15130.1 32.809 445 230 16 161 550 35 465 5.29e-50 182
Msa1393310 AT5G15130.2 32.494 437 226 16 169 550 1 423 3.62e-48 176
Msa1393310 AT1G68150.1 38.849 278 113 9 165 435 97 324 1.73e-45 165
Msa1393310 AT1G18860.1 37.748 302 122 6 325 561 222 522 9.82e-42 158
Msa1393310 AT1G69810.1 33.739 329 187 9 161 477 25 334 3.80e-38 145
Msa1393310 AT1G69810.2 45.604 182 92 4 298 477 100 276 1.55e-36 139
Msa1393310 AT2G38470.1 44.628 121 65 2 324 444 344 462 1.87e-25 110
Msa1393310 AT2G38470.1 45.205 73 37 3 330 402 173 242 8.10e-11 65.1
Msa1393310 AT1G80840.1 30.603 232 98 7 319 545 118 291 4.05e-24 103
Msa1393310 AT4G26640.5 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1393310 AT4G26640.6 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1393310 AT4G26640.4 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1393310 AT4G26640.3 55.128 78 34 1 325 402 188 264 6.15e-24 104
Msa1393310 AT4G26640.7 55.128 78 34 1 325 402 324 400 1.29e-23 105
Msa1393310 AT4G26640.1 55.128 78 34 1 325 402 292 368 1.51e-23 104
Msa1393310 AT4G26640.2 55.128 78 34 1 325 402 364 440 1.99e-23 104
Msa1393310 AT5G07100.2 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1393310 AT5G07100.4 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1393310 AT5G07100.5 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1393310 AT5G07100.3 41.880 117 61 3 290 402 87 200 1.05e-22 97.1
Msa1393310 AT2G04880.2 47.674 86 44 1 321 406 262 346 1.53e-22 101
Msa1393310 AT2G04880.2 33.103 145 84 5 330 466 92 231 7.55e-11 65.1
Msa1393310 AT1G13960.1 53.165 79 36 1 324 402 391 468 2.00e-22 101
Msa1393310 AT1G13960.1 49.180 61 29 2 342 402 229 287 6.48e-12 68.6
Msa1393310 AT5G07100.1 40.625 128 66 4 279 402 172 293 2.06e-22 98.6
Msa1393310 AT1G13960.2 53.165 79 36 1 324 402 238 315 2.14e-22 99.8
Msa1393310 AT1G13960.2 49.180 61 29 2 342 402 76 134 1.20e-11 67.0
Msa1393310 AT2G04880.1 47.674 86 44 1 321 406 286 370 2.22e-22 101
Msa1393310 AT4G31800.2 58.462 65 27 0 341 405 110 174 5.42e-22 95.9
Msa1393310 AT5G56270.1 53.750 80 36 1 325 404 470 548 6.07e-22 100
Msa1393310 AT4G31800.1 58.462 65 27 0 341 405 175 239 6.37e-22 97.4
Msa1393310 AT1G29860.1 41.964 112 58 2 326 431 120 230 6.42e-22 96.7
Msa1393310 AT5G49520.1 49.351 77 38 1 326 402 205 280 7.50e-22 98.6
Msa1393310 AT5G26170.1 50.685 73 35 1 328 400 99 170 8.08e-22 93.2
Msa1393310 AT2G25000.2 42.708 96 55 0 311 406 72 167 1.02e-21 94.7
Msa1393310 AT2G25000.4 42.708 96 55 0 311 406 72 167 1.02e-21 94.7
Msa1393310 AT2G25000.3 42.708 96 55 0 311 406 94 189 1.09e-21 95.1
Msa1393310 AT2G25000.1 42.708 96 55 0 311 406 115 210 1.83e-21 95.1
Msa1393310 AT2G03340.1 48.276 87 44 1 318 404 391 476 2.67e-21 98.2
Msa1393310 AT1G69310.4 42.157 102 55 2 301 399 103 203 6.86e-21 93.6
Msa1393310 AT1G69310.2 42.157 102 55 2 301 399 103 203 6.86e-21 93.6
Msa1393310 AT1G69310.1 42.157 102 55 2 301 399 103 203 6.86e-21 93.6
Msa1393310 AT4G18170.1 51.948 77 36 1 326 402 156 231 8.71e-21 94.0
Msa1393310 AT3G01080.1 46.512 86 45 1 317 402 281 365 3.01e-20 94.0
Msa1393310 AT3G01080.2 46.512 86 45 1 317 402 319 403 3.02e-20 94.4
Msa1393310 AT2G47260.1 50.649 77 37 1 326 402 158 233 3.44e-20 92.8
Msa1393310 AT2G30250.1 50.000 80 39 1 325 404 311 389 4.13e-20 93.2
Msa1393310 AT4G26440.1 50.633 79 38 1 326 404 356 433 8.77e-20 93.6
Msa1393310 AT4G26440.1 50.000 62 29 2 342 403 178 237 3.89e-12 69.7
Msa1393310 AT3G01970.1 51.351 74 35 1 328 401 51 123 8.95e-20 86.7
Msa1393310 AT1G64000.1 41.346 104 56 2 316 419 88 186 2.17e-19 87.0
Msa1393310 AT5G46350.1 50.000 74 36 1 329 402 170 242 2.23e-19 90.1
Msa1393310 AT5G41570.1 50.000 82 39 2 319 399 74 154 2.87e-19 86.3
Msa1393310 AT4G39410.1 44.444 81 44 1 320 400 201 280 3.25e-19 89.0
Msa1393310 AT1G55600.1 43.820 89 49 1 316 404 281 368 7.99e-19 90.1
Msa1393310 AT5G13080.1 50.685 73 35 1 329 401 54 125 9.94e-19 83.6
Msa1393310 AT4G30935.1 50.649 77 37 1 326 402 315 390 2.15e-18 88.6
Msa1393310 AT2G46130.1 48.718 78 39 1 322 399 10 86 3.13e-18 80.9
Msa1393310 AT4G24240.1 50.000 76 38 0 326 401 265 340 3.87e-18 86.7
Msa1393310 AT2G23320.1 57.627 59 25 0 343 401 241 299 4.76e-18 85.9
Msa1393310 AT3G62340.1 50.000 78 38 1 329 406 105 181 7.11e-18 84.7
Msa1393310 AT2G30590.1 48.352 91 40 3 323 406 288 378 7.90e-18 86.3
Msa1393310 AT5G28650.1 49.383 81 35 2 326 400 240 320 8.54e-18 85.5
Msa1393310 AT2G44745.1 46.667 75 39 1 325 399 128 201 8.86e-18 83.2
Msa1393310 AT5G64810.1 47.887 71 36 1 329 399 97 166 9.97e-18 82.0
Msa1393310 AT2G24570.1 50.000 74 37 0 326 399 227 300 1.02e-17 85.1
Msa1393310 AT4G31550.2 48.649 74 38 0 326 399 229 302 2.15e-17 84.0
Msa1393310 AT4G31550.1 48.649 74 38 0 326 399 230 303 2.20e-17 84.0
Msa1393310 AT1G29280.1 47.143 70 37 0 333 402 65 134 3.78e-17 82.0
Msa1393310 AT3G04670.1 48.148 81 36 2 326 400 240 320 4.68e-17 83.2
Msa1393310 AT3G58710.1 43.820 89 49 1 315 402 43 131 3.65e-16 79.3
Msa1393310 AT3G58710.2 43.820 89 49 1 315 402 42 130 3.73e-16 79.3
Msa1393310 AT2G37260.3 49.333 75 34 2 337 408 264 337 4.94e-16 80.5
Msa1393310 AT2G37260.3 48.438 64 31 2 343 406 86 147 7.12e-13 70.9
Msa1393310 AT2G37260.2 49.333 75 34 2 337 408 262 335 5.12e-16 80.1
Msa1393310 AT2G37260.2 48.438 64 31 2 343 406 84 145 7.54e-13 70.5
Msa1393310 AT1G69310.3 39.216 102 54 3 301 399 103 199 5.37e-16 79.3
Msa1393310 AT2G37260.1 49.333 75 34 2 337 408 344 417 9.57e-16 80.1
Msa1393310 AT2G37260.1 48.438 64 31 2 343 406 166 227 1.06e-12 70.9
Msa1393310 AT4G01250.1 37.143 105 53 1 342 433 128 232 1.23e-15 78.6
Msa1393310 AT5G52830.1 50.746 67 33 0 336 402 159 225 1.47e-15 79.0
Msa1393310 AT4G23550.1 48.485 66 34 0 337 402 135 200 2.17e-15 77.8
Msa1393310 AT2G34830.1 44.737 76 41 1 328 402 200 275 4.18e-15 78.2
Msa1393310 AT1G30650.1 44.737 76 41 1 328 402 202 277 4.64e-15 78.2
Msa1393310 AT2G34830.2 44.737 76 41 1 328 402 209 284 5.47e-15 77.8
Msa1393310 AT2G46130.2 42.391 92 44 4 322 413 10 92 1.09e-14 70.9
Msa1393310 AT5G43290.1 43.421 76 41 2 329 403 100 174 2.66e-14 73.9
Msa1393310 AT4G31800.3 61.538 39 15 0 341 379 175 213 2.72e-12 67.4
Msa1393310 AT2G46400.1 41.772 79 44 1 321 397 83 161 8.10e-12 67.0
Msa1393310 AT2G21900.1 40.909 66 38 1 337 402 104 168 1.32e-11 64.7
Msa1393310 AT5G45050.2 47.541 61 32 0 342 402 1152 1212 1.92e-11 67.8
Msa1393310 AT5G45050.4 47.541 61 32 0 342 402 1041 1101 1.92e-11 67.8
Msa1393310 AT5G45050.1 47.541 61 32 0 342 402 1180 1240 1.98e-11 67.8

Find 120 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTCCAAGACAATTTA+TGG 0.128951 tig0021657:-47588 Msa1393310:CDS
ATTGCTCTTGTGAGGTAATT+TGG 0.146915 tig0021657:+45149 None:intergenic
TTTGACTGATCTTGACTTCT+TGG 0.186141 tig0021657:+47524 None:intergenic
GGTTATTAGGGAACTGGTTT+TGG 0.212904 tig0021657:+45042 None:intergenic
CTGCTATTACTTCAATTATT+GGG 0.212910 tig0021657:-44821 Msa1393310:CDS
GCTGCTATTACTTCAATTAT+TGG 0.246668 tig0021657:-44822 Msa1393310:CDS
TGGTATAAGAAGCTTGAATT+TGG 0.269953 tig0021657:+48817 None:intergenic
CTTGATGAGGAGAAACAAAA+TGG 0.281238 tig0021657:-47623 Msa1393310:CDS
TTGAGAATTCTATTTGCTTA+TGG 0.285405 tig0021657:+48797 None:intergenic
AAATGGGAATGGTGGAGTTT+TGG 0.297182 tig0021657:-47606 Msa1393310:CDS
TAGCTACTCTACTGAGGAAT+TGG 0.308792 tig0021657:+44677 None:intergenic
TTGCTCTTGTGAGGTAATTT+GGG 0.310844 tig0021657:+45150 None:intergenic
CTAGTACCGTTATTATTGTT+TGG 0.316751 tig0021657:+44789 None:intergenic
TTTGGTTTGGTGACTGAGTT+AGG 0.325584 tig0021657:+45060 None:intergenic
AGGGAAATTGGAACTGGTTA+GGG 0.327267 tig0021657:+45018 None:intergenic
ACATGCTTGATGAGGGTAAT+AGG 0.328005 tig0021657:-47742 Msa1393310:CDS
ATTTCATGGTTGACTTGAAA+TGG 0.347073 tig0021657:+48685 None:intergenic
GTTGCTATGCTTGAAGAATA+AGG 0.353526 tig0021657:+45122 None:intergenic
AATAACGGTACTAGCAATAA+TGG 0.353919 tig0021657:-44780 Msa1393310:CDS
GGGAAATTGGAACTGGTTAG+GGG 0.369219 tig0021657:+45019 None:intergenic
AAACTTATATAGTCACAAAA+TGG 0.380131 tig0021657:-48734 Msa1393310:CDS
GCTAAAGCTGCAGTGAAGTT+AGG 0.387680 tig0021657:+44846 None:intergenic
AGGGTTGATGAGATATTTCA+TGG 0.388556 tig0021657:+48671 None:intergenic
CCAAGACAATTTATGGAGCT+TGG 0.403211 tig0021657:-47581 Msa1393310:CDS
AAGGGAAATTGGAACTGGTT+AGG 0.406882 tig0021657:+45017 None:intergenic
TTTATGGCCAGTGGAGGGCT+TGG 0.407903 tig0021657:-48859 Msa1393310:CDS
GGATGTCAATGGAGAAAGTA+TGG 0.409848 tig0021657:-47165 Msa1393310:CDS
TTACACCGATCCTTCTCTCT+TGG 0.412872 tig0021657:-48509 Msa1393310:CDS
TGCTATGTCTTCCTCCATCA+TGG 0.419633 tig0021657:+47959 None:intergenic
TATCGATGCACCATGGCCTT+AGG 0.425405 tig0021657:-47102 Msa1393310:CDS
GAAATTGGAACTGGTTAGGG+GGG 0.429542 tig0021657:+45021 None:intergenic
GAGGGAAGGGAAATTGGAAC+TGG 0.429543 tig0021657:+45012 None:intergenic
TGTACCATTTCCATAGCTGC+TGG 0.431979 tig0021657:+45239 None:intergenic
TGCTTTGCCTCCAGCAGCTA+TGG 0.435611 tig0021657:-45249 Msa1393310:CDS
GCTTGTTCAACATTTGTTTG+AGG 0.439934 tig0021657:+47344 None:intergenic
AGTCCATCAGCACTTGTCAT+TGG 0.447523 tig0021657:+45179 None:intergenic
TCCAATGTAACAGTTGGAAA+TGG 0.451153 tig0021657:+45083 None:intergenic
AGACACAAGTTCTTCAACCT+TGG 0.451540 tig0021657:+47472 None:intergenic
CGATAATAAGCTCGAGGACA+CGG 0.453138 tig0021657:+47120 None:intergenic
ACAATAGCTAACAACACTAA+TGG 0.455086 tig0021657:-44750 Msa1393310:CDS
TCCATTTCCAACTGTTACAT+TGG 0.455513 tig0021657:-45084 Msa1393310:CDS
GCCTCCAGCAGCTATGGAAA+TGG 0.457149 tig0021657:-45243 Msa1393310:CDS
ACAATTTATGGAGCTTGGAT+TGG 0.459747 tig0021657:-47576 Msa1393310:CDS
TGAGGGAGGTGTAGAGGTAG+AGG 0.463067 tig0021657:+48570 None:intergenic
TGAATTTGGATCTGAATCAA+TGG 0.468905 tig0021657:+48831 None:intergenic
GGAAATTGGAACTGGTTAGG+GGG 0.470023 tig0021657:+45020 None:intergenic
CACCTTCATTCTCTCAAGCT+CGG 0.471926 tig0021657:+47784 None:intergenic
CCAAGCTCCATAAATTGTCT+TGG 0.475471 tig0021657:+47581 None:intergenic
GAAGAGCAAAAGCAAGTGAT+TGG 0.479656 tig0021657:-47653 Msa1393310:CDS
AACCCTTGCTTTCCTCATAG+TGG 0.482051 tig0021657:+47316 None:intergenic
GCAGATGCATTGGATGAGTA+TGG 0.482506 tig0021657:-47705 Msa1393310:CDS
TGAAAAGAAGGAATCCGATC+GGG 0.482638 tig0021657:-47444 Msa1393310:CDS
AGCTACTCTACTGAGGAATT+GGG 0.491290 tig0021657:+44678 None:intergenic
ATTTAGTGAGGGAGGTGTAG+AGG 0.493533 tig0021657:+48564 None:intergenic
TGCTATTACTTCAATTATTG+GGG 0.494301 tig0021657:-44820 Msa1393310:CDS
AGGTCTCATTTCATGATCAA+AGG 0.497698 tig0021657:+48651 None:intergenic
AAGTCTAGTTCATTGATGAT+AGG 0.502804 tig0021657:+48631 None:intergenic
TGTGTCTGATCATGAAAAGA+AGG 0.508518 tig0021657:-47456 Msa1393310:CDS
GGAGAGTCCAAGCCCTCCAC+TGG 0.521274 tig0021657:+48852 None:intergenic
GGTCTCATTTCATGATCAAA+GGG 0.522587 tig0021657:+48652 None:intergenic
GCAGCTAAAACTCGATCTGC+AGG 0.523186 tig0021657:+47401 None:intergenic
AGGTTGTCCTGTGAGAAAAC+AGG 0.526028 tig0021657:-47082 Msa1393310:intron
AGCTCGATCCGAGGCTAACA+TGG 0.526714 tig0021657:-47285 Msa1393310:intron
ATACTTATCACAACATATGA+AGG 0.527047 tig0021657:-45284 Msa1393310:CDS
GATAATAAGCTCGAGGACAC+GGG 0.530098 tig0021657:+47121 None:intergenic
TTGAAATTTATGGCCAGTGG+AGG 0.532791 tig0021657:-48865 None:intergenic
GGATTGATCATTGCTTGTGT+TGG 0.535532 tig0021657:+47980 None:intergenic
ACAACACATTGCAGATGCAT+TGG 0.536029 tig0021657:-47715 Msa1393310:CDS
CATAATTTGCACAGGTACAA+AGG 0.536458 tig0021657:-45325 Msa1393310:intron
ACTTTGAATTCCAAGAGAGA+AGG 0.536469 tig0021657:+48499 None:intergenic
GAGAAAGTATGGACAGAAGA+TGG 0.537071 tig0021657:-47154 Msa1393310:CDS
GGACCAATGACAAGTGCTGA+TGG 0.540715 tig0021657:-45182 Msa1393310:CDS
GCTGCAAGAATGTTACTGTC+AGG 0.544674 tig0021657:-45203 Msa1393310:CDS
TTGATGAGGAGAAACAAAAT+GGG 0.547963 tig0021657:-47622 Msa1393310:CDS
GAGAAACAAAATGGGAATGG+TGG 0.550957 tig0021657:-47614 Msa1393310:CDS
AGATCAATGATGGATGTCAA+TGG 0.557548 tig0021657:-47176 Msa1393310:CDS
TCATTGAAATTTATGGCCAG+TGG 0.559553 tig0021657:-48868 None:intergenic
CTGAGGAACATGCTTGATGA+GGG 0.560805 tig0021657:-47749 Msa1393310:CDS
GAGTATGGTGCAAGACAAGA+AGG 0.561536 tig0021657:-47690 Msa1393310:CDS
GAGCAAAAGCAAGTGATTGG+TGG 0.565607 tig0021657:-47650 Msa1393310:CDS
GTTAGGTCCAATGTAACAGT+TGG 0.567146 tig0021657:+45077 None:intergenic
ATGAAAAGAAGGAATCCGAT+CGG 0.570044 tig0021657:-47445 Msa1393310:CDS
AGGCCACTATGAGGAAAGCA+AGG 0.570684 tig0021657:-47319 Msa1393310:CDS
ACATCAAGTAACAATACCAT+TGG 0.571515 tig0021657:-44720 Msa1393310:CDS
TAACAATGAGGAAGATTCCA+AGG 0.572334 tig0021657:-47489 Msa1393310:CDS
TGAAATTTATGGCCAGTGGA+GGG 0.583495 tig0021657:-48864 None:intergenic
GCACAGCCAAACAATAATAA+CGG 0.583839 tig0021657:-44795 Msa1393310:CDS
CACAGGACAACCTAAGGCCA+TGG 0.587201 tig0021657:+47092 None:intergenic
AAGCAATGATCAATCCATGA+TGG 0.591359 tig0021657:-47973 Msa1393310:CDS
CTATGCTTGAAGAATAAGGA+AGG 0.594569 tig0021657:+45126 None:intergenic
GGTGCAAGACAAGAAGGTAG+AGG 0.597094 tig0021657:-47684 Msa1393310:CDS
GAATTCCAAGAGAGAAGGAT+CGG 0.597121 tig0021657:+48504 None:intergenic
GAAGTGTACCATGTTAGCCT+CGG 0.600264 tig0021657:+47277 None:intergenic
AGGCAGATGCAAGGTTGTGA+TGG 0.603220 tig0021657:+48590 None:intergenic
AACAAGCTGAGGCCACTATG+AGG 0.607043 tig0021657:-47328 Msa1393310:CDS
ATGATGATGAAGATTTAGTG+AGG 0.611103 tig0021657:+48552 None:intergenic
ACTGAGGAACATGCTTGATG+AGG 0.611969 tig0021657:-47750 Msa1393310:CDS
AGCCGAGCTTGAGAGAATGA+AGG 0.613065 tig0021657:-47786 Msa1393310:CDS
AACAAATGTTGAACAAGCTG+AGG 0.613373 tig0021657:-47339 Msa1393310:CDS
AAGGAAGGATTGCTCTTGTG+AGG 0.621106 tig0021657:+45141 None:intergenic
TAGCATTAACTGTGTCAGCA+AGG 0.623284 tig0021657:+44880 None:intergenic
TAGAGGTAGAGGCAGATGCA+AGG 0.626052 tig0021657:+48581 None:intergenic
TGATGAAGATTTAGTGAGGG+AGG 0.630220 tig0021657:+48556 None:intergenic
CGAGCTTGAGAGAATGAAGG+TGG 0.635577 tig0021657:-47783 Msa1393310:CDS
TGATGATGAAGATTTAGTGA+GGG 0.636759 tig0021657:+48553 None:intergenic
ACCATTTCCATAGCTGCTGG+AGG 0.637423 tig0021657:+45242 None:intergenic
GAGGAGAAACAAAATGGGAA+TGG 0.637776 tig0021657:-47617 Msa1393310:CDS
TATGGACAGAAGATGGCGAA+AGG 0.642826 tig0021657:-47147 Msa1393310:CDS
CAATGATCAATCCATGATGG+AGG 0.645307 tig0021657:-47970 Msa1393310:CDS
AGACAAAAGAGCTAAGCTTG+AGG 0.649723 tig0021657:-47925 Msa1393310:intron
TTCAGTTAGAGCTCGATCCG+AGG 0.654330 tig0021657:-47294 Msa1393310:CDS
GGCCACTATGAGGAAAGCAA+GGG 0.654709 tig0021657:-47318 Msa1393310:CDS
ATTACTTGCAAATAACAATG+AGG 0.658433 tig0021657:-47501 Msa1393310:CDS
AGCTTATTATCGATGCACCA+TGG 0.661870 tig0021657:-47109 Msa1393310:CDS
GAAAAGAAGGAATCCGATCG+GGG 0.662543 tig0021657:-47443 Msa1393310:CDS
ACTGTGTCAGCAAGGTTCTG+TGG 0.667152 tig0021657:+44888 None:intergenic
GATTGGTGGAAAACTTGATG+AGG 0.667331 tig0021657:-47636 Msa1393310:CDS
GTGCATCGATAATAAGCTCG+AGG 0.678750 tig0021657:+47114 None:intergenic
AGGTGGAGAATCATCAACTG+AGG 0.706865 tig0021657:-47766 Msa1393310:CDS
AATGTCTGACCAAATACCTG+AGG 0.730527 tig0021657:+44978 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAGTGATATTATATATA+TGG + tig0021657:45253-45272 None:intergenic 10.0%
!! TTTCAAAAAAAAAATGAAAT+TGG + tig0021657:47507-47526 None:intergenic 10.0%
!! ACTATTAGAAAACATTAAAT+TGG - tig0021657:45266-45285 Msa1393310:CDS 15.0%
!!! ATTTTCTCATTACTAAATTT+TGG - tig0021657:45350-45369 Msa1393310:intron 15.0%
!!! TAATTTCTATAAACTTTTTC+AGG + tig0021657:46911-46930 None:intergenic 15.0%
!! AATAAAGACAAAAGATAATT+TGG - tig0021657:47303-47322 Msa1393310:CDS 15.0%
!! CATCTTAAAAATAAAAATGA+CGG + tig0021657:47480-47499 None:intergenic 15.0%
!!! GTCATTTTTATTTTTAAGAT+GGG - tig0021657:47479-47498 Msa1393310:CDS 15.0%
!!! ACTTTTTTTTGTAAACATTT+TGG - tig0021657:47743-47762 Msa1393310:CDS 15.0%
!!! TAATTTCAGTAAACTTTTTT+AGG + tig0021657:47852-47871 None:intergenic 15.0%
!! AAACTTATATAGTCACAAAA+TGG - tig0021657:44802-44821 Msa1393310:CDS 20.0%
!! ATTGCAATATCAATAACATA+TGG + tig0021657:45143-45162 None:intergenic 20.0%
!! TATATATATGGAATACCAAA+GGG + tig0021657:45241-45260 None:intergenic 20.0%
!! TTATATATATGGAATACCAA+AGG + tig0021657:45242-45261 None:intergenic 20.0%
!!! AACAAATTTTCCCATAAAAA+AGG - tig0021657:45300-45319 Msa1393310:CDS 20.0%
!!! ACAAATTTTCCCATAAAAAA+GGG - tig0021657:45301-45320 Msa1393310:CDS 20.0%
!!! TTTTTACTTCCCTTTTTTAT+GGG + tig0021657:45313-45332 None:intergenic 20.0%
!!! TTTTTTACTTCCCTTTTTTA+TGG + tig0021657:45314-45333 None:intergenic 20.0%
!!! TATTTAATTTGTTTGGTGAA+TGG - tig0021657:45377-45396 Msa1393310:intron 20.0%
!! TAAATGTTAGCTATAATAGT+TGG - tig0021657:46491-46510 Msa1393310:intron 20.0%
!!! CTGTTTTATATTGACTTATT+TGG + tig0021657:47007-47026 None:intergenic 20.0%
!!! GTTACTGTAGTTTAATATTT+TGG + tig0021657:47053-47072 None:intergenic 20.0%
!!! TTATATCTTCCATTTTATTC+TGG + tig0021657:47125-47144 None:intergenic 20.0%
!! TGTTTATATTGTCATTAAAC+TGG - tig0021657:47169-47188 Msa1393310:CDS 20.0%
!! AAAAGATAATTTGGACATTA+GGG - tig0021657:47312-47331 Msa1393310:CDS 20.0%
!!! CGTCATTTTTATTTTTAAGA+TGG - tig0021657:47478-47497 Msa1393310:CDS 20.0%
!!! TAACTTTTTATTTAGAGCTT+AGG - tig0021657:47531-47550 Msa1393310:CDS 20.0%
!! TATACAAACACGTTTAAAAA+AGG + tig0021657:47643-47662 None:intergenic 20.0%
!! TTTAAACGTGTTTGTATAAA+TGG - tig0021657:47645-47664 Msa1393310:CDS 20.0%
!!! TTTTTTTGTAAACATTTTGG+TGG - tig0021657:47746-47765 Msa1393310:CDS 20.0%
!!! TAATTCGGGTTTTATAAAAA+TGG + tig0021657:48141-48160 None:intergenic 20.0%
! TTGAGAATTCTATTTGCTTA+TGG + tig0021657:44742-44761 None:intergenic 25.0%
!!! AGATTTGTTTTTGTTGTTTG+TGG + tig0021657:44831-44850 None:intergenic 25.0%
!!! TGGTTGCTATTTAATTTGTT+TGG - tig0021657:45370-45389 Msa1393310:intron 25.0%
! GCACATATTATATATGACAT+TGG - tig0021657:45476-45495 Msa1393310:intron 25.0%
! TTAAATGAATAATCATCGAG+TGG - tig0021657:45688-45707 Msa1393310:intron 25.0%
! ATTACTTGCAAATAACAATG+AGG - tig0021657:46035-46054 Msa1393310:intron 25.0%
!! GAAGAATGAAATGTTTGTTT+TGG - tig0021657:46300-46319 Msa1393310:intron 25.0%
! CAATAATATCCAATCAATCA+TGG - tig0021657:46721-46740 Msa1393310:intron 25.0%
! TAAAACTGTTTATCCAAACA+TGG + tig0021657:46781-46800 None:intergenic 25.0%
! AAAGACTTATGAGACTATTT+GGG + tig0021657:46968-46987 None:intergenic 25.0%
!! GACAATATAAACATGCTTTT+AGG + tig0021657:47162-47181 None:intergenic 25.0%
! TTATATTGTCATTAAACTGG+AGG - tig0021657:47172-47191 Msa1393310:CDS 25.0%
! TCGATATAATCAAACTCTTA+AGG + tig0021657:47255-47274 None:intergenic 25.0%
! TTATATCGATGCTTGTTTAA+CGG - tig0021657:47266-47285 Msa1393310:intron 25.0%
! CAAAAGATAATTTGGACATT+AGG - tig0021657:47311-47330 Msa1393310:CDS 25.0%
! AAAGATAATTTGGACATTAG+GGG - tig0021657:47313-47332 Msa1393310:CDS 25.0%
! TCAAAAAAATTGAGCAATGT+GGG + tig0021657:47366-47385 None:intergenic 25.0%
! ATCAAAAAAATTGAGCAATG+TGG + tig0021657:47367-47386 None:intergenic 25.0%
!!! GCTCAATTTTTTTGATTGTT+TGG - tig0021657:47371-47390 Msa1393310:CDS 25.0%
! TTAGGTTTATACGCATTATT+TGG - tig0021657:47549-47568 Msa1393310:CDS 25.0%
! TAGGTTTATACGCATTATTT+GGG - tig0021657:47550-47569 Msa1393310:CDS 25.0%
! ACGTTTAAAAAAGGTAGAAA+AGG + tig0021657:47634-47653 None:intergenic 25.0%
!! GGATTACTACAATTGTATTT+TGG + tig0021657:47704-47723 None:intergenic 25.0%
! AGTTGAAATTCGCTTATTAT+GGG + tig0021657:47726-47745 None:intergenic 25.0%
! AAGTTGAAATTCGCTTATTA+TGG + tig0021657:47727-47746 None:intergenic 25.0%
! TTTATAAAAATGGTTCACGA+CGG + tig0021657:48131-48150 None:intergenic 25.0%
!! ACAGCTTGATAACTTTAATT+CGG + tig0021657:48156-48175 None:intergenic 25.0%
! ATACTTATCACAACATATGA+AGG - tig0021657:48252-48271 Msa1393310:intron 25.0%
!! TTGAACCAATCAAAATTTTC+AGG - tig0021657:48582-48601 Msa1393310:CDS 25.0%
! CTGCTATTACTTCAATTATT+GGG - tig0021657:48715-48734 Msa1393310:CDS 25.0%
! TGCTATTACTTCAATTATTG+GGG - tig0021657:48716-48735 Msa1393310:CDS 25.0%
!!! AATTGGGATTGTTGATTTTA+GGG + tig0021657:48845-48864 None:intergenic 25.0%
TGAATTTGGATCTGAATCAA+TGG + tig0021657:44708-44727 None:intergenic 30.0%
TGGTATAAGAAGCTTGAATT+TGG + tig0021657:44722-44741 None:intergenic 30.0%
!! ATTTCATGGTTGACTTGAAA+TGG + tig0021657:44854-44873 None:intergenic 30.0%
! AAGTCTAGTTCATTGATGAT+AGG + tig0021657:44908-44927 None:intergenic 30.0%
! TGATGATGAAGATTTAGTGA+GGG + tig0021657:44986-45005 None:intergenic 30.0%
! ATGATGATGAAGATTTAGTG+AGG + tig0021657:44987-45006 None:intergenic 30.0%
TCACTATTGTATAAACCATG+TGG - tig0021657:45102-45121 Msa1393310:CDS 30.0%
TTGATGAGGAGAAACAAAAT+GGG - tig0021657:45914-45933 Msa1393310:intron 30.0%
! TTTGGTTCCAAGACAATTTA+TGG - tig0021657:45948-45967 Msa1393310:intron 30.0%
! CTTTTGTATCAGATCAATGA+TGG - tig0021657:46350-46369 Msa1393310:intron 30.0%
AGCATGCATATAAGATCAAT+TGG + tig0021657:46604-46623 None:intergenic 30.0%
! TAGTAAAAGTACATGAGCTA+TGG + tig0021657:46653-46672 None:intergenic 30.0%
AATTACCTGAAAAGAGCTTA+TGG - tig0021657:46926-46945 Msa1393310:intron 30.0%
ATTACCTGAAAAGAGCTTAT+GGG - tig0021657:46927-46946 Msa1393310:intron 30.0%
CAAAGACTTATGAGACTATT+TGG + tig0021657:46969-46988 None:intergenic 30.0%
ACACTCAAACCAGAATAAAA+TGG - tig0021657:47113-47132 Msa1393310:CDS 30.0%
AAGATAATTTGGACATTAGG+GGG - tig0021657:47314-47333 Msa1393310:CDS 30.0%
GTTGAAATTCGCTTATTATG+GGG + tig0021657:47725-47744 None:intergenic 30.0%
AATTACCTGAAATGAGCTTA+TGG - tig0021657:47867-47886 Msa1393310:intron 30.0%
AAGCACTATTGAGACTATTT+GGG + tig0021657:47908-47927 None:intergenic 30.0%
TAAGCACTATTGAGACTATT+TGG + tig0021657:47909-47928 None:intergenic 30.0%
!!! TTTTTTACGTCTCTATGCTA+AGG + tig0021657:48079-48098 None:intergenic 30.0%
! CAGCTTGATAACTTTAATTC+GGG + tig0021657:48155-48174 None:intergenic 30.0%
! ACATGTAACATAATTTGCAC+AGG - tig0021657:48203-48222 Msa1393310:intron 30.0%
!! GAAGTCCTGAAAATTTTGAT+TGG + tig0021657:48590-48609 None:intergenic 30.0%
GCTGCTATTACTTCAATTAT+TGG - tig0021657:48714-48733 Msa1393310:CDS 30.0%
CTAGTACCGTTATTATTGTT+TGG + tig0021657:48750-48769 None:intergenic 30.0%
AATAACGGTACTAGCAATAA+TGG - tig0021657:48756-48775 Msa1393310:CDS 30.0%
ACAATAGCTAACAACACTAA+TGG - tig0021657:48786-48805 Msa1393310:CDS 30.0%
ACATCAAGTAACAATACCAT+TGG - tig0021657:48816-48835 Msa1393310:CDS 30.0%
!!! GAATTGGGATTGTTGATTTT+AGG + tig0021657:48846-48865 None:intergenic 30.0%
!!! TTTTTGAGGTTGTTGTGTTG+AGG + tig0021657:44772-44791 None:intergenic 35.0%
ACAACCTCAAAAACTTCAAG+TGG - tig0021657:44779-44798 Msa1393310:CDS 35.0%
! GTTTCCACTTGAAGTTTTTG+AGG + tig0021657:44786-44805 None:intergenic 35.0%
!! AGGGTTGATGAGATATTTCA+TGG + tig0021657:44868-44887 None:intergenic 35.0%
GGTCTCATTTCATGATCAAA+GGG + tig0021657:44887-44906 None:intergenic 35.0%
AGGTCTCATTTCATGATCAA+AGG + tig0021657:44888-44907 None:intergenic 35.0%
ACTTTGAATTCCAAGAGAGA+AGG + tig0021657:45040-45059 None:intergenic 35.0%
AACATATGGCCACAATATCA+AGG + tig0021657:45129-45148 None:intergenic 35.0%
CAAATGAGTTAATCACCCTT+TGG - tig0021657:45223-45242 Msa1393310:CDS 35.0%
AAGCAATGATCAATCCATGA+TGG - tig0021657:45563-45582 Msa1393310:intron 35.0%
CTTGATGAGGAGAAACAAAA+TGG - tig0021657:45913-45932 Msa1393310:intron 35.0%
ACAATTTATGGAGCTTGGAT+TGG - tig0021657:45960-45979 Msa1393310:intron 35.0%
TTTGACTGATCTTGACTTCT+TGG + tig0021657:46015-46034 None:intergenic 35.0%
TAACAATGAGGAAGATTCCA+AGG - tig0021657:46047-46066 Msa1393310:intron 35.0%
TGTGTCTGATCATGAAAAGA+AGG - tig0021657:46080-46099 Msa1393310:intron 35.0%
ATGAAAAGAAGGAATCCGAT+CGG - tig0021657:46091-46110 Msa1393310:intron 35.0%
GCTTGTTCAACATTTGTTTG+AGG + tig0021657:46195-46214 None:intergenic 35.0%
AACAAATGTTGAACAAGCTG+AGG - tig0021657:46197-46216 Msa1393310:intron 35.0%
!! AGATCAATGATGGATGTCAA+TGG - tig0021657:46360-46379 Msa1393310:intron 35.0%
! TAACATACCTGTTTTCTCAC+AGG + tig0021657:46464-46483 None:intergenic 35.0%
GGCACTGTTATAATATGTCA+TGG - tig0021657:46521-46540 Msa1393310:intron 35.0%
! AGCTTGAGATTGATTTAGCT+AGG - tig0021657:46685-46704 Msa1393310:intron 35.0%
TATAAAACAGACCCCTAATG+AGG - tig0021657:47017-47036 Msa1393310:intron 35.0%
ACTACAGTAACAACCAAAGT+CGG - tig0021657:47062-47081 Msa1393310:intron 35.0%
ATTGTCATTAAACTGGAGGT+TGG - tig0021657:47176-47195 Msa1393310:CDS 35.0%
! TCAAACTCTTAAGGTGCTTT+CGG + tig0021657:47246-47265 None:intergenic 35.0%
ACCATTTGAGTCCAATGATT+TGG - tig0021657:47778-47797 Msa1393310:CDS 35.0%
ACCAAATCATTGGACTCAAA+TGG + tig0021657:47782-47801 None:intergenic 35.0%
!! TTTGAGTCCAATGATTTGGT+TGG - tig0021657:47782-47801 Msa1393310:CDS 35.0%
ACTTTGACCAACCAAATCAT+TGG + tig0021657:47792-47811 None:intergenic 35.0%
! CATAATTTGCACAGGTACAA+AGG - tig0021657:48211-48230 Msa1393310:intron 35.0%
TTGCTCTTGTGAGGTAATTT+GGG + tig0021657:48389-48408 None:intergenic 35.0%
ATTGCTCTTGTGAGGTAATT+TGG + tig0021657:48390-48409 None:intergenic 35.0%
CTATGCTTGAAGAATAAGGA+AGG + tig0021657:48413-48432 None:intergenic 35.0%
GTTGCTATGCTTGAAGAATA+AGG + tig0021657:48417-48436 None:intergenic 35.0%
TCCATTTCCAACTGTTACAT+TGG - tig0021657:48452-48471 Msa1393310:intron 35.0%
TCCAATGTAACAGTTGGAAA+TGG + tig0021657:48456-48475 None:intergenic 35.0%
!! AATTTTGAGGGAAGGGAAAT+TGG + tig0021657:48533-48552 None:intergenic 35.0%
! AATTTTCTGCCTCAGGTATT+TGG - tig0021657:48549-48568 Msa1393310:CDS 35.0%
GCACAGCCAAACAATAATAA+CGG - tig0021657:48741-48760 Msa1393310:CDS 35.0%
TGATGAAGATTTAGTGAGGG+AGG + tig0021657:44983-45002 None:intergenic 40.0%
GAATTCCAAGAGAGAAGGAT+CGG + tig0021657:45035-45054 None:intergenic 40.0%
GGATTGATCATTGCTTGTGT+TGG + tig0021657:45559-45578 None:intergenic 40.0%
CAATGATCAATCCATGATGG+AGG - tig0021657:45566-45585 Msa1393310:intron 40.0%
AGACAAAAGAGCTAAGCTTG+AGG - tig0021657:45611-45630 Msa1393310:intron 40.0%
ACATGCTTGATGAGGGTAAT+AGG - tig0021657:45794-45813 Msa1393310:intron 40.0%
ACAACACATTGCAGATGCAT+TGG - tig0021657:45821-45840 Msa1393310:intron 40.0%
GAAGAGCAAAAGCAAGTGAT+TGG - tig0021657:45883-45902 Msa1393310:intron 40.0%
GATTGGTGGAAAACTTGATG+AGG - tig0021657:45900-45919 Msa1393310:intron 40.0%
GAGGAGAAACAAAATGGGAA+TGG - tig0021657:45919-45938 Msa1393310:intron 40.0%
GAGAAACAAAATGGGAATGG+TGG - tig0021657:45922-45941 Msa1393310:intron 40.0%
!! AAATGGGAATGGTGGAGTTT+TGG - tig0021657:45930-45949 Msa1393310:intron 40.0%
CCAAGCTCCATAAATTGTCT+TGG + tig0021657:45958-45977 None:intergenic 40.0%
CCAAGACAATTTATGGAGCT+TGG - tig0021657:45955-45974 Msa1393310:intron 40.0%
AGACACAAGTTCTTCAACCT+TGG + tig0021657:46067-46086 None:intergenic 40.0%
TGAAAAGAAGGAATCCGATC+GGG - tig0021657:46092-46111 Msa1393310:intron 40.0%
GGATGTCAATGGAGAAAGTA+TGG - tig0021657:46371-46390 Msa1393310:intron 40.0%
! GAGAAAGTATGGACAGAAGA+TGG - tig0021657:46382-46401 Msa1393310:intron 40.0%
AGCTTATTATCGATGCACCA+TGG - tig0021657:46427-46446 Msa1393310:intron 40.0%
! TTTTCTCACAGGACAACCTA+AGG + tig0021657:46453-46472 None:intergenic 40.0%
!! GCTATAATAGTTGGTGACAC+AGG - tig0021657:46500-46519 Msa1393310:intron 40.0%
CAGAGTTGAGAACTCAAAAC+AGG + tig0021657:46566-46585 None:intergenic 40.0%
AAACGTGTGCCATGATTGAT+TGG + tig0021657:46733-46752 None:intergenic 40.0%
GTCTTCAACATTTCGATGCT+AGG - tig0021657:46755-46774 Msa1393310:intron 40.0%
CTACAGTAACAACCAAAGTC+GGG - tig0021657:47063-47082 Msa1393310:intron 40.0%
! AACTGGAGGTTGGAGTTTTA+AGG - tig0021657:47186-47205 Msa1393310:intron 40.0%
ACATGCCATAAGCTCATTTC+AGG + tig0021657:47875-47894 None:intergenic 40.0%
ACTAAAACAGACCCCTAATG+AGG - tig0021657:47957-47976 Msa1393310:CDS 40.0%
ACTTCAACCTACCTCATTAG+GGG + tig0021657:47971-47990 None:intergenic 40.0%
GACTTCAACCTACCTCATTA+GGG + tig0021657:47972-47991 None:intergenic 40.0%
TGACTTCAACCTACCTCATT+AGG + tig0021657:47973-47992 None:intergenic 40.0%
ACTGAAGTAACGACCAAAGT+CGG - tig0021657:48002-48021 Msa1393310:CDS 40.0%
GTTAGGTCCAATGTAACAGT+TGG + tig0021657:48462-48481 None:intergenic 40.0%
!! TTTGGTTTGGTGACTGAGTT+AGG + tig0021657:48479-48498 None:intergenic 40.0%
!!! TTAGGGAACTGGTTTTGGTT+TGG + tig0021657:48492-48511 None:intergenic 40.0%
!! GGTTATTAGGGAACTGGTTT+TGG + tig0021657:48497-48516 None:intergenic 40.0%
AGGGAAATTGGAACTGGTTA+GGG + tig0021657:48521-48540 None:intergenic 40.0%
AAGGGAAATTGGAACTGGTT+AGG + tig0021657:48522-48541 None:intergenic 40.0%
!! GGCAGAAAATTTTGAGGGAA+GGG + tig0021657:48540-48559 None:intergenic 40.0%
!! AGGCAGAAAATTTTGAGGGA+AGG + tig0021657:48541-48560 None:intergenic 40.0%
! CCTGAGGCAGAAAATTTTGA+GGG + tig0021657:48545-48564 None:intergenic 40.0%
! ACCTGAGGCAGAAAATTTTG+AGG + tig0021657:48546-48565 None:intergenic 40.0%
AATGTCTGACCAAATACCTG+AGG + tig0021657:48561-48580 None:intergenic 40.0%
TAGCATTAACTGTGTCAGCA+AGG + tig0021657:48659-48678 None:intergenic 40.0%
!!! GTTGATTTTAGGGCTTCCAA+TGG + tig0021657:48835-48854 None:intergenic 40.0%
! ATTTAGTGAGGGAGGTGTAG+AGG + tig0021657:44975-44994 None:intergenic 45.0%
TTACACCGATCCTTCTCTCT+TGG - tig0021657:45027-45046 Msa1393310:CDS 45.0%
CCACAATATCAAGGTCCACA+TGG + tig0021657:45120-45139 None:intergenic 45.0%
CCATGTGGACCTTGATATTG+TGG - tig0021657:45117-45136 Msa1393310:CDS 45.0%
TGCTATGTCTTCCTCCATCA+TGG + tig0021657:45580-45599 None:intergenic 45.0%
CACCTTCATTCTCTCAAGCT+CGG + tig0021657:45755-45774 None:intergenic 45.0%
AGGTGGAGAATCATCAACTG+AGG - tig0021657:45770-45789 Msa1393310:intron 45.0%
ACTGAGGAACATGCTTGATG+AGG - tig0021657:45786-45805 Msa1393310:intron 45.0%
CTGAGGAACATGCTTGATGA+GGG - tig0021657:45787-45806 Msa1393310:intron 45.0%
GCAGATGCATTGGATGAGTA+TGG - tig0021657:45831-45850 Msa1393310:intron 45.0%
GAGTATGGTGCAAGACAAGA+AGG - tig0021657:45846-45865 Msa1393310:intron 45.0%
GAGCAAAAGCAAGTGATTGG+TGG - tig0021657:45886-45905 Msa1393310:intron 45.0%
GAAAAGAAGGAATCCGATCG+GGG - tig0021657:46093-46112 Msa1393310:intron 45.0%
! GCTTCTTTCTTTTCCCCGAT+CGG + tig0021657:46109-46128 None:intergenic 45.0%
AACCCTTGCTTTCCTCATAG+TGG + tig0021657:46223-46242 None:intergenic 45.0%
! GAAGTGTACCATGTTAGCCT+CGG + tig0021657:46262-46281 None:intergenic 45.0%
TATGGACAGAAGATGGCGAA+AGG - tig0021657:46389-46408 Msa1393310:intron 45.0%
GATAATAAGCTCGAGGACAC+GGG + tig0021657:46418-46437 None:intergenic 45.0%
CGATAATAAGCTCGAGGACA+CGG + tig0021657:46419-46438 None:intergenic 45.0%
! GTGCATCGATAATAAGCTCG+AGG + tig0021657:46425-46444 None:intergenic 45.0%
AGGTTGTCCTGTGAGAAAAC+AGG - tig0021657:46454-46473 Msa1393310:intron 45.0%
TTTCGATGCTAGGCCATGTT+TGG - tig0021657:46765-46784 Msa1393310:intron 45.0%
ACCTGAAAAGAGCTTATGGG+TGG - tig0021657:46930-46949 Msa1393310:intron 45.0%
CCTGAAAAGAGCTTATGGGT+GGG - tig0021657:46931-46950 Msa1393310:intron 45.0%
AAACAGACCCCTAATGAGGT+AGG - tig0021657:47021-47040 Msa1393310:intron 45.0%
GCTTCAACCTACCTCATTAG+GGG + tig0021657:47031-47050 None:intergenic 45.0%
GGCTTCAACCTACCTCATTA+GGG + tig0021657:47032-47051 None:intergenic 45.0%
TGGCTTCAACCTACCTCATT+AGG + tig0021657:47033-47052 None:intergenic 45.0%
AAACAGACCCCTAATGAGGT+AGG - tig0021657:47021-47040 Msa1393310:intron 45.0%
CTGAAGTAACGACCAAAGTC+GGG - tig0021657:48003-48022 Msa1393310:CDS 45.0%
CAAGAATTGTGACCCGACTT+TGG + tig0021657:48018-48037 None:intergenic 45.0%
TGTACCATTTCCATAGCTGC+TGG + tig0021657:48300-48319 None:intergenic 45.0%
GCTGCAAGAATGTTACTGTC+AGG - tig0021657:48333-48352 Msa1393310:intron 45.0%
AGTCCATCAGCACTTGTCAT+TGG + tig0021657:48360-48379 None:intergenic 45.0%
AAGGAAGGATTGCTCTTGTG+AGG + tig0021657:48398-48417 None:intergenic 45.0%
ACTGGTTAGGGGGGTTATTA+GGG + tig0021657:48509-48528 None:intergenic 45.0%
AACTGGTTAGGGGGGTTATT+AGG + tig0021657:48510-48529 None:intergenic 45.0%
GAAATTGGAACTGGTTAGGG+GGG + tig0021657:48518-48537 None:intergenic 45.0%
GGAAATTGGAACTGGTTAGG+GGG + tig0021657:48519-48538 None:intergenic 45.0%
GGGAAATTGGAACTGGTTAG+GGG + tig0021657:48520-48539 None:intergenic 45.0%
! CCCTCAAAATTTTCTGCCTC+AGG - tig0021657:48542-48561 Msa1393310:CDS 45.0%
GCTAAAGCTGCAGTGAAGTT+AGG + tig0021657:48693-48712 None:intergenic 45.0%
!! AAATTTATAAAGTAAAAATA+TGG + tig0021657:45410-45429 None:intergenic 5.0%
!!! TATTTTTACTTTATAAATTT+TGG - tig0021657:45410-45429 Msa1393310:intron 5.0%
AGGCAGATGCAAGGTTGTGA+TGG + tig0021657:44949-44968 None:intergenic 50.0%
TAGAGGTAGAGGCAGATGCA+AGG + tig0021657:44958-44977 None:intergenic 50.0%
AGCCGAGCTTGAGAGAATGA+AGG - tig0021657:45750-45769 Msa1393310:intron 50.0%
CGAGCTTGAGAGAATGAAGG+TGG - tig0021657:45753-45772 Msa1393310:intron 50.0%
GGTGCAAGACAAGAAGGTAG+AGG - tig0021657:45852-45871 Msa1393310:intron 50.0%
GCAGCTAAAACTCGATCTGC+AGG + tig0021657:46138-46157 None:intergenic 50.0%
AACAAGCTGAGGCCACTATG+AGG - tig0021657:46208-46227 Msa1393310:intron 50.0%
AGGCCACTATGAGGAAAGCA+AGG - tig0021657:46217-46236 Msa1393310:intron 50.0%
GGCCACTATGAGGAAAGCAA+GGG - tig0021657:46218-46237 Msa1393310:intron 50.0%
TTCAGTTAGAGCTCGATCCG+AGG - tig0021657:46242-46261 Msa1393310:intron 50.0%
TATCGATGCACCATGGCCTT+AGG - tig0021657:46434-46453 Msa1393310:intron 50.0%
! CCCACCCATAAGCTCTTTTC+AGG + tig0021657:46934-46953 None:intergenic 50.0%
! CAAGAAGTACGACCCGACTT+TGG + tig0021657:47078-47097 None:intergenic 50.0%
!! ACATTAGGGGGTGCTTGTAG+CGG - tig0021657:47326-47345 Msa1393310:CDS 50.0%
ACCATTTCCATAGCTGCTGG+AGG + tig0021657:48297-48316 None:intergenic 50.0%
!! GGACCAATGACAAGTGCTGA+TGG - tig0021657:48354-48373 Msa1393310:intron 50.0%
TAGGGGGGTTATTAGGGAAC+TGG + tig0021657:48503-48522 None:intergenic 50.0%
GAGGGAAGGGAAATTGGAAC+TGG + tig0021657:48527-48546 None:intergenic 50.0%
ACTGTGTCAGCAAGGTTCTG+TGG + tig0021657:48651-48670 None:intergenic 50.0%
! TGAGGGAGGTGTAGAGGTAG+AGG + tig0021657:44969-44988 None:intergenic 55.0%
AGCTCGATCCGAGGCTAACA+TGG - tig0021657:46251-46270 Msa1393310:intron 55.0%
CACAGGACAACCTAAGGCCA+TGG + tig0021657:46447-46466 None:intergenic 55.0%
AGGATGCGAGGGTGACATCA+TGG + tig0021657:48102-48121 None:intergenic 55.0%
TGATGTCACCCTCGCATCCT+AGG - tig0021657:48102-48121 Msa1393310:intron 55.0%
ATGGTTCACGACGGTGACCT+AGG + tig0021657:48122-48141 None:intergenic 55.0%
TGCTTTGCCTCCAGCAGCTA+TGG - tig0021657:48287-48306 Msa1393310:intron 55.0%
GCCTCCAGCAGCTATGGAAA+TGG - tig0021657:48293-48312 Msa1393310:intron 55.0%
!! AGGGGGTGCTTGTAGCGGAT+AGG - tig0021657:47331-47350 Msa1393310:CDS 60.0%
GACGGTGACCTAGGATGCGA+GGG + tig0021657:48113-48132 None:intergenic 60.0%
GGAGAGTCCAAGCCCTCCAC+TGG + tig0021657:44687-44706 None:intergenic 65.0%
CGACGGTGACCTAGGATGCG+AGG + tig0021657:48114-48133 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021657 gene 44680 48878 44680 ID=Msa1393310;Name=Msa1393310
tig0021657 mRNA 44680 48878 44680 ID=Msa1393310-mRNA-1;Parent=Msa1393310;Name=Msa1393310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.4|1|1|1|5|0|595
tig0021657 exon 48495 48878 48495 ID=Msa1393310-mRNA-1:exon:13725;Parent=Msa1393310-mRNA-1
tig0021657 exon 47926 48024 47926 ID=Msa1393310-mRNA-1:exon:13724;Parent=Msa1393310-mRNA-1
tig0021657 exon 47286 47822 47286 ID=Msa1393310-mRNA-1:exon:13723;Parent=Msa1393310-mRNA-1
tig0021657 exon 47083 47196 47083 ID=Msa1393310-mRNA-1:exon:13722;Parent=Msa1393310-mRNA-1
tig0021657 exon 44680 45333 44680 ID=Msa1393310-mRNA-1:exon:13721;Parent=Msa1393310-mRNA-1
tig0021657 CDS 48495 48878 48495 ID=Msa1393310-mRNA-1:cds;Parent=Msa1393310-mRNA-1
tig0021657 CDS 47926 48024 47926 ID=Msa1393310-mRNA-1:cds;Parent=Msa1393310-mRNA-1
tig0021657 CDS 47286 47822 47286 ID=Msa1393310-mRNA-1:cds;Parent=Msa1393310-mRNA-1
tig0021657 CDS 47083 47196 47083 ID=Msa1393310-mRNA-1:cds;Parent=Msa1393310-mRNA-1
tig0021657 CDS 44680 45333 44680 ID=Msa1393310-mRNA-1:cds;Parent=Msa1393310-mRNA-1
Gene Sequence

>Msa1393310

ATGGCCAGTGGAGGGCTTGGACTCTCCATTGATTCAGATCCAAATTCAAGCTTCTTATACCATAAGCAAATAGAATTCTCAACTCTTTTCCTCAACACAACAACCTCAAAAACTTCAAGTGGAAACTTATATAGTCACAAAATGGATACCACAAACAACAAAAACAAATCTCCATTTCAAGTCAACCATGAAATATCTCATCAACCCTTTGATCATGAAATGAGACCTATCATCAATGAACTAGACTTTTTCTCTCAAAACAACAACCATCACAACCTTGCATCTGCCTCTACCTCTACACCTCCCTCACTAAATCTTCATCATCATCATCATCATATACATGATCATTACACCGATCCTTCTCTCTTGGAATTCAAAGTCAACACTAGTTTGAATCTTCTTACGACCAACACAAGCAATGATCAATCCATGATGGAGGAAGACATAGCAAGTAATTCAGAAGACAAAAGAGCTAAGCTTGAGCTCGTTGTTCTTCAAGCCGAGCTTGAGAGAATGAAGGTGGAGAATCATCAACTGAGGAACATGCTTGATGAGGGTAATAGGAAGTACAACACATTGCAGATGCATTGGATGAGTATGGTGCAAGACAAGAAGGTAGAGGATTGTAATGAAGAGCAAAAGCAAGTGATTGGTGGAAAACTTGATGAGGAGAAACAAAATGGGAATGGTGGAGTTTTGGTTCCAAGACAATTTATGGAGCTTGGATTGGCTGCAAATAATTCTGATGCTATTGATGAACCAAGAAGTCAAGATCAGTCAAAATTACTTGCAAATAACAATGAGGAAGATTCCAAGGTTGAAGAACTTGTGTCTGATCATGAAAAGAAGGAATCCGATCGGGGAAAAGAAAGAAGCAGTAGTCCTGCAGATCGAGTTTTAGCTGCTAATAATACTAATAATAATGTTGCAAACTTTAGTCCTCAAACAAATGTTGAACAAGCTGAGGCCACTATGAGGAAAGCAAGGGTTTCAGTTAGAGCTCGATCCGAGGCTAACATGATCAATGATGGATGTCAATGGAGAAAGTATGGACAGAAGATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACCATGGCCTTAGGTTGTCCTGTGAGAAAACAGGTACAAAGGTGTGCTGAAGACAAAACAATACTTATCACAACATATGAAGGACATCACATTCATGCTTTGCCTCCAGCAGCTATGGAAATGGTACAAACAACATCATCAGCTGCAAGAATGTTACTGTCAGGACCAATGACAAGTGCTGATGGACTAATGAACCCAAATTACCTCACAAGAGCAATCCTTCCTTATTCTTCAAGCATAGCAACTATCTCAGCATCAGCTCCATTTCCAACTGTTACATTGGACCTAACTCAGTCACCAAACCAAAACCAGTTCCCTAATAACCCCCCTAACCAGTTCCAATTTCCCTTCCCTCAAAATTTTCTGCCTCAGGTATTTGGTCAGACATTGTTGAACCAATCAAAATTTTCAGGACTTCAAATGTCTCAAGATGCAGCAAACAGTTCTCAGCAGACACCACAGAACCTTGCTGACACAGTTAATGCTATTGCAGCTGATCCTAACTTCACTGCAGCTTTAGCAGCTGCTATTACTTCAATTATTGGGGCTGCACAGCCAAACAATAATAACGGTACTAGCAATAATGGTAACAGTACAATAGCTAACAACACTAATGGCAATGTTACATCAAGTAACAATACCATTGGAAGCCCTAAAATCAACAATCCCAATTCCTCAGTAGAGTAG
Protein sequence

>Msa1393310

MASGGLGLSIDSDPNSSFLYHKQIEFSTLFLNTTTSKTSSGNLYSHKMDTTNNKNKSPFQVNHEISHQPFDHEMRPIINELDFFSQNNNHHNLASASTSTPPSLNLHHHHHHIHDHYTDPSLLEFKVNTSLNLLTTNTSNDQSMMEEDIASNSEDKRAKLELVVLQAELERMKVENHQLRNMLDEGNRKYNTLQMHWMSMVQDKKVEDCNEEQKQVIGGKLDEEKQNGNGGVLVPRQFMELGLAANNSDAIDEPRSQDQSKLLANNNEEDSKVEELVSDHEKKESDRGKERSSSPADRVLAANNTNNNVANFSPQTNVEQAEATMRKARVSVRARSEANMINDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDKTILITTYEGHHIHALPPAAMEMVQTTSSAARMLLSGPMTSADGLMNPNYLTRAILPYSSSIATISASAPFPTVTLDLTQSPNQNQFPNNPPNQFQFPFPQNFLPQVFGQTLLNQSKFSGLQMSQDAANSSQQTPQNLADTVNAIAADPNFTAALAAAITSIIGAAQPNNNNGTSNNGNSTIANNTNGNVTSSNNTIGSPKINNPNSSVE*