Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089200 | XP_003597565.1 | 99.789 | 475 | 1 | 0 | 1 | 475 | 1 | 475 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089200 | sp|Q9CAI5|CKL2_ARATH | 78.038 | 469 | 98 | 4 | 1 | 468 | 1 | 465 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089200 | G7IS36 | 99.789 | 475 | 1 | 0 | 1 | 475 | 1 | 475 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0224120 | Msa1089200 | 0.955108 | 6.473554e-113 | -8.615850e-47 |
| Msa1089200 | Msa1364090 | 0.986206 | 5.068834e-166 | -8.615850e-47 |
| Msa0265260 | Msa1089200 | 0.984738 | 1.928678e-161 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089200 | MtrunA17_Chr2g0329981 | 99.789 | 475 | 1 | 0 | 1 | 475 | 1 | 475 | 0.0 | 979 |
| Msa1089200 | MtrunA17_Chr8g0342821 | 83.229 | 477 | 75 | 5 | 1 | 475 | 1 | 474 | 0.0 | 808 |
| Msa1089200 | MtrunA17_Chr4g0071031 | 75.681 | 477 | 91 | 5 | 1 | 475 | 1 | 454 | 0.0 | 706 |
| Msa1089200 | MtrunA17_Chr2g0299661 | 69.787 | 470 | 138 | 3 | 1 | 470 | 1 | 466 | 0.0 | 677 |
| Msa1089200 | MtrunA17_Chr1g0183631 | 60.842 | 475 | 156 | 9 | 1 | 468 | 1 | 452 | 0.0 | 554 |
| Msa1089200 | MtrunA17_Chr7g0261501 | 73.639 | 349 | 90 | 1 | 1 | 349 | 1 | 347 | 0.0 | 550 |
| Msa1089200 | MtrunA17_Chr1g0166821 | 74.432 | 352 | 80 | 3 | 1 | 349 | 2 | 346 | 0.0 | 547 |
| Msa1089200 | MtrunA17_Chr1g0187571 | 69.474 | 380 | 109 | 3 | 1 | 380 | 2 | 374 | 0.0 | 536 |
| Msa1089200 | MtrunA17_Chr6g0486611 | 63.007 | 419 | 139 | 7 | 1 | 411 | 1 | 411 | 0.0 | 516 |
| Msa1089200 | MtrunA17_Chr8g0390211 | 63.706 | 394 | 132 | 5 | 1 | 392 | 1 | 385 | 9.63e-180 | 509 |
| Msa1089200 | MtrunA17_Chr3g0140071 | 66.667 | 342 | 107 | 2 | 1 | 342 | 1 | 335 | 4.31e-168 | 480 |
| Msa1089200 | MtrunA17_Chr1g0146151 | 66.972 | 327 | 107 | 1 | 1 | 327 | 1 | 326 | 1.93e-165 | 473 |
| Msa1089200 | MtrunA17_Chr1g0167261 | 69.159 | 321 | 95 | 3 | 1 | 317 | 2 | 322 | 4.99e-164 | 467 |
| Msa1089200 | MtrunA17_Chr7g0214531 | 38.710 | 279 | 154 | 5 | 9 | 273 | 37 | 312 | 5.44e-60 | 207 |
| Msa1089200 | MtrunA17_Chr3g0140431 | 38.828 | 273 | 156 | 5 | 9 | 273 | 38 | 307 | 8.12e-59 | 203 |
| Msa1089200 | MtrunA17_Chr1g0146301 | 38.462 | 273 | 157 | 5 | 9 | 273 | 124 | 393 | 2.99e-58 | 204 |
| Msa1089200 | MtrunA17_Chr1g0213321 | 37.770 | 278 | 161 | 5 | 9 | 277 | 119 | 393 | 1.44e-57 | 201 |
| Msa1089200 | MtrunA17_Chr7g0253211 | 38.062 | 289 | 161 | 6 | 4 | 277 | 317 | 602 | 2.82e-56 | 201 |
| Msa1089200 | MtrunA17_Chr8g0340491 | 36.879 | 282 | 156 | 7 | 9 | 273 | 128 | 404 | 2.97e-52 | 187 |
| Msa1089200 | MtrunA17_Chr5g0405421 | 26.957 | 230 | 151 | 7 | 2 | 223 | 92 | 312 | 4.22e-13 | 71.6 |
| Msa1089200 | MtrunA17_Chr3g0107011 | 27.917 | 240 | 118 | 11 | 1 | 214 | 5 | 215 | 1.35e-11 | 66.6 |
| Msa1089200 | MtrunA17_Chr7g0267751 | 27.602 | 221 | 128 | 9 | 9 | 215 | 135 | 337 | 1.83e-11 | 66.2 |
| Msa1089200 | MtrunA17_Chr7g0272841 | 24.781 | 343 | 186 | 13 | 8 | 324 | 67 | 363 | 2.30e-11 | 66.2 |
| Msa1089200 | MtrunA17_Chr8g0346071 | 30.942 | 223 | 122 | 13 | 4 | 213 | 13 | 216 | 7.08e-11 | 64.3 |
| Msa1089200 | MtrunA17_Chr4g0072831 | 32.258 | 155 | 81 | 7 | 1 | 153 | 2 | 134 | 8.62e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089200 | AT1G72710.1 | 78.038 | 469 | 98 | 4 | 1 | 468 | 1 | 465 | 0.0 | 738 |
| Msa1089200 | AT4G26100.1 | 71.550 | 471 | 109 | 5 | 1 | 471 | 1 | 446 | 0.0 | 677 |
| Msa1089200 | AT5G57015.1 | 69.538 | 476 | 102 | 6 | 1 | 475 | 1 | 434 | 0.0 | 664 |
| Msa1089200 | AT2G19470.1 | 82.569 | 327 | 57 | 0 | 1 | 327 | 1 | 327 | 0.0 | 590 |
| Msa1089200 | AT3G23340.1 | 73.371 | 353 | 83 | 3 | 1 | 349 | 1 | 346 | 0.0 | 545 |
| Msa1089200 | AT5G44100.1 | 81.818 | 297 | 54 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
| Msa1089200 | AT5G44100.2 | 81.818 | 297 | 54 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
| Msa1089200 | AT1G03930.1 | 81.481 | 297 | 55 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
| Msa1089200 | AT4G14340.1 | 65.625 | 416 | 120 | 7 | 1 | 411 | 7 | 404 | 0.0 | 539 |
| Msa1089200 | AT4G28540.1 | 60.131 | 459 | 164 | 6 | 1 | 449 | 5 | 454 | 0.0 | 530 |
| Msa1089200 | AT5G43320.1 | 64.455 | 422 | 119 | 6 | 1 | 406 | 1 | 407 | 0.0 | 530 |
| Msa1089200 | AT1G04440.1 | 70.286 | 350 | 103 | 1 | 1 | 349 | 1 | 350 | 0.0 | 525 |
| Msa1089200 | AT4G14340.2 | 74.775 | 333 | 75 | 3 | 1 | 330 | 7 | 333 | 0.0 | 525 |
| Msa1089200 | AT5G43320.2 | 73.780 | 328 | 84 | 1 | 1 | 328 | 1 | 326 | 0.0 | 513 |
| Msa1089200 | AT5G43320.3 | 73.780 | 328 | 84 | 1 | 1 | 328 | 1 | 326 | 0.0 | 513 |
| Msa1089200 | AT3G23340.2 | 72.973 | 333 | 79 | 3 | 21 | 349 | 7 | 332 | 3.78e-180 | 511 |
| Msa1089200 | AT4G28860.2 | 68.272 | 353 | 106 | 4 | 1 | 352 | 1 | 348 | 4.55e-178 | 504 |
| Msa1089200 | AT4G28880.3 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1089200 | AT4G28880.2 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1089200 | AT4G28880.1 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1089200 | AT4G28880.4 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1089200 | AT4G28860.1 | 74.351 | 308 | 79 | 0 | 1 | 308 | 1 | 308 | 1.14e-177 | 504 |
| Msa1089200 | AT4G08800.1 | 70.164 | 305 | 59 | 2 | 1 | 305 | 1 | 273 | 3.36e-158 | 450 |
| Msa1089200 | AT2G25760.2 | 39.721 | 287 | 156 | 5 | 4 | 273 | 100 | 386 | 1.46e-63 | 218 |
| Msa1089200 | AT2G25760.1 | 39.024 | 287 | 155 | 6 | 4 | 273 | 100 | 383 | 1.72e-60 | 210 |
| Msa1089200 | AT3G03940.1 | 37.716 | 289 | 162 | 6 | 4 | 277 | 133 | 418 | 4.10e-57 | 201 |
| Msa1089200 | AT5G18190.2 | 37.370 | 289 | 163 | 6 | 4 | 277 | 123 | 408 | 1.54e-56 | 199 |
| Msa1089200 | AT5G18190.1 | 37.370 | 289 | 163 | 6 | 4 | 277 | 123 | 408 | 1.54e-56 | 199 |
| Msa1089200 | AT3G13670.1 | 36.396 | 283 | 163 | 5 | 9 | 277 | 137 | 416 | 9.09e-56 | 197 |
| Msa1089200 | AT2G17890.1 | 26.667 | 225 | 148 | 8 | 7 | 223 | 106 | 321 | 5.02e-13 | 71.6 |
| Msa1089200 | AT3G06030.1 | 28.054 | 221 | 130 | 8 | 8 | 213 | 67 | 273 | 3.10e-12 | 69.3 |
| Msa1089200 | AT3G50530.1 | 26.271 | 236 | 133 | 10 | 5 | 219 | 144 | 359 | 1.09e-11 | 67.4 |
| Msa1089200 | AT4G36070.1 | 26.244 | 221 | 146 | 7 | 7 | 219 | 69 | 280 | 1.29e-11 | 67.0 |
| Msa1089200 | AT4G36070.2 | 26.244 | 221 | 146 | 7 | 7 | 219 | 69 | 280 | 1.41e-11 | 67.0 |
| Msa1089200 | AT5G21326.1 | 27.311 | 238 | 121 | 11 | 1 | 214 | 6 | 215 | 1.93e-11 | 66.2 |
| Msa1089200 | AT1G09000.1 | 27.313 | 227 | 136 | 8 | 1 | 213 | 63 | 274 | 2.24e-11 | 66.6 |
| Msa1089200 | AT1G09000.2 | 27.313 | 227 | 136 | 8 | 1 | 213 | 63 | 274 | 2.69e-11 | 66.2 |
Find 150 sgRNAs with CRISPR-Local
Find 414 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATAAAACCCTAGAAAT+TGG | 0.164625 | 7_3:-2545097 | None:intergenic |
| TCTGGTGCTGGGCCAAGTTC+TGG | 0.217410 | 7_3:+2549228 | Msa1089200:CDS |
| TGTTCTTGTAATGGATTTAC+TGG | 0.238900 | 7_3:+2546349 | Msa1089200:CDS |
| ATCTCCAATTCCCAATTTCT+AGG | 0.245279 | 7_3:+2545086 | Msa1089200:five_prime_UTR |
| ATATTGCAGGGTTCTGGTGC+TGG | 0.265600 | 7_3:+2549216 | Msa1089200:intron |
| CCTTCTCGTCATTGAAATTC+AGG | 0.271965 | 7_3:-2550503 | None:intergenic |
| TTCCGTCTTGGTCGCAAAAT+TGG | 0.279587 | 7_3:+2545159 | Msa1089200:CDS |
| TCCTCCCCTCAGGGTTGCTT+TGG | 0.290501 | 7_3:-2544892 | None:intergenic |
| GAAAACAAATTACGTTTGTT+TGG | 0.300456 | 7_3:+2544866 | Msa1089200:five_prime_UTR |
| AGTGGCATATTGCAGGGTTC+TGG | 0.307259 | 7_3:+2549210 | Msa1089200:intron |
| GTGAGATGGTTTGGCGTAGA+AGG | 0.320994 | 7_3:+2546317 | Msa1089200:CDS |
| CCCATCAGCATATACCTTAC+AGG | 0.322211 | 7_3:+2546778 | Msa1089200:CDS |
| ATATTCATTCTTATCTTTAG+AGG | 0.335491 | 7_3:+2550834 | Msa1089200:three_prime_UTR |
| TGTCTAGTTCTAATTTCTTC+CGG | 0.335964 | 7_3:+2550241 | Msa1089200:CDS |
| AACCCTCTCTTCCTCTTGCC+AGG | 0.341730 | 7_3:+2550334 | Msa1089200:CDS |
| GAAAAGGCGAGGGACAAAAT+TGG | 0.377134 | 7_3:-2544994 | None:intergenic |
| CGCCAAACCATCTCACATTC+GGG | 0.397128 | 7_3:-2546310 | None:intergenic |
| AAGTTTCCATCATTTACAAT+AGG | 0.399390 | 7_3:-2549588 | None:intergenic |
| TGGTTTGATCTAGTTGCTGC+TGG | 0.401251 | 7_3:+2544824 | Msa1089200:five_prime_UTR |
| ATGAATACACATCTTGGAAT+TGG | 0.405893 | 7_3:+2548366 | Msa1089200:CDS |
| AATCGAAGACATAATCAAAC+TGG | 0.405895 | 7_3:-2549065 | None:intergenic |
| AAACCCTAGAAATTGGGAAT+TGG | 0.406920 | 7_3:-2545090 | None:intergenic |
| CTTGCCAGGGATGGTAGTCC+TGG | 0.411315 | 7_3:+2550348 | Msa1089200:CDS |
| AGAAATTGGGAATTGGAGAT+TGG | 0.411923 | 7_3:-2545083 | None:intergenic |
| AGATTGCTGATACTTCAAAA+TGG | 0.414687 | 7_3:-2549091 | None:intergenic |
| AGACAACTTCCTCATGGGTC+TGG | 0.419334 | 7_3:+2546592 | Msa1089200:CDS |
| AGATTGTCTCTCCTCCCCTC+AGG | 0.425290 | 7_3:-2544902 | None:intergenic |
| CTAATAAAACCCTAGAAATT+GGG | 0.429752 | 7_3:-2545096 | None:intergenic |
| CACAAAGCAACAACATCTTC+TGG | 0.430594 | 7_3:+2550426 | Msa1089200:CDS |
| TATTGCAGGGTTCTGGTGCT+GGG | 0.431101 | 7_3:+2549217 | Msa1089200:intron |
| ACGCCAAACCATCTCACATT+CGG | 0.433060 | 7_3:-2546311 | None:intergenic |
| TTCTGTTTAGGTGGGGAAGA+TGG | 0.440368 | 7_3:+2549513 | Msa1089200:intron |
| AGAGTACAATGTTCTTGTAA+TGG | 0.440882 | 7_3:+2546340 | Msa1089200:CDS |
| CAGATTATGCATATCTGAAA+AGG | 0.441444 | 7_3:+2548882 | Msa1089200:CDS |
| TTTATGGGTAAAGCTTTGTC+AGG | 0.442027 | 7_3:-2550709 | None:intergenic |
| GAAGGAGTTGGTGAAGAGAA+AGG | 0.444415 | 7_3:-2545055 | None:intergenic |
| CTGAATAAATCCTCGAGACT+TGG | 0.445414 | 7_3:-2546374 | None:intergenic |
| TTTCTACAGCCTTCCATGGC+AGG | 0.446289 | 7_3:+2548624 | Msa1089200:intron |
| TCTTGATCACCGTATCTTGT+TGG | 0.448965 | 7_3:+2550547 | Msa1089200:three_prime_UTR |
| GAAAGTTTCTACTTCTATTG+AGG | 0.449245 | 7_3:+2548696 | Msa1089200:CDS |
| GACAACTTCCTCATGGGTCT+GGG | 0.451955 | 7_3:+2546593 | Msa1089200:CDS |
| GCTAGTATGAATACACATCT+TGG | 0.455950 | 7_3:+2548360 | Msa1089200:CDS |
| AAATGGATCTAAAGAAGTTA+TGG | 0.456366 | 7_3:+2549644 | Msa1089200:CDS |
| TCTGGACCTATTGTAAATGA+TGG | 0.460186 | 7_3:+2549582 | Msa1089200:CDS |
| AGTTTGATTATGTCTTCGAT+TGG | 0.464178 | 7_3:+2549067 | Msa1089200:CDS |
| AAGGAGTTGGTGAAGAGAAA+GGG | 0.465579 | 7_3:-2545054 | None:intergenic |
| ATCCCGAATGTGAGATGGTT+TGG | 0.467028 | 7_3:+2546308 | Msa1089200:CDS |
| AGAGAGAATAAGAACTTGAC+AGG | 0.470574 | 7_3:+2548324 | Msa1089200:intron |
| AACAACTGCATCACGACTGT+TGG | 0.471395 | 7_3:-2550298 | None:intergenic |
| GATCCAATGGAACCTCGTAT+TGG | 0.480777 | 7_3:+2545129 | Msa1089200:exon |
| AATTGGAGATTGGAAATTGA+AGG | 0.482525 | 7_3:-2545073 | None:intergenic |
| CTCTCAGCACTCACAACAGC+TGG | 0.493489 | 7_3:-2549258 | None:intergenic |
| ACCTGTAAGGTATATGCTGA+TGG | 0.497924 | 7_3:-2546779 | None:intergenic |
| TCTCCAATTCCCAATTTCTA+GGG | 0.498461 | 7_3:+2545087 | Msa1089200:five_prime_UTR |
| TTACCAATACGAGGTTCCAT+TGG | 0.498879 | 7_3:-2545132 | None:intergenic |
| GGCTACGTGTTTATTCGAGT+TGG | 0.499829 | 7_3:-2544798 | None:intergenic |
| ACCCTCTCTTCCTCTTGCCA+GGG | 0.500811 | 7_3:+2550335 | Msa1089200:CDS |
| GTACAACAACTGAGGATGCT+TGG | 0.501916 | 7_3:-2546137 | None:intergenic |
| TTTAGCAAGACCGAAGTCAA+TGG | 0.503927 | 7_3:-2546736 | None:intergenic |
| GGAGCACTCCTTAAAACCTC+TGG | 0.508111 | 7_3:+2550369 | Msa1089200:CDS |
| GAGGAAAGCTACTACAAGTT+GGG | 0.512386 | 7_3:+2550640 | Msa1089200:three_prime_UTR |
| AGACCCATGAGGAAGTTGTC+TGG | 0.513231 | 7_3:-2546590 | None:intergenic |
| TCTCTTCCTCTTGCCAGGGA+TGG | 0.513542 | 7_3:+2550339 | Msa1089200:CDS |
| AAAATTGGTAGCGGATCCTT+CGG | 0.514691 | 7_3:+2545174 | Msa1089200:CDS |
| CCAGAGTTTCTTCTACGAGC+AGG | 0.515799 | 7_3:-2549564 | None:intergenic |
| GTTGGTGAAGAGAAAGGGAA+GGG | 0.515890 | 7_3:-2545049 | None:intergenic |
| AATGGCAGAAAATACCTGTA+AGG | 0.515910 | 7_3:-2546792 | None:intergenic |
| CCATTTGAGTCACTTGGTAC+CGG | 0.517246 | 7_3:-2549627 | None:intergenic |
| TTGGTGAAGAGAAAGGGAAG+GGG | 0.518174 | 7_3:-2545048 | None:intergenic |
| TGGTGAAGAGAAAGGGAAGG+GGG | 0.518932 | 7_3:-2545047 | None:intergenic |
| GAGTTGCATGTAGAGATACT+TGG | 0.520768 | 7_3:-2544776 | None:intergenic |
| TTAAACCTTCACGAATGAAA+AGG | 0.521136 | 7_3:-2548916 | None:intergenic |
| TATTCATTCTTATCTTTAGA+GGG | 0.522333 | 7_3:+2550835 | Msa1089200:three_prime_UTR |
| GCTGGTGGTAAGCCAGAACT+TGG | 0.528434 | 7_3:-2549240 | None:intergenic |
| ATACGAGGTTCCATTGGATC+GGG | 0.530519 | 7_3:-2545126 | None:intergenic |
| TTAGATCCATTTGAGTCACT+TGG | 0.530625 | 7_3:-2549633 | None:intergenic |
| CCGGTACCAAGTGACTCAAA+TGG | 0.531968 | 7_3:+2549627 | Msa1089200:CDS |
| TGAGGAAAGCTACTACAAGT+TGG | 0.532375 | 7_3:+2550639 | Msa1089200:three_prime_UTR |
| ACTCGAATAAACACGTAGCC+AGG | 0.534403 | 7_3:+2544801 | Msa1089200:five_prime_UTR |
| GTGAGTGCTGAGAGACCATC+AGG | 0.536378 | 7_3:+2549267 | Msa1089200:CDS |
| TTGTATAAAGCTGAAGCTGA+AGG | 0.536566 | 7_3:-2550769 | None:intergenic |
| AAGTTGTATAAAGTACTTCA+AGG | 0.537249 | 7_3:+2546166 | Msa1089200:CDS |
| TTGTGCTCCGATGATGTGAT+AGG | 0.538146 | 7_3:-2550408 | None:intergenic |
| GGGGAAGATGGTAGACATGC+TGG | 0.538151 | 7_3:+2549525 | Msa1089200:CDS |
| ATTGGTAACAAGTTCCGTCT+TGG | 0.539261 | 7_3:+2545147 | Msa1089200:CDS |
| TAGGTGTATGCCATTGACTT+CGG | 0.549001 | 7_3:+2546726 | Msa1089200:intron |
| TCTAATTTCTTCCGGCCTAG+TGG | 0.549750 | 7_3:+2550249 | Msa1089200:CDS |
| CCTTAAAACTGTACTCATGC+TGG | 0.552041 | 7_3:+2546418 | Msa1089200:CDS |
| CAAACCAGACAACTTCCTCA+TGG | 0.552695 | 7_3:+2546586 | Msa1089200:CDS |
| GATTGTCTCTCCTCCCCTCA+GGG | 0.553551 | 7_3:-2544901 | None:intergenic |
| TCCATTACTGTCGGTCATTG+CGG | 0.553748 | 7_3:+2548846 | Msa1089200:CDS |
| TTCTACAGCCTTCCATGGCA+GGG | 0.557366 | 7_3:+2548625 | Msa1089200:intron |
| TGCTCCAGGACTACCATCCC+TGG | 0.557499 | 7_3:-2550352 | None:intergenic |
| AGGTATATGCTGATGGGTAG+AGG | 0.560253 | 7_3:-2546772 | None:intergenic |
| AGTTGGTGAAGAGAAAGGGA+AGG | 0.564963 | 7_3:-2545050 | None:intergenic |
| AGATTGGAAATTGAAGGAGT+TGG | 0.567018 | 7_3:-2545067 | None:intergenic |
| AATACGAGGTTCCATTGGAT+CGG | 0.571470 | 7_3:-2545127 | None:intergenic |
| TGAATTTCTTTGAGCACCAG+AGG | 0.572897 | 7_3:-2550385 | None:intergenic |
| CTTACAATGGCACGTGCAGA+AGG | 0.576744 | 7_3:-2549126 | None:intergenic |
| ACCGCAATGACCGACAGTAA+TGG | 0.577382 | 7_3:-2548847 | None:intergenic |
| AAGTACGAAGCGAATTCTGA+GGG | 0.578038 | 7_3:-2548824 | None:intergenic |
| ACAACTTCCTCATGGGTCTG+GGG | 0.578843 | 7_3:+2546594 | Msa1089200:CDS |
| CCATGGCAGGGATTAAAAGC+AGG | 0.580774 | 7_3:+2548637 | Msa1089200:CDS |
| CTTCGTACTTCCATTACTGT+CGG | 0.580895 | 7_3:+2548837 | Msa1089200:CDS |
| CCTGTAAGGTATATGCTGAT+GGG | 0.582308 | 7_3:-2546778 | None:intergenic |
| CCTGCTCGTAGAAGAAACTC+TGG | 0.583504 | 7_3:+2549564 | Msa1089200:CDS |
| GGTATTTCTACAGCCTTCCA+TGG | 0.584276 | 7_3:+2548620 | Msa1089200:intron |
| AAACCAGACAACTTCCTCAT+GGG | 0.585296 | 7_3:+2546587 | Msa1089200:CDS |
| GTGATTCTAAGTCGTCCCTA+CGG | 0.586077 | 7_3:-2548492 | None:intergenic |
| CTGGTATCCCGAATGTGAGA+TGG | 0.591046 | 7_3:+2546303 | Msa1089200:CDS |
| GTCTTGTAGATCCACTAGGC+CGG | 0.591531 | 7_3:-2550260 | None:intergenic |
| TCCTTCGGCGAGATCTATCT+CGG | 0.591939 | 7_3:+2545189 | Msa1089200:CDS |
| TGTATAAAGCTGAAGCTGAA+GGG | 0.592495 | 7_3:-2550768 | None:intergenic |
| ATCCCTGGCAAGAGGAAGAG+AGG | 0.593199 | 7_3:-2550337 | None:intergenic |
| GTTCTTGTAATGGATTTACT+GGG | 0.597182 | 7_3:+2546350 | Msa1089200:CDS |
| ACTCATGCTGGCTGATCAGA+TGG | 0.600494 | 7_3:+2546430 | Msa1089200:CDS |
| TTTATCAGAGCAAAGCCGTA+GGG | 0.600968 | 7_3:+2548477 | Msa1089200:intron |
| AAATTCACCTATCACATCAT+CGG | 0.605560 | 7_3:+2550401 | Msa1089200:CDS |
| AATGGCACGTGCAGAAGGAG+TGG | 0.609634 | 7_3:-2549121 | None:intergenic |
| AAATATTCAGACAAATGAAG+AGG | 0.611556 | 7_3:+2545317 | Msa1089200:CDS |
| TGAGGGGTAGCCACGACACA+AGG | 0.615164 | 7_3:-2548807 | None:intergenic |
| GCCAAAGCAACCCTGAGGGG+AGG | 0.618002 | 7_3:+2544891 | Msa1089200:five_prime_UTR |
| CTTGGTCGCAAAATTGGTAG+CGG | 0.618071 | 7_3:+2545165 | Msa1089200:CDS |
| CCTGAATTTCAATGACGAGA+AGG | 0.618175 | 7_3:+2550503 | Msa1089200:CDS |
| GGACTACCATCCCTGGCAAG+AGG | 0.621909 | 7_3:-2550345 | None:intergenic |
| GAAGTACGAAGCGAATTCTG+AGG | 0.623073 | 7_3:-2548825 | None:intergenic |
| CAAGATACGGTGATCAAGAG+TGG | 0.624843 | 7_3:-2550543 | None:intergenic |
| ATTTATCAGAGCAAAGCCGT+AGG | 0.626916 | 7_3:+2548476 | Msa1089200:intron |
| TCCCTGGCAAGAGGAAGAGA+GGG | 0.628185 | 7_3:-2550336 | None:intergenic |
| TCAGCACTCACAACAGCTGG+TGG | 0.637376 | 7_3:-2549255 | None:intergenic |
| GGATGCCAAAGCAACCCTGA+GGG | 0.640195 | 7_3:+2544887 | Msa1089200:five_prime_UTR |
| CGGAACTTGTTACCAATACG+AGG | 0.640695 | 7_3:-2545141 | None:intergenic |
| AATTCAGGCTCTCAATACCT+CGG | 0.640782 | 7_3:-2550488 | None:intergenic |
| ACTTCCTCATGGGTCTGGGG+AGG | 0.643093 | 7_3:+2546597 | Msa1089200:CDS |
| ACTCGTCTTGTAGATCCACT+AGG | 0.645996 | 7_3:-2550264 | None:intergenic |
| AGTGGATCTACAAGACGAGT+AGG | 0.648511 | 7_3:+2550267 | Msa1089200:CDS |
| TTTACTGGGACCAAGTCTCG+AGG | 0.649748 | 7_3:+2546364 | Msa1089200:CDS |
| CTTTCTCACAAACTGCCGAG+TGG | 0.656272 | 7_3:+2550592 | Msa1089200:three_prime_UTR |
| AAGATGGTAGACATGCTGGT+TGG | 0.660444 | 7_3:+2549529 | Msa1089200:CDS |
| ACCGAGATAGATCTCGCCGA+AGG | 0.660795 | 7_3:-2545190 | None:intergenic |
| AGGGACGACTTAGAATCACT+TGG | 0.661964 | 7_3:+2548496 | Msa1089200:CDS |
| AGCAACTAGATCAAACCACC+TGG | 0.668663 | 7_3:-2544819 | None:intergenic |
| TTTGATTCGTACAACAACTG+AGG | 0.675406 | 7_3:-2546145 | None:intergenic |
| ACAACAGACAACAATCCACT+CGG | 0.678434 | 7_3:-2550607 | None:intergenic |
| TGGATGCCAAAGCAACCCTG+AGG | 0.691305 | 7_3:+2544886 | Msa1089200:five_prime_UTR |
| GATGCCAAAGCAACCCTGAG+GGG | 0.694229 | 7_3:+2544888 | Msa1089200:five_prime_UTR |
| CGAATAAACACGTAGCCAGG+TGG | 0.702448 | 7_3:+2544804 | Msa1089200:five_prime_UTR |
| CTCGCCTCCCCAGACCCATG+AGG | 0.716204 | 7_3:-2546601 | None:intergenic |
| TTGTATAAAGTACTTCAAGG+CGG | 0.746900 | 7_3:+2546169 | Msa1089200:CDS |
| AGTACGAAGCGAATTCTGAG+GGG | 0.755113 | 7_3:-2548823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | - | chr7_3:2547895-2547914 | None:intergenic | 0.0% |
| !! | GAAAATAATAATAATAATGA+TGG | - | chr7_3:2545243-2545262 | None:intergenic | 10.0% |
| !!! | TTTAATTAATTTGAAAATTC+AGG | + | chr7_3:2545291-2545310 | Msa1089200:intron | 10.0% |
| !!! | TGTATTTTAAAATATTGTTT+TGG | + | chr7_3:2548725-2548744 | Msa1089200:intron | 10.0% |
| !!! | TTTTACTTTTGAAATTATTA+AGG | + | chr7_3:2548962-2548981 | Msa1089200:intron | 10.0% |
| !!! | TTAATGTTTTTTTTTTAATG+GGG | + | chr7_3:2549452-2549471 | Msa1089200:intron | 10.0% |
| !!! | TTTTTTTTGAAAAATTAATG+GGG | + | chr7_3:2549486-2549505 | Msa1089200:intron | 10.0% |
| !! | GATTTAGGTAAATAAAAAAT+AGG | - | chr7_3:2546485-2546504 | None:intergenic | 15.0% |
| !! | TATTTACCTAAATCTTAATA+TGG | + | chr7_3:2546491-2546510 | Msa1089200:intron | 15.0% |
| !! | ATTTACCTAAATCTTAATAT+GGG | + | chr7_3:2546492-2546511 | Msa1089200:intron | 15.0% |
| !! | TCACAAAAACTAAATAAAAA+TGG | - | chr7_3:2546813-2546832 | None:intergenic | 15.0% |
| !!! | TTTTAACTATATGAAATTAG+AGG | + | chr7_3:2546870-2546889 | Msa1089200:intron | 15.0% |
| !!! | TAAAAGTATTAGCTTTAATT+CGG | + | chr7_3:2546994-2547013 | Msa1089200:intron | 15.0% |
| !! | AATCAATAGAAAGAAAATTA+AGG | + | chr7_3:2547412-2547431 | Msa1089200:intron | 15.0% |
| !!! | TTCATTTTGACTTAAAAAAA+AGG | - | chr7_3:2547728-2547747 | None:intergenic | 15.0% |
| !! | ATATAAATAAGAAAACAAAG+AGG | - | chr7_3:2548943-2548962 | None:intergenic | 15.0% |
| !! | AAAAGTTATATATCATTCTT+TGG | + | chr7_3:2549965-2549984 | Msa1089200:intron | 15.0% |
| !! | TATATAAAAAAGATGCTTAT+GGG | + | chr7_3:2550678-2550697 | Msa1089200:three_prime_UTR | 15.0% |
| !! | AAAAAGAATGAAAATAAAAG+AGG | - | chr7_3:2550800-2550819 | None:intergenic | 15.0% |
| !!! | TATTTTCATTCTTTTTTTGT+TGG | + | chr7_3:2550804-2550823 | Msa1089200:three_prime_UTR | 15.0% |
| !!! | ATATTGTAAGGGTATAAATT+CGG | - | chr7_3:2546213-2546232 | None:intergenic | 20.0% |
| !! | AGTAAACTAAGATATTGTAA+GGG | - | chr7_3:2546224-2546243 | None:intergenic | 20.0% |
| !! | AAGTAAACTAAGATATTGTA+AGG | - | chr7_3:2546225-2546244 | None:intergenic | 20.0% |
| !!! | ATTTATTCAGTTTTTGTAGT+CGG | + | chr7_3:2546387-2546406 | Msa1089200:CDS | 20.0% |
| !! | TTTACCTAAATCTTAATATG+GGG | + | chr7_3:2546493-2546512 | Msa1089200:intron | 20.0% |
| !!! | ATTCCAAATCATTTTTACAT+AGG | + | chr7_3:2546558-2546577 | Msa1089200:CDS | 20.0% |
| !!! | TTCCAAATCATTTTTACATA+GGG | + | chr7_3:2546559-2546578 | Msa1089200:CDS | 20.0% |
| !!! | TTTTGTGAATTTATGTGTAA+TGG | + | chr7_3:2546825-2546844 | Msa1089200:intron | 20.0% |
| !! | ATATGAAATTAGAGGAAATT+AGG | + | chr7_3:2546878-2546897 | Msa1089200:intron | 20.0% |
| !!! | AAAAGTATTAGCTTTAATTC+GGG | + | chr7_3:2546995-2547014 | Msa1089200:intron | 20.0% |
| !!! | ATATAACTTGTTACTATAGT+GGG | - | chr7_3:2547212-2547231 | None:intergenic | 20.0% |
| !! | GTAACAAGTTATATGAAAAT+TGG | + | chr7_3:2547218-2547237 | Msa1089200:intron | 20.0% |
| !!! | TAATTTAAAAGCAGTTGATA+AGG | - | chr7_3:2548585-2548604 | None:intergenic | 20.0% |
| !! | GTAAATATAATTATACCTGA+TGG | - | chr7_3:2549285-2549304 | None:intergenic | 20.0% |
| !! | CAACTAGATTTATAAAGTAT+TGG | + | chr7_3:2549860-2549879 | Msa1089200:intron | 20.0% |
| !!! | TCATGTTATTTTTGACATTT+TGG | + | chr7_3:2550201-2550220 | Msa1089200:intron | 20.0% |
| !!! | AAAATTTTACCAACAAGATA+CGG | - | chr7_3:2550559-2550578 | None:intergenic | 20.0% |
| !! | GTATATAAAAAAGATGCTTA+TGG | + | chr7_3:2550677-2550696 | Msa1089200:three_prime_UTR | 20.0% |
| !! | ATATAAAAAAGATGCTTATG+GGG | + | chr7_3:2550679-2550698 | Msa1089200:three_prime_UTR | 20.0% |
| !! | ATATTCATTCTTATCTTTAG+AGG | + | chr7_3:2550834-2550853 | Msa1089200:three_prime_UTR | 20.0% |
| !! | TATTCATTCTTATCTTTAGA+GGG | + | chr7_3:2550835-2550854 | Msa1089200:three_prime_UTR | 20.0% |
| ! | GAAAACAAATTACGTTTGTT+TGG | + | chr7_3:2544866-2544885 | Msa1089200:five_prime_UTR | 25.0% |
| ! | AGAAGTGAAAAATGAAGAAA+AGG | - | chr7_3:2545013-2545032 | None:intergenic | 25.0% |
| ! | CTAATAAAACCCTAGAAATT+GGG | - | chr7_3:2545099-2545118 | None:intergenic | 25.0% |
| !!! | ATGATGGATTGAAAAATTGA+AGG | - | chr7_3:2545227-2545246 | None:intergenic | 25.0% |
| ! | AAATATTCAGACAAATGAAG+AGG | + | chr7_3:2545317-2545336 | Msa1089200:CDS | 25.0% |
| ! | TTTATGTGTATGTGTATGTT+TGG | + | chr7_3:2545476-2545495 | Msa1089200:intron | 25.0% |
| !! | TATGTAAAGTGATTTGTGTT+TGG | + | chr7_3:2545536-2545555 | Msa1089200:intron | 25.0% |
| ! | AACAAAACTACATGAATGTT+TGG | - | chr7_3:2545753-2545772 | None:intergenic | 25.0% |
| ! | AGTGTGCAAAATTGAAATAA+AGG | + | chr7_3:2545798-2545817 | Msa1089200:intron | 25.0% |
| !!! | TTTTGTTTGAACTTTTGTAG+AGG | + | chr7_3:2545852-2545871 | Msa1089200:intron | 25.0% |
| !! | AAGTTGTATAAAGTACTTCA+AGG | + | chr7_3:2546166-2546185 | Msa1089200:CDS | 25.0% |
| ! | TCATTAGACTTCATATTACT+CGG | + | chr7_3:2546244-2546263 | Msa1089200:intron | 25.0% |
| !! | TTACTCGGATTAAATGTTTT+CGG | + | chr7_3:2546259-2546278 | Msa1089200:intron | 25.0% |
| ! | ATTTCCCCATATTAAGATTT+AGG | - | chr7_3:2546500-2546519 | None:intergenic | 25.0% |
| ! | CAAAAGAGGTAAATTTGAAA+AGG | - | chr7_3:2546706-2546725 | None:intergenic | 25.0% |
| !! | TTCAAATTTACCTCTTTTGT+AGG | + | chr7_3:2546707-2546726 | Msa1089200:intron | 25.0% |
| !!! | CATATAACTTGTTACTATAG+TGG | - | chr7_3:2547213-2547232 | None:intergenic | 25.0% |
| !!! | GTATTTTTCAACAGAGAAAA+TGG | + | chr7_3:2547434-2547453 | Msa1089200:intron | 25.0% |
| ! | TAAGTCAAAATGAAGAAGAA+AGG | + | chr7_3:2547734-2547753 | Msa1089200:intron | 25.0% |
| ! | AAGTCAAAATGAAGAAGAAA+GGG | + | chr7_3:2547735-2547754 | Msa1089200:intron | 25.0% |
| ! | TAGAAAAAGGCTTATATGTT+GGG | + | chr7_3:2548123-2548142 | Msa1089200:intron | 25.0% |
| ! | AGGAAGATAAAACAACATAA+TGG | - | chr7_3:2548565-2548584 | None:intergenic | 25.0% |
| !! | TTTTAATGTTGTCTGTGTTT+TGG | + | chr7_3:2549015-2549034 | Msa1089200:intron | 25.0% |
| !!! | CGTTACTTGTTATTTTGTTT+AGG | + | chr7_3:2549170-2549189 | Msa1089200:intron | 25.0% |
| ! | GTTAAATTGTCTTACTTAAG+TGG | + | chr7_3:2549192-2549211 | Msa1089200:intron | 25.0% |
| ! | ACTAATAGTACAGTAAGAAA+TGG | - | chr7_3:2549428-2549447 | None:intergenic | 25.0% |
| ! | AAGTTTCCATCATTTACAAT+AGG | - | chr7_3:2549591-2549610 | None:intergenic | 25.0% |
| ! | AAATGGATCTAAAGAAGTTA+TGG | + | chr7_3:2549644-2549663 | Msa1089200:CDS | 25.0% |
| ! | ATGGTGAGTATATTCATTTA+TGG | + | chr7_3:2549663-2549682 | Msa1089200:intron | 25.0% |
| ! | TGGTGAGTATATTCATTTAT+GGG | + | chr7_3:2549664-2549683 | Msa1089200:intron | 25.0% |
| ! | TAAACAGAAAGTAATGAGAA+AGG | - | chr7_3:2549765-2549784 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAAGCAAAAAA+GGG | - | chr7_3:2549835-2549854 | None:intergenic | 25.0% |
| ! | CAAAAATCATGAATTAACCT+CGG | - | chr7_3:2550119-2550138 | None:intergenic | 25.0% |
| ! | AGCTGCAATAAAAAAAATCA+GGG | - | chr7_3:2550176-2550195 | None:intergenic | 25.0% |
| ! | TAGCTGCAATAAAAAAAATC+AGG | - | chr7_3:2550177-2550196 | None:intergenic | 25.0% |
| !!! | ATTTTTGACATTTTGGTCTA+TGG | + | chr7_3:2550208-2550227 | Msa1089200:intron | 25.0% |
| !!! | GCATCTTTTTTATATACTTG+TGG | - | chr7_3:2550674-2550693 | None:intergenic | 25.0% |
| AAAAAAAGAGTTTCTCTCAC+TGG | - | chr7_3:2544971-2544990 | None:intergenic | 30.0% | |
| AATTGGAGATTGGAAATTGA+AGG | - | chr7_3:2545076-2545095 | None:intergenic | 30.0% | |
| CCTAATAAAACCCTAGAAAT+TGG | - | chr7_3:2545100-2545119 | None:intergenic | 30.0% | |
| !!! | CCAATTTCTAGGGTTTTATT+AGG | + | chr7_3:2545097-2545116 | Msa1089200:five_prime_UTR | 30.0% |
| !!! | CAAACATGCAAGTTTTGTTT+TGG | - | chr7_3:2545416-2545435 | None:intergenic | 30.0% |
| AACAAAACTTGCATGTTTGT+TGG | + | chr7_3:2545417-2545436 | Msa1089200:intron | 30.0% | |
| !! | TGTATGTGTATGTTTGGTTT+TGG | + | chr7_3:2545482-2545501 | Msa1089200:intron | 30.0% |
| !!! | GTATGTGTATGTTTGGTTTT+GGG | + | chr7_3:2545483-2545502 | Msa1089200:intron | 30.0% |
| !!! | TATGTGTATGTTTGGTTTTG+GGG | + | chr7_3:2545484-2545503 | Msa1089200:intron | 30.0% |
| ACATTCATGTAAAAGTGAGT+TGG | + | chr7_3:2545561-2545580 | Msa1089200:intron | 30.0% | |
| GCTTCAAGTAGAATCAATTA+TGG | + | chr7_3:2545637-2545656 | Msa1089200:intron | 30.0% | |
| TCAAGTAGAATCAATTATGG+AGG | + | chr7_3:2545640-2545659 | Msa1089200:intron | 30.0% | |
| AAGCCAAAATCAATTCTAGA+GGG | - | chr7_3:2545716-2545735 | None:intergenic | 30.0% | |
| !! | TGAATGTTTGGTTCCATTTT+AGG | - | chr7_3:2545741-2545760 | None:intergenic | 30.0% |
| ! | TGAAATAAAGGTGTGCTTTA+TGG | + | chr7_3:2545810-2545829 | Msa1089200:intron | 30.0% |
| AGAGGAATTGATGTATCTAA+AGG | + | chr7_3:2545870-2545889 | Msa1089200:intron | 30.0% | |
| CGACAAATTAAATTAGACAC+AGG | - | chr7_3:2545928-2545947 | None:intergenic | 30.0% | |
| !! | TTAATTTGTCGCTTGTGTAT+TGG | + | chr7_3:2545937-2545956 | Msa1089200:intron | 30.0% |
| TAACTCTTTCTCATTGCTAT+TGG | + | chr7_3:2546095-2546114 | Msa1089200:intron | 30.0% | |
| ! | TTGTATAAAGTACTTCAAGG+CGG | + | chr7_3:2546169-2546188 | Msa1089200:CDS | 30.0% |
| AGAGTACAATGTTCTTGTAA+TGG | + | chr7_3:2546340-2546359 | Msa1089200:CDS | 30.0% | |
| !! | TGTTCTTGTAATGGATTTAC+TGG | + | chr7_3:2546349-2546368 | Msa1089200:CDS | 30.0% |
| !! | GTTCTTGTAATGGATTTACT+GGG | + | chr7_3:2546350-2546369 | Msa1089200:CDS | 30.0% |
| GTCCCTATGTAAAAATGATT+TGG | - | chr7_3:2546564-2546583 | None:intergenic | 30.0% | |
| ! | GAATCTCTTGTTTACATTGT+TGG | + | chr7_3:2547069-2547088 | Msa1089200:intron | 30.0% |
| AATCGATTAACTACCAAATG+TGG | + | chr7_3:2547150-2547169 | Msa1089200:intron | 30.0% | |
| TGGATAGTCTAATAACTACA+GGG | + | chr7_3:2547469-2547488 | Msa1089200:intron | 30.0% | |
| AACCATTAGAAGAGATTTAG+AGG | + | chr7_3:2548029-2548048 | Msa1089200:intron | 30.0% | |
| ATCCTCTAAATCTCTTCTAA+TGG | - | chr7_3:2548034-2548053 | None:intergenic | 30.0% | |
| ! | TTTTCGACCTAATATGTGAT+AGG | + | chr7_3:2548058-2548077 | Msa1089200:intron | 30.0% |
| TAATATGTGATAGGACTTTG+CGG | + | chr7_3:2548067-2548086 | Msa1089200:intron | 30.0% | |
| GTAGAAAAAGGCTTATATGT+TGG | + | chr7_3:2548122-2548141 | Msa1089200:intron | 30.0% | |
| ! | AGTTCTTATTCTCTCTGAAA+AGG | - | chr7_3:2548320-2548339 | None:intergenic | 30.0% |
| ATGAATACACATCTTGGAAT+TGG | + | chr7_3:2548366-2548385 | Msa1089200:CDS | 30.0% | |
| !! | GTTCTTATGTACTTTTTGAG+AGG | + | chr7_3:2548523-2548542 | Msa1089200:CDS | 30.0% |
| !! | TTATGTACTTTTTGAGAGGA+AGG | + | chr7_3:2548527-2548546 | Msa1089200:CDS | 30.0% |
| GATAAAACAACATAATGGCA+AGG | - | chr7_3:2548560-2548579 | None:intergenic | 30.0% | |
| GAAAGTTTCTACTTCTATTG+AGG | + | chr7_3:2548696-2548715 | Msa1089200:CDS | 30.0% | |
| ! | CTTTTCAGATATGCATAATC+TGG | - | chr7_3:2548884-2548903 | None:intergenic | 30.0% |
| CAGATTATGCATATCTGAAA+AGG | + | chr7_3:2548882-2548901 | Msa1089200:CDS | 30.0% | |
| TTAAACCTTCACGAATGAAA+AGG | - | chr7_3:2548919-2548938 | None:intergenic | 30.0% | |
| ! | TAAGGTCTTTGATAACTAGA+TGG | + | chr7_3:2548980-2548999 | Msa1089200:intron | 30.0% |
| AATCGAAGACATAATCAAAC+TGG | - | chr7_3:2549068-2549087 | None:intergenic | 30.0% | |
| AGTTTGATTATGTCTTCGAT+TGG | + | chr7_3:2549067-2549086 | Msa1089200:CDS | 30.0% | |
| AGATTGCTGATACTTCAAAA+TGG | - | chr7_3:2549094-2549113 | None:intergenic | 30.0% | |
| !! | TATATTTACTTTTACGACCC+TGG | + | chr7_3:2549296-2549315 | Msa1089200:intron | 30.0% |
| ACACCTAAAATAATAGACCA+GGG | - | chr7_3:2549316-2549335 | None:intergenic | 30.0% | |
| TTCTTAGCTTAACAATGTGT+TGG | + | chr7_3:2549349-2549368 | Msa1089200:intron | 30.0% | |
| TAATGGGGAAATTTCTGTTT+AGG | + | chr7_3:2549501-2549520 | Msa1089200:intron | 30.0% | |
| ATCAACGCTGTATTTCAAAA+TGG | + | chr7_3:2549790-2549809 | Msa1089200:intron | 30.0% | |
| CAGAAGAAAAGAAGCAAAAA+AGG | - | chr7_3:2549836-2549855 | None:intergenic | 30.0% | |
| ! | ACTTAGTGTGTTAGTACTTT+TGG | + | chr7_3:2550070-2550089 | Msa1089200:intron | 30.0% |
| ! | CTTAGTGTGTTAGTACTTTT+GGG | + | chr7_3:2550071-2550090 | Msa1089200:intron | 30.0% |
| !! | TGTCTAGTTCTAATTTCTTC+CGG | + | chr7_3:2550241-2550260 | Msa1089200:CDS | 30.0% |
| AAATTCACCTATCACATCAT+CGG | + | chr7_3:2550401-2550420 | Msa1089200:CDS | 30.0% | |
| CAAAGCTTTACCCATAAAAA+AGG | + | chr7_3:2550714-2550733 | Msa1089200:three_prime_UTR | 30.0% | |
| !!! | ACAGAAGAAGCCTTTTTTAT+GGG | - | chr7_3:2550727-2550746 | None:intergenic | 30.0% |
| !!! | AACAGAAGAAGCCTTTTTTA+TGG | - | chr7_3:2550728-2550747 | None:intergenic | 30.0% |
| !!! | CATCTTTTTTACGTTCAAGT+GGG | + | chr7_3:2550867-2550886 | Msa1089200:three_prime_UTR | 30.0% |
| GAAAAATGAAGAAAAGGCGA+GGG | - | chr7_3:2545007-2545026 | None:intergenic | 35.0% | |
| TGAAAAATGAAGAAAAGGCG+AGG | - | chr7_3:2545008-2545027 | None:intergenic | 35.0% | |
| AGATTGGAAATTGAAGGAGT+TGG | - | chr7_3:2545070-2545089 | None:intergenic | 35.0% | |
| AGAAATTGGGAATTGGAGAT+TGG | - | chr7_3:2545086-2545105 | None:intergenic | 35.0% | |
| ATCTCCAATTCCCAATTTCT+AGG | + | chr7_3:2545086-2545105 | Msa1089200:five_prime_UTR | 35.0% | |
| TCTCCAATTCCCAATTTCTA+GGG | + | chr7_3:2545087-2545106 | Msa1089200:five_prime_UTR | 35.0% | |
| AAACCCTAGAAATTGGGAAT+TGG | - | chr7_3:2545093-2545112 | None:intergenic | 35.0% | |
| !!! | TACCCCTCTAGAATTGATTT+TGG | + | chr7_3:2545710-2545729 | Msa1089200:intron | 35.0% |
| ! | AGCCAAAATCAATTCTAGAG+GGG | - | chr7_3:2545715-2545734 | None:intergenic | 35.0% |
| GAAGCCAAAATCAATTCTAG+AGG | - | chr7_3:2545717-2545736 | None:intergenic | 35.0% | |
| !!! | GATTTTGGCTTCTCCTAAAA+TGG | + | chr7_3:2545725-2545744 | Msa1089200:intron | 35.0% |
| !! | ATGTATCTAAAGGTGCTGAT+AGG | + | chr7_3:2545880-2545899 | Msa1089200:intron | 35.0% |
| !! | TATTGGTTCGACAACTCAAA+AGG | + | chr7_3:2545954-2545973 | Msa1089200:intron | 35.0% |
| !! | ATTGGTTCGACAACTCAAAA+GGG | + | chr7_3:2545955-2545974 | Msa1089200:intron | 35.0% |
| ! | AACAACGACGTTGATTGTTT+AGG | + | chr7_3:2546047-2546066 | Msa1089200:intron | 35.0% |
| ! | TTCTCATTGCTATTGGATTC+AGG | + | chr7_3:2546102-2546121 | Msa1089200:intron | 35.0% |
| ! | TTTGATTCGTACAACAACTG+AGG | - | chr7_3:2546148-2546167 | None:intergenic | 35.0% |
| GGGTATAAATTCGGTAAGAT+AGG | - | chr7_3:2546204-2546223 | None:intergenic | 35.0% | |
| ! | TCGGATTAAATGTTTTCGGT+TGG | + | chr7_3:2546263-2546282 | Msa1089200:intron | 35.0% |
| !!! | TTCGGTTGGCTACTTTTATA+TGG | + | chr7_3:2546277-2546296 | Msa1089200:intron | 35.0% |
| !! | CAGCATGAGTACAGTTTTAA+GGG | - | chr7_3:2546420-2546439 | None:intergenic | 35.0% |
| AATCCAAGAGATGACAGAAA+GGG | - | chr7_3:2546675-2546694 | None:intergenic | 35.0% | |
| TCGGTCTTGCTAAAAAATAC+AGG | + | chr7_3:2546745-2546764 | Msa1089200:CDS | 35.0% | |
| CGGTCTTGCTAAAAAATACA+GGG | + | chr7_3:2546746-2546765 | Msa1089200:CDS | 35.0% | |
| AATGGCAGAAAATACCTGTA+AGG | - | chr7_3:2546795-2546814 | None:intergenic | 35.0% | |
| ACTTGCTTCAACATTCAACT+AGG | - | chr7_3:2546851-2546870 | None:intergenic | 35.0% | |
| TGCATGACTTAACTATTCAC+TGG | + | chr7_3:2546958-2546977 | Msa1089200:intron | 35.0% | |
| GCATGACTTAACTATTCACT+GGG | + | chr7_3:2546959-2546978 | Msa1089200:intron | 35.0% | |
| TTAATTCGGGTGATGACATT+AGG | + | chr7_3:2547008-2547027 | Msa1089200:intron | 35.0% | |
| !! | ATTAGGTGGTGCTTTTTGTT+TGG | + | chr7_3:2547025-2547044 | Msa1089200:intron | 35.0% |
| ! | ATCCTTTTTGTCCCAATTGT+GGG | + | chr7_3:2547272-2547291 | Msa1089200:intron | 35.0% |
| GTGGATAGTCTAATAACTAC+AGG | + | chr7_3:2547468-2547487 | Msa1089200:intron | 35.0% | |
| ATAGTCTAATAACTACAGGG+AGG | + | chr7_3:2547472-2547491 | Msa1089200:intron | 35.0% | |
| ! | AGAACAGAGATGAGATTTTG+TGG | - | chr7_3:2547694-2547713 | None:intergenic | 35.0% |
| GATTAGAGATCTAGAGATCT+AGG | + | chr7_3:2547773-2547792 | Msa1089200:intron | 35.0% | |
| GCAAAGTCCTATCACATATT+AGG | - | chr7_3:2548068-2548087 | None:intergenic | 35.0% | |
| ! | CATATAAGCCTTTTTCTACC+AGG | - | chr7_3:2548121-2548140 | None:intergenic | 35.0% |
| !! | CACAACTAAGTTGATTACTG+GGG | - | chr7_3:2548267-2548286 | None:intergenic | 35.0% |
| !! | CCACAACTAAGTTGATTACT+GGG | - | chr7_3:2548268-2548287 | None:intergenic | 35.0% |
| CCAGTAATCAACTTAGTTGT+GGG | + | chr7_3:2548266-2548285 | Msa1089200:intron | 35.0% | |
| AGAGAGAATAAGAACTTGAC+AGG | + | chr7_3:2548324-2548343 | Msa1089200:intron | 35.0% | |
| GCTAGTATGAATACACATCT+TGG | + | chr7_3:2548360-2548379 | Msa1089200:CDS | 35.0% | |
| CTTGCCTTTGTATCTATTGT+TGG | + | chr7_3:2548418-2548437 | Msa1089200:intron | 35.0% | |
| AACGCCAACAATAGATACAA+AGG | - | chr7_3:2548425-2548444 | None:intergenic | 35.0% | |
| ! | GTCTTTGATAACTAGATGGT+CGG | + | chr7_3:2548984-2549003 | Msa1089200:intron | 35.0% |
| ! | TCTTTGATAACTAGATGGTC+GGG | + | chr7_3:2548985-2549004 | Msa1089200:intron | 35.0% |
| ! | TTGTATTCTTTTGTTGCTGC+AGG | + | chr7_3:2549039-2549058 | Msa1089200:intron | 35.0% |
| TTACTTAAGTGGCATATTGC+AGG | + | chr7_3:2549203-2549222 | Msa1089200:intron | 35.0% | |
| TACTTAAGTGGCATATTGCA+GGG | + | chr7_3:2549204-2549223 | Msa1089200:intron | 35.0% | |
| CACACCTAAAATAATAGACC+AGG | - | chr7_3:2549317-2549336 | None:intergenic | 35.0% | |
| !!! | GGTCTATTATTTTAGGTGTG+TGG | + | chr7_3:2549317-2549336 | Msa1089200:intron | 35.0% |
| TCTGGACCTATTGTAAATGA+TGG | + | chr7_3:2549582-2549601 | Msa1089200:CDS | 35.0% | |
| TTAGATCCATTTGAGTCACT+TGG | - | chr7_3:2549636-2549655 | None:intergenic | 35.0% | |
| AGAGATAACTTGGTCATAAG+TGG | - | chr7_3:2549691-2549710 | None:intergenic | 35.0% | |
| GCTTTCTACAAGAGATAACT+TGG | - | chr7_3:2549701-2549720 | None:intergenic | 35.0% | |
| ACAGAAAGTAATGAGAAAGG+TGG | - | chr7_3:2549762-2549781 | None:intergenic | 35.0% | |
| ATGTAGCAAATCTGAAGAAG+CGG | - | chr7_3:2549994-2550013 | None:intergenic | 35.0% | |
| !! | AATTTTGAGTCAACTATCCG+AGG | + | chr7_3:2550471-2550490 | Msa1089200:CDS | 35.0% |
| ! | GTCTGTTGTTCATTTTGTTG+AGG | + | chr7_3:2550621-2550640 | Msa1089200:three_prime_UTR | 35.0% |
| AAAAAAGATGCTTATGGGGT+TGG | + | chr7_3:2550683-2550702 | Msa1089200:three_prime_UTR | 35.0% | |
| ! | TTTATGGGTAAAGCTTTGTC+AGG | - | chr7_3:2550712-2550731 | None:intergenic | 35.0% |
| TGTATAAAGCTGAAGCTGAA+GGG | - | chr7_3:2550771-2550790 | None:intergenic | 35.0% | |
| TTGTATAAAGCTGAAGCTGA+AGG | - | chr7_3:2550772-2550791 | None:intergenic | 35.0% | |
| CCACTTGAACGTAAAAAAGA+TGG | - | chr7_3:2550869-2550888 | None:intergenic | 35.0% | |
| !!! | CCATCTTTTTTACGTTCAAG+TGG | + | chr7_3:2550866-2550885 | Msa1089200:three_prime_UTR | 35.0% |
| GAGTTGCATGTAGAGATACT+TGG | - | chr7_3:2544779-2544798 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGGTGAAGAGAAA+GGG | - | chr7_3:2545057-2545076 | None:intergenic | 40.0% |
| ! | TAGGTTTTTACCCGATCCAA+TGG | + | chr7_3:2545116-2545135 | Msa1089200:exon | 40.0% |
| AATACGAGGTTCCATTGGAT+CGG | - | chr7_3:2545130-2545149 | None:intergenic | 40.0% | |
| TTACCAATACGAGGTTCCAT+TGG | - | chr7_3:2545135-2545154 | None:intergenic | 40.0% | |
| ! | ATTGGTAACAAGTTCCGTCT+TGG | + | chr7_3:2545147-2545166 | Msa1089200:CDS | 40.0% |
| ! | TACCAATTTTGCGACCAAGA+CGG | - | chr7_3:2545164-2545183 | None:intergenic | 40.0% |
| !! | AAAATTGGTAGCGGATCCTT+CGG | + | chr7_3:2545174-2545193 | Msa1089200:CDS | 40.0% |
| ! | TTGGTTCGACAACTCAAAAG+GGG | + | chr7_3:2545956-2545975 | Msa1089200:intron | 40.0% |
| CTGAATAAATCCTCGAGACT+TGG | - | chr7_3:2546377-2546396 | None:intergenic | 40.0% | |
| ! | CCAGCATGAGTACAGTTTTA+AGG | - | chr7_3:2546421-2546440 | None:intergenic | 40.0% |
| CCTTAAAACTGTACTCATGC+TGG | + | chr7_3:2546418-2546437 | Msa1089200:CDS | 40.0% | |
| GGAAAGAGACGAAGCAATAA+AGG | - | chr7_3:2546464-2546483 | None:intergenic | 40.0% | |
| AAACCAGACAACTTCCTCAT+GGG | + | chr7_3:2546587-2546606 | Msa1089200:CDS | 40.0% | |
| TATCCCTTTCTGTCATCTCT+TGG | + | chr7_3:2546669-2546688 | Msa1089200:intron | 40.0% | |
| CAATCCAAGAGATGACAGAA+AGG | - | chr7_3:2546676-2546695 | None:intergenic | 40.0% | |
| ATGGCATACACCTACAAAAG+AGG | - | chr7_3:2546720-2546739 | None:intergenic | 40.0% | |
| !! | TAGGTGTATGCCATTGACTT+CGG | + | chr7_3:2546726-2546745 | Msa1089200:intron | 40.0% |
| TTTAGCAAGACCGAAGTCAA+TGG | - | chr7_3:2546739-2546758 | None:intergenic | 40.0% | |
| CCTGTAAGGTATATGCTGAT+GGG | - | chr7_3:2546781-2546800 | None:intergenic | 40.0% | |
| ACCTGTAAGGTATATGCTGA+TGG | - | chr7_3:2546782-2546801 | None:intergenic | 40.0% | |
| CTCTGTTACACATCCACATT+TGG | - | chr7_3:2547166-2547185 | None:intergenic | 40.0% | |
| GATGTGTAACAGAGAATTGC+TGG | + | chr7_3:2547172-2547191 | Msa1089200:intron | 40.0% | |
| ! | GATCCTTTTTGTCCCAATTG+TGG | + | chr7_3:2547271-2547290 | Msa1089200:intron | 40.0% |
| AGAAACTAGCACCCACAATT+GGG | - | chr7_3:2547286-2547305 | None:intergenic | 40.0% | |
| TAGAAACTAGCACCCACAAT+TGG | - | chr7_3:2547287-2547306 | None:intergenic | 40.0% | |
| TTTCAACAGAGAAAATGGCG+AGG | + | chr7_3:2547439-2547458 | Msa1089200:intron | 40.0% | |
| AACTGTAGGACTGACAATAG+CGG | + | chr7_3:2547503-2547522 | Msa1089200:intron | 40.0% | |
| GTTTCCGCTTTGACAACTAT+GGG | + | chr7_3:2548003-2548022 | Msa1089200:intron | 40.0% | |
| TTGTCCCATAGTTGTCAAAG+CGG | - | chr7_3:2548010-2548029 | None:intergenic | 40.0% | |
| ! | TTGCGGTGTCAATTGATTCA+TGG | + | chr7_3:2548084-2548103 | Msa1089200:intron | 40.0% |
| ! | CTTTTTCTACCAGGTGAGAT+TGG | - | chr7_3:2548112-2548131 | None:intergenic | 40.0% |
| CAATCTCACCTGGTAGAAAA+AGG | + | chr7_3:2548110-2548129 | Msa1089200:intron | 40.0% | |
| CCCAGTAATCAACTTAGTTG+TGG | + | chr7_3:2548265-2548284 | Msa1089200:intron | 40.0% | |
| !! | CCCACAACTAAGTTGATTAC+TGG | - | chr7_3:2548269-2548288 | None:intergenic | 40.0% |
| AGATACAAAGGCAAGTGAGT+TGG | - | chr7_3:2548413-2548432 | None:intergenic | 40.0% | |
| TTGGCGTTTGATTCTGAACT+TGG | + | chr7_3:2548437-2548456 | Msa1089200:intron | 40.0% | |
| TGGCGTTTGATTCTGAACTT+GGG | + | chr7_3:2548438-2548457 | Msa1089200:intron | 40.0% | |
| ATTTATCAGAGCAAAGCCGT+AGG | + | chr7_3:2548476-2548495 | Msa1089200:intron | 40.0% | |
| TTTATCAGAGCAAAGCCGTA+GGG | + | chr7_3:2548477-2548496 | Msa1089200:intron | 40.0% | |
| ! | TTTTGTTAGTCCTTGTGTCG+TGG | + | chr7_3:2548797-2548816 | Msa1089200:intron | 40.0% |
| AAGTACGAAGCGAATTCTGA+GGG | - | chr7_3:2548827-2548846 | None:intergenic | 40.0% | |
| CTTCGTACTTCCATTACTGT+CGG | + | chr7_3:2548837-2548856 | Msa1089200:CDS | 40.0% | |
| ! | CGACCCTGGTCTATTATTTT+AGG | + | chr7_3:2549310-2549329 | Msa1089200:intron | 40.0% |
| TGGGGAAATTTCTGTTTAGG+TGG | + | chr7_3:2549504-2549523 | Msa1089200:intron | 40.0% | |
| GGGGAAATTTCTGTTTAGGT+GGG | + | chr7_3:2549505-2549524 | Msa1089200:intron | 40.0% | |
| GGGAAATTTCTGTTTAGGTG+GGG | + | chr7_3:2549506-2549525 | Msa1089200:intron | 40.0% | |
| ! | CTTGTCTAGACAAAAAGCAC+CGG | + | chr7_3:2549608-2549627 | Msa1089200:CDS | 40.0% |
| ATTAACCTCGGCAAACACAT+AGG | - | chr7_3:2550107-2550126 | None:intergenic | 40.0% | |
| ! | TTTGAGCACCAGAGGTTTTA+AGG | - | chr7_3:2550380-2550399 | None:intergenic | 40.0% |
| TGAATTTCTTTGAGCACCAG+AGG | - | chr7_3:2550388-2550407 | None:intergenic | 40.0% | |
| CACAAAGCAACAACATCTTC+TGG | + | chr7_3:2550426-2550445 | Msa1089200:CDS | 40.0% | |
| AATTCAGGCTCTCAATACCT+CGG | - | chr7_3:2550491-2550510 | None:intergenic | 40.0% | |
| CCTTCTCGTCATTGAAATTC+AGG | - | chr7_3:2550506-2550525 | None:intergenic | 40.0% | |
| CCTGAATTTCAATGACGAGA+AGG | + | chr7_3:2550503-2550522 | Msa1089200:CDS | 40.0% | |
| TCTTGATCACCGTATCTTGT+TGG | + | chr7_3:2550547-2550566 | Msa1089200:three_prime_UTR | 40.0% | |
| ACAACAGACAACAATCCACT+CGG | - | chr7_3:2550610-2550629 | None:intergenic | 40.0% | |
| TGAGGAAAGCTACTACAAGT+TGG | + | chr7_3:2550639-2550658 | Msa1089200:three_prime_UTR | 40.0% | |
| GAGGAAAGCTACTACAAGTT+GGG | + | chr7_3:2550640-2550659 | Msa1089200:three_prime_UTR | 40.0% | |
| GGCTACGTGTTTATTCGAGT+TGG | - | chr7_3:2544801-2544820 | None:intergenic | 45.0% | |
| ACTCGAATAAACACGTAGCC+AGG | + | chr7_3:2544801-2544820 | Msa1089200:five_prime_UTR | 45.0% | |
| AGCAACTAGATCAAACCACC+TGG | - | chr7_3:2544822-2544841 | None:intergenic | 45.0% | |
| TGGTTTGATCTAGTTGCTGC+TGG | + | chr7_3:2544824-2544843 | Msa1089200:five_prime_UTR | 45.0% | |
| GAAAAGGCGAGGGACAAAAT+TGG | - | chr7_3:2544997-2545016 | None:intergenic | 45.0% | |
| TTGGTGAAGAGAAAGGGAAG+GGG | - | chr7_3:2545051-2545070 | None:intergenic | 45.0% | |
| ! | GTTGGTGAAGAGAAAGGGAA+GGG | - | chr7_3:2545052-2545071 | None:intergenic | 45.0% |
| !! | AGTTGGTGAAGAGAAAGGGA+AGG | - | chr7_3:2545053-2545072 | None:intergenic | 45.0% |
| !! | GAAGGAGTTGGTGAAGAGAA+AGG | - | chr7_3:2545058-2545077 | None:intergenic | 45.0% |
| ATACGAGGTTCCATTGGATC+GGG | - | chr7_3:2545129-2545148 | None:intergenic | 45.0% | |
| GATCCAATGGAACCTCGTAT+TGG | + | chr7_3:2545129-2545148 | Msa1089200:exon | 45.0% | |
| !! | CGGAACTTGTTACCAATACG+AGG | - | chr7_3:2545144-2545163 | None:intergenic | 45.0% |
| TTCCGTCTTGGTCGCAAAAT+TGG | + | chr7_3:2545159-2545178 | Msa1089200:CDS | 45.0% | |
| CTTGGTCGCAAAATTGGTAG+CGG | + | chr7_3:2545165-2545184 | Msa1089200:CDS | 45.0% | |
| GGTGTGCTTTATGGAATGTG+TGG | + | chr7_3:2545819-2545838 | Msa1089200:intron | 45.0% | |
| GTGCTTTATGGAATGTGTGG+TGG | + | chr7_3:2545822-2545841 | Msa1089200:intron | 45.0% | |
| CTGATAGGTGTGTGTGACTA+AGG | + | chr7_3:2545895-2545914 | Msa1089200:intron | 45.0% | |
| !! | GACAACTCAAAAGGGGTGTT+TGG | + | chr7_3:2545963-2545982 | Msa1089200:intron | 45.0% |
| GTACAACAACTGAGGATGCT+TGG | - | chr7_3:2546140-2546159 | None:intergenic | 45.0% | |
| !!! | GGCTACTTTTATATGGCAGC+TGG | + | chr7_3:2546284-2546303 | Msa1089200:intron | 45.0% |
| ATCCCGAATGTGAGATGGTT+TGG | + | chr7_3:2546308-2546327 | Msa1089200:CDS | 45.0% | |
| ACGCCAAACCATCTCACATT+CGG | - | chr7_3:2546314-2546333 | None:intergenic | 45.0% | |
| CAAACCAGACAACTTCCTCA+TGG | + | chr7_3:2546586-2546605 | Msa1089200:CDS | 45.0% | |
| ! | AGGTATATGCTGATGGGTAG+AGG | - | chr7_3:2546775-2546794 | None:intergenic | 45.0% |
| CCCATCAGCATATACCTTAC+AGG | + | chr7_3:2546778-2546797 | Msa1089200:CDS | 45.0% | |
| ATTCGGGTGATGACATTAGG+TGG | + | chr7_3:2547011-2547030 | Msa1089200:intron | 45.0% | |
| CACCCACAATTGGGACAAAA+AGG | - | chr7_3:2547277-2547296 | None:intergenic | 45.0% | |
| AGAGAAAATGGCGAGGTCTT+AGG | + | chr7_3:2547446-2547465 | Msa1089200:intron | 45.0% | |
| GGGAGGTGAAAGAAAACTGT+AGG | + | chr7_3:2547489-2547508 | Msa1089200:intron | 45.0% | |
| AGGCAAAAGCGGAACAAAAG+CGG | + | chr7_3:2547601-2547620 | Msa1089200:intron | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | - | chr7_3:2548002-2548021 | None:intergenic | 45.0% | |
| CGTTTCCGCTTTGACAACTA+TGG | + | chr7_3:2548002-2548021 | Msa1089200:intron | 45.0% | |
| GGCGTTTGATTCTGAACTTG+GGG | + | chr7_3:2548439-2548458 | Msa1089200:intron | 45.0% | |
| GTGATTCTAAGTCGTCCCTA+CGG | - | chr7_3:2548495-2548514 | None:intergenic | 45.0% | |
| AGGGACGACTTAGAATCACT+TGG | + | chr7_3:2548496-2548515 | Msa1089200:CDS | 45.0% | |
| ! | GGTATTTCTACAGCCTTCCA+TGG | + | chr7_3:2548620-2548639 | Msa1089200:intron | 45.0% |
| ! | CTTTTAATCCCTGCCATGGA+AGG | - | chr7_3:2548636-2548655 | None:intergenic | 45.0% |
| AGTACGAAGCGAATTCTGAG+GGG | - | chr7_3:2548826-2548845 | None:intergenic | 45.0% | |
| GAAGTACGAAGCGAATTCTG+AGG | - | chr7_3:2548828-2548847 | None:intergenic | 45.0% | |
| TCCATTACTGTCGGTCATTG+CGG | + | chr7_3:2548846-2548865 | Msa1089200:CDS | 45.0% | |
| TTCTGTTTAGGTGGGGAAGA+TGG | + | chr7_3:2549513-2549532 | Msa1089200:intron | 45.0% | |
| AAGATGGTAGACATGCTGGT+TGG | + | chr7_3:2549529-2549548 | Msa1089200:CDS | 45.0% | |
| CCATTTGAGTCACTTGGTAC+CGG | - | chr7_3:2549630-2549649 | None:intergenic | 45.0% | |
| CAATTCTGCACAGACACACA+TGG | - | chr7_3:2549891-2549910 | None:intergenic | 45.0% | |
| TATGTCCTATGTGTTTGCCG+AGG | + | chr7_3:2550099-2550118 | Msa1089200:intron | 45.0% | |
| !! | AGGGTATTGTGACAACAAGC+AGG | - | chr7_3:2550157-2550176 | None:intergenic | 45.0% |
| TCTAATTTCTTCCGGCCTAG+TGG | + | chr7_3:2550249-2550268 | Msa1089200:CDS | 45.0% | |
| ACTCGTCTTGTAGATCCACT+AGG | - | chr7_3:2550267-2550286 | None:intergenic | 45.0% | |
| AGTGGATCTACAAGACGAGT+AGG | + | chr7_3:2550267-2550286 | Msa1089200:CDS | 45.0% | |
| AACAACTGCATCACGACTGT+TGG | - | chr7_3:2550301-2550320 | None:intergenic | 45.0% | |
| TTGTGCTCCGATGATGTGAT+AGG | - | chr7_3:2550411-2550430 | None:intergenic | 45.0% | |
| CAAGATACGGTGATCAAGAG+TGG | - | chr7_3:2550546-2550565 | None:intergenic | 45.0% | |
| !! | AAATTAATTATTTATTTACT+TGG | + | chr7_3:2548599-2548618 | Msa1089200:intron | 5.0% |
| !!! | TTTTAATGTTTTTTTTTTAA+TGG | + | chr7_3:2549450-2549469 | Msa1089200:intron | 5.0% |
| !!! | TTTAATGTTTTTTTTTTAAT+GGG | + | chr7_3:2549451-2549470 | Msa1089200:intron | 5.0% |
| !!! | TTTTTTTTTTGAAAAATTAA+TGG | + | chr7_3:2549484-2549503 | Msa1089200:intron | 5.0% |
| !!! | TTTTTTTTTGAAAAATTAAT+GGG | + | chr7_3:2549485-2549504 | Msa1089200:intron | 5.0% |
| !!! | TTCAAATTTTATTATTTTTT+TGG | - | chr7_3:2550906-2550925 | None:intergenic | 5.0% |
| CGAATAAACACGTAGCCAGG+TGG | + | chr7_3:2544804-2544823 | Msa1089200:five_prime_UTR | 50.0% | |
| AAGGGAAGGGGGAAAAGGAA+CGG | - | chr7_3:2545039-2545058 | None:intergenic | 50.0% | |
| AGAGAAAGGGAAGGGGGAAA+AGG | - | chr7_3:2545044-2545063 | None:intergenic | 50.0% | |
| TGGTGAAGAGAAAGGGAAGG+GGG | - | chr7_3:2545050-2545069 | None:intergenic | 50.0% | |
| TCCTTCGGCGAGATCTATCT+CGG | + | chr7_3:2545189-2545208 | Msa1089200:CDS | 50.0% | |
| CTGGTATCCCGAATGTGAGA+TGG | + | chr7_3:2546303-2546322 | Msa1089200:CDS | 50.0% | |
| CGCCAAACCATCTCACATTC+GGG | - | chr7_3:2546313-2546332 | None:intergenic | 50.0% | |
| ! | GTGAGATGGTTTGGCGTAGA+AGG | + | chr7_3:2546317-2546336 | Msa1089200:CDS | 50.0% |
| TTTACTGGGACCAAGTCTCG+AGG | + | chr7_3:2546364-2546383 | Msa1089200:CDS | 50.0% | |
| ! | ACTCATGCTGGCTGATCAGA+TGG | + | chr7_3:2546430-2546449 | Msa1089200:CDS | 50.0% |
| ! | ATGCTGGCTGATCAGATGGT+AGG | + | chr7_3:2546434-2546453 | Msa1089200:intron | 50.0% |
| AGACCCATGAGGAAGTTGTC+TGG | - | chr7_3:2546593-2546612 | None:intergenic | 50.0% | |
| AGACAACTTCCTCATGGGTC+TGG | + | chr7_3:2546592-2546611 | Msa1089200:CDS | 50.0% | |
| GACAACTTCCTCATGGGTCT+GGG | + | chr7_3:2546593-2546612 | Msa1089200:CDS | 50.0% | |
| ACAACTTCCTCATGGGTCTG+GGG | + | chr7_3:2546594-2546613 | Msa1089200:CDS | 50.0% | |
| GAAAATGGCGAGGTCTTAGG+TGG | + | chr7_3:2547449-2547468 | Msa1089200:intron | 50.0% | |
| CTGACAATAGCGGTCTAACG+CGG | + | chr7_3:2547513-2547532 | Msa1089200:intron | 50.0% | |
| GGCAAAAGCGGAACAAAAGC+GGG | + | chr7_3:2547602-2547621 | Msa1089200:intron | 50.0% | |
| TTCATGGAGCCAATCTCACC+TGG | + | chr7_3:2548100-2548119 | Msa1089200:intron | 50.0% | |
| TTTCTACAGCCTTCCATGGC+AGG | + | chr7_3:2548624-2548643 | Msa1089200:intron | 50.0% | |
| TTCTACAGCCTTCCATGGCA+GGG | + | chr7_3:2548625-2548644 | Msa1089200:intron | 50.0% | |
| !! | CCTGCTTTTAATCCCTGCCA+TGG | - | chr7_3:2548640-2548659 | None:intergenic | 50.0% |
| CCATGGCAGGGATTAAAAGC+AGG | + | chr7_3:2548637-2548656 | Msa1089200:CDS | 50.0% | |
| ACCGCAATGACCGACAGTAA+TGG | - | chr7_3:2548850-2548869 | None:intergenic | 50.0% | |
| ! | CGCGACCTTTTCATTCGTGA+AGG | + | chr7_3:2548911-2548930 | Msa1089200:CDS | 50.0% |
| CTTACAATGGCACGTGCAGA+AGG | - | chr7_3:2549129-2549148 | None:intergenic | 50.0% | |
| ! | TCTGCACGTGCCATTGTAAG+TGG | + | chr7_3:2549129-2549148 | Msa1089200:intron | 50.0% |
| TAGCACACCGCCACTTACAA+TGG | - | chr7_3:2549142-2549161 | None:intergenic | 50.0% | |
| AGTGGCATATTGCAGGGTTC+TGG | + | chr7_3:2549210-2549229 | Msa1089200:intron | 50.0% | |
| ! | ATATTGCAGGGTTCTGGTGC+TGG | + | chr7_3:2549216-2549235 | Msa1089200:intron | 50.0% |
| ! | TATTGCAGGGTTCTGGTGCT+GGG | + | chr7_3:2549217-2549236 | Msa1089200:intron | 50.0% |
| CCAGAGTTTCTTCTACGAGC+AGG | - | chr7_3:2549567-2549586 | None:intergenic | 50.0% | |
| CCTGCTCGTAGAAGAAACTC+TGG | + | chr7_3:2549564-2549583 | Msa1089200:CDS | 50.0% | |
| CCGGTACCAAGTGACTCAAA+TGG | + | chr7_3:2549627-2549646 | Msa1089200:CDS | 50.0% | |
| GTCTTGTAGATCCACTAGGC+CGG | - | chr7_3:2550263-2550282 | None:intergenic | 50.0% | |
| !!! | GAGGTTTTAAGGAGTGCTCC+AGG | - | chr7_3:2550369-2550388 | None:intergenic | 50.0% |
| ! | GGAGCACTCCTTAAAACCTC+TGG | + | chr7_3:2550369-2550388 | Msa1089200:CDS | 50.0% |
| CTTTCTCACAAACTGCCGAG+TGG | + | chr7_3:2550592-2550611 | Msa1089200:three_prime_UTR | 50.0% | |
| TGGATGCCAAAGCAACCCTG+AGG | + | chr7_3:2544886-2544905 | Msa1089200:five_prime_UTR | 55.0% | |
| GGATGCCAAAGCAACCCTGA+GGG | + | chr7_3:2544887-2544906 | Msa1089200:five_prime_UTR | 55.0% | |
| GATGCCAAAGCAACCCTGAG+GGG | + | chr7_3:2544888-2544907 | Msa1089200:five_prime_UTR | 55.0% | |
| GATTGTCTCTCCTCCCCTCA+GGG | - | chr7_3:2544904-2544923 | None:intergenic | 55.0% | |
| AGATTGTCTCTCCTCCCCTC+AGG | - | chr7_3:2544905-2544924 | None:intergenic | 55.0% | |
| AGGGAAGGGGGAAAAGGAAC+GGG | - | chr7_3:2545038-2545057 | None:intergenic | 55.0% | |
| ACCGAGATAGATCTCGCCGA+AGG | - | chr7_3:2545193-2545212 | None:intergenic | 55.0% | |
| ! | CTTTTGCCTAACGCGCGACT+CGG | - | chr7_3:2547590-2547609 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGCAAAAG+CGG | + | chr7_3:2547590-2547609 | Msa1089200:intron | 55.0% | |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | chr7_3:2547961-2547980 | Msa1089200:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | chr7_3:2547962-2547981 | Msa1089200:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | chr7_3:2547971-2547990 | None:intergenic | 55.0% | |
| AATGGCACGTGCAGAAGGAG+TGG | - | chr7_3:2549124-2549143 | None:intergenic | 55.0% | |
| ! | GCACGTGCCATTGTAAGTGG+CGG | + | chr7_3:2549132-2549151 | Msa1089200:intron | 55.0% |
| GTAAGTGGCGGTGTGCTATC+TGG | + | chr7_3:2549144-2549163 | Msa1089200:intron | 55.0% | |
| GCTGGTGGTAAGCCAGAACT+TGG | - | chr7_3:2549243-2549262 | None:intergenic | 55.0% | |
| TCAGCACTCACAACAGCTGG+TGG | - | chr7_3:2549258-2549277 | None:intergenic | 55.0% | |
| CTCTCAGCACTCACAACAGC+TGG | - | chr7_3:2549261-2549280 | None:intergenic | 55.0% | |
| !! | GTGAGTGCTGAGAGACCATC+AGG | + | chr7_3:2549267-2549286 | Msa1089200:CDS | 55.0% |
| GGGGAAGATGGTAGACATGC+TGG | + | chr7_3:2549525-2549544 | Msa1089200:CDS | 55.0% | |
| AACCCTCTCTTCCTCTTGCC+AGG | + | chr7_3:2550334-2550353 | Msa1089200:CDS | 55.0% | |
| ACCCTCTCTTCCTCTTGCCA+GGG | + | chr7_3:2550335-2550354 | Msa1089200:CDS | 55.0% | |
| TCCCTGGCAAGAGGAAGAGA+GGG | - | chr7_3:2550339-2550358 | None:intergenic | 55.0% | |
| ATCCCTGGCAAGAGGAAGAG+AGG | - | chr7_3:2550340-2550359 | None:intergenic | 55.0% | |
| TCTCTTCCTCTTGCCAGGGA+TGG | + | chr7_3:2550339-2550358 | Msa1089200:CDS | 55.0% | |
| TCCTCCCCTCAGGGTTGCTT+TGG | - | chr7_3:2544895-2544914 | None:intergenic | 60.0% | |
| ACTTCCTCATGGGTCTGGGG+AGG | + | chr7_3:2546597-2546616 | Msa1089200:CDS | 60.0% | |
| GGAACAAAAGCGGGTCAGCG+CGG | + | chr7_3:2547611-2547630 | Msa1089200:intron | 60.0% | |
| GAACAAAAGCGGGTCAGCGC+GGG | + | chr7_3:2547612-2547631 | Msa1089200:intron | 60.0% | |
| GGGCAAAAAGCGGGTCAACG+CGG | + | chr7_3:2547632-2547651 | Msa1089200:intron | 60.0% | |
| GGCAAAAAGCGGGTCAACGC+GGG | + | chr7_3:2547633-2547652 | Msa1089200:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | chr7_3:2547643-2547662 | Msa1089200:intron | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | + | chr7_3:2547644-2547663 | Msa1089200:intron | 60.0% | |
| ! | GCGGGCGCTTTTACATGACG+CGG | - | chr7_3:2547929-2547948 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTAAG+CGG | - | chr7_3:2547959-2547978 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | chr7_3:2547966-2547985 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | chr7_3:2547963-2547982 | Msa1089200:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | chr7_3:2547966-2547985 | Msa1089200:intron | 60.0% |
| TGAGGGGTAGCCACGACACA+AGG | - | chr7_3:2548810-2548829 | None:intergenic | 60.0% | |
| ! | TCTGGTGCTGGGCCAAGTTC+TGG | + | chr7_3:2549228-2549247 | Msa1089200:CDS | 60.0% |
| GGACTACCATCCCTGGCAAG+AGG | - | chr7_3:2550348-2550367 | None:intergenic | 60.0% | |
| CTTGCCAGGGATGGTAGTCC+TGG | + | chr7_3:2550348-2550367 | Msa1089200:CDS | 60.0% | |
| TGCTCCAGGACTACCATCCC+TGG | - | chr7_3:2550355-2550374 | None:intergenic | 60.0% | |
| GCCAAAGCAACCCTGAGGGG+AGG | + | chr7_3:2544891-2544910 | Msa1089200:five_prime_UTR | 65.0% | |
| GGGTCAGCGCGGGCAAAAAG+CGG | + | chr7_3:2547622-2547641 | Msa1089200:intron | 65.0% | |
| GGTCAGCGCGGGCAAAAAGC+GGG | + | chr7_3:2547623-2547642 | Msa1089200:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | - | chr7_3:2547958-2547977 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | - | chr7_3:2547997-2548016 | None:intergenic | 65.0% | |
| CTCGCCTCCCCAGACCCATG+AGG | - | chr7_3:2546604-2546623 | None:intergenic | 70.0% | |
| GGTCTAACGCGGCGCGATCG+CGG | + | chr7_3:2547524-2547543 | Msa1089200:intron | 70.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | - | chr7_3:2547570-2547589 | None:intergenic | 70.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | + | chr7_3:2547581-2547600 | Msa1089200:intron | 70.0% | |
| ! | AACGCGGCGCGATCGCGGCG+CGG | + | chr7_3:2547529-2547548 | Msa1089200:intron | 80.0% |
| ! | GCGGTAAGCGGGCGCGACGC+GGG | - | chr7_3:2547947-2547966 | None:intergenic | 80.0% |
| ! | CGCGGTAAGCGGGCGCGACG+CGG | - | chr7_3:2547948-2547967 | None:intergenic | 80.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | - | chr7_3:2547992-2548011 | None:intergenic | 80.0% |
| ! | GGCGCGATCGCGGCGCGGAG+CGG | + | chr7_3:2547534-2547553 | Msa1089200:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2544776 | 2550954 | 2544776 | ID=Msa1089200;Name=Msa1089200 |
| chr7_3 | mRNA | 2544776 | 2550954 | 2544776 | ID=Msa1089200-mRNA-1;Parent=Msa1089200;Name=Msa1089200-mRNA-1;_AED=0.15;_eAED=0.15;_QI=359|1|1|1|1|1|14|418|475 |
| chr7_3 | exon | 2544776 | 2545210 | 2544776 | ID=Msa1089200-mRNA-1:exon:1063;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2545313 | 2545353 | 2545313 | ID=Msa1089200-mRNA-1:exon:1064;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2546124 | 2546193 | 2546124 | ID=Msa1089200-mRNA-1:exon:1065;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2546303 | 2546451 | 2546303 | ID=Msa1089200-mRNA-1:exon:1066;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2546536 | 2546631 | 2546536 | ID=Msa1089200-mRNA-1:exon:1067;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2546729 | 2546799 | 2546729 | ID=Msa1089200-mRNA-1:exon:1068;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2548326 | 2548387 | 2548326 | ID=Msa1089200-mRNA-1:exon:1069;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2548485 | 2548548 | 2548485 | ID=Msa1089200-mRNA-1:exon:1070;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2548633 | 2548717 | 2548633 | ID=Msa1089200-mRNA-1:exon:1071;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2548806 | 2548932 | 2548806 | ID=Msa1089200-mRNA-1:exon:1072;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2549061 | 2549143 | 2549061 | ID=Msa1089200-mRNA-1:exon:1073;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2549225 | 2549288 | 2549225 | ID=Msa1089200-mRNA-1:exon:1074;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2549523 | 2549665 | 2549523 | ID=Msa1089200-mRNA-1:exon:1075;Parent=Msa1089200-mRNA-1 |
| chr7_3 | exon | 2550240 | 2550954 | 2550240 | ID=Msa1089200-mRNA-1:exon:1076;Parent=Msa1089200-mRNA-1 |
| chr7_3 | five_prime_UTR | 2544776 | 2545134 | 2544776 | ID=Msa1089200-mRNA-1:five_prime_utr;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2545135 | 2545210 | 2545135 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2545313 | 2545353 | 2545313 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2546124 | 2546193 | 2546124 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2546303 | 2546451 | 2546303 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2546536 | 2546631 | 2546536 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2546729 | 2546799 | 2546729 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2548326 | 2548387 | 2548326 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2548485 | 2548548 | 2548485 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2548633 | 2548717 | 2548633 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2548806 | 2548932 | 2548806 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2549061 | 2549143 | 2549061 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2549225 | 2549288 | 2549225 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2549523 | 2549665 | 2549523 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | CDS | 2550240 | 2550536 | 2550240 | ID=Msa1089200-mRNA-1:cds;Parent=Msa1089200-mRNA-1 |
| chr7_3 | three_prime_UTR | 2550537 | 2550954 | 2550537 | ID=Msa1089200-mRNA-1:three_prime_utr;Parent=Msa1089200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
