Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364090 | XP_003597565.1 | 99.789 | 475 | 1 | 0 | 1 | 475 | 1 | 475 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364090 | sp|Q9CAI5|CKL2_ARATH | 78.038 | 469 | 98 | 4 | 1 | 468 | 1 | 465 | 0.0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364090 | G7IS36 | 99.789 | 475 | 1 | 0 | 1 | 475 | 1 | 475 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0224120 | Msa1364090 | 0.968610 | 6.374658e-129 | -8.615850e-47 |
| Msa1089200 | Msa1364090 | 0.986206 | 5.068834e-166 | -8.615850e-47 |
| Msa0265260 | Msa1364090 | 0.980711 | 7.437924e-151 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364090 | MtrunA17_Chr2g0329981 | 99.789 | 475 | 1 | 0 | 1 | 475 | 1 | 475 | 0.0 | 979 |
| Msa1364090 | MtrunA17_Chr8g0342821 | 83.229 | 477 | 75 | 5 | 1 | 475 | 1 | 474 | 0.0 | 808 |
| Msa1364090 | MtrunA17_Chr4g0071031 | 75.681 | 477 | 91 | 5 | 1 | 475 | 1 | 454 | 0.0 | 706 |
| Msa1364090 | MtrunA17_Chr2g0299661 | 69.787 | 470 | 138 | 3 | 1 | 470 | 1 | 466 | 0.0 | 677 |
| Msa1364090 | MtrunA17_Chr1g0183631 | 60.842 | 475 | 156 | 9 | 1 | 468 | 1 | 452 | 0.0 | 554 |
| Msa1364090 | MtrunA17_Chr7g0261501 | 73.639 | 349 | 90 | 1 | 1 | 349 | 1 | 347 | 0.0 | 550 |
| Msa1364090 | MtrunA17_Chr1g0166821 | 74.432 | 352 | 80 | 3 | 1 | 349 | 2 | 346 | 0.0 | 547 |
| Msa1364090 | MtrunA17_Chr1g0187571 | 69.474 | 380 | 109 | 3 | 1 | 380 | 2 | 374 | 0.0 | 536 |
| Msa1364090 | MtrunA17_Chr6g0486611 | 63.007 | 419 | 139 | 7 | 1 | 411 | 1 | 411 | 0.0 | 516 |
| Msa1364090 | MtrunA17_Chr8g0390211 | 63.706 | 394 | 132 | 5 | 1 | 392 | 1 | 385 | 9.63e-180 | 509 |
| Msa1364090 | MtrunA17_Chr3g0140071 | 66.667 | 342 | 107 | 2 | 1 | 342 | 1 | 335 | 4.31e-168 | 480 |
| Msa1364090 | MtrunA17_Chr1g0146151 | 66.972 | 327 | 107 | 1 | 1 | 327 | 1 | 326 | 1.93e-165 | 473 |
| Msa1364090 | MtrunA17_Chr1g0167261 | 69.159 | 321 | 95 | 3 | 1 | 317 | 2 | 322 | 4.99e-164 | 467 |
| Msa1364090 | MtrunA17_Chr7g0214531 | 38.710 | 279 | 154 | 5 | 9 | 273 | 37 | 312 | 5.44e-60 | 207 |
| Msa1364090 | MtrunA17_Chr3g0140431 | 38.828 | 273 | 156 | 5 | 9 | 273 | 38 | 307 | 8.12e-59 | 203 |
| Msa1364090 | MtrunA17_Chr1g0146301 | 38.462 | 273 | 157 | 5 | 9 | 273 | 124 | 393 | 2.99e-58 | 204 |
| Msa1364090 | MtrunA17_Chr1g0213321 | 37.770 | 278 | 161 | 5 | 9 | 277 | 119 | 393 | 1.44e-57 | 201 |
| Msa1364090 | MtrunA17_Chr7g0253211 | 38.062 | 289 | 161 | 6 | 4 | 277 | 317 | 602 | 2.82e-56 | 201 |
| Msa1364090 | MtrunA17_Chr8g0340491 | 36.879 | 282 | 156 | 7 | 9 | 273 | 128 | 404 | 2.97e-52 | 187 |
| Msa1364090 | MtrunA17_Chr5g0405421 | 26.957 | 230 | 151 | 7 | 2 | 223 | 92 | 312 | 4.22e-13 | 71.6 |
| Msa1364090 | MtrunA17_Chr3g0107011 | 27.917 | 240 | 118 | 11 | 1 | 214 | 5 | 215 | 1.35e-11 | 66.6 |
| Msa1364090 | MtrunA17_Chr7g0267751 | 27.602 | 221 | 128 | 9 | 9 | 215 | 135 | 337 | 1.83e-11 | 66.2 |
| Msa1364090 | MtrunA17_Chr7g0272841 | 24.781 | 343 | 186 | 13 | 8 | 324 | 67 | 363 | 2.30e-11 | 66.2 |
| Msa1364090 | MtrunA17_Chr8g0346071 | 30.942 | 223 | 122 | 13 | 4 | 213 | 13 | 216 | 7.08e-11 | 64.3 |
| Msa1364090 | MtrunA17_Chr4g0072831 | 32.258 | 155 | 81 | 7 | 1 | 153 | 2 | 134 | 8.62e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364090 | AT1G72710.1 | 78.038 | 469 | 98 | 4 | 1 | 468 | 1 | 465 | 0.0 | 738 |
| Msa1364090 | AT4G26100.1 | 71.550 | 471 | 109 | 5 | 1 | 471 | 1 | 446 | 0.0 | 677 |
| Msa1364090 | AT5G57015.1 | 69.538 | 476 | 102 | 6 | 1 | 475 | 1 | 434 | 0.0 | 664 |
| Msa1364090 | AT2G19470.1 | 82.569 | 327 | 57 | 0 | 1 | 327 | 1 | 327 | 0.0 | 590 |
| Msa1364090 | AT3G23340.1 | 73.371 | 353 | 83 | 3 | 1 | 349 | 1 | 346 | 0.0 | 545 |
| Msa1364090 | AT5G44100.1 | 81.818 | 297 | 54 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
| Msa1364090 | AT5G44100.2 | 81.818 | 297 | 54 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
| Msa1364090 | AT1G03930.1 | 81.481 | 297 | 55 | 0 | 1 | 297 | 1 | 297 | 0.0 | 541 |
| Msa1364090 | AT4G14340.1 | 65.625 | 416 | 120 | 7 | 1 | 411 | 7 | 404 | 0.0 | 539 |
| Msa1364090 | AT4G28540.1 | 60.131 | 459 | 164 | 6 | 1 | 449 | 5 | 454 | 0.0 | 530 |
| Msa1364090 | AT5G43320.1 | 64.455 | 422 | 119 | 6 | 1 | 406 | 1 | 407 | 0.0 | 530 |
| Msa1364090 | AT1G04440.1 | 70.286 | 350 | 103 | 1 | 1 | 349 | 1 | 350 | 0.0 | 525 |
| Msa1364090 | AT4G14340.2 | 74.775 | 333 | 75 | 3 | 1 | 330 | 7 | 333 | 0.0 | 525 |
| Msa1364090 | AT5G43320.2 | 73.780 | 328 | 84 | 1 | 1 | 328 | 1 | 326 | 0.0 | 513 |
| Msa1364090 | AT5G43320.3 | 73.780 | 328 | 84 | 1 | 1 | 328 | 1 | 326 | 0.0 | 513 |
| Msa1364090 | AT3G23340.2 | 72.973 | 333 | 79 | 3 | 21 | 349 | 7 | 332 | 3.78e-180 | 511 |
| Msa1364090 | AT4G28860.2 | 68.272 | 353 | 106 | 4 | 1 | 352 | 1 | 348 | 4.55e-178 | 504 |
| Msa1364090 | AT4G28880.3 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1364090 | AT4G28880.2 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1364090 | AT4G28880.1 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1364090 | AT4G28880.4 | 72.611 | 314 | 86 | 0 | 1 | 314 | 1 | 314 | 4.98e-178 | 505 |
| Msa1364090 | AT4G28860.1 | 74.351 | 308 | 79 | 0 | 1 | 308 | 1 | 308 | 1.14e-177 | 504 |
| Msa1364090 | AT4G08800.1 | 70.164 | 305 | 59 | 2 | 1 | 305 | 1 | 273 | 3.36e-158 | 450 |
| Msa1364090 | AT2G25760.2 | 39.721 | 287 | 156 | 5 | 4 | 273 | 100 | 386 | 1.46e-63 | 218 |
| Msa1364090 | AT2G25760.1 | 39.024 | 287 | 155 | 6 | 4 | 273 | 100 | 383 | 1.72e-60 | 210 |
| Msa1364090 | AT3G03940.1 | 37.716 | 289 | 162 | 6 | 4 | 277 | 133 | 418 | 4.10e-57 | 201 |
| Msa1364090 | AT5G18190.2 | 37.370 | 289 | 163 | 6 | 4 | 277 | 123 | 408 | 1.54e-56 | 199 |
| Msa1364090 | AT5G18190.1 | 37.370 | 289 | 163 | 6 | 4 | 277 | 123 | 408 | 1.54e-56 | 199 |
| Msa1364090 | AT3G13670.1 | 36.396 | 283 | 163 | 5 | 9 | 277 | 137 | 416 | 9.09e-56 | 197 |
| Msa1364090 | AT2G17890.1 | 26.667 | 225 | 148 | 8 | 7 | 223 | 106 | 321 | 5.02e-13 | 71.6 |
| Msa1364090 | AT3G06030.1 | 28.054 | 221 | 130 | 8 | 8 | 213 | 67 | 273 | 3.10e-12 | 69.3 |
| Msa1364090 | AT3G50530.1 | 26.271 | 236 | 133 | 10 | 5 | 219 | 144 | 359 | 1.09e-11 | 67.4 |
| Msa1364090 | AT4G36070.1 | 26.244 | 221 | 146 | 7 | 7 | 219 | 69 | 280 | 1.29e-11 | 67.0 |
| Msa1364090 | AT4G36070.2 | 26.244 | 221 | 146 | 7 | 7 | 219 | 69 | 280 | 1.41e-11 | 67.0 |
| Msa1364090 | AT5G21326.1 | 27.311 | 238 | 121 | 11 | 1 | 214 | 6 | 215 | 1.93e-11 | 66.2 |
| Msa1364090 | AT1G09000.1 | 27.313 | 227 | 136 | 8 | 1 | 213 | 63 | 274 | 2.24e-11 | 66.6 |
| Msa1364090 | AT1G09000.2 | 27.313 | 227 | 136 | 8 | 1 | 213 | 63 | 274 | 2.69e-11 | 66.2 |
Find 150 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATAAAACCCTAGAAAT+TGG | 0.164625 | tig0018106:-169065 | None:intergenic |
| TCTGGTGCTGGGCCAAGTTC+TGG | 0.217410 | tig0018106:+173206 | Msa1364090:CDS |
| TGTTCTTGTAATGGATTTAC+TGG | 0.238900 | tig0018106:+170327 | Msa1364090:CDS |
| ATCTCCAATTCCCAATTTCT+AGG | 0.245279 | tig0018106:+169054 | Msa1364090:five_prime_UTR |
| ATATTGCAGGGTTCTGGTGC+TGG | 0.265600 | tig0018106:+173194 | Msa1364090:intron |
| CCTTCTCGTCATTGAAATTC+AGG | 0.271965 | tig0018106:-174480 | None:intergenic |
| TTCCGTCTTGGTCGCAAAAT+TGG | 0.279587 | tig0018106:+169127 | Msa1364090:CDS |
| TCCTCCCCTCAGGGTTGCTT+TGG | 0.290501 | tig0018106:-168854 | None:intergenic |
| GAAAACAAATTACGTTTGTT+TGG | 0.300456 | tig0018106:+168828 | Msa1364090:five_prime_UTR |
| AGTGGCATATTGCAGGGTTC+TGG | 0.307259 | tig0018106:+173188 | Msa1364090:intron |
| GTGAGATGGTTTGGCGTAGA+AGG | 0.320994 | tig0018106:+170295 | Msa1364090:CDS |
| CCCATCAGCATATACCTTAC+AGG | 0.322211 | tig0018106:+170756 | Msa1364090:CDS |
| ATATTCATTCTTATCTTTAG+AGG | 0.335491 | tig0018106:+174811 | Msa1364090:three_prime_UTR |
| TGTCTAGTTCTAATTTCTTC+CGG | 0.335964 | tig0018106:+174218 | Msa1364090:CDS |
| AACCCTCTCTTCCTCTTGCC+AGG | 0.341730 | tig0018106:+174311 | Msa1364090:CDS |
| GAAAAGGCGAGGGACAAAAT+TGG | 0.377134 | tig0018106:-168962 | None:intergenic |
| CGCCAAACCATCTCACATTC+GGG | 0.397128 | tig0018106:-170288 | None:intergenic |
| AAGTTTCCATCATTTACAAT+AGG | 0.399390 | tig0018106:-173565 | None:intergenic |
| TGGTTTGATCTAGTTGCTGC+TGG | 0.401251 | tig0018106:+168786 | Msa1364090:five_prime_UTR |
| ATGAATACACATCTTGGAAT+TGG | 0.405893 | tig0018106:+172344 | Msa1364090:CDS |
| AATCGAAGACATAATCAAAC+TGG | 0.405895 | tig0018106:-173043 | None:intergenic |
| AAACCCTAGAAATTGGGAAT+TGG | 0.406920 | tig0018106:-169058 | None:intergenic |
| CTTGCCAGGGATGGTAGTCC+TGG | 0.411315 | tig0018106:+174325 | Msa1364090:CDS |
| AGAAATTGGGAATTGGAGAT+TGG | 0.411923 | tig0018106:-169051 | None:intergenic |
| AGATTGCTGATACTTCAAAA+TGG | 0.414687 | tig0018106:-173069 | None:intergenic |
| AGACAACTTCCTCATGGGTC+TGG | 0.419334 | tig0018106:+170570 | Msa1364090:CDS |
| AGATTGTCTCTCCTCCCCTC+AGG | 0.425290 | tig0018106:-168864 | None:intergenic |
| CTAATAAAACCCTAGAAATT+GGG | 0.429752 | tig0018106:-169064 | None:intergenic |
| CACAAAGCAACAACATCTTC+TGG | 0.430594 | tig0018106:+174403 | Msa1364090:CDS |
| TATTGCAGGGTTCTGGTGCT+GGG | 0.431101 | tig0018106:+173195 | Msa1364090:intron |
| ACGCCAAACCATCTCACATT+CGG | 0.433060 | tig0018106:-170289 | None:intergenic |
| TTCTGTTTAGGTGGGGAAGA+TGG | 0.440368 | tig0018106:+173490 | Msa1364090:intron |
| AGAGTACAATGTTCTTGTAA+TGG | 0.440882 | tig0018106:+170318 | Msa1364090:CDS |
| CAGATTATGCATATCTGAAA+AGG | 0.441444 | tig0018106:+172860 | Msa1364090:CDS |
| TTTATGGGTAAAGCTTTGTC+AGG | 0.442027 | tig0018106:-174686 | None:intergenic |
| GAAGGAGTTGGTGAAGAGAA+AGG | 0.444415 | tig0018106:-169023 | None:intergenic |
| CTGAATAAATCCTCGAGACT+TGG | 0.445414 | tig0018106:-170352 | None:intergenic |
| TTTCTACAGCCTTCCATGGC+AGG | 0.446289 | tig0018106:+172602 | Msa1364090:intron |
| TCTTGATCACCGTATCTTGT+TGG | 0.448965 | tig0018106:+174524 | Msa1364090:three_prime_UTR |
| GAAAGTTTCTACTTCTATTG+AGG | 0.449245 | tig0018106:+172674 | Msa1364090:CDS |
| GACAACTTCCTCATGGGTCT+GGG | 0.451955 | tig0018106:+170571 | Msa1364090:CDS |
| GCTAGTATGAATACACATCT+TGG | 0.455950 | tig0018106:+172338 | Msa1364090:CDS |
| AAATGGATCTAAAGAAGTTA+TGG | 0.456366 | tig0018106:+173621 | Msa1364090:CDS |
| TCTGGACCTATTGTAAATGA+TGG | 0.460186 | tig0018106:+173559 | Msa1364090:CDS |
| AGTTTGATTATGTCTTCGAT+TGG | 0.464178 | tig0018106:+173045 | Msa1364090:CDS |
| AAGGAGTTGGTGAAGAGAAA+GGG | 0.465579 | tig0018106:-169022 | None:intergenic |
| ATCCCGAATGTGAGATGGTT+TGG | 0.467028 | tig0018106:+170286 | Msa1364090:CDS |
| AGAGAGAATAAGAACTTGAC+AGG | 0.470574 | tig0018106:+172302 | Msa1364090:intron |
| AACAACTGCATCACGACTGT+TGG | 0.471395 | tig0018106:-174275 | None:intergenic |
| GATCCAATGGAACCTCGTAT+TGG | 0.480777 | tig0018106:+169097 | Msa1364090:exon |
| AATTGGAGATTGGAAATTGA+AGG | 0.482525 | tig0018106:-169041 | None:intergenic |
| CTCTCAGCACTCACAACAGC+TGG | 0.493489 | tig0018106:-173236 | None:intergenic |
| ACCTGTAAGGTATATGCTGA+TGG | 0.497924 | tig0018106:-170757 | None:intergenic |
| TCTCCAATTCCCAATTTCTA+GGG | 0.498461 | tig0018106:+169055 | Msa1364090:five_prime_UTR |
| TTACCAATACGAGGTTCCAT+TGG | 0.498879 | tig0018106:-169100 | None:intergenic |
| GGCTACGTGTTTATTCGAGT+TGG | 0.499829 | tig0018106:-168760 | None:intergenic |
| ACCCTCTCTTCCTCTTGCCA+GGG | 0.500811 | tig0018106:+174312 | Msa1364090:CDS |
| GTACAACAACTGAGGATGCT+TGG | 0.501916 | tig0018106:-170115 | None:intergenic |
| TTTAGCAAGACCGAAGTCAA+TGG | 0.503927 | tig0018106:-170714 | None:intergenic |
| GGAGCACTCCTTAAAACCTC+TGG | 0.508111 | tig0018106:+174346 | Msa1364090:CDS |
| GAGGAAAGCTACTACAAGTT+GGG | 0.512386 | tig0018106:+174617 | Msa1364090:three_prime_UTR |
| AGACCCATGAGGAAGTTGTC+TGG | 0.513231 | tig0018106:-170568 | None:intergenic |
| TCTCTTCCTCTTGCCAGGGA+TGG | 0.513542 | tig0018106:+174316 | Msa1364090:CDS |
| AAAATTGGTAGCGGATCCTT+CGG | 0.514691 | tig0018106:+169142 | Msa1364090:CDS |
| CCAGAGTTTCTTCTACGAGC+AGG | 0.515799 | tig0018106:-173541 | None:intergenic |
| GTTGGTGAAGAGAAAGGGAA+GGG | 0.515890 | tig0018106:-169017 | None:intergenic |
| AATGGCAGAAAATACCTGTA+AGG | 0.515910 | tig0018106:-170770 | None:intergenic |
| CCATTTGAGTCACTTGGTAC+CGG | 0.517246 | tig0018106:-173604 | None:intergenic |
| TTGGTGAAGAGAAAGGGAAG+GGG | 0.518174 | tig0018106:-169016 | None:intergenic |
| TGGTGAAGAGAAAGGGAAGG+GGG | 0.518932 | tig0018106:-169015 | None:intergenic |
| GAGTTGCATGTAGAGATACT+TGG | 0.520768 | tig0018106:-168738 | None:intergenic |
| TTAAACCTTCACGAATGAAA+AGG | 0.521136 | tig0018106:-172894 | None:intergenic |
| TATTCATTCTTATCTTTAGA+GGG | 0.522333 | tig0018106:+174812 | Msa1364090:three_prime_UTR |
| GCTGGTGGTAAGCCAGAACT+TGG | 0.528434 | tig0018106:-173218 | None:intergenic |
| ATACGAGGTTCCATTGGATC+GGG | 0.530519 | tig0018106:-169094 | None:intergenic |
| TTAGATCCATTTGAGTCACT+TGG | 0.530625 | tig0018106:-173610 | None:intergenic |
| CCGGTACCAAGTGACTCAAA+TGG | 0.531968 | tig0018106:+173604 | Msa1364090:CDS |
| TGAGGAAAGCTACTACAAGT+TGG | 0.532375 | tig0018106:+174616 | Msa1364090:three_prime_UTR |
| ACTCGAATAAACACGTAGCC+AGG | 0.534403 | tig0018106:+168763 | Msa1364090:five_prime_UTR |
| GTGAGTGCTGAGAGACCATC+AGG | 0.536378 | tig0018106:+173245 | Msa1364090:CDS |
| TTGTATAAAGCTGAAGCTGA+AGG | 0.536566 | tig0018106:-174746 | None:intergenic |
| AAGTTGTATAAAGTACTTCA+AGG | 0.537249 | tig0018106:+170144 | Msa1364090:CDS |
| TTGTGCTCCGATGATGTGAT+AGG | 0.538146 | tig0018106:-174385 | None:intergenic |
| GGGGAAGATGGTAGACATGC+TGG | 0.538151 | tig0018106:+173502 | Msa1364090:CDS |
| ATTGGTAACAAGTTCCGTCT+TGG | 0.539261 | tig0018106:+169115 | Msa1364090:CDS |
| TAGGTGTATGCCATTGACTT+CGG | 0.549001 | tig0018106:+170704 | Msa1364090:intron |
| TCTAATTTCTTCCGGCCTAG+TGG | 0.549750 | tig0018106:+174226 | Msa1364090:CDS |
| CCTTAAAACTGTACTCATGC+TGG | 0.552041 | tig0018106:+170396 | Msa1364090:CDS |
| CAAACCAGACAACTTCCTCA+TGG | 0.552695 | tig0018106:+170564 | Msa1364090:CDS |
| GATTGTCTCTCCTCCCCTCA+GGG | 0.553551 | tig0018106:-168863 | None:intergenic |
| TCCATTACTGTCGGTCATTG+CGG | 0.553748 | tig0018106:+172824 | Msa1364090:CDS |
| TTCTACAGCCTTCCATGGCA+GGG | 0.557366 | tig0018106:+172603 | Msa1364090:intron |
| TGCTCCAGGACTACCATCCC+TGG | 0.557499 | tig0018106:-174329 | None:intergenic |
| AGGTATATGCTGATGGGTAG+AGG | 0.560253 | tig0018106:-170750 | None:intergenic |
| AGTTGGTGAAGAGAAAGGGA+AGG | 0.564963 | tig0018106:-169018 | None:intergenic |
| AGATTGGAAATTGAAGGAGT+TGG | 0.567018 | tig0018106:-169035 | None:intergenic |
| AATACGAGGTTCCATTGGAT+CGG | 0.571470 | tig0018106:-169095 | None:intergenic |
| TGAATTTCTTTGAGCACCAG+AGG | 0.572897 | tig0018106:-174362 | None:intergenic |
| CTTACAATGGCACGTGCAGA+AGG | 0.576744 | tig0018106:-173104 | None:intergenic |
| ACCGCAATGACCGACAGTAA+TGG | 0.577382 | tig0018106:-172825 | None:intergenic |
| AAGTACGAAGCGAATTCTGA+GGG | 0.578038 | tig0018106:-172802 | None:intergenic |
| ACAACTTCCTCATGGGTCTG+GGG | 0.578843 | tig0018106:+170572 | Msa1364090:CDS |
| CCATGGCAGGGATTAAAAGC+AGG | 0.580774 | tig0018106:+172615 | Msa1364090:CDS |
| CTTCGTACTTCCATTACTGT+CGG | 0.580895 | tig0018106:+172815 | Msa1364090:CDS |
| CCTGTAAGGTATATGCTGAT+GGG | 0.582308 | tig0018106:-170756 | None:intergenic |
| CCTGCTCGTAGAAGAAACTC+TGG | 0.583504 | tig0018106:+173541 | Msa1364090:CDS |
| GGTATTTCTACAGCCTTCCA+TGG | 0.584276 | tig0018106:+172598 | Msa1364090:intron |
| AAACCAGACAACTTCCTCAT+GGG | 0.585296 | tig0018106:+170565 | Msa1364090:CDS |
| GTGATTCTAAGTCGTCCCTA+CGG | 0.586077 | tig0018106:-172470 | None:intergenic |
| CTGGTATCCCGAATGTGAGA+TGG | 0.591046 | tig0018106:+170281 | Msa1364090:CDS |
| GTCTTGTAGATCCACTAGGC+CGG | 0.591531 | tig0018106:-174237 | None:intergenic |
| TCCTTCGGCGAGATCTATCT+CGG | 0.591939 | tig0018106:+169157 | Msa1364090:CDS |
| TGTATAAAGCTGAAGCTGAA+GGG | 0.592495 | tig0018106:-174745 | None:intergenic |
| ATCCCTGGCAAGAGGAAGAG+AGG | 0.593199 | tig0018106:-174314 | None:intergenic |
| GTTCTTGTAATGGATTTACT+GGG | 0.597182 | tig0018106:+170328 | Msa1364090:CDS |
| ACTCATGCTGGCTGATCAGA+TGG | 0.600494 | tig0018106:+170408 | Msa1364090:CDS |
| TTTATCAGAGCAAAGCCGTA+GGG | 0.600968 | tig0018106:+172455 | Msa1364090:intron |
| AAATTCACCTATCACATCAT+CGG | 0.605560 | tig0018106:+174378 | Msa1364090:CDS |
| AATGGCACGTGCAGAAGGAG+TGG | 0.609634 | tig0018106:-173099 | None:intergenic |
| AAATATTCAGACAAATGAAG+AGG | 0.611556 | tig0018106:+169285 | Msa1364090:CDS |
| TGAGGGGTAGCCACGACACA+AGG | 0.615164 | tig0018106:-172785 | None:intergenic |
| GCCAAAGCAACCCTGAGGGG+AGG | 0.618002 | tig0018106:+168853 | Msa1364090:five_prime_UTR |
| CTTGGTCGCAAAATTGGTAG+CGG | 0.618071 | tig0018106:+169133 | Msa1364090:CDS |
| CCTGAATTTCAATGACGAGA+AGG | 0.618175 | tig0018106:+174480 | Msa1364090:CDS |
| GGACTACCATCCCTGGCAAG+AGG | 0.621909 | tig0018106:-174322 | None:intergenic |
| GAAGTACGAAGCGAATTCTG+AGG | 0.623073 | tig0018106:-172803 | None:intergenic |
| CAAGATACGGTGATCAAGAG+TGG | 0.624843 | tig0018106:-174520 | None:intergenic |
| ATTTATCAGAGCAAAGCCGT+AGG | 0.626916 | tig0018106:+172454 | Msa1364090:intron |
| TCCCTGGCAAGAGGAAGAGA+GGG | 0.628185 | tig0018106:-174313 | None:intergenic |
| TCAGCACTCACAACAGCTGG+TGG | 0.637376 | tig0018106:-173233 | None:intergenic |
| GGATGCCAAAGCAACCCTGA+GGG | 0.640195 | tig0018106:+168849 | Msa1364090:five_prime_UTR |
| CGGAACTTGTTACCAATACG+AGG | 0.640695 | tig0018106:-169109 | None:intergenic |
| AATTCAGGCTCTCAATACCT+CGG | 0.640782 | tig0018106:-174465 | None:intergenic |
| ACTTCCTCATGGGTCTGGGG+AGG | 0.643093 | tig0018106:+170575 | Msa1364090:CDS |
| ACTCGTCTTGTAGATCCACT+AGG | 0.645996 | tig0018106:-174241 | None:intergenic |
| AGTGGATCTACAAGACGAGT+AGG | 0.648511 | tig0018106:+174244 | Msa1364090:CDS |
| TTTACTGGGACCAAGTCTCG+AGG | 0.649748 | tig0018106:+170342 | Msa1364090:CDS |
| CTTTCTCACAAACTGCCGAG+TGG | 0.656272 | tig0018106:+174569 | Msa1364090:three_prime_UTR |
| AAGATGGTAGACATGCTGGT+TGG | 0.660444 | tig0018106:+173506 | Msa1364090:CDS |
| ACCGAGATAGATCTCGCCGA+AGG | 0.660795 | tig0018106:-169158 | None:intergenic |
| AGGGACGACTTAGAATCACT+TGG | 0.661964 | tig0018106:+172474 | Msa1364090:CDS |
| AGCAACTAGATCAAACCACC+TGG | 0.668663 | tig0018106:-168781 | None:intergenic |
| TTTGATTCGTACAACAACTG+AGG | 0.675406 | tig0018106:-170123 | None:intergenic |
| ACAACAGACAACAATCCACT+CGG | 0.678434 | tig0018106:-174584 | None:intergenic |
| TGGATGCCAAAGCAACCCTG+AGG | 0.691305 | tig0018106:+168848 | Msa1364090:five_prime_UTR |
| GATGCCAAAGCAACCCTGAG+GGG | 0.694229 | tig0018106:+168850 | Msa1364090:five_prime_UTR |
| CGAATAAACACGTAGCCAGG+TGG | 0.702448 | tig0018106:+168766 | Msa1364090:five_prime_UTR |
| CTCGCCTCCCCAGACCCATG+AGG | 0.716204 | tig0018106:-170579 | None:intergenic |
| TTGTATAAAGTACTTCAAGG+CGG | 0.746900 | tig0018106:+170147 | Msa1364090:CDS |
| AGTACGAAGCGAATTCTGAG+GGG | 0.755113 | tig0018106:-172801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | - | tig0018106:171873-171892 | None:intergenic | 0.0% |
| !! | GAAAATAATAATAATAATGA+TGG | - | tig0018106:169211-169230 | None:intergenic | 10.0% |
| !!! | TGTATTTTAAAATATTGTTT+TGG | + | tig0018106:172703-172722 | Msa1364090:intron | 10.0% |
| !!! | TTTTACTTTTGAAATTATTA+AGG | + | tig0018106:172940-172959 | Msa1364090:intron | 10.0% |
| !!! | TTAATGTTTTTTTTTTAATG+GGG | + | tig0018106:173430-173449 | Msa1364090:intron | 10.0% |
| !!! | TTTTTTTTGAAAAATTAATG+GGG | + | tig0018106:173463-173482 | Msa1364090:intron | 10.0% |
| !!! | TTTAATTAATTTGAAAACTC+AGG | + | tig0018106:169259-169278 | Msa1364090:intron | 15.0% |
| !! | GATTTAGGTAAATAAAAAAT+AGG | - | tig0018106:170463-170482 | None:intergenic | 15.0% |
| !! | TATTTACCTAAATCTTAATA+TGG | + | tig0018106:170469-170488 | Msa1364090:intron | 15.0% |
| !! | ATTTACCTAAATCTTAATAT+GGG | + | tig0018106:170470-170489 | Msa1364090:intron | 15.0% |
| !! | TCACAAAAACTAAATAAAAA+TGG | - | tig0018106:170791-170810 | None:intergenic | 15.0% |
| !!! | TTTTAACTATATGAAATTAG+AGG | + | tig0018106:170848-170867 | Msa1364090:intron | 15.0% |
| !!! | TAAAAGTATTAGCTTTAATT+CGG | + | tig0018106:170972-170991 | Msa1364090:intron | 15.0% |
| !! | AATCAATAGAAAGAAAATTA+AGG | + | tig0018106:171390-171409 | Msa1364090:intron | 15.0% |
| !!! | TTCATTTTGACTTAAAAAAA+AGG | - | tig0018106:171706-171725 | None:intergenic | 15.0% |
| !! | ATATAAATAAGAAAACAAAG+AGG | - | tig0018106:172921-172940 | None:intergenic | 15.0% |
| !! | AAAAGTTATATATCATTCTT+TGG | + | tig0018106:173942-173961 | Msa1364090:intron | 15.0% |
| !! | TATATAAAAAAGATGCTTAT+GGG | + | tig0018106:174655-174674 | Msa1364090:three_prime_UTR | 15.0% |
| !! | AAAAAGAATGAAAATAAAAG+AGG | - | tig0018106:174777-174796 | None:intergenic | 15.0% |
| !!! | TATTTTCATTCTTTTTTTGT+TGG | + | tig0018106:174781-174800 | Msa1364090:three_prime_UTR | 15.0% |
| !!! | ATATTGTAAGGGTATAAATT+CGG | - | tig0018106:170191-170210 | None:intergenic | 20.0% |
| !! | AGTAAACTAAGATATTGTAA+GGG | - | tig0018106:170202-170221 | None:intergenic | 20.0% |
| !! | AAGTAAACTAAGATATTGTA+AGG | - | tig0018106:170203-170222 | None:intergenic | 20.0% |
| !!! | ATTTATTCAGTTTTTGTAGT+CGG | + | tig0018106:170365-170384 | Msa1364090:CDS | 20.0% |
| !! | TTTACCTAAATCTTAATATG+GGG | + | tig0018106:170471-170490 | Msa1364090:intron | 20.0% |
| !!! | ATTCCAAATCATTTTTACAT+AGG | + | tig0018106:170536-170555 | Msa1364090:CDS | 20.0% |
| !!! | TTCCAAATCATTTTTACATA+GGG | + | tig0018106:170537-170556 | Msa1364090:CDS | 20.0% |
| !!! | TTTTGTGAATTTATGTGTAA+TGG | + | tig0018106:170803-170822 | Msa1364090:intron | 20.0% |
| !! | ATATGAAATTAGAGGAAATT+AGG | + | tig0018106:170856-170875 | Msa1364090:intron | 20.0% |
| !!! | AAAAGTATTAGCTTTAATTC+GGG | + | tig0018106:170973-170992 | Msa1364090:intron | 20.0% |
| !!! | ATATAACTTGTTACTATAGT+GGG | - | tig0018106:171190-171209 | None:intergenic | 20.0% |
| !! | GTAACAAGTTATATGAAAAT+TGG | + | tig0018106:171196-171215 | Msa1364090:intron | 20.0% |
| !!! | TAATTTAAAAGCAGTTGATA+AGG | - | tig0018106:172563-172582 | None:intergenic | 20.0% |
| !! | GTAAATATAATTATACCTGA+TGG | - | tig0018106:173263-173282 | None:intergenic | 20.0% |
| !! | CAACTAGATTTATAAAGTAT+TGG | + | tig0018106:173837-173856 | Msa1364090:intron | 20.0% |
| !!! | TCATGTTATTTTTGACATTT+TGG | + | tig0018106:174178-174197 | Msa1364090:intron | 20.0% |
| !!! | AAAATTTTACCAACAAGATA+CGG | - | tig0018106:174536-174555 | None:intergenic | 20.0% |
| !! | GTATATAAAAAAGATGCTTA+TGG | + | tig0018106:174654-174673 | Msa1364090:three_prime_UTR | 20.0% |
| !! | ATATAAAAAAGATGCTTATG+GGG | + | tig0018106:174656-174675 | Msa1364090:three_prime_UTR | 20.0% |
| !! | ATATTCATTCTTATCTTTAG+AGG | + | tig0018106:174811-174830 | Msa1364090:three_prime_UTR | 20.0% |
| !! | TATTCATTCTTATCTTTAGA+GGG | + | tig0018106:174812-174831 | Msa1364090:three_prime_UTR | 20.0% |
| ! | GAAAACAAATTACGTTTGTT+TGG | + | tig0018106:168828-168847 | Msa1364090:five_prime_UTR | 25.0% |
| ! | AGAAGTGAAAAATGAAGAAA+AGG | - | tig0018106:168981-169000 | None:intergenic | 25.0% |
| ! | CTAATAAAACCCTAGAAATT+GGG | - | tig0018106:169067-169086 | None:intergenic | 25.0% |
| !!! | ATGATGGATTGAAAAATTGA+AGG | - | tig0018106:169195-169214 | None:intergenic | 25.0% |
| ! | AAATATTCAGACAAATGAAG+AGG | + | tig0018106:169285-169304 | Msa1364090:CDS | 25.0% |
| !!! | GAAAATCGAAAGTTTTGTTT+TGG | - | tig0018106:169357-169376 | None:intergenic | 25.0% |
| ! | TTTATGTGTATGTGTATGTT+TGG | + | tig0018106:169454-169473 | Msa1364090:intron | 25.0% |
| !! | TATGTAAAGTGATTTGTGTT+TGG | + | tig0018106:169514-169533 | Msa1364090:intron | 25.0% |
| ! | AACAAAACTACATGAATGTT+TGG | - | tig0018106:169731-169750 | None:intergenic | 25.0% |
| ! | AGTGTGCAAAATTGAAATAA+AGG | + | tig0018106:169776-169795 | Msa1364090:intron | 25.0% |
| !! | AAGTTGTATAAAGTACTTCA+AGG | + | tig0018106:170144-170163 | Msa1364090:CDS | 25.0% |
| ! | TCATTAGACTTCATATTACT+CGG | + | tig0018106:170222-170241 | Msa1364090:intron | 25.0% |
| !! | TTACTCGGATTAAATGTTTT+CGG | + | tig0018106:170237-170256 | Msa1364090:intron | 25.0% |
| ! | ATTTCCCCATATTAAGATTT+AGG | - | tig0018106:170478-170497 | None:intergenic | 25.0% |
| ! | CAAAAGAGGTAAATTTGAAA+AGG | - | tig0018106:170684-170703 | None:intergenic | 25.0% |
| !! | TTCAAATTTACCTCTTTTGT+AGG | + | tig0018106:170685-170704 | Msa1364090:intron | 25.0% |
| !!! | CATATAACTTGTTACTATAG+TGG | - | tig0018106:171191-171210 | None:intergenic | 25.0% |
| !!! | GTATTTTTCAACAGAGAAAA+TGG | + | tig0018106:171412-171431 | Msa1364090:intron | 25.0% |
| ! | TAAGTCAAAATGAAGAAGAA+AGG | + | tig0018106:171712-171731 | Msa1364090:intron | 25.0% |
| ! | AAGTCAAAATGAAGAAGAAA+GGG | + | tig0018106:171713-171732 | Msa1364090:intron | 25.0% |
| ! | TAGAAAAAGGCTTATATGTT+GGG | + | tig0018106:172101-172120 | Msa1364090:intron | 25.0% |
| ! | AGGAAGATAAAACAACATAA+TGG | - | tig0018106:172543-172562 | None:intergenic | 25.0% |
| !! | TTTTAATGTTGTCTGTGTTT+TGG | + | tig0018106:172993-173012 | Msa1364090:intron | 25.0% |
| !!! | CGTTACTTGTTATTTTGTTT+AGG | + | tig0018106:173148-173167 | Msa1364090:intron | 25.0% |
| ! | GTTAAATTGTCTTACTTAAG+TGG | + | tig0018106:173170-173189 | Msa1364090:intron | 25.0% |
| ! | ACTAATAGTACAGTAAGAAA+TGG | - | tig0018106:173406-173425 | None:intergenic | 25.0% |
| ! | AAGTTTCCATCATTTACAAT+AGG | - | tig0018106:173568-173587 | None:intergenic | 25.0% |
| ! | AAATGGATCTAAAGAAGTTA+TGG | + | tig0018106:173621-173640 | Msa1364090:CDS | 25.0% |
| ! | ATGGTGAGTATATTCATTTA+TGG | + | tig0018106:173640-173659 | Msa1364090:intron | 25.0% |
| ! | TGGTGAGTATATTCATTTAT+GGG | + | tig0018106:173641-173660 | Msa1364090:intron | 25.0% |
| ! | TAAACAGAAAGTAATGAGAA+AGG | - | tig0018106:173742-173761 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAAGCAAAAAA+GGG | - | tig0018106:173812-173831 | None:intergenic | 25.0% |
| ! | CAAAAATCATGAATTAACCT+CGG | - | tig0018106:174096-174115 | None:intergenic | 25.0% |
| ! | AGCTGCAATAAAAAAAATCA+GGG | - | tig0018106:174153-174172 | None:intergenic | 25.0% |
| ! | TAGCTGCAATAAAAAAAATC+AGG | - | tig0018106:174154-174173 | None:intergenic | 25.0% |
| !!! | ATTTTTGACATTTTGGTCTA+TGG | + | tig0018106:174185-174204 | Msa1364090:intron | 25.0% |
| !!! | GCATCTTTTTTATATACTTG+TGG | - | tig0018106:174651-174670 | None:intergenic | 25.0% |
| AAAAAAAGAGTTTCTCTCAC+TGG | - | tig0018106:168939-168958 | None:intergenic | 30.0% | |
| AATTGGAGATTGGAAATTGA+AGG | - | tig0018106:169044-169063 | None:intergenic | 30.0% | |
| CCTAATAAAACCCTAGAAAT+TGG | - | tig0018106:169068-169087 | None:intergenic | 30.0% | |
| !!! | CCAATTTCTAGGGTTTTATT+AGG | + | tig0018106:169065-169084 | Msa1364090:five_prime_UTR | 30.0% |
| !!! | CAAACATGCAAGTTTTGTTT+TGG | - | tig0018106:169394-169413 | None:intergenic | 30.0% |
| AACAAAACTTGCATGTTTGT+TGG | + | tig0018106:169395-169414 | Msa1364090:intron | 30.0% | |
| !! | TGTATGTGTATGTTTGGTTT+TGG | + | tig0018106:169460-169479 | Msa1364090:intron | 30.0% |
| !!! | GTATGTGTATGTTTGGTTTT+GGG | + | tig0018106:169461-169480 | Msa1364090:intron | 30.0% |
| !!! | TATGTGTATGTTTGGTTTTG+GGG | + | tig0018106:169462-169481 | Msa1364090:intron | 30.0% |
| ACATTCATGTAAAAGTGAGT+TGG | + | tig0018106:169539-169558 | Msa1364090:intron | 30.0% | |
| GCTTCAAGTAGAATCAATTA+TGG | + | tig0018106:169615-169634 | Msa1364090:intron | 30.0% | |
| TCAAGTAGAATCAATTATGG+AGG | + | tig0018106:169618-169637 | Msa1364090:intron | 30.0% | |
| AAGCCAAAATCAATTCTAGA+GGG | - | tig0018106:169694-169713 | None:intergenic | 30.0% | |
| !! | TGAATGTTTGGTTCCATTTT+AGG | - | tig0018106:169719-169738 | None:intergenic | 30.0% |
| ! | TGAAATAAAGGTGTGCTTTA+TGG | + | tig0018106:169788-169807 | Msa1364090:intron | 30.0% |
| !!! | TTTGGTTTGAACTTTTGTAG+AGG | + | tig0018106:169830-169849 | Msa1364090:intron | 30.0% |
| AGAGGAATTGATGTATCTAA+AGG | + | tig0018106:169848-169867 | Msa1364090:intron | 30.0% | |
| CGACAAATTAAATTAGACAC+AGG | - | tig0018106:169906-169925 | None:intergenic | 30.0% | |
| !! | TTAATTTGTCGCTTGTGTAT+TGG | + | tig0018106:169915-169934 | Msa1364090:intron | 30.0% |
| TAACTCTTTCTCATTGCTAT+TGG | + | tig0018106:170073-170092 | Msa1364090:intron | 30.0% | |
| ! | TTGTATAAAGTACTTCAAGG+CGG | + | tig0018106:170147-170166 | Msa1364090:CDS | 30.0% |
| AGAGTACAATGTTCTTGTAA+TGG | + | tig0018106:170318-170337 | Msa1364090:CDS | 30.0% | |
| !! | TGTTCTTGTAATGGATTTAC+TGG | + | tig0018106:170327-170346 | Msa1364090:CDS | 30.0% |
| !! | GTTCTTGTAATGGATTTACT+GGG | + | tig0018106:170328-170347 | Msa1364090:CDS | 30.0% |
| GTCCCTATGTAAAAATGATT+TGG | - | tig0018106:170542-170561 | None:intergenic | 30.0% | |
| ! | GAATCTCTTGTTTACATTGT+TGG | + | tig0018106:171047-171066 | Msa1364090:intron | 30.0% |
| AATCGATTAACTACCAAATG+TGG | + | tig0018106:171128-171147 | Msa1364090:intron | 30.0% | |
| TGGATAGTCTAATAACTACA+GGG | + | tig0018106:171447-171466 | Msa1364090:intron | 30.0% | |
| AACCATTAGAAGAGATTTAG+AGG | + | tig0018106:172007-172026 | Msa1364090:intron | 30.0% | |
| ATCCTCTAAATCTCTTCTAA+TGG | - | tig0018106:172012-172031 | None:intergenic | 30.0% | |
| ! | TTTTCGACCTAATATGTGAT+AGG | + | tig0018106:172036-172055 | Msa1364090:intron | 30.0% |
| TAATATGTGATAGGACTTTG+CGG | + | tig0018106:172045-172064 | Msa1364090:intron | 30.0% | |
| GTAGAAAAAGGCTTATATGT+TGG | + | tig0018106:172100-172119 | Msa1364090:intron | 30.0% | |
| ! | AGTTCTTATTCTCTCTGAAA+AGG | - | tig0018106:172298-172317 | None:intergenic | 30.0% |
| ATGAATACACATCTTGGAAT+TGG | + | tig0018106:172344-172363 | Msa1364090:CDS | 30.0% | |
| !! | GTTCTTATGTACTTTTTGAG+AGG | + | tig0018106:172501-172520 | Msa1364090:CDS | 30.0% |
| !! | TTATGTACTTTTTGAGAGGA+AGG | + | tig0018106:172505-172524 | Msa1364090:CDS | 30.0% |
| GATAAAACAACATAATGGCA+AGG | - | tig0018106:172538-172557 | None:intergenic | 30.0% | |
| GAAAGTTTCTACTTCTATTG+AGG | + | tig0018106:172674-172693 | Msa1364090:CDS | 30.0% | |
| ! | CTTTTCAGATATGCATAATC+TGG | - | tig0018106:172862-172881 | None:intergenic | 30.0% |
| CAGATTATGCATATCTGAAA+AGG | + | tig0018106:172860-172879 | Msa1364090:CDS | 30.0% | |
| TTAAACCTTCACGAATGAAA+AGG | - | tig0018106:172897-172916 | None:intergenic | 30.0% | |
| ! | TAAGGTCTTTGATAACTAGA+TGG | + | tig0018106:172958-172977 | Msa1364090:intron | 30.0% |
| AATCGAAGACATAATCAAAC+TGG | - | tig0018106:173046-173065 | None:intergenic | 30.0% | |
| AGTTTGATTATGTCTTCGAT+TGG | + | tig0018106:173045-173064 | Msa1364090:CDS | 30.0% | |
| AGATTGCTGATACTTCAAAA+TGG | - | tig0018106:173072-173091 | None:intergenic | 30.0% | |
| !! | TATATTTACTTTTACGACCC+TGG | + | tig0018106:173274-173293 | Msa1364090:intron | 30.0% |
| ACACCTAAAATAATAGACCA+GGG | - | tig0018106:173294-173313 | None:intergenic | 30.0% | |
| TTCTTAGCTTAACAATGTGT+TGG | + | tig0018106:173327-173346 | Msa1364090:intron | 30.0% | |
| TAATGGGGAAATTTCTGTTT+AGG | + | tig0018106:173478-173497 | Msa1364090:intron | 30.0% | |
| ATCAACGCTGTATTTCAAAA+TGG | + | tig0018106:173767-173786 | Msa1364090:intron | 30.0% | |
| CAGAAGAAAAGAAGCAAAAA+AGG | - | tig0018106:173813-173832 | None:intergenic | 30.0% | |
| ! | ACTTAGTGTGTTAGTACTTT+TGG | + | tig0018106:174047-174066 | Msa1364090:intron | 30.0% |
| ! | CTTAGTGTGTTAGTACTTTT+GGG | + | tig0018106:174048-174067 | Msa1364090:intron | 30.0% |
| !! | TGTCTAGTTCTAATTTCTTC+CGG | + | tig0018106:174218-174237 | Msa1364090:CDS | 30.0% |
| AAATTCACCTATCACATCAT+CGG | + | tig0018106:174378-174397 | Msa1364090:CDS | 30.0% | |
| CAAAGCTTTACCCATAAAAA+AGG | + | tig0018106:174691-174710 | Msa1364090:three_prime_UTR | 30.0% | |
| !!! | ACAGAAGAAGCCTTTTTTAT+GGG | - | tig0018106:174704-174723 | None:intergenic | 30.0% |
| !!! | AACAGAAGAAGCCTTTTTTA+TGG | - | tig0018106:174705-174724 | None:intergenic | 30.0% |
| !!! | CATCTTTTTTACGTTCAAGT+GGG | + | tig0018106:174844-174863 | Msa1364090:three_prime_UTR | 30.0% |
| GAAAAATGAAGAAAAGGCGA+GGG | - | tig0018106:168975-168994 | None:intergenic | 35.0% | |
| TGAAAAATGAAGAAAAGGCG+AGG | - | tig0018106:168976-168995 | None:intergenic | 35.0% | |
| AGATTGGAAATTGAAGGAGT+TGG | - | tig0018106:169038-169057 | None:intergenic | 35.0% | |
| AGAAATTGGGAATTGGAGAT+TGG | - | tig0018106:169054-169073 | None:intergenic | 35.0% | |
| ATCTCCAATTCCCAATTTCT+AGG | + | tig0018106:169054-169073 | Msa1364090:five_prime_UTR | 35.0% | |
| TCTCCAATTCCCAATTTCTA+GGG | + | tig0018106:169055-169074 | Msa1364090:five_prime_UTR | 35.0% | |
| AAACCCTAGAAATTGGGAAT+TGG | - | tig0018106:169061-169080 | None:intergenic | 35.0% | |
| !!! | TACCCCTCTAGAATTGATTT+TGG | + | tig0018106:169688-169707 | Msa1364090:intron | 35.0% |
| ! | AGCCAAAATCAATTCTAGAG+GGG | - | tig0018106:169693-169712 | None:intergenic | 35.0% |
| GAAGCCAAAATCAATTCTAG+AGG | - | tig0018106:169695-169714 | None:intergenic | 35.0% | |
| !!! | GATTTTGGCTTCTCCTAAAA+TGG | + | tig0018106:169703-169722 | Msa1364090:intron | 35.0% |
| !!! | ATGTGTGGTGGAATGTTTTT+TGG | + | tig0018106:169812-169831 | Msa1364090:intron | 35.0% |
| !! | ATGTATCTAAAGGTGCTGAT+AGG | + | tig0018106:169858-169877 | Msa1364090:intron | 35.0% |
| !! | TATTGGTTCGACAACTCAAA+AGG | + | tig0018106:169932-169951 | Msa1364090:intron | 35.0% |
| !! | ATTGGTTCGACAACTCAAAA+GGG | + | tig0018106:169933-169952 | Msa1364090:intron | 35.0% |
| ! | AACAACGACGTTGATTGTTT+AGG | + | tig0018106:170025-170044 | Msa1364090:intron | 35.0% |
| ! | TTCTCATTGCTATTGGATTC+AGG | + | tig0018106:170080-170099 | Msa1364090:intron | 35.0% |
| ! | TTTGATTCGTACAACAACTG+AGG | - | tig0018106:170126-170145 | None:intergenic | 35.0% |
| GGGTATAAATTCGGTAAGAT+AGG | - | tig0018106:170182-170201 | None:intergenic | 35.0% | |
| ! | TCGGATTAAATGTTTTCGGT+TGG | + | tig0018106:170241-170260 | Msa1364090:intron | 35.0% |
| !!! | TTCGGTTGGCTACTTTTATA+TGG | + | tig0018106:170255-170274 | Msa1364090:intron | 35.0% |
| !! | CAGCATGAGTACAGTTTTAA+GGG | - | tig0018106:170398-170417 | None:intergenic | 35.0% |
| AATCCAAGAGATGACAGAAA+GGG | - | tig0018106:170653-170672 | None:intergenic | 35.0% | |
| TCGGTCTTGCTAAAAAATAC+AGG | + | tig0018106:170723-170742 | Msa1364090:CDS | 35.0% | |
| CGGTCTTGCTAAAAAATACA+GGG | + | tig0018106:170724-170743 | Msa1364090:CDS | 35.0% | |
| AATGGCAGAAAATACCTGTA+AGG | - | tig0018106:170773-170792 | None:intergenic | 35.0% | |
| ACTTGCTTCAACATTCAACT+AGG | - | tig0018106:170829-170848 | None:intergenic | 35.0% | |
| TGCATGACTTAACTATTCAC+TGG | + | tig0018106:170936-170955 | Msa1364090:intron | 35.0% | |
| GCATGACTTAACTATTCACT+GGG | + | tig0018106:170937-170956 | Msa1364090:intron | 35.0% | |
| TTAATTCGGGTGATGACATT+AGG | + | tig0018106:170986-171005 | Msa1364090:intron | 35.0% | |
| !! | ATTAGGTGGTGCTTTTTGTT+TGG | + | tig0018106:171003-171022 | Msa1364090:intron | 35.0% |
| ! | ATCCTTTTTGTCCCAATTGT+GGG | + | tig0018106:171250-171269 | Msa1364090:intron | 35.0% |
| GTGGATAGTCTAATAACTAC+AGG | + | tig0018106:171446-171465 | Msa1364090:intron | 35.0% | |
| ATAGTCTAATAACTACAGGG+AGG | + | tig0018106:171450-171469 | Msa1364090:intron | 35.0% | |
| ! | AGAACAGAGATGAGATTTTG+TGG | - | tig0018106:171672-171691 | None:intergenic | 35.0% |
| GATTAGAGATCTAGAGATCT+AGG | + | tig0018106:171751-171770 | Msa1364090:intron | 35.0% | |
| GCAAAGTCCTATCACATATT+AGG | - | tig0018106:172046-172065 | None:intergenic | 35.0% | |
| ! | CATATAAGCCTTTTTCTACC+AGG | - | tig0018106:172099-172118 | None:intergenic | 35.0% |
| !! | CACAACTAAGTTGATTACTG+GGG | - | tig0018106:172245-172264 | None:intergenic | 35.0% |
| !! | CCACAACTAAGTTGATTACT+GGG | - | tig0018106:172246-172265 | None:intergenic | 35.0% |
| CCAGTAATCAACTTAGTTGT+GGG | + | tig0018106:172244-172263 | Msa1364090:intron | 35.0% | |
| AGAGAGAATAAGAACTTGAC+AGG | + | tig0018106:172302-172321 | Msa1364090:intron | 35.0% | |
| GCTAGTATGAATACACATCT+TGG | + | tig0018106:172338-172357 | Msa1364090:CDS | 35.0% | |
| CTTGCCTTTGTATCTATTGT+TGG | + | tig0018106:172396-172415 | Msa1364090:intron | 35.0% | |
| AACGCCAACAATAGATACAA+AGG | - | tig0018106:172403-172422 | None:intergenic | 35.0% | |
| TCCTTTATCCTAATAAAGCG+TGG | + | tig0018106:172745-172764 | Msa1364090:intron | 35.0% | |
| ! | GTCTTTGATAACTAGATGGT+CGG | + | tig0018106:172962-172981 | Msa1364090:intron | 35.0% |
| ! | TCTTTGATAACTAGATGGTC+GGG | + | tig0018106:172963-172982 | Msa1364090:intron | 35.0% |
| ! | TTGTATTCTTTTGTTGCTGC+AGG | + | tig0018106:173017-173036 | Msa1364090:intron | 35.0% |
| TTACTTAAGTGGCATATTGC+AGG | + | tig0018106:173181-173200 | Msa1364090:intron | 35.0% | |
| TACTTAAGTGGCATATTGCA+GGG | + | tig0018106:173182-173201 | Msa1364090:intron | 35.0% | |
| CACACCTAAAATAATAGACC+AGG | - | tig0018106:173295-173314 | None:intergenic | 35.0% | |
| !!! | GGTCTATTATTTTAGGTGTG+TGG | + | tig0018106:173295-173314 | Msa1364090:intron | 35.0% |
| TCTGGACCTATTGTAAATGA+TGG | + | tig0018106:173559-173578 | Msa1364090:CDS | 35.0% | |
| TTAGATCCATTTGAGTCACT+TGG | - | tig0018106:173613-173632 | None:intergenic | 35.0% | |
| AGAGATAACTTGGTCATAAG+TGG | - | tig0018106:173668-173687 | None:intergenic | 35.0% | |
| GCTTTCTACAAGAGATAACT+TGG | - | tig0018106:173678-173697 | None:intergenic | 35.0% | |
| ACAGAAAGTAATGAGAAAGG+TGG | - | tig0018106:173739-173758 | None:intergenic | 35.0% | |
| ATGTAGCAAATCTGAAGAAG+CGG | - | tig0018106:173971-173990 | None:intergenic | 35.0% | |
| !! | AATTTTGAGTCAACTATCCG+AGG | + | tig0018106:174448-174467 | Msa1364090:CDS | 35.0% |
| ! | GTCTGTTGTTCATTTTGTTG+AGG | + | tig0018106:174598-174617 | Msa1364090:three_prime_UTR | 35.0% |
| AAAAAAGATGCTTATGGGGT+TGG | + | tig0018106:174660-174679 | Msa1364090:three_prime_UTR | 35.0% | |
| ! | TTTATGGGTAAAGCTTTGTC+AGG | - | tig0018106:174689-174708 | None:intergenic | 35.0% |
| TGTATAAAGCTGAAGCTGAA+GGG | - | tig0018106:174748-174767 | None:intergenic | 35.0% | |
| TTGTATAAAGCTGAAGCTGA+AGG | - | tig0018106:174749-174768 | None:intergenic | 35.0% | |
| CCACTTGAACGTAAAAAAGA+TGG | - | tig0018106:174846-174865 | None:intergenic | 35.0% | |
| !!! | CCATCTTTTTTACGTTCAAG+TGG | + | tig0018106:174843-174862 | Msa1364090:three_prime_UTR | 35.0% |
| GAGTTGCATGTAGAGATACT+TGG | - | tig0018106:168741-168760 | None:intergenic | 40.0% | |
| !! | AAGGAGTTGGTGAAGAGAAA+GGG | - | tig0018106:169025-169044 | None:intergenic | 40.0% |
| ! | TAGGTTTTTACCCGATCCAA+TGG | + | tig0018106:169084-169103 | Msa1364090:exon | 40.0% |
| AATACGAGGTTCCATTGGAT+CGG | - | tig0018106:169098-169117 | None:intergenic | 40.0% | |
| TTACCAATACGAGGTTCCAT+TGG | - | tig0018106:169103-169122 | None:intergenic | 40.0% | |
| ! | ATTGGTAACAAGTTCCGTCT+TGG | + | tig0018106:169115-169134 | Msa1364090:CDS | 40.0% |
| ! | TACCAATTTTGCGACCAAGA+CGG | - | tig0018106:169132-169151 | None:intergenic | 40.0% |
| !! | AAAATTGGTAGCGGATCCTT+CGG | + | tig0018106:169142-169161 | Msa1364090:CDS | 40.0% |
| ! | TTGGTTCGACAACTCAAAAG+GGG | + | tig0018106:169934-169953 | Msa1364090:intron | 40.0% |
| CTGAATAAATCCTCGAGACT+TGG | - | tig0018106:170355-170374 | None:intergenic | 40.0% | |
| ! | CCAGCATGAGTACAGTTTTA+AGG | - | tig0018106:170399-170418 | None:intergenic | 40.0% |
| CCTTAAAACTGTACTCATGC+TGG | + | tig0018106:170396-170415 | Msa1364090:CDS | 40.0% | |
| GGAAAGAGACGAAGCAATAA+AGG | - | tig0018106:170442-170461 | None:intergenic | 40.0% | |
| AAACCAGACAACTTCCTCAT+GGG | + | tig0018106:170565-170584 | Msa1364090:CDS | 40.0% | |
| TATCCCTTTCTGTCATCTCT+TGG | + | tig0018106:170647-170666 | Msa1364090:intron | 40.0% | |
| CAATCCAAGAGATGACAGAA+AGG | - | tig0018106:170654-170673 | None:intergenic | 40.0% | |
| ATGGCATACACCTACAAAAG+AGG | - | tig0018106:170698-170717 | None:intergenic | 40.0% | |
| !! | TAGGTGTATGCCATTGACTT+CGG | + | tig0018106:170704-170723 | Msa1364090:intron | 40.0% |
| TTTAGCAAGACCGAAGTCAA+TGG | - | tig0018106:170717-170736 | None:intergenic | 40.0% | |
| CCTGTAAGGTATATGCTGAT+GGG | - | tig0018106:170759-170778 | None:intergenic | 40.0% | |
| ACCTGTAAGGTATATGCTGA+TGG | - | tig0018106:170760-170779 | None:intergenic | 40.0% | |
| CTCTGTTACACATCCACATT+TGG | - | tig0018106:171144-171163 | None:intergenic | 40.0% | |
| GATGTGTAACAGAGAATTGC+TGG | + | tig0018106:171150-171169 | Msa1364090:intron | 40.0% | |
| ! | GATCCTTTTTGTCCCAATTG+TGG | + | tig0018106:171249-171268 | Msa1364090:intron | 40.0% |
| AGAAACTAGCACCCACAATT+GGG | - | tig0018106:171264-171283 | None:intergenic | 40.0% | |
| TAGAAACTAGCACCCACAAT+TGG | - | tig0018106:171265-171284 | None:intergenic | 40.0% | |
| TTTCAACAGAGAAAATGGCG+AGG | + | tig0018106:171417-171436 | Msa1364090:intron | 40.0% | |
| AACTGTAGGACTGACAATAG+CGG | + | tig0018106:171481-171500 | Msa1364090:intron | 40.0% | |
| GTTTCCGCTTTGACAACTAT+GGG | + | tig0018106:171981-172000 | Msa1364090:intron | 40.0% | |
| TTGTCCCATAGTTGTCAAAG+CGG | - | tig0018106:171988-172007 | None:intergenic | 40.0% | |
| ! | TTGCGGTGTCAATTGATTCA+TGG | + | tig0018106:172062-172081 | Msa1364090:intron | 40.0% |
| ! | CTTTTTCTACCAGGTGAGAT+TGG | - | tig0018106:172090-172109 | None:intergenic | 40.0% |
| CAATCTCACCTGGTAGAAAA+AGG | + | tig0018106:172088-172107 | Msa1364090:intron | 40.0% | |
| CCCAGTAATCAACTTAGTTG+TGG | + | tig0018106:172243-172262 | Msa1364090:intron | 40.0% | |
| !! | CCCACAACTAAGTTGATTAC+TGG | - | tig0018106:172247-172266 | None:intergenic | 40.0% |
| AGATACAAAGGCAAGTGAGT+TGG | - | tig0018106:172391-172410 | None:intergenic | 40.0% | |
| TTGGCGTTTGATTCTGAACT+TGG | + | tig0018106:172415-172434 | Msa1364090:intron | 40.0% | |
| TGGCGTTTGATTCTGAACTT+GGG | + | tig0018106:172416-172435 | Msa1364090:intron | 40.0% | |
| ATTTATCAGAGCAAAGCCGT+AGG | + | tig0018106:172454-172473 | Msa1364090:intron | 40.0% | |
| TTTATCAGAGCAAAGCCGTA+GGG | + | tig0018106:172455-172474 | Msa1364090:intron | 40.0% | |
| ! | GCCACGCTTTATTAGGATAA+AGG | - | tig0018106:172749-172768 | None:intergenic | 40.0% |
| ! | AAAGCAAGCCACGCTTTATT+AGG | - | tig0018106:172756-172775 | None:intergenic | 40.0% |
| ! | TTTTGTTAGTCCTTGTGTCG+TGG | + | tig0018106:172775-172794 | Msa1364090:intron | 40.0% |
| AAGTACGAAGCGAATTCTGA+GGG | - | tig0018106:172805-172824 | None:intergenic | 40.0% | |
| CTTCGTACTTCCATTACTGT+CGG | + | tig0018106:172815-172834 | Msa1364090:CDS | 40.0% | |
| ! | CGACCCTGGTCTATTATTTT+AGG | + | tig0018106:173288-173307 | Msa1364090:intron | 40.0% |
| TGGGGAAATTTCTGTTTAGG+TGG | + | tig0018106:173481-173500 | Msa1364090:intron | 40.0% | |
| GGGGAAATTTCTGTTTAGGT+GGG | + | tig0018106:173482-173501 | Msa1364090:intron | 40.0% | |
| GGGAAATTTCTGTTTAGGTG+GGG | + | tig0018106:173483-173502 | Msa1364090:intron | 40.0% | |
| ! | CTTGTCTAGACAAAAAGCAC+CGG | + | tig0018106:173585-173604 | Msa1364090:CDS | 40.0% |
| ATTAACCTCGGCAAACACAT+AGG | - | tig0018106:174084-174103 | None:intergenic | 40.0% | |
| ! | TTTGAGCACCAGAGGTTTTA+AGG | - | tig0018106:174357-174376 | None:intergenic | 40.0% |
| TGAATTTCTTTGAGCACCAG+AGG | - | tig0018106:174365-174384 | None:intergenic | 40.0% | |
| CACAAAGCAACAACATCTTC+TGG | + | tig0018106:174403-174422 | Msa1364090:CDS | 40.0% | |
| AATTCAGGCTCTCAATACCT+CGG | - | tig0018106:174468-174487 | None:intergenic | 40.0% | |
| CCTTCTCGTCATTGAAATTC+AGG | - | tig0018106:174483-174502 | None:intergenic | 40.0% | |
| CCTGAATTTCAATGACGAGA+AGG | + | tig0018106:174480-174499 | Msa1364090:CDS | 40.0% | |
| TCTTGATCACCGTATCTTGT+TGG | + | tig0018106:174524-174543 | Msa1364090:three_prime_UTR | 40.0% | |
| ACAACAGACAACAATCCACT+CGG | - | tig0018106:174587-174606 | None:intergenic | 40.0% | |
| TGAGGAAAGCTACTACAAGT+TGG | + | tig0018106:174616-174635 | Msa1364090:three_prime_UTR | 40.0% | |
| GAGGAAAGCTACTACAAGTT+GGG | + | tig0018106:174617-174636 | Msa1364090:three_prime_UTR | 40.0% | |
| GGCTACGTGTTTATTCGAGT+TGG | - | tig0018106:168763-168782 | None:intergenic | 45.0% | |
| ACTCGAATAAACACGTAGCC+AGG | + | tig0018106:168763-168782 | Msa1364090:five_prime_UTR | 45.0% | |
| AGCAACTAGATCAAACCACC+TGG | - | tig0018106:168784-168803 | None:intergenic | 45.0% | |
| TGGTTTGATCTAGTTGCTGC+TGG | + | tig0018106:168786-168805 | Msa1364090:five_prime_UTR | 45.0% | |
| GAAAAGGCGAGGGACAAAAT+TGG | - | tig0018106:168965-168984 | None:intergenic | 45.0% | |
| TTGGTGAAGAGAAAGGGAAG+GGG | - | tig0018106:169019-169038 | None:intergenic | 45.0% | |
| ! | GTTGGTGAAGAGAAAGGGAA+GGG | - | tig0018106:169020-169039 | None:intergenic | 45.0% |
| !! | AGTTGGTGAAGAGAAAGGGA+AGG | - | tig0018106:169021-169040 | None:intergenic | 45.0% |
| !! | GAAGGAGTTGGTGAAGAGAA+AGG | - | tig0018106:169026-169045 | None:intergenic | 45.0% |
| ATACGAGGTTCCATTGGATC+GGG | - | tig0018106:169097-169116 | None:intergenic | 45.0% | |
| GATCCAATGGAACCTCGTAT+TGG | + | tig0018106:169097-169116 | Msa1364090:exon | 45.0% | |
| !! | CGGAACTTGTTACCAATACG+AGG | - | tig0018106:169112-169131 | None:intergenic | 45.0% |
| TTCCGTCTTGGTCGCAAAAT+TGG | + | tig0018106:169127-169146 | Msa1364090:CDS | 45.0% | |
| CTTGGTCGCAAAATTGGTAG+CGG | + | tig0018106:169133-169152 | Msa1364090:CDS | 45.0% | |
| GGTGTGCTTTATGGAATGTG+TGG | + | tig0018106:169797-169816 | Msa1364090:intron | 45.0% | |
| GTGCTTTATGGAATGTGTGG+TGG | + | tig0018106:169800-169819 | Msa1364090:intron | 45.0% | |
| CTGATAGGTGTGTGTGACTA+AGG | + | tig0018106:169873-169892 | Msa1364090:intron | 45.0% | |
| !! | GACAACTCAAAAGGGGTGTT+TGG | + | tig0018106:169941-169960 | Msa1364090:intron | 45.0% |
| GTACAACAACTGAGGATGCT+TGG | - | tig0018106:170118-170137 | None:intergenic | 45.0% | |
| !!! | GGCTACTTTTATATGGCAGC+TGG | + | tig0018106:170262-170281 | Msa1364090:intron | 45.0% |
| ATCCCGAATGTGAGATGGTT+TGG | + | tig0018106:170286-170305 | Msa1364090:CDS | 45.0% | |
| ACGCCAAACCATCTCACATT+CGG | - | tig0018106:170292-170311 | None:intergenic | 45.0% | |
| CAAACCAGACAACTTCCTCA+TGG | + | tig0018106:170564-170583 | Msa1364090:CDS | 45.0% | |
| ! | AGGTATATGCTGATGGGTAG+AGG | - | tig0018106:170753-170772 | None:intergenic | 45.0% |
| CCCATCAGCATATACCTTAC+AGG | + | tig0018106:170756-170775 | Msa1364090:CDS | 45.0% | |
| ATTCGGGTGATGACATTAGG+TGG | + | tig0018106:170989-171008 | Msa1364090:intron | 45.0% | |
| CACCCACAATTGGGACAAAA+AGG | - | tig0018106:171255-171274 | None:intergenic | 45.0% | |
| AGAGAAAATGGCGAGGTCTT+AGG | + | tig0018106:171424-171443 | Msa1364090:intron | 45.0% | |
| GGGAGGTGAAAGAAAACTGT+AGG | + | tig0018106:171467-171486 | Msa1364090:intron | 45.0% | |
| AGGCAAAAGCGGAACAAAAG+CGG | + | tig0018106:171579-171598 | Msa1364090:intron | 45.0% | |
| TAGTTGTCAAAGCGGAAACG+CGG | - | tig0018106:171980-171999 | None:intergenic | 45.0% | |
| CGTTTCCGCTTTGACAACTA+TGG | + | tig0018106:171980-171999 | Msa1364090:intron | 45.0% | |
| GGCGTTTGATTCTGAACTTG+GGG | + | tig0018106:172417-172436 | Msa1364090:intron | 45.0% | |
| GTGATTCTAAGTCGTCCCTA+CGG | - | tig0018106:172473-172492 | None:intergenic | 45.0% | |
| AGGGACGACTTAGAATCACT+TGG | + | tig0018106:172474-172493 | Msa1364090:CDS | 45.0% | |
| ! | GGTATTTCTACAGCCTTCCA+TGG | + | tig0018106:172598-172617 | Msa1364090:intron | 45.0% |
| ! | CTTTTAATCCCTGCCATGGA+AGG | - | tig0018106:172614-172633 | None:intergenic | 45.0% |
| AGTACGAAGCGAATTCTGAG+GGG | - | tig0018106:172804-172823 | None:intergenic | 45.0% | |
| GAAGTACGAAGCGAATTCTG+AGG | - | tig0018106:172806-172825 | None:intergenic | 45.0% | |
| TCCATTACTGTCGGTCATTG+CGG | + | tig0018106:172824-172843 | Msa1364090:CDS | 45.0% | |
| TTCTGTTTAGGTGGGGAAGA+TGG | + | tig0018106:173490-173509 | Msa1364090:intron | 45.0% | |
| AAGATGGTAGACATGCTGGT+TGG | + | tig0018106:173506-173525 | Msa1364090:CDS | 45.0% | |
| CCATTTGAGTCACTTGGTAC+CGG | - | tig0018106:173607-173626 | None:intergenic | 45.0% | |
| CAATTCTGCACAGACACACA+TGG | - | tig0018106:173868-173887 | None:intergenic | 45.0% | |
| TATGTCCTATGTGTTTGCCG+AGG | + | tig0018106:174076-174095 | Msa1364090:intron | 45.0% | |
| !! | AGGGTATTGTGACAACAAGC+AGG | - | tig0018106:174134-174153 | None:intergenic | 45.0% |
| TCTAATTTCTTCCGGCCTAG+TGG | + | tig0018106:174226-174245 | Msa1364090:CDS | 45.0% | |
| ACTCGTCTTGTAGATCCACT+AGG | - | tig0018106:174244-174263 | None:intergenic | 45.0% | |
| AGTGGATCTACAAGACGAGT+AGG | + | tig0018106:174244-174263 | Msa1364090:CDS | 45.0% | |
| AACAACTGCATCACGACTGT+TGG | - | tig0018106:174278-174297 | None:intergenic | 45.0% | |
| TTGTGCTCCGATGATGTGAT+AGG | - | tig0018106:174388-174407 | None:intergenic | 45.0% | |
| CAAGATACGGTGATCAAGAG+TGG | - | tig0018106:174523-174542 | None:intergenic | 45.0% | |
| !! | AAATTAATTATTTATTTACT+TGG | + | tig0018106:172577-172596 | Msa1364090:intron | 5.0% |
| !!! | TTTTAATGTTTTTTTTTTAA+TGG | + | tig0018106:173428-173447 | Msa1364090:intron | 5.0% |
| !!! | TTTAATGTTTTTTTTTTAAT+GGG | + | tig0018106:173429-173448 | Msa1364090:intron | 5.0% |
| !!! | TTTTTTTTTTGAAAAATTAA+TGG | + | tig0018106:173461-173480 | Msa1364090:intron | 5.0% |
| !!! | TTTTTTTTTGAAAAATTAAT+GGG | + | tig0018106:173462-173481 | Msa1364090:intron | 5.0% |
| !!! | TTCAAATTTTATTATTTTTT+TGG | - | tig0018106:174883-174902 | None:intergenic | 5.0% |
| CGAATAAACACGTAGCCAGG+TGG | + | tig0018106:168766-168785 | Msa1364090:five_prime_UTR | 50.0% | |
| AAGGGAAGGGGGAAAAGGAA+CGG | - | tig0018106:169007-169026 | None:intergenic | 50.0% | |
| AGAGAAAGGGAAGGGGGAAA+AGG | - | tig0018106:169012-169031 | None:intergenic | 50.0% | |
| TGGTGAAGAGAAAGGGAAGG+GGG | - | tig0018106:169018-169037 | None:intergenic | 50.0% | |
| TCCTTCGGCGAGATCTATCT+CGG | + | tig0018106:169157-169176 | Msa1364090:CDS | 50.0% | |
| CTGGTATCCCGAATGTGAGA+TGG | + | tig0018106:170281-170300 | Msa1364090:CDS | 50.0% | |
| CGCCAAACCATCTCACATTC+GGG | - | tig0018106:170291-170310 | None:intergenic | 50.0% | |
| ! | GTGAGATGGTTTGGCGTAGA+AGG | + | tig0018106:170295-170314 | Msa1364090:CDS | 50.0% |
| TTTACTGGGACCAAGTCTCG+AGG | + | tig0018106:170342-170361 | Msa1364090:CDS | 50.0% | |
| ! | ACTCATGCTGGCTGATCAGA+TGG | + | tig0018106:170408-170427 | Msa1364090:CDS | 50.0% |
| ! | ATGCTGGCTGATCAGATGGT+AGG | + | tig0018106:170412-170431 | Msa1364090:intron | 50.0% |
| AGACCCATGAGGAAGTTGTC+TGG | - | tig0018106:170571-170590 | None:intergenic | 50.0% | |
| AGACAACTTCCTCATGGGTC+TGG | + | tig0018106:170570-170589 | Msa1364090:CDS | 50.0% | |
| GACAACTTCCTCATGGGTCT+GGG | + | tig0018106:170571-170590 | Msa1364090:CDS | 50.0% | |
| ACAACTTCCTCATGGGTCTG+GGG | + | tig0018106:170572-170591 | Msa1364090:CDS | 50.0% | |
| GAAAATGGCGAGGTCTTAGG+TGG | + | tig0018106:171427-171446 | Msa1364090:intron | 50.0% | |
| CTGACAATAGCGGTCTAACG+CGG | + | tig0018106:171491-171510 | Msa1364090:intron | 50.0% | |
| GGCAAAAGCGGAACAAAAGC+GGG | + | tig0018106:171580-171599 | Msa1364090:intron | 50.0% | |
| TTCATGGAGCCAATCTCACC+TGG | + | tig0018106:172078-172097 | Msa1364090:intron | 50.0% | |
| TTTCTACAGCCTTCCATGGC+AGG | + | tig0018106:172602-172621 | Msa1364090:intron | 50.0% | |
| TTCTACAGCCTTCCATGGCA+GGG | + | tig0018106:172603-172622 | Msa1364090:intron | 50.0% | |
| !! | CCTGCTTTTAATCCCTGCCA+TGG | - | tig0018106:172618-172637 | None:intergenic | 50.0% |
| CCATGGCAGGGATTAAAAGC+AGG | + | tig0018106:172615-172634 | Msa1364090:CDS | 50.0% | |
| ACCGCAATGACCGACAGTAA+TGG | - | tig0018106:172828-172847 | None:intergenic | 50.0% | |
| ! | CGCGACCTTTTCATTCGTGA+AGG | + | tig0018106:172889-172908 | Msa1364090:CDS | 50.0% |
| CTTACAATGGCACGTGCAGA+AGG | - | tig0018106:173107-173126 | None:intergenic | 50.0% | |
| ! | TCTGCACGTGCCATTGTAAG+TGG | + | tig0018106:173107-173126 | Msa1364090:intron | 50.0% |
| TAGCACACCGCCACTTACAA+TGG | - | tig0018106:173120-173139 | None:intergenic | 50.0% | |
| AGTGGCATATTGCAGGGTTC+TGG | + | tig0018106:173188-173207 | Msa1364090:intron | 50.0% | |
| ! | ATATTGCAGGGTTCTGGTGC+TGG | + | tig0018106:173194-173213 | Msa1364090:intron | 50.0% |
| ! | TATTGCAGGGTTCTGGTGCT+GGG | + | tig0018106:173195-173214 | Msa1364090:intron | 50.0% |
| CCAGAGTTTCTTCTACGAGC+AGG | - | tig0018106:173544-173563 | None:intergenic | 50.0% | |
| CCTGCTCGTAGAAGAAACTC+TGG | + | tig0018106:173541-173560 | Msa1364090:CDS | 50.0% | |
| CCGGTACCAAGTGACTCAAA+TGG | + | tig0018106:173604-173623 | Msa1364090:CDS | 50.0% | |
| GTCTTGTAGATCCACTAGGC+CGG | - | tig0018106:174240-174259 | None:intergenic | 50.0% | |
| !!! | GAGGTTTTAAGGAGTGCTCC+AGG | - | tig0018106:174346-174365 | None:intergenic | 50.0% |
| ! | GGAGCACTCCTTAAAACCTC+TGG | + | tig0018106:174346-174365 | Msa1364090:CDS | 50.0% |
| CTTTCTCACAAACTGCCGAG+TGG | + | tig0018106:174569-174588 | Msa1364090:three_prime_UTR | 50.0% | |
| TGGATGCCAAAGCAACCCTG+AGG | + | tig0018106:168848-168867 | Msa1364090:five_prime_UTR | 55.0% | |
| GGATGCCAAAGCAACCCTGA+GGG | + | tig0018106:168849-168868 | Msa1364090:five_prime_UTR | 55.0% | |
| GATGCCAAAGCAACCCTGAG+GGG | + | tig0018106:168850-168869 | Msa1364090:five_prime_UTR | 55.0% | |
| GATTGTCTCTCCTCCCCTCA+GGG | - | tig0018106:168866-168885 | None:intergenic | 55.0% | |
| AGATTGTCTCTCCTCCCCTC+AGG | - | tig0018106:168867-168886 | None:intergenic | 55.0% | |
| AGGGAAGGGGGAAAAGGAAC+GGG | - | tig0018106:169006-169025 | None:intergenic | 55.0% | |
| ACCGAGATAGATCTCGCCGA+AGG | - | tig0018106:169161-169180 | None:intergenic | 55.0% | |
| ! | CTTTTGCCTAACGCGCGACT+CGG | - | tig0018106:171568-171587 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGCAAAAG+CGG | + | tig0018106:171568-171587 | Msa1364090:intron | 55.0% | |
| ! | TACCGCGCCGCGTCAATTTT+TGG | + | tig0018106:171939-171958 | Msa1364090:intron | 55.0% |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | + | tig0018106:171940-171959 | Msa1364090:intron | 55.0% |
| GGCCACCCCAAAAATTGACG+CGG | - | tig0018106:171949-171968 | None:intergenic | 55.0% | |
| AATGGCACGTGCAGAAGGAG+TGG | - | tig0018106:173102-173121 | None:intergenic | 55.0% | |
| ! | GCACGTGCCATTGTAAGTGG+CGG | + | tig0018106:173110-173129 | Msa1364090:intron | 55.0% |
| GTAAGTGGCGGTGTGCTATC+TGG | + | tig0018106:173122-173141 | Msa1364090:intron | 55.0% | |
| GCTGGTGGTAAGCCAGAACT+TGG | - | tig0018106:173221-173240 | None:intergenic | 55.0% | |
| TCAGCACTCACAACAGCTGG+TGG | - | tig0018106:173236-173255 | None:intergenic | 55.0% | |
| CTCTCAGCACTCACAACAGC+TGG | - | tig0018106:173239-173258 | None:intergenic | 55.0% | |
| !! | GTGAGTGCTGAGAGACCATC+AGG | + | tig0018106:173245-173264 | Msa1364090:CDS | 55.0% |
| GGGGAAGATGGTAGACATGC+TGG | + | tig0018106:173502-173521 | Msa1364090:CDS | 55.0% | |
| AACCCTCTCTTCCTCTTGCC+AGG | + | tig0018106:174311-174330 | Msa1364090:CDS | 55.0% | |
| ACCCTCTCTTCCTCTTGCCA+GGG | + | tig0018106:174312-174331 | Msa1364090:CDS | 55.0% | |
| TCCCTGGCAAGAGGAAGAGA+GGG | - | tig0018106:174316-174335 | None:intergenic | 55.0% | |
| ATCCCTGGCAAGAGGAAGAG+AGG | - | tig0018106:174317-174336 | None:intergenic | 55.0% | |
| TCTCTTCCTCTTGCCAGGGA+TGG | + | tig0018106:174316-174335 | Msa1364090:CDS | 55.0% | |
| TCCTCCCCTCAGGGTTGCTT+TGG | - | tig0018106:168857-168876 | None:intergenic | 60.0% | |
| ACTTCCTCATGGGTCTGGGG+AGG | + | tig0018106:170575-170594 | Msa1364090:CDS | 60.0% | |
| GGAACAAAAGCGGGTCAGCG+CGG | + | tig0018106:171589-171608 | Msa1364090:intron | 60.0% | |
| GAACAAAAGCGGGTCAGCGC+GGG | + | tig0018106:171590-171609 | Msa1364090:intron | 60.0% | |
| GGGCAAAAAGCGGGTCAACG+CGG | + | tig0018106:171610-171629 | Msa1364090:intron | 60.0% | |
| GGCAAAAAGCGGGTCAACGC+GGG | + | tig0018106:171611-171630 | Msa1364090:intron | 60.0% | |
| GGGTCAACGCGGGCAAAAAG+CGG | + | tig0018106:171621-171640 | Msa1364090:intron | 60.0% | |
| GGTCAACGCGGGCAAAAAGC+GGG | + | tig0018106:171622-171641 | Msa1364090:intron | 60.0% | |
| ! | GCGGGCGCTTTTACATGACG+CGG | - | tig0018106:171907-171926 | None:intergenic | 60.0% |
| AATTGACGCGGCGCGGTAAG+CGG | - | tig0018106:171937-171956 | None:intergenic | 60.0% | |
| CCCCAAAAATTGACGCGGCG+CGG | - | tig0018106:171944-171963 | None:intergenic | 60.0% | |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | + | tig0018106:171941-171960 | Msa1364090:intron | 60.0% |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | + | tig0018106:171944-171963 | Msa1364090:intron | 60.0% |
| TGAGGGGTAGCCACGACACA+AGG | - | tig0018106:172788-172807 | None:intergenic | 60.0% | |
| ! | TCTGGTGCTGGGCCAAGTTC+TGG | + | tig0018106:173206-173225 | Msa1364090:CDS | 60.0% |
| GGACTACCATCCCTGGCAAG+AGG | - | tig0018106:174325-174344 | None:intergenic | 60.0% | |
| CTTGCCAGGGATGGTAGTCC+TGG | + | tig0018106:174325-174344 | Msa1364090:CDS | 60.0% | |
| TGCTCCAGGACTACCATCCC+TGG | - | tig0018106:174332-174351 | None:intergenic | 60.0% | |
| GCCAAAGCAACCCTGAGGGG+AGG | + | tig0018106:168853-168872 | Msa1364090:five_prime_UTR | 65.0% | |
| GGGTCAGCGCGGGCAAAAAG+CGG | + | tig0018106:171600-171619 | Msa1364090:intron | 65.0% | |
| GGTCAGCGCGGGCAAAAAGC+GGG | + | tig0018106:171601-171620 | Msa1364090:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | - | tig0018106:171936-171955 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | - | tig0018106:171975-171994 | None:intergenic | 65.0% | |
| CTCGCCTCCCCAGACCCATG+AGG | - | tig0018106:170582-170601 | None:intergenic | 70.0% | |
| GGTCTAACGCGGCGCGATCG+CGG | + | tig0018106:171502-171521 | Msa1364090:intron | 70.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | - | tig0018106:171548-171567 | None:intergenic | 70.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | + | tig0018106:171559-171578 | Msa1364090:intron | 70.0% | |
| ! | AACGCGGCGCGATCGCGGCG+CGG | + | tig0018106:171507-171526 | Msa1364090:intron | 80.0% |
| ! | GCGGTAAGCGGGCGCGACGC+GGG | - | tig0018106:171925-171944 | None:intergenic | 80.0% |
| ! | CGCGGTAAGCGGGCGCGACG+CGG | - | tig0018106:171926-171945 | None:intergenic | 80.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | - | tig0018106:171970-171989 | None:intergenic | 80.0% |
| ! | GGCGCGATCGCGGCGCGGAG+CGG | + | tig0018106:171512-171531 | Msa1364090:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018106 | gene | 168738 | 174931 | 168738 | ID=Msa1364090;Name=Msa1364090 |
| tig0018106 | mRNA | 168738 | 174931 | 168738 | ID=Msa1364090-mRNA-1;Parent=Msa1364090;Name=Msa1364090-mRNA-1;_AED=0.14;_eAED=0.14;_QI=365|1|1|1|1|1|14|418|475 |
| tig0018106 | exon | 168738 | 169178 | 168738 | ID=Msa1364090-mRNA-1:exon:13827;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 169281 | 169321 | 169281 | ID=Msa1364090-mRNA-1:exon:13828;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 170102 | 170171 | 170102 | ID=Msa1364090-mRNA-1:exon:13829;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 170281 | 170429 | 170281 | ID=Msa1364090-mRNA-1:exon:13830;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 170514 | 170609 | 170514 | ID=Msa1364090-mRNA-1:exon:13831;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 170707 | 170777 | 170707 | ID=Msa1364090-mRNA-1:exon:13832;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 172304 | 172365 | 172304 | ID=Msa1364090-mRNA-1:exon:13833;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 172463 | 172526 | 172463 | ID=Msa1364090-mRNA-1:exon:13834;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 172611 | 172695 | 172611 | ID=Msa1364090-mRNA-1:exon:13835;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 172784 | 172910 | 172784 | ID=Msa1364090-mRNA-1:exon:13836;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 173039 | 173121 | 173039 | ID=Msa1364090-mRNA-1:exon:13837;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 173203 | 173266 | 173203 | ID=Msa1364090-mRNA-1:exon:13838;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 173500 | 173642 | 173500 | ID=Msa1364090-mRNA-1:exon:13839;Parent=Msa1364090-mRNA-1 |
| tig0018106 | exon | 174217 | 174931 | 174217 | ID=Msa1364090-mRNA-1:exon:13840;Parent=Msa1364090-mRNA-1 |
| tig0018106 | five_prime_UTR | 168738 | 169102 | 168738 | ID=Msa1364090-mRNA-1:five_prime_utr;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 169103 | 169178 | 169103 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 169281 | 169321 | 169281 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 170102 | 170171 | 170102 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 170281 | 170429 | 170281 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 170514 | 170609 | 170514 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 170707 | 170777 | 170707 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 172304 | 172365 | 172304 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 172463 | 172526 | 172463 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 172611 | 172695 | 172611 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 172784 | 172910 | 172784 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 173039 | 173121 | 173039 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 173203 | 173266 | 173203 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 173500 | 173642 | 173500 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | CDS | 174217 | 174513 | 174217 | ID=Msa1364090-mRNA-1:cds;Parent=Msa1364090-mRNA-1 |
| tig0018106 | three_prime_UTR | 174514 | 174931 | 174514 | ID=Msa1364090-mRNA-1:three_prime_utr;Parent=Msa1364090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
