Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093220 | XP_013458118.2 | 94.595 | 74 | 4 | 0 | 1 | 74 | 106 | 179 | 7.36e-42 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093220 | sp|Q9SB75|CSLC5_ARATH | 64.384 | 73 | 26 | 0 | 2 | 74 | 242 | 314 | 1.40e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093220 | A0A396IJQ2 | 94.595 | 74 | 4 | 0 | 1 | 74 | 112 | 185 | 4.09e-42 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0440400 | Msa1093220 | 0.806810 | 6.864615e-50 | -8.615850e-47 |
| Msa1014540 | Msa1093220 | 0.829967 | 3.826334e-55 | -8.615850e-47 |
| Msa1075540 | Msa1093220 | 0.801560 | 8.501522e-49 | -8.615850e-47 |
| Msa1093220 | Msa1100050 | 0.803873 | 2.832199e-49 | -8.615850e-47 |
| Msa1093220 | Msa1244250 | 0.803746 | 3.009616e-49 | -8.615850e-47 |
| Msa1093220 | Msa1277660 | 0.802367 | 5.801462e-49 | -8.615850e-47 |
| Msa0297050 | Msa1093220 | 0.800928 | 1.145010e-48 | -8.615850e-47 |
| Msa0938220 | Msa1093220 | 0.808682 | 2.747596e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093220 | MtrunA17_Chr4g0064791 | 94.595 | 74 | 4 | 0 | 1 | 74 | 112 | 185 | 7.88e-46 | 145 |
| Msa1093220 | MtrunA17_Chr3g0139081 | 71.233 | 73 | 21 | 0 | 2 | 74 | 237 | 309 | 8.16e-32 | 115 |
| Msa1093220 | MtrunA17_Chr4g0000581 | 65.753 | 73 | 25 | 0 | 2 | 74 | 252 | 324 | 4.62e-29 | 107 |
| Msa1093220 | MtrunA17_Chr6g0451381 | 58.904 | 73 | 30 | 0 | 2 | 74 | 218 | 290 | 3.42e-24 | 93.6 |
| Msa1093220 | MtrunA17_Chr3g0135191 | 54.795 | 73 | 33 | 0 | 2 | 74 | 252 | 324 | 1.04e-21 | 86.7 |
| Msa1093220 | MtrunA17_Chr8g0339101 | 54.795 | 73 | 33 | 0 | 2 | 74 | 255 | 327 | 1.20e-20 | 83.6 |
| Msa1093220 | MtrunA17_Chr1g0198111 | 40.506 | 79 | 41 | 1 | 2 | 74 | 109 | 187 | 1.12e-13 | 63.9 |
| Msa1093220 | MtrunA17_Chr1g0179441 | 41.772 | 79 | 40 | 1 | 2 | 74 | 102 | 180 | 1.81e-13 | 63.2 |
| Msa1093220 | MtrunA17_Chr7g0265711 | 42.466 | 73 | 42 | 0 | 2 | 74 | 111 | 183 | 4.91e-13 | 62.0 |
| Msa1093220 | MtrunA17_Chr4g0027221 | 38.356 | 73 | 45 | 0 | 2 | 74 | 111 | 183 | 9.09e-13 | 61.2 |
| Msa1093220 | MtrunA17_Chr1g0179381 | 39.241 | 79 | 42 | 1 | 2 | 74 | 102 | 180 | 5.64e-12 | 58.9 |
| Msa1093220 | MtrunA17_Chr1g0179421 | 39.241 | 79 | 42 | 1 | 2 | 74 | 102 | 180 | 6.46e-12 | 58.9 |
| Msa1093220 | MtrunA17_Chr7g0264621 | 38.356 | 73 | 45 | 0 | 2 | 74 | 107 | 179 | 1.09e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093220 | AT4G31590.1 | 64.384 | 73 | 26 | 0 | 2 | 74 | 242 | 314 | 1.42e-27 | 103 |
| Msa1093220 | AT2G24630.1 | 64.384 | 73 | 26 | 0 | 2 | 74 | 242 | 314 | 3.38e-27 | 102 |
| Msa1093220 | AT2G24630.2 | 64.384 | 73 | 26 | 0 | 2 | 74 | 242 | 314 | 3.38e-27 | 102 |
| Msa1093220 | AT3G28180.1 | 60.274 | 73 | 29 | 0 | 2 | 74 | 214 | 286 | 3.25e-23 | 91.3 |
| Msa1093220 | AT3G07330.1 | 53.425 | 73 | 34 | 0 | 2 | 74 | 236 | 308 | 1.08e-21 | 87.0 |
| Msa1093220 | AT3G07330.2 | 53.425 | 73 | 34 | 0 | 2 | 74 | 236 | 308 | 1.08e-21 | 87.0 |
| Msa1093220 | AT4G07960.1 | 52.055 | 73 | 35 | 0 | 2 | 74 | 256 | 328 | 2.44e-20 | 83.2 |
| Msa1093220 | AT4G07960.2 | 52.055 | 73 | 35 | 0 | 2 | 74 | 256 | 328 | 2.44e-20 | 83.2 |
| Msa1093220 | AT5G03760.1 | 43.038 | 79 | 39 | 1 | 2 | 74 | 112 | 190 | 1.73e-13 | 63.5 |
| Msa1093220 | AT4G13410.2 | 41.096 | 73 | 43 | 0 | 2 | 74 | 126 | 198 | 6.19e-13 | 62.0 |
| Msa1093220 | AT4G13410.1 | 41.096 | 73 | 43 | 0 | 2 | 74 | 126 | 198 | 1.08e-12 | 61.6 |
| Msa1093220 | AT5G22740.1 | 38.356 | 73 | 45 | 0 | 2 | 74 | 112 | 184 | 4.09e-12 | 59.7 |
| Msa1093220 | AT1G24070.2 | 41.667 | 72 | 42 | 0 | 3 | 74 | 138 | 209 | 4.86e-12 | 59.7 |
| Msa1093220 | AT1G24070.1 | 41.667 | 72 | 42 | 0 | 3 | 74 | 138 | 209 | 5.65e-12 | 59.3 |
| Msa1093220 | AT2G35650.1 | 39.744 | 78 | 41 | 1 | 3 | 74 | 135 | 212 | 8.77e-12 | 58.9 |
| Msa1093220 | AT2G35650.4 | 39.744 | 78 | 41 | 1 | 3 | 74 | 63 | 140 | 1.24e-11 | 58.5 |
| Msa1093220 | AT2G35650.2 | 39.744 | 78 | 41 | 1 | 3 | 74 | 63 | 140 | 1.24e-11 | 58.5 |
| Msa1093220 | AT5G16190.1 | 38.356 | 73 | 45 | 0 | 2 | 74 | 28 | 100 | 4.88e-11 | 56.6 |
| Msa1093220 | AT5G16190.2 | 38.356 | 73 | 45 | 0 | 2 | 74 | 89 | 161 | 9.51e-11 | 55.8 |
Find 14 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCACATGGATAATCAATT+TGG | 0.303413 | 7_3:-12748301 | None:intergenic |
| GATCATAGAATGGTTAATTA+AGG | 0.317858 | 7_3:+12748361 | Msa1093220:CDS |
| TCCAGCTTTATATCTGGTCC+TGG | 0.428493 | 7_3:-12748441 | None:intergenic |
| TTACTAATTCAAGTACTTGA+GGG | 0.447277 | 7_3:+12748326 | Msa1093220:CDS |
| TTTACTAATTCAAGTACTTG+AGG | 0.502613 | 7_3:+12748325 | Msa1093220:CDS |
| AGAATGGTTAATTAAGGTTG+AGG | 0.508105 | 7_3:+12748367 | Msa1093220:CDS |
| TCTATCGGCATCGCTTGGCC+AGG | 0.517766 | 7_3:+12748423 | Msa1093220:CDS |
| CATAATCTATCGGCATCGCT+TGG | 0.534866 | 7_3:+12748418 | Msa1093220:CDS |
| GCCAGGACCAGATATAAAGC+TGG | 0.559225 | 7_3:+12748440 | Msa1093220:CDS |
| GGTCTCTAAGTGGAATCTAA+AGG | 0.564907 | 7_3:+12748388 | Msa1093220:CDS |
| AGGCAGTCAACATAATCTAT+CGG | 0.575941 | 7_3:+12748408 | Msa1093220:CDS |
| CTGAAGATGAGATCATAGAA+TGG | 0.594946 | 7_3:+12748351 | Msa1093220:CDS |
| TTAAGGTTGAGGTCTCTAAG+TGG | 0.599181 | 7_3:+12748378 | Msa1093220:CDS |
| TGAATTAGTAAAAGATCACA+TGG | 0.639116 | 7_3:-12748314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAGATATCATTACTTT+AGG | + | chr7_3:12748072-12748091 | Msa1093220:intron | 15.0% |
| !! | ATTATAGATATCATTACTTT+AGG | + | chr7_3:12748072-12748091 | Msa1093220:intron | 15.0% |
| !! | AATTAATTAACACTATTGCA+CGG | - | chr7_3:12747911-12747930 | None:intergenic | 20.0% |
| !! | ATTCATTAAACAACAACAAA+TGG | - | chr7_3:12748169-12748188 | None:intergenic | 20.0% |
| !! | AATTAATTAACACTATTGCA+CGG | - | chr7_3:12747911-12747930 | None:intergenic | 20.0% |
| !! | ATTCATTAAACAACAACAAA+TGG | - | chr7_3:12748169-12748188 | None:intergenic | 20.0% |
| ! | TTGAACTGAATTTAAATCGT+TGG | + | chr7_3:12747538-12747557 | Msa1093220:intron | 25.0% |
| !! | TTTGTTTCTTATCCAATTTG+TGG | + | chr7_3:12747673-12747692 | Msa1093220:intron | 25.0% |
| ! | ATATGTATGCATTTATCCAA+TGG | + | chr7_3:12747785-12747804 | Msa1093220:intron | 25.0% |
| ! | ATAAATGAAACTCAGAAGTT+TGG | - | chr7_3:12747854-12747873 | None:intergenic | 25.0% |
| ! | TGAGTTTCATTTATTCTAAG+AGG | + | chr7_3:12747860-12747879 | Msa1093220:intron | 25.0% |
| ! | TTATAAGCAATCAATGACAT+TGG | + | chr7_3:12748198-12748217 | Msa1093220:intron | 25.0% |
| !! | TTTGTTCATTTTGCACAATT+TGG | + | chr7_3:12748240-12748259 | Msa1093220:intron | 25.0% |
| ! | TGAATTAGTAAAAGATCACA+TGG | - | chr7_3:12748317-12748336 | None:intergenic | 25.0% |
| ! | TTTACTAATTCAAGTACTTG+AGG | + | chr7_3:12748325-12748344 | Msa1093220:CDS | 25.0% |
| ! | TTACTAATTCAAGTACTTGA+GGG | + | chr7_3:12748326-12748345 | Msa1093220:CDS | 25.0% |
| ! | GATCATAGAATGGTTAATTA+AGG | + | chr7_3:12748361-12748380 | Msa1093220:CDS | 25.0% |
| ! | TTGAACTGAATTTAAATCGT+TGG | + | chr7_3:12747538-12747557 | Msa1093220:intron | 25.0% |
| !! | TTTGTTTCTTATCCAATTTG+TGG | + | chr7_3:12747673-12747692 | Msa1093220:intron | 25.0% |
| ! | ATATGTATGCATTTATCCAA+TGG | + | chr7_3:12747785-12747804 | Msa1093220:intron | 25.0% |
| ! | ATAAATGAAACTCAGAAGTT+TGG | - | chr7_3:12747854-12747873 | None:intergenic | 25.0% |
| ! | TGAGTTTCATTTATTCTAAG+AGG | + | chr7_3:12747860-12747879 | Msa1093220:intron | 25.0% |
| ! | TTATAAGCAATCAATGACAT+TGG | + | chr7_3:12748198-12748217 | Msa1093220:intron | 25.0% |
| !! | TTTGTTCATTTTGCACAATT+TGG | + | chr7_3:12748240-12748259 | Msa1093220:intron | 25.0% |
| ! | TGAATTAGTAAAAGATCACA+TGG | - | chr7_3:12748317-12748336 | None:intergenic | 25.0% |
| ! | TTTACTAATTCAAGTACTTG+AGG | + | chr7_3:12748325-12748344 | Msa1093220:CDS | 25.0% |
| ! | TTACTAATTCAAGTACTTGA+GGG | + | chr7_3:12748326-12748345 | Msa1093220:CDS | 25.0% |
| ! | GATCATAGAATGGTTAATTA+AGG | + | chr7_3:12748361-12748380 | Msa1093220:CDS | 25.0% |
| TGAATTTAAATCGTTGGCAT+TGG | + | chr7_3:12747544-12747563 | Msa1093220:intron | 30.0% | |
| TCAAAATGGCTTATATTGCT+TGG | + | chr7_3:12747638-12747657 | Msa1093220:intron | 30.0% | |
| AATTTAAGAAGGTTAAGCCA+AGG | + | chr7_3:12747724-12747743 | Msa1093220:intron | 30.0% | |
| ! | ATGCATTTATCCAATGGTTT+TGG | + | chr7_3:12747791-12747810 | Msa1093220:intron | 30.0% |
| ! | TTAATTCAAGCTTTAGCACA+GGG | - | chr7_3:12748036-12748055 | None:intergenic | 30.0% |
| TCAATGACATTGGCAAAATA+TGG | + | chr7_3:12748208-12748227 | Msa1093220:intron | 30.0% | |
| GATCACATGGATAATCAATT+TGG | - | chr7_3:12748304-12748323 | None:intergenic | 30.0% | |
| AGAATGGTTAATTAAGGTTG+AGG | + | chr7_3:12748367-12748386 | Msa1093220:CDS | 30.0% | |
| TGAATTTAAATCGTTGGCAT+TGG | + | chr7_3:12747544-12747563 | Msa1093220:intron | 30.0% | |
| TCAAAATGGCTTATATTGCT+TGG | + | chr7_3:12747638-12747657 | Msa1093220:intron | 30.0% | |
| AATTTAAGAAGGTTAAGCCA+AGG | + | chr7_3:12747724-12747743 | Msa1093220:intron | 30.0% | |
| ! | ATGCATTTATCCAATGGTTT+TGG | + | chr7_3:12747791-12747810 | Msa1093220:intron | 30.0% |
| ! | TTAATTCAAGCTTTAGCACA+GGG | - | chr7_3:12748036-12748055 | None:intergenic | 30.0% |
| TCAATGACATTGGCAAAATA+TGG | + | chr7_3:12748208-12748227 | Msa1093220:intron | 30.0% | |
| GATCACATGGATAATCAATT+TGG | - | chr7_3:12748304-12748323 | None:intergenic | 30.0% | |
| AGAATGGTTAATTAAGGTTG+AGG | + | chr7_3:12748367-12748386 | Msa1093220:CDS | 30.0% | |
| !! | CATTTTGAAAGACCCTGAAT+GGG | - | chr7_3:12747626-12747645 | None:intergenic | 35.0% |
| ! | GACTGTATGCTTCTTTGTTT+GGG | + | chr7_3:12747695-12747714 | Msa1093220:intron | 35.0% |
| ! | ACTGTATGCTTCTTTGTTTG+GGG | + | chr7_3:12747696-12747715 | Msa1093220:intron | 35.0% |
| ! | TTGGGGTGTCAAATTTAAGA+AGG | + | chr7_3:12747713-12747732 | Msa1093220:intron | 35.0% |
| TCAACATCATCAACCTTGAA+TGG | - | chr7_3:12747762-12747781 | None:intergenic | 35.0% | |
| !! | TTCAAGGTTGATGATGTTGA+AGG | + | chr7_3:12747762-12747781 | Msa1093220:intron | 35.0% |
| GGAATTTGAACCAAAACCAT+TGG | - | chr7_3:12747804-12747823 | None:intergenic | 35.0% | |
| AGGTTGCAGATAATTCTCAA+TGG | - | chr7_3:12748008-12748027 | None:intergenic | 35.0% | |
| ! | GTTAATTCAAGCTTTAGCAC+AGG | - | chr7_3:12748037-12748056 | None:intergenic | 35.0% |
| !! | TTGCACAATTTGGCTTTATC+AGG | + | chr7_3:12748250-12748269 | Msa1093220:intron | 35.0% |
| CTGAAGATGAGATCATAGAA+TGG | + | chr7_3:12748351-12748370 | Msa1093220:CDS | 35.0% | |
| AGGCAGTCAACATAATCTAT+CGG | + | chr7_3:12748408-12748427 | Msa1093220:CDS | 35.0% | |
| !! | CAGTTTTCCAGCTTTATATC+TGG | - | chr7_3:12748450-12748469 | None:intergenic | 35.0% |
| !! | CATTTTGAAAGACCCTGAAT+GGG | - | chr7_3:12747626-12747645 | None:intergenic | 35.0% |
| ! | GACTGTATGCTTCTTTGTTT+GGG | + | chr7_3:12747695-12747714 | Msa1093220:intron | 35.0% |
| ! | ACTGTATGCTTCTTTGTTTG+GGG | + | chr7_3:12747696-12747715 | Msa1093220:intron | 35.0% |
| ! | TTGGGGTGTCAAATTTAAGA+AGG | + | chr7_3:12747713-12747732 | Msa1093220:intron | 35.0% |
| TCAACATCATCAACCTTGAA+TGG | - | chr7_3:12747762-12747781 | None:intergenic | 35.0% | |
| !! | TTCAAGGTTGATGATGTTGA+AGG | + | chr7_3:12747762-12747781 | Msa1093220:intron | 35.0% |
| GGAATTTGAACCAAAACCAT+TGG | - | chr7_3:12747804-12747823 | None:intergenic | 35.0% | |
| AGGTTGCAGATAATTCTCAA+TGG | - | chr7_3:12748008-12748027 | None:intergenic | 35.0% | |
| ! | GTTAATTCAAGCTTTAGCAC+AGG | - | chr7_3:12748037-12748056 | None:intergenic | 35.0% |
| !! | TTGCACAATTTGGCTTTATC+AGG | + | chr7_3:12748250-12748269 | Msa1093220:intron | 35.0% |
| CTGAAGATGAGATCATAGAA+TGG | + | chr7_3:12748351-12748370 | Msa1093220:CDS | 35.0% | |
| AGGCAGTCAACATAATCTAT+CGG | + | chr7_3:12748408-12748427 | Msa1093220:CDS | 35.0% | |
| !! | CAGTTTTCCAGCTTTATATC+TGG | - | chr7_3:12748450-12748469 | None:intergenic | 35.0% |
| TTGGTTCAGAAAATTCTCGC+TGG | + | chr7_3:12747563-12747582 | Msa1093220:intron | 40.0% | |
| TTCAGAAAATTCTCGCTGGA+GGG | + | chr7_3:12747567-12747586 | Msa1093220:intron | 40.0% | |
| !! | CCATTTTGAAAGACCCTGAA+TGG | - | chr7_3:12747627-12747646 | None:intergenic | 40.0% |
| CCATTCAGGGTCTTTCAAAA+TGG | + | chr7_3:12747624-12747643 | Msa1093220:intron | 40.0% | |
| GAAGCATACAGTCCACAAAT+TGG | - | chr7_3:12747688-12747707 | None:intergenic | 40.0% | |
| GGACTGTATGCTTCTTTGTT+TGG | + | chr7_3:12747694-12747713 | Msa1093220:intron | 40.0% | |
| AGGTTAAGCCAAGGATTAAC+AGG | + | chr7_3:12747733-12747752 | Msa1093220:intron | 40.0% | |
| GGTTAAGCCAAGGATTAACA+GGG | + | chr7_3:12747734-12747753 | Msa1093220:intron | 40.0% | |
| AATGGATCCCTGTTAATCCT+TGG | - | chr7_3:12747744-12747763 | None:intergenic | 40.0% | |
| GATTAACAGGGATCCATTCA+AGG | + | chr7_3:12747746-12747765 | Msa1093220:intron | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | + | chr7_3:12747821-12747840 | Msa1093220:intron | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | - | chr7_3:12747825-12747844 | None:intergenic | 40.0% | |
| TTAAGGTTGAGGTCTCTAAG+TGG | + | chr7_3:12748378-12748397 | Msa1093220:CDS | 40.0% | |
| GGTCTCTAAGTGGAATCTAA+AGG | + | chr7_3:12748388-12748407 | Msa1093220:CDS | 40.0% | |
| TTGGTTCAGAAAATTCTCGC+TGG | + | chr7_3:12747563-12747582 | Msa1093220:intron | 40.0% | |
| TTCAGAAAATTCTCGCTGGA+GGG | + | chr7_3:12747567-12747586 | Msa1093220:intron | 40.0% | |
| !! | CCATTTTGAAAGACCCTGAA+TGG | - | chr7_3:12747627-12747646 | None:intergenic | 40.0% |
| CCATTCAGGGTCTTTCAAAA+TGG | + | chr7_3:12747624-12747643 | Msa1093220:intron | 40.0% | |
| GAAGCATACAGTCCACAAAT+TGG | - | chr7_3:12747688-12747707 | None:intergenic | 40.0% | |
| GGACTGTATGCTTCTTTGTT+TGG | + | chr7_3:12747694-12747713 | Msa1093220:intron | 40.0% | |
| AGGTTAAGCCAAGGATTAAC+AGG | + | chr7_3:12747733-12747752 | Msa1093220:intron | 40.0% | |
| GGTTAAGCCAAGGATTAACA+GGG | + | chr7_3:12747734-12747753 | Msa1093220:intron | 40.0% | |
| AATGGATCCCTGTTAATCCT+TGG | - | chr7_3:12747744-12747763 | None:intergenic | 40.0% | |
| GATTAACAGGGATCCATTCA+AGG | + | chr7_3:12747746-12747765 | Msa1093220:intron | 40.0% | |
| TCCAATGTGCAATGAGAAAG+AGG | + | chr7_3:12747821-12747840 | Msa1093220:intron | 40.0% | |
| ACCTCTTTCTCATTGCACAT+TGG | - | chr7_3:12747825-12747844 | None:intergenic | 40.0% | |
| TTAAGGTTGAGGTCTCTAAG+TGG | + | chr7_3:12748378-12748397 | Msa1093220:CDS | 40.0% | |
| GGTCTCTAAGTGGAATCTAA+AGG | + | chr7_3:12748388-12748407 | Msa1093220:CDS | 40.0% | |
| GTTCAGAAAATTCTCGCTGG+AGG | + | chr7_3:12747566-12747585 | Msa1093220:intron | 45.0% | |
| TACATTGCTCCACCCATTCA+GGG | + | chr7_3:12747611-12747630 | Msa1093220:intron | 45.0% | |
| TTTGAAAGACCCTGAATGGG+TGG | - | chr7_3:12747623-12747642 | None:intergenic | 45.0% | |
| ACTATTGCACGGAAACTTGC+TGG | - | chr7_3:12747900-12747919 | None:intergenic | 45.0% | |
| GATTTCACAGATGTCGCAAG+AGG | + | chr7_3:12747948-12747967 | Msa1093220:intron | 45.0% | |
| ! | AGCTTTAGCACAGGGAATAG+AGG | - | chr7_3:12748028-12748047 | None:intergenic | 45.0% |
| CATAATCTATCGGCATCGCT+TGG | + | chr7_3:12748418-12748437 | Msa1093220:CDS | 45.0% | |
| ! | TCCAGCTTTATATCTGGTCC+TGG | - | chr7_3:12748444-12748463 | None:intergenic | 45.0% |
| GTTCAGAAAATTCTCGCTGG+AGG | + | chr7_3:12747566-12747585 | Msa1093220:intron | 45.0% | |
| TACATTGCTCCACCCATTCA+GGG | + | chr7_3:12747611-12747630 | Msa1093220:intron | 45.0% | |
| TTTGAAAGACCCTGAATGGG+TGG | - | chr7_3:12747623-12747642 | None:intergenic | 45.0% | |
| ACTATTGCACGGAAACTTGC+TGG | - | chr7_3:12747900-12747919 | None:intergenic | 45.0% | |
| GATTTCACAGATGTCGCAAG+AGG | + | chr7_3:12747948-12747967 | Msa1093220:intron | 45.0% | |
| ! | AGCTTTAGCACAGGGAATAG+AGG | - | chr7_3:12748028-12748047 | None:intergenic | 45.0% |
| CATAATCTATCGGCATCGCT+TGG | + | chr7_3:12748418-12748437 | Msa1093220:CDS | 45.0% | |
| ! | TCCAGCTTTATATCTGGTCC+TGG | - | chr7_3:12748444-12748463 | None:intergenic | 45.0% |
| CTACATTGCTCCACCCATTC+AGG | + | chr7_3:12747610-12747629 | Msa1093220:intron | 50.0% | |
| GCTTTATCAGGTGTAGCAGC+AGG | + | chr7_3:12748262-12748281 | Msa1093220:intron | 50.0% | |
| GCCAGGACCAGATATAAAGC+TGG | + | chr7_3:12748440-12748459 | Msa1093220:CDS | 50.0% | |
| CTACATTGCTCCACCCATTC+AGG | + | chr7_3:12747610-12747629 | Msa1093220:intron | 50.0% | |
| GCTTTATCAGGTGTAGCAGC+AGG | + | chr7_3:12748262-12748281 | Msa1093220:intron | 50.0% | |
| GCCAGGACCAGATATAAAGC+TGG | + | chr7_3:12748440-12748459 | Msa1093220:CDS | 50.0% | |
| TCTATCGGCATCGCTTGGCC+AGG | + | chr7_3:12748423-12748442 | Msa1093220:CDS | 60.0% | |
| TCTATCGGCATCGCTTGGCC+AGG | + | chr7_3:12748423-12748442 | Msa1093220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 12747475 | 12748493 | 12747475 | ID=Msa1093220;Name=Msa1093220 |
| chr7_3 | mRNA | 12747475 | 12748493 | 12747475 | ID=Msa1093220-mRNA-1;Parent=Msa1093220;Name=Msa1093220-mRNA-1;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|0|0|2|0|74 |
| chr7_3 | exon | 12747475 | 12747480 | 12747475 | ID=Msa1093220-mRNA-1:exon:3011;Parent=Msa1093220-mRNA-1 |
| chr7_3 | exon | 12748278 | 12748493 | 12748278 | ID=Msa1093220-mRNA-1:exon:3012;Parent=Msa1093220-mRNA-1 |
| chr7_3 | CDS | 12747475 | 12747480 | 12747475 | ID=Msa1093220-mRNA-1:cds;Parent=Msa1093220-mRNA-1 |
| chr7_3 | CDS | 12748278 | 12748493 | 12748278 | ID=Msa1093220-mRNA-1:cds;Parent=Msa1093220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
