AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0938220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938220 MtrunA17_Chr6g0454081 99.194 124 1 0 11 134 45 168 6.04e-88 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0938220 AT3G29280.1 66.667 132 42 1 1 130 43 174 1.06e-62 190
Msa0938220 AT3G29280.2 62.411 141 42 2 1 130 43 183 1.41e-59 182

Find 44 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATTTCTGGGCTGGATTT+TGG 0.147980 6_3:+9973863 Msa0938220:CDS
CATTCTCTTTACAGTAATTT+TGG 0.172775 6_3:+9972694 Msa0938220:five_prime_UTR
GTTGGAAAGATGACAATTTC+TGG 0.233986 6_3:+9973851 Msa0938220:CDS
TATTTAACTTAATAGCTTAA+TGG 0.248649 6_3:-9973943 None:intergenic
ATTTAACTTAATAGCTTAAT+GGG 0.305991 6_3:-9973942 None:intergenic
GCATCCATCCCAGCTAGTTT+TGG 0.340791 6_3:-9973429 None:intergenic
CGAGCACATGTTTCTATTCC+AGG 0.353050 6_3:-9974047 None:intergenic
CACAGGTATGGTTGAACAAA+AGG 0.398980 6_3:+9973320 Msa0938220:CDS
AAGTTCATGCCAAAACTAGC+TGG 0.442466 6_3:+9973420 Msa0938220:CDS
TTGGAAAGATGACAATTTCT+GGG 0.446900 6_3:+9973852 Msa0938220:CDS
CAACAAGGTAGCATACTAAA+GGG 0.454707 6_3:-9972624 None:intergenic
ATGCAGCTGAAGACCACATC+AGG 0.457770 6_3:+9973397 Msa0938220:CDS
ATGTGCTCGTCACTTATTGA+AGG 0.469025 6_3:+9974061 Msa0938220:three_prime_UTR
TCAACAAGGTAGCATACTAA+AGG 0.472790 6_3:-9972625 None:intergenic
GTGCGAAAGGGAATGCAGTA+AGG 0.476356 6_3:+9972789 Msa0938220:CDS
CAAAATTACTGTAAAGAGAA+TGG 0.477497 6_3:-9972693 None:intergenic
AAAGATGACAATTTCTGGGC+TGG 0.478819 6_3:+9973856 Msa0938220:CDS
CACTGCATTGATCATGCTCA+TGG 0.480055 6_3:+9972992 Msa0938220:CDS
TTGAATTATGCAGTTAACGT+TGG 0.489090 6_3:+9973833 Msa0938220:intron
AAACTATTCTGTAGAAAGGT+AGG 0.495438 6_3:+9973998 Msa0938220:three_prime_UTR
ATTGAATAATTACTTACGTA+TGG 0.499164 6_3:+9972732 Msa0938220:exon
GCAGTAAGGGTGAGGACTAT+CGG 0.514678 6_3:+9972803 Msa0938220:CDS
TAGAAAACTATTCTGTAGAA+AGG 0.514941 6_3:+9973994 Msa0938220:three_prime_UTR
TTGGCATGAACTTCCTGATG+TGG 0.518276 6_3:-9973410 None:intergenic
TGAAAGAATTGGAGTGCGAA+AGG 0.552769 6_3:+9972776 Msa0938220:CDS
CATGCCAAAACTAGCTGGGA+TGG 0.557559 6_3:+9973425 Msa0938220:CDS
GGTATGGTTGAACAAAAGGA+TGG 0.563367 6_3:+9973324 Msa0938220:CDS
GGATAAGGAGATCACAGGTA+TGG 0.582254 6_3:+9973308 Msa0938220:CDS
GAAAGAATTGGAGTGCGAAA+GGG 0.583284 6_3:+9972777 Msa0938220:CDS
AAGGGAATGCAGTAAGGGTG+AGG 0.592308 6_3:+9972795 Msa0938220:CDS
GCCACTGTTGTGGAGTGCAA+AGG 0.593450 6_3:+9972950 Msa0938220:CDS
AGTTCATGCCAAAACTAGCT+GGG 0.594981 6_3:+9973421 Msa0938220:CDS
TGCGAAAGGGAATGCAGTAA+GGG 0.601067 6_3:+9972790 Msa0938220:CDS
ACTGCATTGATCATGCTCAT+GGG 0.609253 6_3:+9972993 Msa0938220:CDS
AGTTGGGATAAGGAGATCAC+AGG 0.611502 6_3:+9973303 Msa0938220:intron
TCTCATGATTCTGCTAAGTG+AGG 0.620530 6_3:+9972670 Msa0938220:five_prime_UTR
ACCTTTGCACTCCACAACAG+TGG 0.620667 6_3:-9972951 None:intergenic
AAAAGAACAAGCCACTGTTG+TGG 0.622805 6_3:+9972940 Msa0938220:CDS
CATGAGCATGATCAATGCAG+TGG 0.642794 6_3:-9972991 None:intergenic
CTAGCTGGGATGGATGCTGT+TGG 0.649663 6_3:+9973435 Msa0938220:CDS
GTATGGTTGAACAAAAGGAT+GGG 0.653224 6_3:+9973325 Msa0938220:CDS
GCTGTGACTATCGTCTCTCA+AGG 0.653772 6_3:+9972592 Msa0938220:five_prime_UTR
AACATACAAATTAATCAACA+AGG 0.684646 6_3:-9972639 None:intergenic
GTGTGAGACACTGAAAGCTG+AGG 0.748209 6_3:+9973374 Msa0938220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTTTTATAACTCTAT+TGG + chr6_3:9973504-9973523 Msa0938220:intron 15.0%
!!! AAAACCTTAAAATATTTTGA+AGG - chr6_3:9973653-9973672 None:intergenic 15.0%
!!! ATTTAACTTAATAGCTTAAT+GGG - chr6_3:9973945-9973964 None:intergenic 15.0%
!!! TATTTAACTTAATAGCTTAA+TGG - chr6_3:9973946-9973965 None:intergenic 15.0%
!!! TTACTTTTTTATAACTCTAT+TGG + chr6_3:9973504-9973523 Msa0938220:intron 15.0%
!!! AAAACCTTAAAATATTTTGA+AGG - chr6_3:9973653-9973672 None:intergenic 15.0%
!!! ATTTAACTTAATAGCTTAAT+GGG - chr6_3:9973945-9973964 None:intergenic 15.0%
!!! TATTTAACTTAATAGCTTAA+TGG - chr6_3:9973946-9973965 None:intergenic 15.0%
!! AACATACAAATTAATCAACA+AGG - chr6_3:9972642-9972661 None:intergenic 20.0%
!! ATTGAATAATTACTTACGTA+TGG + chr6_3:9972732-9972751 Msa0938220:exon 20.0%
!! CTGTTATATCAAAAACATAT+AGG - chr6_3:9972915-9972934 None:intergenic 20.0%
!! TAGGAATCAAAATAAAAATC+TGG + chr6_3:9973080-9973099 Msa0938220:intron 20.0%
!! TAATGTAATCAAAGAGAAAT+CGG - chr6_3:9973241-9973260 None:intergenic 20.0%
!!! AAGTCCTTCAAAATATTTTA+AGG + chr6_3:9973646-9973665 Msa0938220:intron 20.0%
!! AACATACAAATTAATCAACA+AGG - chr6_3:9972642-9972661 None:intergenic 20.0%
!! ATTGAATAATTACTTACGTA+TGG + chr6_3:9972732-9972751 Msa0938220:exon 20.0%
!! CTGTTATATCAAAAACATAT+AGG - chr6_3:9972915-9972934 None:intergenic 20.0%
!! TAGGAATCAAAATAAAAATC+TGG + chr6_3:9973080-9973099 Msa0938220:intron 20.0%
!! TAATGTAATCAAAGAGAAAT+CGG - chr6_3:9973241-9973260 None:intergenic 20.0%
!!! AAGTCCTTCAAAATATTTTA+AGG + chr6_3:9973646-9973665 Msa0938220:intron 20.0%
! CAAAATTACTGTAAAGAGAA+TGG - chr6_3:9972696-9972715 None:intergenic 25.0%
!! CATTCTCTTTACAGTAATTT+TGG + chr6_3:9972694-9972713 Msa0938220:five_prime_UTR 25.0%
!!! CTTTTTTATGGTGAAAGAAT+TGG + chr6_3:9972765-9972784 Msa0938220:CDS 25.0%
!! TTATTAGTTTCATGTCAGTT+CGG + chr6_3:9973539-9973558 Msa0938220:intron 25.0%
! TAGAAAACTATTCTGTAGAA+AGG + chr6_3:9973994-9974013 Msa0938220:three_prime_UTR 25.0%
! CAAAATTACTGTAAAGAGAA+TGG - chr6_3:9972696-9972715 None:intergenic 25.0%
!! CATTCTCTTTACAGTAATTT+TGG + chr6_3:9972694-9972713 Msa0938220:five_prime_UTR 25.0%
!!! CTTTTTTATGGTGAAAGAAT+TGG + chr6_3:9972765-9972784 Msa0938220:CDS 25.0%
!! TTATTAGTTTCATGTCAGTT+CGG + chr6_3:9973539-9973558 Msa0938220:intron 25.0%
! TAGAAAACTATTCTGTAGAA+AGG + chr6_3:9973994-9974013 Msa0938220:three_prime_UTR 25.0%
TTTCACCATAAAAAAGACAG+AGG - chr6_3:9972761-9972780 None:intergenic 30.0%
TTCTACTCAAGACAAACTAT+AGG + chr6_3:9973061-9973080 Msa0938220:intron 30.0%
!! AGAAATCGGTTTGTAAAACT+AGG - chr6_3:9973227-9973246 None:intergenic 30.0%
TGCAAAACACACAATTTGTA+AGG - chr6_3:9973269-9973288 None:intergenic 30.0%
! CATTCACCTTTTTAACAGTT+GGG + chr6_3:9973287-9973306 Msa0938220:intron 30.0%
CATTTAAGCAAATCAGAACT+AGG - chr6_3:9973775-9973794 None:intergenic 30.0%
! CTTGACTCTTATATTTTGCT+TGG + chr6_3:9973806-9973825 Msa0938220:intron 30.0%
TTGAATTATGCAGTTAACGT+TGG + chr6_3:9973833-9973852 Msa0938220:intron 30.0%
TTGGAAAGATGACAATTTCT+GGG + chr6_3:9973852-9973871 Msa0938220:CDS 30.0%
AAACTATTCTGTAGAAAGGT+AGG + chr6_3:9973998-9974017 Msa0938220:three_prime_UTR 30.0%
!!! CTATTCCAGGATGATTTTTT+GGG - chr6_3:9974037-9974056 None:intergenic 30.0%
!!! TCTATTCCAGGATGATTTTT+TGG - chr6_3:9974038-9974057 None:intergenic 30.0%
TTTCACCATAAAAAAGACAG+AGG - chr6_3:9972761-9972780 None:intergenic 30.0%
TTCTACTCAAGACAAACTAT+AGG + chr6_3:9973061-9973080 Msa0938220:intron 30.0%
!! AGAAATCGGTTTGTAAAACT+AGG - chr6_3:9973227-9973246 None:intergenic 30.0%
TGCAAAACACACAATTTGTA+AGG - chr6_3:9973269-9973288 None:intergenic 30.0%
! CATTCACCTTTTTAACAGTT+GGG + chr6_3:9973287-9973306 Msa0938220:intron 30.0%
CATTTAAGCAAATCAGAACT+AGG - chr6_3:9973775-9973794 None:intergenic 30.0%
! CTTGACTCTTATATTTTGCT+TGG + chr6_3:9973806-9973825 Msa0938220:intron 30.0%
TTGAATTATGCAGTTAACGT+TGG + chr6_3:9973833-9973852 Msa0938220:intron 30.0%
TTGGAAAGATGACAATTTCT+GGG + chr6_3:9973852-9973871 Msa0938220:CDS 30.0%
AAACTATTCTGTAGAAAGGT+AGG + chr6_3:9973998-9974017 Msa0938220:three_prime_UTR 30.0%
!!! CTATTCCAGGATGATTTTTT+GGG - chr6_3:9974037-9974056 None:intergenic 30.0%
!!! TCTATTCCAGGATGATTTTT+TGG - chr6_3:9974038-9974057 None:intergenic 30.0%
CAACAAGGTAGCATACTAAA+GGG - chr6_3:9972627-9972646 None:intergenic 35.0%
TCAACAAGGTAGCATACTAA+AGG - chr6_3:9972628-9972647 None:intergenic 35.0%
!!! GGTTTCCTCTGTCTTTTTTA+TGG + chr6_3:9972753-9972772 Msa0938220:CDS 35.0%
GTTTGTAAAACTAGGTACAG+AGG - chr6_3:9973219-9973238 None:intergenic 35.0%
! GCATTCACCTTTTTAACAGT+TGG + chr6_3:9973286-9973305 Msa0938220:intron 35.0%
CCTTATCCCAACTGTTAAAA+AGG - chr6_3:9973296-9973315 None:intergenic 35.0%
! CCTTTTTAACAGTTGGGATA+AGG + chr6_3:9973293-9973312 Msa0938220:intron 35.0%
GTATGGTTGAACAAAAGGAT+GGG + chr6_3:9973325-9973344 Msa0938220:CDS 35.0%
! GACTCTTATATTTTGCTTGG+TGG + chr6_3:9973809-9973828 Msa0938220:intron 35.0%
GTTGGAAAGATGACAATTTC+TGG + chr6_3:9973851-9973870 Msa0938220:CDS 35.0%
CAACAAGGTAGCATACTAAA+GGG - chr6_3:9972627-9972646 None:intergenic 35.0%
TCAACAAGGTAGCATACTAA+AGG - chr6_3:9972628-9972647 None:intergenic 35.0%
!!! GGTTTCCTCTGTCTTTTTTA+TGG + chr6_3:9972753-9972772 Msa0938220:CDS 35.0%
GTTTGTAAAACTAGGTACAG+AGG - chr6_3:9973219-9973238 None:intergenic 35.0%
! GCATTCACCTTTTTAACAGT+TGG + chr6_3:9973286-9973305 Msa0938220:intron 35.0%
CCTTATCCCAACTGTTAAAA+AGG - chr6_3:9973296-9973315 None:intergenic 35.0%
! CCTTTTTAACAGTTGGGATA+AGG + chr6_3:9973293-9973312 Msa0938220:intron 35.0%
GTATGGTTGAACAAAAGGAT+GGG + chr6_3:9973325-9973344 Msa0938220:CDS 35.0%
! GACTCTTATATTTTGCTTGG+TGG + chr6_3:9973809-9973828 Msa0938220:intron 35.0%
GTTGGAAAGATGACAATTTC+TGG + chr6_3:9973851-9973870 Msa0938220:CDS 35.0%
TCTCATGATTCTGCTAAGTG+AGG + chr6_3:9972670-9972689 Msa0938220:five_prime_UTR 40.0%
TGAAAGAATTGGAGTGCGAA+AGG + chr6_3:9972776-9972795 Msa0938220:CDS 40.0%
GAAAGAATTGGAGTGCGAAA+GGG + chr6_3:9972777-9972796 Msa0938220:CDS 40.0%
AAAAGAACAAGCCACTGTTG+TGG + chr6_3:9972940-9972959 Msa0938220:CDS 40.0%
! ACTGCATTGATCATGCTCAT+GGG + chr6_3:9972993-9973012 Msa0938220:CDS 40.0%
CCACAAGATGATCAATGTTG+TGG - chr6_3:9973040-9973059 None:intergenic 40.0%
CCACAACATTGATCATCTTG+TGG + chr6_3:9973037-9973056 Msa0938220:intron 40.0%
AAACTAGGTACAGAGGACAA+TGG - chr6_3:9973212-9973231 None:intergenic 40.0%
CACAGGTATGGTTGAACAAA+AGG + chr6_3:9973320-9973339 Msa0938220:CDS 40.0%
GGTATGGTTGAACAAAAGGA+TGG + chr6_3:9973324-9973343 Msa0938220:CDS 40.0%
AAGTTCATGCCAAAACTAGC+TGG + chr6_3:9973420-9973439 Msa0938220:CDS 40.0%
AGTTCATGCCAAAACTAGCT+GGG + chr6_3:9973421-9973440 Msa0938220:CDS 40.0%
TTCAGTTGTGACAGTTGGAA+CGG + chr6_3:9973562-9973581 Msa0938220:intron 40.0%
! AAAGATGACAATTTCTGGGC+TGG + chr6_3:9973856-9973875 Msa0938220:CDS 40.0%
!! ACAATTTCTGGGCTGGATTT+TGG + chr6_3:9973863-9973882 Msa0938220:CDS 40.0%
GTTTGCCCAAAAAATCATCC+TGG + chr6_3:9974029-9974048 Msa0938220:three_prime_UTR 40.0%
ATGTGCTCGTCACTTATTGA+AGG + chr6_3:9974061-9974080 Msa0938220:three_prime_UTR 40.0%
CTCGTCACTTATTGAAGGAA+TGG + chr6_3:9974066-9974085 Msa0938220:three_prime_UTR 40.0%
TCTCATGATTCTGCTAAGTG+AGG + chr6_3:9972670-9972689 Msa0938220:five_prime_UTR 40.0%
TGAAAGAATTGGAGTGCGAA+AGG + chr6_3:9972776-9972795 Msa0938220:CDS 40.0%
GAAAGAATTGGAGTGCGAAA+GGG + chr6_3:9972777-9972796 Msa0938220:CDS 40.0%
AAAAGAACAAGCCACTGTTG+TGG + chr6_3:9972940-9972959 Msa0938220:CDS 40.0%
! ACTGCATTGATCATGCTCAT+GGG + chr6_3:9972993-9973012 Msa0938220:CDS 40.0%
CCACAAGATGATCAATGTTG+TGG - chr6_3:9973040-9973059 None:intergenic 40.0%
CCACAACATTGATCATCTTG+TGG + chr6_3:9973037-9973056 Msa0938220:intron 40.0%
AAACTAGGTACAGAGGACAA+TGG - chr6_3:9973212-9973231 None:intergenic 40.0%
CACAGGTATGGTTGAACAAA+AGG + chr6_3:9973320-9973339 Msa0938220:CDS 40.0%
GGTATGGTTGAACAAAAGGA+TGG + chr6_3:9973324-9973343 Msa0938220:CDS 40.0%
AAGTTCATGCCAAAACTAGC+TGG + chr6_3:9973420-9973439 Msa0938220:CDS 40.0%
AGTTCATGCCAAAACTAGCT+GGG + chr6_3:9973421-9973440 Msa0938220:CDS 40.0%
TTCAGTTGTGACAGTTGGAA+CGG + chr6_3:9973562-9973581 Msa0938220:intron 40.0%
! AAAGATGACAATTTCTGGGC+TGG + chr6_3:9973856-9973875 Msa0938220:CDS 40.0%
!! ACAATTTCTGGGCTGGATTT+TGG + chr6_3:9973863-9973882 Msa0938220:CDS 40.0%
GTTTGCCCAAAAAATCATCC+TGG + chr6_3:9974029-9974048 Msa0938220:three_prime_UTR 40.0%
ATGTGCTCGTCACTTATTGA+AGG + chr6_3:9974061-9974080 Msa0938220:three_prime_UTR 40.0%
TGCGAAAGGGAATGCAGTAA+GGG + chr6_3:9972790-9972809 Msa0938220:CDS 45.0%
CATGAGCATGATCAATGCAG+TGG - chr6_3:9972994-9973013 None:intergenic 45.0%
! CACTGCATTGATCATGCTCA+TGG + chr6_3:9972992-9973011 Msa0938220:CDS 45.0%
AGGTACAGAGGACAATGGAT+TGG - chr6_3:9973207-9973226 None:intergenic 45.0%
AGTTGGGATAAGGAGATCAC+AGG + chr6_3:9973303-9973322 Msa0938220:intron 45.0%
GGATAAGGAGATCACAGGTA+TGG + chr6_3:9973308-9973327 Msa0938220:CDS 45.0%
TTGGCATGAACTTCCTGATG+TGG - chr6_3:9973413-9973432 None:intergenic 45.0%
TTCGGTTCAGTTGTGACAGT+TGG + chr6_3:9973557-9973576 Msa0938220:intron 45.0%
! CGAGCACATGTTTCTATTCC+AGG - chr6_3:9974050-9974069 None:intergenic 45.0%
TGCGAAAGGGAATGCAGTAA+GGG + chr6_3:9972790-9972809 Msa0938220:CDS 45.0%
CATGAGCATGATCAATGCAG+TGG - chr6_3:9972994-9973013 None:intergenic 45.0%
! CACTGCATTGATCATGCTCA+TGG + chr6_3:9972992-9973011 Msa0938220:CDS 45.0%
AGGTACAGAGGACAATGGAT+TGG - chr6_3:9973207-9973226 None:intergenic 45.0%
AGTTGGGATAAGGAGATCAC+AGG + chr6_3:9973303-9973322 Msa0938220:intron 45.0%
GGATAAGGAGATCACAGGTA+TGG + chr6_3:9973308-9973327 Msa0938220:CDS 45.0%
TTGGCATGAACTTCCTGATG+TGG - chr6_3:9973413-9973432 None:intergenic 45.0%
TTCGGTTCAGTTGTGACAGT+TGG + chr6_3:9973557-9973576 Msa0938220:intron 45.0%
! CGAGCACATGTTTCTATTCC+AGG - chr6_3:9974050-9974069 None:intergenic 45.0%
GCTGTGACTATCGTCTCTCA+AGG + chr6_3:9972592-9972611 Msa0938220:five_prime_UTR 50.0%
GTGCGAAAGGGAATGCAGTA+AGG + chr6_3:9972789-9972808 Msa0938220:CDS 50.0%
AAGGGAATGCAGTAAGGGTG+AGG + chr6_3:9972795-9972814 Msa0938220:CDS 50.0%
GCAGTAAGGGTGAGGACTAT+CGG + chr6_3:9972803-9972822 Msa0938220:CDS 50.0%
ACCTTTGCACTCCACAACAG+TGG - chr6_3:9972954-9972973 None:intergenic 50.0%
GTGTGAGACACTGAAAGCTG+AGG + chr6_3:9973374-9973393 Msa0938220:CDS 50.0%
ATGCAGCTGAAGACCACATC+AGG + chr6_3:9973397-9973416 Msa0938220:CDS 50.0%
CATGCCAAAACTAGCTGGGA+TGG + chr6_3:9973425-9973444 Msa0938220:CDS 50.0%
!! GCATCCATCCCAGCTAGTTT+TGG - chr6_3:9973432-9973451 None:intergenic 50.0%
! TTGTTTCTTCCCCTGCATGC+TGG + chr6_3:9973724-9973743 Msa0938220:intron 50.0%
TGTTTCTTCCCCTGCATGCT+GGG + chr6_3:9973725-9973744 Msa0938220:intron 50.0%
AAAACAGACCCAGCATGCAG+GGG - chr6_3:9973736-9973755 None:intergenic 50.0%
CAAAACAGACCCAGCATGCA+GGG - chr6_3:9973737-9973756 None:intergenic 50.0%
ACAAAACAGACCCAGCATGC+AGG - chr6_3:9973738-9973757 None:intergenic 50.0%
! TGCATGCTGGGTCTGTTTTG+TGG + chr6_3:9973737-9973756 Msa0938220:intron 50.0%
GCTGTGACTATCGTCTCTCA+AGG + chr6_3:9972592-9972611 Msa0938220:five_prime_UTR 50.0%
GTGCGAAAGGGAATGCAGTA+AGG + chr6_3:9972789-9972808 Msa0938220:CDS 50.0%
AAGGGAATGCAGTAAGGGTG+AGG + chr6_3:9972795-9972814 Msa0938220:CDS 50.0%
GCAGTAAGGGTGAGGACTAT+CGG + chr6_3:9972803-9972822 Msa0938220:CDS 50.0%
ACCTTTGCACTCCACAACAG+TGG - chr6_3:9972954-9972973 None:intergenic 50.0%
GTGTGAGACACTGAAAGCTG+AGG + chr6_3:9973374-9973393 Msa0938220:CDS 50.0%
ATGCAGCTGAAGACCACATC+AGG + chr6_3:9973397-9973416 Msa0938220:CDS 50.0%
CATGCCAAAACTAGCTGGGA+TGG + chr6_3:9973425-9973444 Msa0938220:CDS 50.0%
!! GCATCCATCCCAGCTAGTTT+TGG - chr6_3:9973432-9973451 None:intergenic 50.0%
! TTGTTTCTTCCCCTGCATGC+TGG + chr6_3:9973724-9973743 Msa0938220:intron 50.0%
TGTTTCTTCCCCTGCATGCT+GGG + chr6_3:9973725-9973744 Msa0938220:intron 50.0%
AAAACAGACCCAGCATGCAG+GGG - chr6_3:9973736-9973755 None:intergenic 50.0%
CAAAACAGACCCAGCATGCA+GGG - chr6_3:9973737-9973756 None:intergenic 50.0%
ACAAAACAGACCCAGCATGC+AGG - chr6_3:9973738-9973757 None:intergenic 50.0%
! TGCATGCTGGGTCTGTTTTG+TGG + chr6_3:9973737-9973756 Msa0938220:intron 50.0%
GCCACTGTTGTGGAGTGCAA+AGG + chr6_3:9972950-9972969 Msa0938220:CDS 55.0%
CTAGCTGGGATGGATGCTGT+TGG + chr6_3:9973435-9973454 Msa0938220:CDS 55.0%
GCCACTGTTGTGGAGTGCAA+AGG + chr6_3:9972950-9972969 Msa0938220:CDS 55.0%
CTAGCTGGGATGGATGCTGT+TGG + chr6_3:9973435-9973454 Msa0938220:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 9972560 9974087 9972560 ID=Msa0938220;Name=Msa0938220
chr6_3 mRNA 9972560 9974087 9972560 ID=Msa0938220-mRNA-1;Parent=Msa0938220;Name=Msa0938220-mRNA-1;_AED=0.27;_eAED=0.27;_QI=191|1|1|1|1|1|4|174|134
chr6_3 exon 9972560 9972855 9972560 ID=Msa0938220-mRNA-1:exon:3128;Parent=Msa0938220-mRNA-1
chr6_3 exon 9972935 9973014 9972935 ID=Msa0938220-mRNA-1:exon:3129;Parent=Msa0938220-mRNA-1
chr6_3 exon 9973305 9973456 9973305 ID=Msa0938220-mRNA-1:exon:3130;Parent=Msa0938220-mRNA-1
chr6_3 exon 9973846 9974087 9973846 ID=Msa0938220-mRNA-1:exon:3131;Parent=Msa0938220-mRNA-1
chr6_3 five_prime_UTR 9972560 9972750 9972560 ID=Msa0938220-mRNA-1:five_prime_utr;Parent=Msa0938220-mRNA-1
chr6_3 CDS 9972751 9972855 9972751 ID=Msa0938220-mRNA-1:cds;Parent=Msa0938220-mRNA-1
chr6_3 CDS 9972935 9973014 9972935 ID=Msa0938220-mRNA-1:cds;Parent=Msa0938220-mRNA-1
chr6_3 CDS 9973305 9973456 9973305 ID=Msa0938220-mRNA-1:cds;Parent=Msa0938220-mRNA-1
chr6_3 CDS 9973846 9973913 9973846 ID=Msa0938220-mRNA-1:cds;Parent=Msa0938220-mRNA-1
chr6_3 three_prime_UTR 9973914 9974087 9973914 ID=Msa0938220-mRNA-1:three_prime_utr;Parent=Msa0938220-mRNA-1
Gene Sequence

>Msa0938220

ATGGTTTCCTCTGTCTTTTTTATGGTGAAAGAATTGGAGTGCGAAAGGGAATGCAGTAAGGGTGAGGACTATCGGCTAATCAAACTCACAATCACAGATTTCAATACGAAAAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGTCATGATGCTGCTCGATTCCACTGCATTGATCATGCTCATGGTTGGGATAAGGAGATCACAGGTATGGTTGAACAAAAGGATGGGAAGAAAAGAATCACAGTTTCATTTGAGTGTGAGACACTGAAAGCTGAGGATGCAGCTGAAGACCACATCAGGAAGTTCATGCCAAAACTAGCTGGGATGGATGCTGTTGTTAACGTTGGAAAGATGACAATTTCTGGGCTGGATTTTGGAGCAGATGAAGATGATGATACTGAGTAG

Protein sequence

>Msa0938220

MVSSVFFMVKELECERECSKGEDYRLIKLTITDFNTKKEQATVVECKGHDAARFHCIDHAHGWDKEITGMVEQKDGKKRITVSFECETLKAEDAAEDHIRKFMPKLAGMDAVVNVGKMTISGLDFGADEDDDTE*