Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095690 | GAU44138.1 | 37.879 | 264 | 121 | 6 | 4 | 232 | 79 | 334 | 1.03e-36 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095690 | A0A2Z6NHZ9 | 37.879 | 264 | 121 | 6 | 4 | 232 | 79 | 334 | 4.93e-37 | 146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1011600 | Msa1095690 | 0.899198 | 2.513562e-77 | -8.615850e-47 |
| Msa1011610 | Msa1095690 | 0.893063 | 8.904003e-75 | -8.615850e-47 |
| Msa1095680 | Msa1095690 | 0.851970 | 6.270082e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1095690 | MtrunA17_Chr0c01g0489381 | 35.317 | 252 | 101 | 8 | 1 | 213 | 43 | 271 | 8.72e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTGTAGTCACTGTTAA+AGG | 0.202812 | 7_3:+18704253 | None:intergenic |
| TAGAAACAATAACGGCTTAA+TGG | 0.217113 | 7_3:-18703698 | Msa1095690:CDS |
| TTTGGGTACAATCAATATTT+CGG | 0.277077 | 7_3:-18704450 | Msa1095690:CDS |
| ACCATCACCTAAGGTCTTAT+AGG | 0.334110 | 7_3:+18704298 | None:intergenic |
| AAATGATTAAACATTGCATA+AGG | 0.361087 | 7_3:-18704658 | Msa1095690:CDS |
| TCAAAAGACAAGCTTAGAAT+TGG | 0.375842 | 7_3:-18703826 | Msa1095690:intron |
| ATTGGACCACATTCTAAAAC+TGG | 0.383527 | 7_3:-18703808 | Msa1095690:CDS |
| ATGCTTAGAACTTTCATCTT+CGG | 0.388082 | 7_3:+18704415 | None:intergenic |
| TTTCTGTTGTCTTCCACATC+AGG | 0.398075 | 7_3:+18704557 | None:intergenic |
| GACCTCTTCAGACATGAAAC+TGG | 0.399396 | 7_3:-18703422 | Msa1095690:CDS |
| CTCCTGTAGTCACTGTTAAA+GGG | 0.402805 | 7_3:+18704254 | None:intergenic |
| ACAAAGTCTCCTCTTGTAAC+TGG | 0.421162 | 7_3:+18704383 | None:intergenic |
| GACAAAGGAAAGCTTCCATT+TGG | 0.433323 | 7_3:-18704326 | Msa1095690:CDS |
| AAAACACATAAGCACAAATT+CGG | 0.443902 | 7_3:+18703386 | None:intergenic |
| GGTGAATCCTATAAGACCTT+AGG | 0.446850 | 7_3:-18704305 | Msa1095690:CDS |
| GTCAAGGGTGGTGTTGCTAT+TGG | 0.449199 | 7_3:-18703736 | Msa1095690:CDS |
| GGCAAAAGAAACACAGGGTC+AGG | 0.450939 | 7_3:-18704510 | Msa1095690:CDS |
| AATCAATATTTCGGATATTG+AGG | 0.451916 | 7_3:-18704441 | Msa1095690:CDS |
| GTCTTATAGGATTCACCAAA+TGG | 0.453498 | 7_3:+18704311 | None:intergenic |
| AATGATTAAACATTGCATAA+GGG | 0.456866 | 7_3:-18704657 | Msa1095690:CDS |
| CCACCCTTGACACGAGCACT+TGG | 0.492268 | 7_3:+18703748 | None:intergenic |
| CACAAATTCGGATCTCTACA+TGG | 0.492545 | 7_3:+18703398 | None:intergenic |
| TTCTCCAAGTGCTCGTGTCA+AGG | 0.497280 | 7_3:-18703752 | Msa1095690:CDS |
| AAAACAATACACAAGGGAAT+GGG | 0.506699 | 7_3:-18704485 | Msa1095690:CDS |
| GTCCAGCTCCAGATAACAAA+AGG | 0.525163 | 7_3:-18704358 | Msa1095690:CDS |
| TCTCCAAGTGCTCGTGTCAA+GGG | 0.525379 | 7_3:-18703751 | Msa1095690:CDS |
| CTGTGGCTATTCTCCTGATG+TGG | 0.534376 | 7_3:-18704570 | Msa1095690:CDS |
| GCAGAAGCTGAGTACTAAAG+TGG | 0.550132 | 7_3:-18704705 | Msa1095690:intron |
| AACCCTTTAACAGTGACTAC+AGG | 0.560265 | 7_3:-18704256 | Msa1095690:CDS |
| ACAGAGTTCACCATCACCTA+AGG | 0.577175 | 7_3:+18704289 | None:intergenic |
| TCCTATAAGACCTTAGGTGA+TGG | 0.577450 | 7_3:-18704299 | Msa1095690:CDS |
| TAACGGCTTAATGGTTCCAA+AGG | 0.588635 | 7_3:-18703689 | Msa1095690:intron |
| TGTCAACAAAGTCACTCGCT+TGG | 0.589217 | 7_3:-18704531 | Msa1095690:CDS |
| CTCCAAACCTGAAAATAGCA+AGG | 0.599038 | 7_3:-18704603 | Msa1095690:CDS |
| GTCCAGTTTCATGTCTGAAG+AGG | 0.607856 | 7_3:+18703420 | None:intergenic |
| CAGGAGAGGTGCAACTGCAA+AGG | 0.608545 | 7_3:-18704237 | Msa1095690:intron |
| TCGCTTGGCAAAAGAAACAC+AGG | 0.611662 | 7_3:-18704516 | Msa1095690:CDS |
| CCAAGTGCTCGTGTCAAGGG+TGG | 0.616793 | 7_3:-18703748 | Msa1095690:CDS |
| TACTAAAGTGGATAACATAG+AGG | 0.626634 | 7_3:-18704693 | Msa1095690:CDS |
| AGCAAGGTTCATAGCAGCTG+TGG | 0.650912 | 7_3:-18704587 | Msa1095690:CDS |
| AAAAGGCTGAACATTGACAA+AGG | 0.665897 | 7_3:-18704341 | Msa1095690:CDS |
| TTTAACAGTGACTACAGGAG+AGG | 0.679993 | 7_3:-18704251 | Msa1095690:CDS |
| CGCTTGGCAAAAGAAACACA+GGG | 0.711638 | 7_3:-18704515 | Msa1095690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAACAAAAATCCATAC+TGG | - | chr7_3:18703410-18703429 | Msa1095690:CDS | 20.0% |
| !! | AAATGATTAAACATTGCATA+AGG | - | chr7_3:18703534-18703553 | Msa1095690:intron | 20.0% |
| !! | AATGATTAAACATTGCATAA+GGG | - | chr7_3:18703535-18703554 | Msa1095690:intron | 20.0% |
| !! | GAAGTAATAAGCAAAAATTA+TGG | + | chr7_3:18703990-18704009 | None:intergenic | 20.0% |
| !!! | AATTGTTACTATAATCCTTT+TGG | - | chr7_3:18704093-18704112 | Msa1095690:intron | 20.0% |
| !!! | AATGCTTTTAGAAACAATAA+CGG | - | chr7_3:18704486-18704505 | Msa1095690:CDS | 20.0% |
| !! | TTATTAACAAAAATCCATAC+TGG | - | chr7_3:18703410-18703429 | Msa1095690:CDS | 20.0% |
| !! | AAATGATTAAACATTGCATA+AGG | - | chr7_3:18703534-18703553 | Msa1095690:intron | 20.0% |
| !! | AATGATTAAACATTGCATAA+GGG | - | chr7_3:18703535-18703554 | Msa1095690:intron | 20.0% |
| !! | GAAGTAATAAGCAAAAATTA+TGG | + | chr7_3:18703990-18704009 | None:intergenic | 20.0% |
| !!! | AATTGTTACTATAATCCTTT+TGG | - | chr7_3:18704093-18704112 | Msa1095690:intron | 20.0% |
| !!! | AATGCTTTTAGAAACAATAA+CGG | - | chr7_3:18704486-18704505 | Msa1095690:CDS | 20.0% |
| ! | CTTCTGCACATATAAAAAAA+AGG | + | chr7_3:18703474-18703493 | None:intergenic | 25.0% |
| ! | TTTGGGTACAATCAATATTT+CGG | - | chr7_3:18703742-18703761 | Msa1095690:CDS | 25.0% |
| ! | AATCAATATTTCGGATATTG+AGG | - | chr7_3:18703751-18703770 | Msa1095690:CDS | 25.0% |
| !!! | TCTGTTTTTTCATTATTGTC+TGG | + | chr7_3:18704685-18704704 | None:intergenic | 25.0% |
| ! | AAAACACATAAGCACAAATT+CGG | + | chr7_3:18704809-18704828 | None:intergenic | 25.0% |
| ! | CTTCTGCACATATAAAAAAA+AGG | + | chr7_3:18703474-18703493 | None:intergenic | 25.0% |
| ! | TTTGGGTACAATCAATATTT+CGG | - | chr7_3:18703742-18703761 | Msa1095690:CDS | 25.0% |
| ! | AATCAATATTTCGGATATTG+AGG | - | chr7_3:18703751-18703770 | Msa1095690:CDS | 25.0% |
| !!! | TCTGTTTTTTCATTATTGTC+TGG | + | chr7_3:18704685-18704704 | None:intergenic | 25.0% |
| ! | AAAACACATAAGCACAAATT+CGG | + | chr7_3:18704809-18704828 | None:intergenic | 25.0% |
| ! | AAAAAAAGGCATGAACACAA+AGG | + | chr7_3:18703460-18703479 | None:intergenic | 30.0% |
| TACTAAAGTGGATAACATAG+AGG | - | chr7_3:18703499-18703518 | Msa1095690:intron | 30.0% | |
| TCAGGAAAAAACAATACACA+AGG | - | chr7_3:18703700-18703719 | Msa1095690:CDS | 30.0% | |
| CAGGAAAAAACAATACACAA+GGG | - | chr7_3:18703701-18703720 | Msa1095690:CDS | 30.0% | |
| AAAAACAATACACAAGGGAA+TGG | - | chr7_3:18703706-18703725 | Msa1095690:CDS | 30.0% | |
| AAAACAATACACAAGGGAAT+GGG | - | chr7_3:18703707-18703726 | Msa1095690:CDS | 30.0% | |
| AATGGGAATGCTGAAAAATT+TGG | - | chr7_3:18703724-18703743 | Msa1095690:CDS | 30.0% | |
| ATGGGAATGCTGAAAAATTT+GGG | - | chr7_3:18703725-18703744 | Msa1095690:CDS | 30.0% | |
| ATGCTTAGAACTTTCATCTT+CGG | + | chr7_3:18703780-18703799 | None:intergenic | 30.0% | |
| AAAAAAAGACCAGTTACAAG+AGG | - | chr7_3:18703800-18703819 | Msa1095690:CDS | 30.0% | |
| CGTAAAAAAGACTTACCAAA+AGG | + | chr7_3:18704111-18704130 | None:intergenic | 30.0% | |
| ! | CGAGAATAATATGCATTTTC+AGG | - | chr7_3:18704129-18704148 | Msa1095690:intron | 30.0% |
| TGAACTTAGTATCCTGTATT+TGG | - | chr7_3:18704170-18704189 | Msa1095690:intron | 30.0% | |
| TCAAAAGACAAGCTTAGAAT+TGG | - | chr7_3:18704366-18704385 | Msa1095690:CDS | 30.0% | |
| TAGAAACAATAACGGCTTAA+TGG | - | chr7_3:18704494-18704513 | Msa1095690:CDS | 30.0% | |
| TGGTGTAAATATGTTACCTT+TGG | + | chr7_3:18704522-18704541 | None:intergenic | 30.0% | |
| ! | ACACACATTTGTGCATATTT+TGG | + | chr7_3:18704641-18704660 | None:intergenic | 30.0% |
| ! | TTCATTATTGTCTGGTTTAG+TGG | + | chr7_3:18704677-18704696 | None:intergenic | 30.0% |
| ! | AAAAAAAGGCATGAACACAA+AGG | + | chr7_3:18703460-18703479 | None:intergenic | 30.0% |
| TACTAAAGTGGATAACATAG+AGG | - | chr7_3:18703499-18703518 | Msa1095690:intron | 30.0% | |
| TCAGGAAAAAACAATACACA+AGG | - | chr7_3:18703700-18703719 | Msa1095690:CDS | 30.0% | |
| CAGGAAAAAACAATACACAA+GGG | - | chr7_3:18703701-18703720 | Msa1095690:CDS | 30.0% | |
| AAAAACAATACACAAGGGAA+TGG | - | chr7_3:18703706-18703725 | Msa1095690:CDS | 30.0% | |
| AAAACAATACACAAGGGAAT+GGG | - | chr7_3:18703707-18703726 | Msa1095690:CDS | 30.0% | |
| AATGGGAATGCTGAAAAATT+TGG | - | chr7_3:18703724-18703743 | Msa1095690:CDS | 30.0% | |
| ATGGGAATGCTGAAAAATTT+GGG | - | chr7_3:18703725-18703744 | Msa1095690:CDS | 30.0% | |
| ATGCTTAGAACTTTCATCTT+CGG | + | chr7_3:18703780-18703799 | None:intergenic | 30.0% | |
| AAAAAAAGACCAGTTACAAG+AGG | - | chr7_3:18703800-18703819 | Msa1095690:CDS | 30.0% | |
| CGTAAAAAAGACTTACCAAA+AGG | + | chr7_3:18704111-18704130 | None:intergenic | 30.0% | |
| ! | CGAGAATAATATGCATTTTC+AGG | - | chr7_3:18704129-18704148 | Msa1095690:intron | 30.0% |
| TGAACTTAGTATCCTGTATT+TGG | - | chr7_3:18704170-18704189 | Msa1095690:intron | 30.0% | |
| TCAAAAGACAAGCTTAGAAT+TGG | - | chr7_3:18704366-18704385 | Msa1095690:CDS | 30.0% | |
| TAGAAACAATAACGGCTTAA+TGG | - | chr7_3:18704494-18704513 | Msa1095690:CDS | 30.0% | |
| TGGTGTAAATATGTTACCTT+TGG | + | chr7_3:18704522-18704541 | None:intergenic | 30.0% | |
| ! | ACACACATTTGTGCATATTT+TGG | + | chr7_3:18704641-18704660 | None:intergenic | 30.0% |
| ! | TTCATTATTGTCTGGTTTAG+TGG | + | chr7_3:18704677-18704696 | None:intergenic | 30.0% |
| ACTACTTACAAGAACCAGTA+TGG | + | chr7_3:18703427-18703446 | None:intergenic | 35.0% | |
| !!! | CTATTTTCAGGTTTGGAGTT+AGG | + | chr7_3:18703587-18703606 | None:intergenic | 35.0% |
| !!! | AACCTTGCTATTTTCAGGTT+TGG | + | chr7_3:18703594-18703613 | None:intergenic | 35.0% |
| !!! | CTATGAACCTTGCTATTTTC+AGG | + | chr7_3:18703599-18703618 | None:intergenic | 35.0% |
| !! | ATGTTCAGCCTTTTGTTATC+TGG | + | chr7_3:18703845-18703864 | None:intergenic | 35.0% |
| AAAAGGCTGAACATTGACAA+AGG | - | chr7_3:18703851-18703870 | Msa1095690:intron | 35.0% | |
| GTCTTATAGGATTCACCAAA+TGG | + | chr7_3:18703884-18703903 | None:intergenic | 35.0% | |
| ! | TAGTATCCTGTATTTGGAGT+TGG | - | chr7_3:18704176-18704195 | Msa1095690:intron | 35.0% |
| AATCTACCAACTCCAAATAC+AGG | + | chr7_3:18704185-18704204 | None:intergenic | 35.0% | |
| GAAGGACACAATAATAACGT+CGG | - | chr7_3:18704296-18704315 | Msa1095690:CDS | 35.0% | |
| ! | TTGTCTTTTGATCATTCTCC+AGG | + | chr7_3:18704357-18704376 | None:intergenic | 35.0% |
| !! | ATTGGACCACATTCTAAAAC+TGG | - | chr7_3:18704384-18704403 | Msa1095690:CDS | 35.0% |
| !!! | CTTTTGACTTTTGTTGCTCT+TGG | + | chr7_3:18704417-18704436 | None:intergenic | 35.0% |
| ACACTAAACACACGCTTAAA+TGG | + | chr7_3:18704542-18704561 | None:intergenic | 35.0% | |
| ATTTAAGCGTGTGTTTAGTG+TGG | - | chr7_3:18704541-18704560 | Msa1095690:CDS | 35.0% | |
| ! | TAGTGTGGAGTTTGAAATTG+CGG | - | chr7_3:18704556-18704575 | Msa1095690:CDS | 35.0% |
| CCACGACTAAAAAGTTCATT+GGG | + | chr7_3:18704600-18704619 | None:intergenic | 35.0% | |
| TCCACGACTAAAAAGTTCAT+TGG | + | chr7_3:18704601-18704620 | None:intergenic | 35.0% | |
| ! | TTATTGTCTGGTTTAGTGGT+GGG | + | chr7_3:18704673-18704692 | None:intergenic | 35.0% |
| ! | ATTATTGTCTGGTTTAGTGG+TGG | + | chr7_3:18704674-18704693 | None:intergenic | 35.0% |
| ! | GTCTTGTTAAACAGCATTTC+AGG | - | chr7_3:18704736-18704755 | Msa1095690:intron | 35.0% |
| ACTACTTACAAGAACCAGTA+TGG | + | chr7_3:18703427-18703446 | None:intergenic | 35.0% | |
| !!! | CTATTTTCAGGTTTGGAGTT+AGG | + | chr7_3:18703587-18703606 | None:intergenic | 35.0% |
| !!! | AACCTTGCTATTTTCAGGTT+TGG | + | chr7_3:18703594-18703613 | None:intergenic | 35.0% |
| !!! | CTATGAACCTTGCTATTTTC+AGG | + | chr7_3:18703599-18703618 | None:intergenic | 35.0% |
| !! | ATGTTCAGCCTTTTGTTATC+TGG | + | chr7_3:18703845-18703864 | None:intergenic | 35.0% |
| AAAAGGCTGAACATTGACAA+AGG | - | chr7_3:18703851-18703870 | Msa1095690:intron | 35.0% | |
| GTCTTATAGGATTCACCAAA+TGG | + | chr7_3:18703884-18703903 | None:intergenic | 35.0% | |
| ! | TAGTATCCTGTATTTGGAGT+TGG | - | chr7_3:18704176-18704195 | Msa1095690:intron | 35.0% |
| AATCTACCAACTCCAAATAC+AGG | + | chr7_3:18704185-18704204 | None:intergenic | 35.0% | |
| GAAGGACACAATAATAACGT+CGG | - | chr7_3:18704296-18704315 | Msa1095690:CDS | 35.0% | |
| ! | TTGTCTTTTGATCATTCTCC+AGG | + | chr7_3:18704357-18704376 | None:intergenic | 35.0% |
| !! | ATTGGACCACATTCTAAAAC+TGG | - | chr7_3:18704384-18704403 | Msa1095690:CDS | 35.0% |
| !!! | CTTTTGACTTTTGTTGCTCT+TGG | + | chr7_3:18704417-18704436 | None:intergenic | 35.0% |
| ACACTAAACACACGCTTAAA+TGG | + | chr7_3:18704542-18704561 | None:intergenic | 35.0% | |
| ATTTAAGCGTGTGTTTAGTG+TGG | - | chr7_3:18704541-18704560 | Msa1095690:CDS | 35.0% | |
| ! | TAGTGTGGAGTTTGAAATTG+CGG | - | chr7_3:18704556-18704575 | Msa1095690:CDS | 35.0% |
| CCACGACTAAAAAGTTCATT+GGG | + | chr7_3:18704600-18704619 | None:intergenic | 35.0% | |
| TCCACGACTAAAAAGTTCAT+TGG | + | chr7_3:18704601-18704620 | None:intergenic | 35.0% | |
| ! | TTATTGTCTGGTTTAGTGGT+GGG | + | chr7_3:18704673-18704692 | None:intergenic | 35.0% |
| ! | ATTATTGTCTGGTTTAGTGG+TGG | + | chr7_3:18704674-18704693 | None:intergenic | 35.0% |
| ! | GTCTTGTTAAACAGCATTTC+AGG | - | chr7_3:18704736-18704755 | Msa1095690:intron | 35.0% |
| CTCCAAACCTGAAAATAGCA+AGG | - | chr7_3:18703589-18703608 | Msa1095690:intron | 40.0% | |
| TTTCTGTTGTCTTCCACATC+AGG | + | chr7_3:18703638-18703657 | None:intergenic | 40.0% | |
| ACAAAGTCTCCTCTTGTAAC+TGG | + | chr7_3:18703812-18703831 | None:intergenic | 40.0% | |
| GACAAAGGAAAGCTTCCATT+TGG | - | chr7_3:18703866-18703885 | Msa1095690:intron | 40.0% | |
| GGTGAATCCTATAAGACCTT+AGG | - | chr7_3:18703887-18703906 | Msa1095690:intron | 40.0% | |
| TCCTATAAGACCTTAGGTGA+TGG | - | chr7_3:18703893-18703912 | Msa1095690:intron | 40.0% | |
| ! | ACCATCACCTAAGGTCTTAT+AGG | + | chr7_3:18703897-18703916 | None:intergenic | 40.0% |
| AACCCTTTAACAGTGACTAC+AGG | - | chr7_3:18703936-18703955 | Msa1095690:intron | 40.0% | |
| CTCCTGTAGTCACTGTTAAA+GGG | + | chr7_3:18703941-18703960 | None:intergenic | 40.0% | |
| TCTCCTGTAGTCACTGTTAA+AGG | + | chr7_3:18703942-18703961 | None:intergenic | 40.0% | |
| TTTAACAGTGACTACAGGAG+AGG | - | chr7_3:18703941-18703960 | Msa1095690:intron | 40.0% | |
| !! | CGTCTCTGACTTTTGATTGA+AGG | - | chr7_3:18704278-18704297 | Msa1095690:CDS | 40.0% |
| TTTGATCATTCTCCAGGTGA+TGG | + | chr7_3:18704351-18704370 | None:intergenic | 40.0% | |
| !!! | GATGGTCCAGTTTTAGAATG+TGG | + | chr7_3:18704393-18704412 | None:intergenic | 40.0% |
| ! | ACTTTTGTTGCTCTTGGAGA+TGG | + | chr7_3:18704411-18704430 | None:intergenic | 40.0% |
| TAACGGCTTAATGGTTCCAA+AGG | - | chr7_3:18704503-18704522 | Msa1095690:CDS | 40.0% | |
| !! | CCCAATGAACTTTTTAGTCG+TGG | - | chr7_3:18704597-18704616 | Msa1095690:CDS | 40.0% |
| CACAAATTCGGATCTCTACA+TGG | + | chr7_3:18704797-18704816 | None:intergenic | 40.0% | |
| CTCCAAACCTGAAAATAGCA+AGG | - | chr7_3:18703589-18703608 | Msa1095690:intron | 40.0% | |
| TTTCTGTTGTCTTCCACATC+AGG | + | chr7_3:18703638-18703657 | None:intergenic | 40.0% | |
| ACAAAGTCTCCTCTTGTAAC+TGG | + | chr7_3:18703812-18703831 | None:intergenic | 40.0% | |
| GACAAAGGAAAGCTTCCATT+TGG | - | chr7_3:18703866-18703885 | Msa1095690:intron | 40.0% | |
| GGTGAATCCTATAAGACCTT+AGG | - | chr7_3:18703887-18703906 | Msa1095690:intron | 40.0% | |
| TCCTATAAGACCTTAGGTGA+TGG | - | chr7_3:18703893-18703912 | Msa1095690:intron | 40.0% | |
| ! | ACCATCACCTAAGGTCTTAT+AGG | + | chr7_3:18703897-18703916 | None:intergenic | 40.0% |
| AACCCTTTAACAGTGACTAC+AGG | - | chr7_3:18703936-18703955 | Msa1095690:intron | 40.0% | |
| CTCCTGTAGTCACTGTTAAA+GGG | + | chr7_3:18703941-18703960 | None:intergenic | 40.0% | |
| TCTCCTGTAGTCACTGTTAA+AGG | + | chr7_3:18703942-18703961 | None:intergenic | 40.0% | |
| TTTAACAGTGACTACAGGAG+AGG | - | chr7_3:18703941-18703960 | Msa1095690:intron | 40.0% | |
| !! | CGTCTCTGACTTTTGATTGA+AGG | - | chr7_3:18704278-18704297 | Msa1095690:CDS | 40.0% |
| TTTGATCATTCTCCAGGTGA+TGG | + | chr7_3:18704351-18704370 | None:intergenic | 40.0% | |
| !!! | GATGGTCCAGTTTTAGAATG+TGG | + | chr7_3:18704393-18704412 | None:intergenic | 40.0% |
| ! | ACTTTTGTTGCTCTTGGAGA+TGG | + | chr7_3:18704411-18704430 | None:intergenic | 40.0% |
| TAACGGCTTAATGGTTCCAA+AGG | - | chr7_3:18704503-18704522 | Msa1095690:CDS | 40.0% | |
| !! | CCCAATGAACTTTTTAGTCG+TGG | - | chr7_3:18704597-18704616 | Msa1095690:CDS | 40.0% |
| CACAAATTCGGATCTCTACA+TGG | + | chr7_3:18704797-18704816 | None:intergenic | 40.0% | |
| GCAGAAGCTGAGTACTAAAG+TGG | - | chr7_3:18703487-18703506 | Msa1095690:intron | 45.0% | |
| TGTCAACAAAGTCACTCGCT+TGG | - | chr7_3:18703661-18703680 | Msa1095690:intron | 45.0% | |
| TCGCTTGGCAAAAGAAACAC+AGG | - | chr7_3:18703676-18703695 | Msa1095690:intron | 45.0% | |
| CGCTTGGCAAAAGAAACACA+GGG | - | chr7_3:18703677-18703696 | Msa1095690:intron | 45.0% | |
| GTCCAGCTCCAGATAACAAA+AGG | - | chr7_3:18703834-18703853 | Msa1095690:intron | 45.0% | |
| !! | AGCCTTTTGTTATCTGGAGC+TGG | + | chr7_3:18703839-18703858 | None:intergenic | 45.0% |
| ACAGAGTTCACCATCACCTA+AGG | + | chr7_3:18703906-18703925 | None:intergenic | 45.0% | |
| ! | GAGTGCTACTGAAACACAGA+AGG | + | chr7_3:18704047-18704066 | None:intergenic | 45.0% |
| ! | TTCTCCAGGTGATGGTGTAA+AGG | + | chr7_3:18704343-18704362 | None:intergenic | 45.0% |
| CATGTCTGAAGAGGTCTTGA+AGG | + | chr7_3:18704766-18704785 | None:intergenic | 45.0% | |
| GACCTCTTCAGACATGAAAC+TGG | - | chr7_3:18704770-18704789 | Msa1095690:intron | 45.0% | |
| GTCCAGTTTCATGTCTGAAG+AGG | + | chr7_3:18704775-18704794 | None:intergenic | 45.0% | |
| GCAGAAGCTGAGTACTAAAG+TGG | - | chr7_3:18703487-18703506 | Msa1095690:intron | 45.0% | |
| TGTCAACAAAGTCACTCGCT+TGG | - | chr7_3:18703661-18703680 | Msa1095690:intron | 45.0% | |
| TCGCTTGGCAAAAGAAACAC+AGG | - | chr7_3:18703676-18703695 | Msa1095690:intron | 45.0% | |
| CGCTTGGCAAAAGAAACACA+GGG | - | chr7_3:18703677-18703696 | Msa1095690:intron | 45.0% | |
| GTCCAGCTCCAGATAACAAA+AGG | - | chr7_3:18703834-18703853 | Msa1095690:intron | 45.0% | |
| !! | AGCCTTTTGTTATCTGGAGC+TGG | + | chr7_3:18703839-18703858 | None:intergenic | 45.0% |
| ACAGAGTTCACCATCACCTA+AGG | + | chr7_3:18703906-18703925 | None:intergenic | 45.0% | |
| ! | GAGTGCTACTGAAACACAGA+AGG | + | chr7_3:18704047-18704066 | None:intergenic | 45.0% |
| ! | TTCTCCAGGTGATGGTGTAA+AGG | + | chr7_3:18704343-18704362 | None:intergenic | 45.0% |
| CATGTCTGAAGAGGTCTTGA+AGG | + | chr7_3:18704766-18704785 | None:intergenic | 45.0% | |
| GACCTCTTCAGACATGAAAC+TGG | - | chr7_3:18704770-18704789 | Msa1095690:intron | 45.0% | |
| GTCCAGTTTCATGTCTGAAG+AGG | + | chr7_3:18704775-18704794 | None:intergenic | 45.0% | |
| AGCAAGGTTCATAGCAGCTG+TGG | - | chr7_3:18703605-18703624 | Msa1095690:intron | 50.0% | |
| CTGTGGCTATTCTCCTGATG+TGG | - | chr7_3:18703622-18703641 | Msa1095690:intron | 50.0% | |
| GGCAAAAGAAACACAGGGTC+AGG | - | chr7_3:18703682-18703701 | Msa1095690:intron | 50.0% | |
| CGTCGGCAACAATGTGTAGA+AGG | - | chr7_3:18704313-18704332 | Msa1095690:CDS | 50.0% | |
| CTGACCTTTACACCATCACC+TGG | - | chr7_3:18704336-18704355 | Msa1095690:CDS | 50.0% | |
| TTCTCCAAGTGCTCGTGTCA+AGG | - | chr7_3:18704440-18704459 | Msa1095690:CDS | 50.0% | |
| TCTCCAAGTGCTCGTGTCAA+GGG | - | chr7_3:18704441-18704460 | Msa1095690:CDS | 50.0% | |
| !! | GTCAAGGGTGGTGTTGCTAT+TGG | - | chr7_3:18704456-18704475 | Msa1095690:CDS | 50.0% |
| ! | TGTCTGGTTTAGTGGTGGGA+AGG | + | chr7_3:18704669-18704688 | None:intergenic | 50.0% |
| AGCAAGGTTCATAGCAGCTG+TGG | - | chr7_3:18703605-18703624 | Msa1095690:intron | 50.0% | |
| CTGTGGCTATTCTCCTGATG+TGG | - | chr7_3:18703622-18703641 | Msa1095690:intron | 50.0% | |
| GGCAAAAGAAACACAGGGTC+AGG | - | chr7_3:18703682-18703701 | Msa1095690:intron | 50.0% | |
| CGTCGGCAACAATGTGTAGA+AGG | - | chr7_3:18704313-18704332 | Msa1095690:CDS | 50.0% | |
| CTGACCTTTACACCATCACC+TGG | - | chr7_3:18704336-18704355 | Msa1095690:CDS | 50.0% | |
| TTCTCCAAGTGCTCGTGTCA+AGG | - | chr7_3:18704440-18704459 | Msa1095690:CDS | 50.0% | |
| TCTCCAAGTGCTCGTGTCAA+GGG | - | chr7_3:18704441-18704460 | Msa1095690:CDS | 50.0% | |
| !! | GTCAAGGGTGGTGTTGCTAT+TGG | - | chr7_3:18704456-18704475 | Msa1095690:CDS | 50.0% |
| ! | TGTCTGGTTTAGTGGTGGGA+AGG | + | chr7_3:18704669-18704688 | None:intergenic | 50.0% |
| ! | CAGGAGAGGTGCAACTGCAA+AGG | - | chr7_3:18703955-18703974 | Msa1095690:intron | 55.0% |
| ! | CAGGAGAGGTGCAACTGCAA+AGG | - | chr7_3:18703955-18703974 | Msa1095690:intron | 55.0% |
| CCACCCTTGACACGAGCACT+TGG | + | chr7_3:18704447-18704466 | None:intergenic | 60.0% | |
| CCAAGTGCTCGTGTCAAGGG+TGG | - | chr7_3:18704444-18704463 | Msa1095690:CDS | 60.0% | |
| CCACCCTTGACACGAGCACT+TGG | + | chr7_3:18704447-18704466 | None:intergenic | 60.0% | |
| CCAAGTGCTCGTGTCAAGGG+TGG | - | chr7_3:18704444-18704463 | Msa1095690:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 18703384 | 18704830 | 18703384 | ID=Msa1095690;Name=Msa1095690 |
| chr7_3 | mRNA | 18703384 | 18704830 | 18703384 | ID=Msa1095690-mRNA-1;Parent=Msa1095690;Name=Msa1095690-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.75|0.33|0.5|4|0|232 |
| chr7_3 | exon | 18704825 | 18704830 | 18704825 | ID=Msa1095690-mRNA-1:exon:4086;Parent=Msa1095690-mRNA-1 |
| chr7_3 | exon | 18704238 | 18704723 | 18704238 | ID=Msa1095690-mRNA-1:exon:4085;Parent=Msa1095690-mRNA-1 |
| chr7_3 | exon | 18703690 | 18703836 | 18703690 | ID=Msa1095690-mRNA-1:exon:4084;Parent=Msa1095690-mRNA-1 |
| chr7_3 | exon | 18703384 | 18703443 | 18703384 | ID=Msa1095690-mRNA-1:exon:4083;Parent=Msa1095690-mRNA-1 |
| chr7_3 | CDS | 18704825 | 18704830 | 18704825 | ID=Msa1095690-mRNA-1:cds;Parent=Msa1095690-mRNA-1 |
| chr7_3 | CDS | 18704238 | 18704723 | 18704238 | ID=Msa1095690-mRNA-1:cds;Parent=Msa1095690-mRNA-1 |
| chr7_3 | CDS | 18703690 | 18703836 | 18703690 | ID=Msa1095690-mRNA-1:cds;Parent=Msa1095690-mRNA-1 |
| chr7_3 | CDS | 18703384 | 18703443 | 18703384 | ID=Msa1095690-mRNA-1:cds;Parent=Msa1095690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
