Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096110 | XP_003621788.1 | 99.250 | 400 | 3 | 0 | 1 | 400 | 1 | 400 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096110 | sp|Q5NA18|MTP5_ORYSJ | 81.067 | 375 | 68 | 2 | 27 | 399 | 40 | 413 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096110 | G7KVN9 | 99.250 | 400 | 3 | 0 | 1 | 400 | 1 | 400 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0148590 | Msa1096110 | 0.819636 | 1.046834e-52 | -8.615850e-47 |
| Msa0156780 | Msa1096110 | 0.807056 | 6.091431e-50 | -8.615850e-47 |
| Msa1096110 | Msa1332180 | 0.806411 | 8.333477e-50 | -8.615850e-47 |
| Msa1096110 | Msa1433650 | 0.803814 | 2.913004e-49 | -8.615850e-47 |
| Msa0978440 | Msa1096110 | 0.836384 | 9.657184e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096110 | MtrunA17_Chr7g0222641 | 99.250 | 400 | 3 | 0 | 1 | 400 | 1 | 400 | 0.0 | 827 |
| Msa1096110 | MtrunA17_Chr8g0357061 | 60.367 | 381 | 143 | 4 | 21 | 395 | 12 | 390 | 1.16e-160 | 457 |
| Msa1096110 | MtrunA17_Chr2g0310301 | 61.765 | 374 | 137 | 4 | 25 | 395 | 19 | 389 | 5.79e-159 | 452 |
| Msa1096110 | MtrunA17_Chr3g0119281 | 57.181 | 376 | 143 | 5 | 29 | 397 | 33 | 397 | 1.59e-144 | 416 |
| Msa1096110 | MtrunA17_Chr3g0108381 | 57.317 | 328 | 135 | 2 | 69 | 396 | 72 | 394 | 9.44e-130 | 379 |
| Msa1096110 | MtrunA17_Chr5g0432881 | 56.098 | 328 | 139 | 3 | 69 | 396 | 65 | 387 | 1.06e-125 | 368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096110 | AT2G39450.1 | 81.313 | 396 | 72 | 1 | 5 | 400 | 1 | 394 | 0.0 | 608 |
| Msa1096110 | AT1G16310.1 | 59.898 | 394 | 138 | 5 | 13 | 395 | 41 | 425 | 1.26e-163 | 466 |
| Msa1096110 | AT1G79520.1 | 62.105 | 380 | 130 | 4 | 24 | 395 | 25 | 398 | 7.41e-163 | 463 |
| Msa1096110 | AT1G79520.2 | 61.240 | 387 | 134 | 5 | 24 | 395 | 25 | 410 | 2.16e-162 | 462 |
| Msa1096110 | AT1G79520.3 | 66.176 | 340 | 113 | 2 | 57 | 395 | 7 | 345 | 2.61e-162 | 460 |
| Msa1096110 | AT1G79520.4 | 66.176 | 340 | 113 | 2 | 57 | 395 | 7 | 345 | 2.61e-162 | 460 |
| Msa1096110 | AT1G16310.2 | 66.773 | 313 | 102 | 2 | 84 | 395 | 1 | 312 | 1.47e-150 | 429 |
| Msa1096110 | AT3G58060.2 | 53.977 | 352 | 157 | 3 | 50 | 396 | 51 | 402 | 2.21e-126 | 371 |
| Msa1096110 | AT3G58060.1 | 53.977 | 352 | 157 | 3 | 50 | 396 | 51 | 402 | 2.21e-126 | 371 |
Find 113 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTGGACCTCCTTTC+TGG | 0.043075 | 7_3:+19900315 | Msa1096110:CDS |
| CCTTGGGCTGCAAATAATTT+TGG | 0.129879 | 7_3:+19900568 | Msa1096110:CDS |
| TCCTTTCTGGATTTATCTTA+TGG | 0.146709 | 7_3:+19900328 | Msa1096110:CDS |
| CTTCTTTCAGTTTCTGATAA+TGG | 0.222068 | 7_3:+19897626 | Msa1096110:CDS |
| CATCCAATCATCAAAATAAT+TGG | 0.258777 | 7_3:-19900927 | None:intergenic |
| TGGTCTAATTGCTGCACTTT+TGG | 0.273816 | 7_3:+19900904 | Msa1096110:CDS |
| CATGATTGCTATGGTGTTCT+TGG | 0.277365 | 7_3:+19897734 | Msa1096110:CDS |
| ACTCGGCAATATTATCTTCT+TGG | 0.283726 | 7_3:-19899685 | None:intergenic |
| GCCTCTGTCATGGCGACCCT+TGG | 0.284841 | 7_3:+19900551 | Msa1096110:CDS |
| GCAGAGCGTGGTTTCCTTCC+CGG | 0.286014 | 7_3:+19899761 | Msa1096110:CDS |
| AATAGAAACCTTTGACATTC+CGG | 0.314411 | 7_3:-19899780 | None:intergenic |
| AAATTGTGTGCAGGGAATTC+TGG | 0.316840 | 7_3:+19900523 | Msa1096110:intron |
| GCATGCACAAGCACATTCTT+AGG | 0.345663 | 7_3:+19902855 | Msa1096110:CDS |
| TTGCAAGAGGCTCATGATAT+CGG | 0.352519 | 7_3:+19902745 | Msa1096110:CDS |
| AATCCGTATCAGTACCCTAT+TGG | 0.365036 | 7_3:+19900378 | Msa1096110:CDS |
| CTCAACAATTTCTCAGTACT+TGG | 0.369775 | 7_3:-19902954 | None:intergenic |
| GCTTGAAGGCTTTACTGAAA+TGG | 0.373644 | 7_3:+19899730 | Msa1096110:CDS |
| TGAATACCAGGAGAGGGTTT+AGG | 0.374643 | 7_3:-19897713 | None:intergenic |
| TATGAGAAATAGAGTGAAAG+TGG | 0.384074 | 7_3:-19903026 | None:intergenic |
| ATAGAAACCTTTGACATTCC+GGG | 0.389148 | 7_3:-19899779 | None:intergenic |
| TCCGAAAATATATATACTTT+CGG | 0.402293 | 7_3:+19903128 | Msa1096110:three_prime_UTR |
| TGCAAGAGGCTCATGATATC+GGG | 0.405352 | 7_3:+19902746 | Msa1096110:CDS |
| AAGAGAAAATGCAGTTAGGT+TGG | 0.406621 | 7_3:-19897500 | None:intergenic |
| AGTGAAAGCTCTTCTTCGTT+AGG | 0.410273 | 7_3:-19897605 | None:intergenic |
| TGCATCCGCTTCTTTCCAAT+AGG | 0.421976 | 7_3:-19900393 | None:intergenic |
| TAAGACACATTGACACTGTT+CGG | 0.424020 | 7_3:+19902659 | Msa1096110:CDS |
| ATAGGGTACTGATACGGATT+TGG | 0.428517 | 7_3:-19900375 | None:intergenic |
| GCATCCGCTTCTTTCCAATA+GGG | 0.430128 | 7_3:-19900392 | None:intergenic |
| CAGCAGGTTGAAGTGCTTGA+AGG | 0.440105 | 7_3:+19899716 | Msa1096110:CDS |
| AAACATGATACTGAGACATT+AGG | 0.441736 | 7_3:-19903080 | None:intergenic |
| GATGTGATCACTAATGTGAT+TGG | 0.442921 | 7_3:+19900884 | Msa1096110:CDS |
| AAAGAAGCGGATGCAACCTT+TGG | 0.447623 | 7_3:+19900401 | Msa1096110:CDS |
| CTGATAATGGTGACCGGTCA+TGG | 0.447887 | 7_3:+19897639 | Msa1096110:CDS |
| ATCCACTTTAGACTCTCTTC+TGG | 0.448253 | 7_3:+19900302 | Msa1096110:CDS |
| CTTCAGCTTGACTAGGGAAC+AGG | 0.454270 | 7_3:+19900745 | Msa1096110:CDS |
| TATTATGCTTTCAGTGACTT+TGG | 0.454551 | 7_3:+19900784 | Msa1096110:CDS |
| GAACAGGAACGCTGGGTTGT+GGG | 0.455187 | 7_3:+19900761 | Msa1096110:CDS |
| GGAACAGGAACGCTGGGTTG+TGG | 0.455643 | 7_3:+19900760 | Msa1096110:CDS |
| GAAAATGTGAATTCACTTGT+TGG | 0.461809 | 7_3:+19902571 | Msa1096110:CDS |
| GATGGCAAACGTCTCGCTCC+TGG | 0.461933 | 7_3:-19900196 | None:intergenic |
| ACAAAAGCACGCTCGATCTC+AGG | 0.463499 | 7_3:-19902799 | None:intergenic |
| GAAGAAGAGAAAATGCAGTT+AGG | 0.465647 | 7_3:-19897504 | None:intergenic |
| CCTCTGTCATGGCGACCCTT+GGG | 0.468766 | 7_3:+19900552 | Msa1096110:CDS |
| AAGACACATTGACACTGTTC+GGG | 0.476544 | 7_3:+19902660 | Msa1096110:CDS |
| AGAAACTTACATACCTCTGC+TGG | 0.477384 | 7_3:+19902620 | Msa1096110:CDS |
| GAATGTGCTTGTGCATGCTC+AGG | 0.480448 | 7_3:-19902850 | None:intergenic |
| AATAAACTTCCTTGCATGAC+AGG | 0.492423 | 7_3:-19902999 | None:intergenic |
| TCTGACTGATGCATAAACTT+TGG | 0.494540 | 7_3:-19900256 | None:intergenic |
| GTCTAAAGTGGATGCAATGA+TGG | 0.499685 | 7_3:-19900292 | None:intergenic |
| AGGAGCGAGATAAGTTAGCC+AGG | 0.501817 | 7_3:+19900178 | Msa1096110:CDS |
| CCTGGTATTCATGATTGCTA+TGG | 0.501871 | 7_3:+19897725 | Msa1096110:CDS |
| GACTAGGGAACAGGAACGCT+GGG | 0.505271 | 7_3:+19900754 | Msa1096110:CDS |
| TCTGGTGTTTGCCTCTGTCA+TGG | 0.505859 | 7_3:+19900541 | Msa1096110:CDS |
| AAAAGTGGGAAATGTGTGTA+AGG | 0.511614 | 7_3:-19897416 | None:intergenic |
| GTAAGTTTCTGAAGATACTC+TGG | 0.516377 | 7_3:-19902607 | None:intergenic |
| CTTACAATGATAGCACCAAC+AGG | 0.517600 | 7_3:-19900953 | None:intergenic |
| ATAATACCTTCAGCTTGACT+AGG | 0.518093 | 7_3:+19900738 | Msa1096110:CDS |
| TCTTGCAAAGGCATGTCTGC+TGG | 0.522402 | 7_3:-19902730 | None:intergenic |
| ACTGTTCGGGCATATACATT+CGG | 0.522461 | 7_3:+19902673 | Msa1096110:CDS |
| CGAAGTTCAACCGCCATGAC+CGG | 0.524564 | 7_3:-19897652 | None:intergenic |
| CGGCTCTCACTACTTTGTTG+AGG | 0.525412 | 7_3:+19902693 | Msa1096110:CDS |
| CCAAAATTATTTGCAGCCCA+AGG | 0.525725 | 7_3:-19900568 | None:intergenic |
| AAGGAAACCACGCTCTGCTA+AGG | 0.531828 | 7_3:-19899756 | None:intergenic |
| TTTCCAATAGGGTACTGATA+CGG | 0.535905 | 7_3:-19900381 | None:intergenic |
| CAGTTTCTGATAATGGTGAC+CGG | 0.537897 | 7_3:+19897633 | Msa1096110:CDS |
| TTTCCTTCCCGGAATGTCAA+AGG | 0.540211 | 7_3:+19899772 | Msa1096110:CDS |
| TGGGAAATGTGTGTAAGGTA+AGG | 0.540642 | 7_3:-19897411 | None:intergenic |
| CCATAGCAATCATGAATACC+AGG | 0.540737 | 7_3:-19897725 | None:intergenic |
| AGCTATGTTCGATATTCTGA+TGG | 0.545423 | 7_3:-19900214 | None:intergenic |
| TACAGTGTATATTAGTGTGC+GGG | 0.552886 | 7_3:-19900597 | None:intergenic |
| AGCAGACATGCCTTTGCAAG+AGG | 0.566228 | 7_3:+19902732 | Msa1096110:CDS |
| GATTGTGAAGGCCTATGCTC+AGG | 0.566596 | 7_3:+19900850 | Msa1096110:CDS |
| CAAAATTATTTGCAGCCCAA+GGG | 0.567370 | 7_3:-19900567 | None:intergenic |
| CCTTGTGGTGGTTCCAGCAG+AGG | 0.569864 | 7_3:-19902633 | None:intergenic |
| ATACGGATTTGGTGTTTGCA+TGG | 0.571306 | 7_3:-19900364 | None:intergenic |
| AAGTGGATGCAATGATGGCA+AGG | 0.572995 | 7_3:-19900287 | None:intergenic |
| GACCGGGAAAATGGTGGAGA+CGG | 0.573814 | 7_3:+19897574 | Msa1096110:CDS |
| ACCATAAGATAAATCCAGAA+AGG | 0.578791 | 7_3:-19900329 | None:intergenic |
| ATGATACTGAGACATTAGGT+AGG | 0.578925 | 7_3:-19903076 | None:intergenic |
| TGCCGAGTACTATCAGCAGC+AGG | 0.579151 | 7_3:+19899700 | Msa1096110:CDS |
| AACCTGCTGCTGATAGTACT+CGG | 0.583062 | 7_3:-19899702 | None:intergenic |
| AAGACACCTAAACCCTCTCC+TGG | 0.583118 | 7_3:+19897707 | Msa1096110:CDS |
| TAATACCTTCAGCTTGACTA+GGG | 0.583412 | 7_3:+19900739 | Msa1096110:CDS |
| GATGATTGGATGGATCCTGT+TGG | 0.588009 | 7_3:+19900938 | Msa1096110:CDS |
| TGAAATGACCGGGAAAATGG+TGG | 0.589389 | 7_3:+19897568 | Msa1096110:exon |
| GTCCAGAAGAGAGTCTAAAG+TGG | 0.592680 | 7_3:-19900304 | None:intergenic |
| TGACTAGGGAACAGGAACGC+TGG | 0.594188 | 7_3:+19900753 | Msa1096110:CDS |
| ATATCATGAGCCTCTTGCAA+AGG | 0.600551 | 7_3:-19902742 | None:intergenic |
| CGGGAAAATGGTGGAGACGG+TGG | 0.602898 | 7_3:+19897577 | Msa1096110:CDS |
| GTTTATGCATCAGTCAGAAG+TGG | 0.609513 | 7_3:+19900261 | Msa1096110:CDS |
| AGTGGATGCAATGATGGCAA+GGG | 0.615205 | 7_3:-19900286 | None:intergenic |
| CCCAAGGGTCGCCATGACAG+AGG | 0.616167 | 7_3:-19900552 | None:intergenic |
| CAATGTGTCTTACAGCCTTG+TGG | 0.618083 | 7_3:-19902648 | None:intergenic |
| CAATCATGAATACCAGGAGA+GGG | 0.618839 | 7_3:-19897719 | None:intergenic |
| CTTTGTACACAATTCGCACA+TGG | 0.622183 | 7_3:+19902533 | Msa1096110:CDS |
| AAGCGCGTGGCGTTAACGTG+AGG | 0.622487 | 7_3:-19897374 | None:intergenic |
| GCAATCATGAATACCAGGAG+AGG | 0.624776 | 7_3:-19897720 | None:intergenic |
| CACATGGTCAATGACAGTGT+TGG | 0.625243 | 7_3:+19902549 | Msa1096110:CDS |
| TGATACTGAGACATTAGGTA+GGG | 0.632284 | 7_3:-19903075 | None:intergenic |
| AATATCGAACATAGCTAACA+TGG | 0.635618 | 7_3:+19900221 | Msa1096110:CDS |
| TGTGTCTTACAGCCTTGTGG+TGG | 0.637411 | 7_3:-19902645 | None:intergenic |
| ATAAGATAAATCCAGAAAGG+AGG | 0.638365 | 7_3:-19900326 | None:intergenic |
| CTGTTCCCTAGTCAAGCTGA+AGG | 0.640310 | 7_3:-19900744 | None:intergenic |
| CCTCTGCTGGAACCACCACA+AGG | 0.649186 | 7_3:+19902633 | Msa1096110:CDS |
| ATGGATGCCTTAGCAGAGCG+TGG | 0.649962 | 7_3:+19899749 | Msa1096110:CDS |
| AAACCTTTGACATTCCGGGA+AGG | 0.650213 | 7_3:-19899775 | None:intergenic |
| TTACAGTGTATATTAGTGTG+CGG | 0.655284 | 7_3:-19900598 | None:intergenic |
| CAATCTCATTAGTAAAAGAG+CGG | 0.658060 | 7_3:-19900832 | None:intergenic |
| AGTACCCTATTGGAAAGAAG+CGG | 0.658390 | 7_3:+19900388 | Msa1096110:CDS |
| ATGAGATGTATCAAAGCGCG+TGG | 0.661711 | 7_3:-19897387 | None:intergenic |
| GCAAGAGGCTCATGATATCG+GGG | 0.674449 | 7_3:+19902747 | Msa1096110:CDS |
| GCTGTGAAGCCTGTCATGCA+AGG | 0.678000 | 7_3:+19902990 | Msa1096110:three_prime_UTR |
| ATAATGGTGACCGGTCATGG+CGG | 0.812917 | 7_3:+19897642 | Msa1096110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATGAAAAATAAATAAAA+AGG | - | chr7_3:19901860-19901879 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTCATTGTTA+AGG | + | chr7_3:19901862-19901881 | Msa1096110:intron | 10.0% |
| !!! | TATTTATTTTTCATTGTTAA+GGG | + | chr7_3:19901863-19901882 | Msa1096110:intron | 10.0% |
| !!! | TCAAAGAACATTTTATAATA+TGG | - | chr7_3:19897917-19897936 | None:intergenic | 15.0% |
| !! | CAATTATCTATAAATTAATG+AGG | - | chr7_3:19900686-19900705 | None:intergenic | 15.0% |
| !! | CTCATTAATTTATAGATAAT+TGG | + | chr7_3:19900684-19900703 | Msa1096110:intron | 15.0% |
| !! | ATTTAAATTTGAATGATCTT+TGG | + | chr7_3:19901331-19901350 | Msa1096110:intron | 15.0% |
| !!! | TACCATTCAATTTTTTTTAA+TGG | + | chr7_3:19901366-19901385 | Msa1096110:intron | 15.0% |
| !! | ATAGGATTAATTTACTAAAT+TGG | + | chr7_3:19901488-19901507 | Msa1096110:intron | 15.0% |
| !!! | TCTTTTTTTAGTTCAAAAAT+TGG | - | chr7_3:19901777-19901796 | None:intergenic | 15.0% |
| !!! | TAGGTTTTTTTTTTTTGAAC+AGG | - | chr7_3:19897442-19897461 | None:intergenic | 20.0% |
| !! | AAACCTAAAAAAATCTTCTA+CGG | + | chr7_3:19897455-19897474 | Msa1096110:five_prime_UTR | 20.0% |
| !!! | ATAATAGCAGAAATGATTTT+TGG | + | chr7_3:19898460-19898479 | Msa1096110:intron | 20.0% |
| !! | TATTATTAACAGCTGTTATT+TGG | - | chr7_3:19898593-19898612 | None:intergenic | 20.0% |
| !!! | TACAATTTGTTTTGTATCAA+TGG | + | chr7_3:19898848-19898867 | Msa1096110:intron | 20.0% |
| !!! | TTTTACTTTATTTCTTGCTA+TGG | + | chr7_3:19899385-19899404 | Msa1096110:intron | 20.0% |
| !!! | ATAAGATGTTTAATTTCCAT+AGG | + | chr7_3:19900042-19900061 | Msa1096110:intron | 20.0% |
| !! | TCAAACAGAATATTAATATG+AGG | - | chr7_3:19900432-19900451 | None:intergenic | 20.0% |
| !! | AAGTATTATAGATTCACATA+AGG | - | chr7_3:19900989-19901008 | None:intergenic | 20.0% |
| !! | ATTGACATTCCTATTTAATT+AGG | - | chr7_3:19901031-19901050 | None:intergenic | 20.0% |
| !! | ATGATTCCTTTCTTATATAT+GGG | + | chr7_3:19901072-19901091 | Msa1096110:intron | 20.0% |
| !! | AACTAAAATGTGTAGATATT+AGG | - | chr7_3:19901201-19901220 | None:intergenic | 20.0% |
| !! | AAACATATTTCCTTATTCAT+TGG | + | chr7_3:19901244-19901263 | Msa1096110:intron | 20.0% |
| !! | GTAAATAAATCCAATGAATA+AGG | - | chr7_3:19901257-19901276 | None:intergenic | 20.0% |
| !! | AGCCATTAAAAAAAATTGAA+TGG | - | chr7_3:19901371-19901390 | None:intergenic | 20.0% |
| !! | ATTATTAAAGAAACAAGAAG+GGG | - | chr7_3:19901459-19901478 | None:intergenic | 20.0% |
| !! | CATTATTAAAGAAACAAGAA+GGG | - | chr7_3:19901460-19901479 | None:intergenic | 20.0% |
| !!! | CTTCTTGTTTCTTTAATAAT+GGG | + | chr7_3:19901459-19901478 | Msa1096110:intron | 20.0% |
| !!! | TTTTTAGTTCAAAAATTGGA+GGG | - | chr7_3:19901773-19901792 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTTCAAAAATTGG+AGG | - | chr7_3:19901774-19901793 | None:intergenic | 20.0% |
| !! | ATTCATCAATTGTTTATCAA+AGG | - | chr7_3:19901971-19901990 | None:intergenic | 20.0% |
| !! | TCCGAAAATATATATACTTT+CGG | + | chr7_3:19903128-19903147 | Msa1096110:three_prime_UTR | 20.0% |
| !!! | TCCGAAAGTATATATATTTT+CGG | - | chr7_3:19903132-19903151 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAACAGGAAAAGT+GGG | - | chr7_3:19897433-19897452 | None:intergenic | 25.0% |
| !!! | TTTTTTTTGAACAGGAAAAG+TGG | - | chr7_3:19897434-19897453 | None:intergenic | 25.0% |
| ! | TTTATTAAGTGTTCTTGTCT+TGG | + | chr7_3:19897804-19897823 | Msa1096110:intron | 25.0% |
| ! | ATGCAATTTCAAAGATTCTA+TGG | - | chr7_3:19897878-19897897 | None:intergenic | 25.0% |
| ! | AAAATGTTCTTTGATGTATC+TGG | + | chr7_3:19897923-19897942 | Msa1096110:intron | 25.0% |
| ! | TTATTCACTTTGTACATGTT+TGG | + | chr7_3:19898140-19898159 | Msa1096110:intron | 25.0% |
| ! | CATTTCTGCTATTATTTGTA+GGG | - | chr7_3:19898455-19898474 | None:intergenic | 25.0% |
| ! | TCATTTCTGCTATTATTTGT+AGG | - | chr7_3:19898456-19898475 | None:intergenic | 25.0% |
| !! | ACTAAGATGATGATGAAAAA+AGG | + | chr7_3:19898525-19898544 | Msa1096110:intron | 25.0% |
| ! | AACAGCTGTTAATAATAAAG+TGG | + | chr7_3:19898596-19898615 | Msa1096110:intron | 25.0% |
| ! | ACAGCTGTTAATAATAAAGT+GGG | + | chr7_3:19898597-19898616 | Msa1096110:intron | 25.0% |
| !! | AAATTGGTCTCCAAAAATAT+CGG | - | chr7_3:19898702-19898721 | None:intergenic | 25.0% |
| ! | TGAATATATAAAGAGCCATA+AGG | - | chr7_3:19898946-19898965 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTGTTGAGAATTT+CGG | + | chr7_3:19899137-19899156 | Msa1096110:intron | 25.0% |
| !!! | GTTTTTGATATATTTGAAGC+TGG | + | chr7_3:19899204-19899223 | Msa1096110:intron | 25.0% |
| !!! | TTTTGCTTTATTTCTTGCTA+TGG | + | chr7_3:19899539-19899558 | Msa1096110:intron | 25.0% |
| !! | ATATGCTTTCTAAGTTTGTT+TGG | + | chr7_3:19899590-19899609 | Msa1096110:intron | 25.0% |
| !!! | ATTCTCTTTTCTGTTTTGTT+AGG | + | chr7_3:19899662-19899681 | Msa1096110:intron | 25.0% |
| ! | TTTAGATCTAGAGATGATAA+AGG | - | chr7_3:19899815-19899834 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTAGCTAAAC+AGG | - | chr7_3:19899848-19899867 | None:intergenic | 25.0% |
| !! | GATGTTTTCATATGAAATCA+TGG | + | chr7_3:19899972-19899991 | Msa1096110:intron | 25.0% |
| !! | AACAGTTAAAAGTAGTTTGT+TGG | + | chr7_3:19900659-19900678 | Msa1096110:intron | 25.0% |
| !! | TTTTACTAATGAGATTGTGA+AGG | + | chr7_3:19900838-19900857 | Msa1096110:CDS | 25.0% |
| ! | CATCCAATCATCAAAATAAT+TGG | - | chr7_3:19900930-19900949 | None:intergenic | 25.0% |
| !!! | CAATTATTTTGATGATTGGA+TGG | + | chr7_3:19900928-19900947 | Msa1096110:CDS | 25.0% |
| ! | GCTTTATAGCCTAATTAAAT+AGG | + | chr7_3:19901019-19901038 | Msa1096110:intron | 25.0% |
| ! | CATATATAAGAAAGGAATCA+TGG | - | chr7_3:19901073-19901092 | None:intergenic | 25.0% |
| ! | CATGATTCCTTTCTTATATA+TGG | + | chr7_3:19901071-19901090 | Msa1096110:intron | 25.0% |
| ! | ATTCTACCCATATATAAGAA+AGG | - | chr7_3:19901081-19901100 | None:intergenic | 25.0% |
| ! | TTCTTATATATGGGTAGAAT+TGG | + | chr7_3:19901081-19901100 | Msa1096110:intron | 25.0% |
| ! | TCTTATATATGGGTAGAATT+GGG | + | chr7_3:19901082-19901101 | Msa1096110:intron | 25.0% |
| ! | CTATATTGAACCAAATATTC+AGG | - | chr7_3:19901422-19901441 | None:intergenic | 25.0% |
| !! | CTGAATATTTGGTTCAATAT+AGG | + | chr7_3:19901420-19901439 | Msa1096110:intron | 25.0% |
| ! | CCATTATTAAAGAAACAAGA+AGG | - | chr7_3:19901461-19901480 | None:intergenic | 25.0% |
| !! | CCTTCTTGTTTCTTTAATAA+TGG | + | chr7_3:19901458-19901477 | Msa1096110:intron | 25.0% |
| !! | TTGTTTCTTTAATAATGGGA+GGG | + | chr7_3:19901463-19901482 | Msa1096110:intron | 25.0% |
| ! | GGATTAATTTACTAAATTGG+TGG | + | chr7_3:19901491-19901510 | Msa1096110:intron | 25.0% |
| ! | AATATTAGAGGGATTTGAAA+TGG | - | chr7_3:19901698-19901717 | None:intergenic | 25.0% |
| !!! | TTTTAGTTCAAAAATTGGAG+GGG | - | chr7_3:19901772-19901791 | None:intergenic | 25.0% |
| !!! | AAAAGGAACATTGATTTACT+TGG | - | chr7_3:19901843-19901862 | None:intergenic | 25.0% |
| !!! | TAGAAAGTGTTATCAAATAG+CGG | + | chr7_3:19902324-19902343 | Msa1096110:intron | 25.0% |
| ! | GATATGTAACAACTATAAGA+TGG | - | chr7_3:19902465-19902484 | None:intergenic | 25.0% |
| ! | AGAATTACACGTAAGTAAAA+GGG | - | chr7_3:19902499-19902518 | None:intergenic | 25.0% |
| ! | AAGAATTACACGTAAGTAAA+AGG | - | chr7_3:19902500-19902519 | None:intergenic | 25.0% |
| !! | TTTCGGATAAATTTTCATCT+TGG | + | chr7_3:19903145-19903164 | Msa1096110:three_prime_UTR | 25.0% |
| !!! | GTTCCGTAGAAGATTTTTTT+AGG | - | chr7_3:19897461-19897480 | None:intergenic | 30.0% |
| !! | TGGTTTTTGTTATAGTAACG+AGG | - | chr7_3:19897483-19897502 | None:intergenic | 30.0% |
| CTTCTTTCAGTTTCTGATAA+TGG | + | chr7_3:19897626-19897645 | Msa1096110:CDS | 30.0% | |
| ! | TGTTTTCTCAACTTAGTTAC+CGG | + | chr7_3:19898068-19898087 | Msa1096110:intron | 30.0% |
| TATAGCACATACACAAACAT+TGG | - | chr7_3:19898102-19898121 | None:intergenic | 30.0% | |
| !! | TTGTGAGTTTGTTGAAATCA+AGG | + | chr7_3:19898168-19898187 | Msa1096110:intron | 30.0% |
| TTAGCTTCTTAGCAAAAAGT+TGG | - | chr7_3:19898301-19898320 | None:intergenic | 30.0% | |
| ! | CTAAATTAGCTCTCTCAAAT+TGG | + | chr7_3:19898317-19898336 | Msa1096110:intron | 30.0% |
| !!! | CACTAGTTCGCTATTTTTTA+CGG | + | chr7_3:19898548-19898567 | Msa1096110:intron | 30.0% |
| ! | TGTTATTTGGACATAAGAAC+TGG | - | chr7_3:19898580-19898599 | None:intergenic | 30.0% |
| CAGCTGTTAATAATAAAGTG+GGG | + | chr7_3:19898598-19898617 | Msa1096110:intron | 30.0% | |
| AGCTGTTAATAATAAAGTGG+GGG | + | chr7_3:19898599-19898618 | Msa1096110:intron | 30.0% | |
| ! | TTGATCTGTTCCGATATTTT+TGG | + | chr7_3:19898689-19898708 | Msa1096110:intron | 30.0% |
| !!! | GATATTTTTGGAGACCAATT+TGG | + | chr7_3:19898701-19898720 | Msa1096110:intron | 30.0% |
| ACCAATTTGGATATTTACTC+AGG | + | chr7_3:19898714-19898733 | Msa1096110:intron | 30.0% | |
| CCAATTTGGATATTTACTCA+GGG | + | chr7_3:19898715-19898734 | Msa1096110:intron | 30.0% | |
| ! | CTGTTGGAATTTTACTGTTT+TGG | + | chr7_3:19898895-19898914 | Msa1096110:intron | 30.0% |
| !! | TAGAACTTGTTTCAGTTTTC+TGG | + | chr7_3:19899000-19899019 | Msa1096110:intron | 30.0% |
| CTTCCAGGTTTAACAAATAT+CGG | + | chr7_3:19899086-19899105 | Msa1096110:intron | 30.0% | |
| TTCCAGGTTTAACAAATATC+GGG | + | chr7_3:19899087-19899106 | Msa1096110:intron | 30.0% | |
| GTTTAACAAATATCGGGATT+TGG | + | chr7_3:19899093-19899112 | Msa1096110:intron | 30.0% | |
| ! | TTGTTGAGAATTTCGGTTTT+TGG | + | chr7_3:19899144-19899163 | Msa1096110:intron | 30.0% |
| ! | TGTTGAGAATTTCGGTTTTT+GGG | + | chr7_3:19899145-19899164 | Msa1096110:intron | 30.0% |
| ! | TTGAAGCTGGATTTAAGTTA+AGG | + | chr7_3:19899217-19899236 | Msa1096110:intron | 30.0% |
| ! | TGAAGCTGGATTTAAGTTAA+GGG | + | chr7_3:19899218-19899237 | Msa1096110:intron | 30.0% |
| AACGTATTGCACTTAAATCA+CGG | - | chr7_3:19899471-19899490 | None:intergenic | 30.0% | |
| AATAGAAACCTTTGACATTC+CGG | - | chr7_3:19899783-19899802 | None:intergenic | 30.0% | |
| GTTTAGCTAAACAGGATTAT+TGG | - | chr7_3:19899840-19899859 | None:intergenic | 30.0% | |
| GCTTATTTGAACTTATGATC+TGG | - | chr7_3:19900098-19900117 | None:intergenic | 30.0% | |
| AATATCGAACATAGCTAACA+TGG | + | chr7_3:19900221-19900240 | Msa1096110:CDS | 30.0% | |
| ATAAGATAAATCCAGAAAGG+AGG | - | chr7_3:19900329-19900348 | None:intergenic | 30.0% | |
| TCCTTTCTGGATTTATCTTA+TGG | + | chr7_3:19900328-19900347 | Msa1096110:CDS | 30.0% | |
| ACCATAAGATAAATCCAGAA+AGG | - | chr7_3:19900332-19900351 | None:intergenic | 30.0% | |
| TAAAGTTCAAAATTGTGTGC+AGG | + | chr7_3:19900514-19900533 | Msa1096110:intron | 30.0% | |
| AAAGTTCAAAATTGTGTGCA+GGG | + | chr7_3:19900515-19900534 | Msa1096110:intron | 30.0% | |
| TTACAGTGTATATTAGTGTG+CGG | - | chr7_3:19900601-19900620 | None:intergenic | 30.0% | |
| CTTGTCTTAATGAAATTTCC+AGG | + | chr7_3:19900715-19900734 | Msa1096110:intron | 30.0% | |
| TATTATGCTTTCAGTGACTT+TGG | + | chr7_3:19900784-19900803 | Msa1096110:CDS | 30.0% | |
| CAATCTCATTAGTAAAAGAG+CGG | - | chr7_3:19900835-19900854 | None:intergenic | 30.0% | |
| !!! | TGGCCAATTATTTTGATGAT+TGG | + | chr7_3:19900924-19900943 | Msa1096110:CDS | 30.0% |
| TTAGGCTATAAAGCAACATA+AGG | - | chr7_3:19901013-19901032 | None:intergenic | 30.0% | |
| TAGTAACTCACTAAAATGTG+TGG | + | chr7_3:19901115-19901134 | Msa1096110:intron | 30.0% | |
| AGTAACTCACTAAAATGTGT+GGG | + | chr7_3:19901116-19901135 | Msa1096110:intron | 30.0% | |
| CATTCAAATACAGCAGAAAA+AGG | - | chr7_3:19901279-19901298 | None:intergenic | 30.0% | |
| ! | TTTTCTGCTGTATTTGAATG+TGG | + | chr7_3:19901279-19901298 | Msa1096110:intron | 30.0% |
| TTGTACTTTGCCTGAATATT+TGG | + | chr7_3:19901409-19901428 | Msa1096110:intron | 30.0% | |
| ! | CTTGTTTCTTTAATAATGGG+AGG | + | chr7_3:19901462-19901481 | Msa1096110:intron | 30.0% |
| ! | TTTAATAATGGGAGGGAAAT+AGG | + | chr7_3:19901470-19901489 | Msa1096110:intron | 30.0% |
| TTTACTAAATTGGTGGAAAG+TGG | + | chr7_3:19901498-19901517 | Msa1096110:intron | 30.0% | |
| TGAACTTCTTAATGTCAGTT+AGG | + | chr7_3:19901636-19901655 | Msa1096110:intron | 30.0% | |
| AAATCCCTCTAATATTGAAC+AGG | + | chr7_3:19901702-19901721 | Msa1096110:intron | 30.0% | |
| AATCCCTCTAATATTGAACA+GGG | + | chr7_3:19901703-19901722 | Msa1096110:intron | 30.0% | |
| !! | ATTTACTTGGTGTTTGATTG+AGG | - | chr7_3:19901830-19901849 | None:intergenic | 30.0% |
| CAAATATATCCTTTCCAAGT+AGG | - | chr7_3:19901932-19901951 | None:intergenic | 30.0% | |
| ATATTTGTCTGCTATCAGTT+TGG | + | chr7_3:19901945-19901964 | Msa1096110:intron | 30.0% | |
| ATGAATGAGATTCATTCCTT+GGG | + | chr7_3:19901985-19902004 | Msa1096110:intron | 30.0% | |
| ATTTCCAGTAATCTCATTCA+TGG | + | chr7_3:19902038-19902057 | Msa1096110:intron | 30.0% | |
| AAGAAGAAATCTCTCATTAC+AGG | + | chr7_3:19902148-19902167 | Msa1096110:intron | 30.0% | |
| ATGTAACAACTATAAGATGG+CGG | - | chr7_3:19902462-19902481 | None:intergenic | 30.0% | |
| GAATTACACGTAAGTAAAAG+GGG | - | chr7_3:19902498-19902517 | None:intergenic | 30.0% | |
| GAAAATGTGAATTCACTTGT+TGG | + | chr7_3:19902571-19902590 | Msa1096110:CDS | 30.0% | |
| TATGAGAAATAGAGTGAAAG+TGG | - | chr7_3:19903029-19903048 | None:intergenic | 30.0% | |
| AAACATGATACTGAGACATT+AGG | - | chr7_3:19903083-19903102 | None:intergenic | 30.0% | |
| AAAAGTGGGAAATGTGTGTA+AGG | - | chr7_3:19897419-19897438 | None:intergenic | 35.0% | |
| AAGAGAAAATGCAGTTAGGT+TGG | - | chr7_3:19897503-19897522 | None:intergenic | 35.0% | |
| GAAGAAGAGAAAATGCAGTT+AGG | - | chr7_3:19897507-19897526 | None:intergenic | 35.0% | |
| !!! | TTTTGAAATGACCGGGAAAA+TGG | + | chr7_3:19897565-19897584 | Msa1096110:exon | 35.0% |
| ! | ACAGACACATTGATTGCATT+TGG | + | chr7_3:19898039-19898058 | Msa1096110:intron | 35.0% |
| CCCTGAGTAAATATCCAAAT+TGG | - | chr7_3:19898718-19898737 | None:intergenic | 35.0% | |
| !! | TTGTTTTGTATCAATGGCTG+TGG | + | chr7_3:19898854-19898873 | Msa1096110:intron | 35.0% |
| ! | AGTTCCTTGTGTTTTCCTTA+TGG | + | chr7_3:19898928-19898947 | Msa1096110:intron | 35.0% |
| !!! | TCTAGTTCACTTTTTCTTCC+AGG | + | chr7_3:19899071-19899090 | Msa1096110:intron | 35.0% |
| ! | ATCCCGATATTTGTTAAACC+TGG | - | chr7_3:19899092-19899111 | None:intergenic | 35.0% |
| !!! | CGGTTTTTGGGTATATATCT+TGG | + | chr7_3:19899157-19899176 | Msa1096110:intron | 35.0% |
| ! | TTTCTTGCTATGGAGTTGTT+TGG | + | chr7_3:19899395-19899414 | Msa1096110:intron | 35.0% |
| ! | TTTCTTGCTATGGAGTTGTT+TGG | + | chr7_3:19899395-19899414 | Msa1096110:intron | 35.0% |
| ! | GTTTGGACTCTGCTATTTAA+TGG | + | chr7_3:19899607-19899626 | Msa1096110:intron | 35.0% |
| ! | GACTCTGCTATTTAATGGAA+AGG | + | chr7_3:19899612-19899631 | Msa1096110:intron | 35.0% |
| ACTCGGCAATATTATCTTCT+TGG | - | chr7_3:19899688-19899707 | None:intergenic | 35.0% | |
| ATAGAAACCTTTGACATTCC+GGG | - | chr7_3:19899782-19899801 | None:intergenic | 35.0% | |
| AGTAAGCTGCAAATAGCTTA+TGG | + | chr7_3:19900007-19900026 | Msa1096110:intron | 35.0% | |
| TTTGACTCTATAGTCTCGTT+TGG | - | chr7_3:19900125-19900144 | None:intergenic | 35.0% | |
| AGCTATGTTCGATATTCTGA+TGG | - | chr7_3:19900217-19900236 | None:intergenic | 35.0% | |
| TCTGACTGATGCATAAACTT+TGG | - | chr7_3:19900259-19900278 | None:intergenic | 35.0% | |
| !! | TTTCCAATAGGGTACTGATA+CGG | - | chr7_3:19900384-19900403 | None:intergenic | 35.0% |
| TTAATATGAGGACTGACCAA+AGG | - | chr7_3:19900420-19900439 | None:intergenic | 35.0% | |
| CAAAATTATTTGCAGCCCAA+GGG | - | chr7_3:19900570-19900589 | None:intergenic | 35.0% | |
| TACAGTGTATATTAGTGTGC+GGG | - | chr7_3:19900600-19900619 | None:intergenic | 35.0% | |
| ATAATACCTTCAGCTTGACT+AGG | + | chr7_3:19900738-19900757 | Msa1096110:CDS | 35.0% | |
| TAATACCTTCAGCTTGACTA+GGG | + | chr7_3:19900739-19900758 | Msa1096110:CDS | 35.0% | |
| AAAAAAGTGATCCTGAGCAT+AGG | - | chr7_3:19900864-19900883 | None:intergenic | 35.0% | |
| GATGTGATCACTAATGTGAT+TGG | + | chr7_3:19900884-19900903 | Msa1096110:CDS | 35.0% | |
| TCACTAAAATGTGTGGGTAT+GGG | + | chr7_3:19901122-19901141 | Msa1096110:intron | 35.0% | |
| AATATAGTGTGTCCAGAATG+TGG | - | chr7_3:19901167-19901186 | None:intergenic | 35.0% | |
| TGTTTGATTGAGGAAAATGG+AGG | - | chr7_3:19901820-19901839 | None:intergenic | 35.0% | |
| TGGTGTTTGATTGAGGAAAA+TGG | - | chr7_3:19901823-19901842 | None:intergenic | 35.0% | |
| TACAAGGATAGAGTCTCATA+AGG | - | chr7_3:19901906-19901925 | None:intergenic | 35.0% | |
| CTATCCTTGTAATACCTACT+TGG | + | chr7_3:19901915-19901934 | Msa1096110:intron | 35.0% | |
| CTTTCCAAGTAGGTATTACA+AGG | - | chr7_3:19901922-19901941 | None:intergenic | 35.0% | |
| CTTGTAATACCTACTTGGAA+AGG | + | chr7_3:19901920-19901939 | Msa1096110:intron | 35.0% | |
| GATGAATGAGATTCATTCCT+TGG | + | chr7_3:19901984-19902003 | Msa1096110:intron | 35.0% | |
| TATGATGCACAAAGTTTGAG+AGG | - | chr7_3:19902225-19902244 | None:intergenic | 35.0% | |
| !! | GAGATTTTAGGAACTACCAT+TGG | + | chr7_3:19902383-19902402 | Msa1096110:intron | 35.0% |
| ! | GTAAGTTTCTGAAGATACTC+TGG | - | chr7_3:19902610-19902629 | None:intergenic | 35.0% |
| TAAGACACATTGACACTGTT+CGG | + | chr7_3:19902659-19902678 | Msa1096110:CDS | 35.0% | |
| CTCAACAATTTCTCAGTACT+TGG | - | chr7_3:19902957-19902976 | None:intergenic | 35.0% | |
| AATAAACTTCCTTGCATGAC+AGG | - | chr7_3:19903002-19903021 | None:intergenic | 35.0% | |
| TGATACTGAGACATTAGGTA+GGG | - | chr7_3:19903078-19903097 | None:intergenic | 35.0% | |
| ATGATACTGAGACATTAGGT+AGG | - | chr7_3:19903079-19903098 | None:intergenic | 35.0% | |
| TGGGAAATGTGTGTAAGGTA+AGG | - | chr7_3:19897414-19897433 | None:intergenic | 40.0% | |
| !!! | GACGACGTTTTTGAAATGAC+CGG | + | chr7_3:19897557-19897576 | Msa1096110:exon | 40.0% |
| !!! | ACGACGTTTTTGAAATGACC+GGG | + | chr7_3:19897558-19897577 | Msa1096110:exon | 40.0% |
| AGTGAAAGCTCTTCTTCGTT+AGG | - | chr7_3:19897608-19897627 | None:intergenic | 40.0% | |
| !! | CAGTTTCTGATAATGGTGAC+CGG | + | chr7_3:19897633-19897652 | Msa1096110:CDS | 40.0% |
| CAATCATGAATACCAGGAGA+GGG | - | chr7_3:19897722-19897741 | None:intergenic | 40.0% | |
| CCATAGCAATCATGAATACC+AGG | - | chr7_3:19897728-19897747 | None:intergenic | 40.0% | |
| CCTGGTATTCATGATTGCTA+TGG | + | chr7_3:19897725-19897744 | Msa1096110:CDS | 40.0% | |
| CATGATTGCTATGGTGTTCT+TGG | + | chr7_3:19897734-19897753 | Msa1096110:CDS | 40.0% | |
| ATGCAATCAATGTGTCTGTG+TGG | - | chr7_3:19898038-19898057 | None:intergenic | 40.0% | |
| ACAAACATTGGACACAACAC+CGG | - | chr7_3:19898090-19898109 | None:intergenic | 40.0% | |
| GGAGCACAATGTCATTAAGT+GGG | - | chr7_3:19898434-19898453 | None:intergenic | 40.0% | |
| AATGGCTGTGGTTGATTATG+AGG | + | chr7_3:19898866-19898885 | Msa1096110:intron | 40.0% | |
| GATTATGAGGAATGTGCTGT+TGG | + | chr7_3:19898879-19898898 | Msa1096110:intron | 40.0% | |
| AGAGCCATAAGGAAAACACA+AGG | - | chr7_3:19898935-19898954 | None:intergenic | 40.0% | |
| ! | TTTCTGGAAGATGCTATCGA+TGG | + | chr7_3:19899016-19899035 | Msa1096110:intron | 40.0% |
| GCTTGAAGGCTTTACTGAAA+TGG | + | chr7_3:19899730-19899749 | Msa1096110:CDS | 40.0% | |
| GCACTTGTGAAACTGTTTGA+GGG | - | chr7_3:19900070-19900089 | None:intergenic | 40.0% | |
| AGCACTTGTGAAACTGTTTG+AGG | - | chr7_3:19900071-19900090 | None:intergenic | 40.0% | |
| CTCTATAGTCTCGTTTGGAT+TGG | - | chr7_3:19900120-19900139 | None:intergenic | 40.0% | |
| GACTATAGAGTCAAATGCCT+TGG | + | chr7_3:19900130-19900149 | Msa1096110:intron | 40.0% | |
| GAGTATCCACAATTGTATGC+AGG | + | chr7_3:19900155-19900174 | Msa1096110:intron | 40.0% | |
| TATCCACAATTGTATGCAGG+AGG | + | chr7_3:19900158-19900177 | Msa1096110:intron | 40.0% | |
| GTTTATGCATCAGTCAGAAG+TGG | + | chr7_3:19900261-19900280 | Msa1096110:CDS | 40.0% | |
| ! | GTCTAAAGTGGATGCAATGA+TGG | - | chr7_3:19900295-19900314 | None:intergenic | 40.0% |
| ATCCACTTTAGACTCTCTTC+TGG | + | chr7_3:19900302-19900321 | Msa1096110:CDS | 40.0% | |
| !! | ATACGGATTTGGTGTTTGCA+TGG | - | chr7_3:19900367-19900386 | None:intergenic | 40.0% |
| !! | ATAGGGTACTGATACGGATT+TGG | - | chr7_3:19900378-19900397 | None:intergenic | 40.0% |
| AATCCGTATCAGTACCCTAT+TGG | + | chr7_3:19900378-19900397 | Msa1096110:CDS | 40.0% | |
| AGTACCCTATTGGAAAGAAG+CGG | + | chr7_3:19900388-19900407 | Msa1096110:CDS | 40.0% | |
| AAATTGTGTGCAGGGAATTC+TGG | + | chr7_3:19900523-19900542 | Msa1096110:intron | 40.0% | |
| CCAAAATTATTTGCAGCCCA+AGG | - | chr7_3:19900571-19900590 | None:intergenic | 40.0% | |
| ! | CCTTGGGCTGCAAATAATTT+TGG | + | chr7_3:19900568-19900587 | Msa1096110:CDS | 40.0% |
| TGATGTAGCTACATTTCCTG+AGG | + | chr7_3:19900623-19900642 | Msa1096110:intron | 40.0% | |
| GTTTGTATCAACTAAGCCTC+AGG | - | chr7_3:19900642-19900661 | None:intergenic | 40.0% | |
| !! | TCAAGCTGAAGGTATTATCC+TGG | - | chr7_3:19900736-19900755 | None:intergenic | 40.0% |
| ! | TGGTCTAATTGCTGCACTTT+TGG | + | chr7_3:19900904-19900923 | Msa1096110:CDS | 40.0% |
| CTTACAATGATAGCACCAAC+AGG | - | chr7_3:19900956-19900975 | None:intergenic | 40.0% | |
| ATATGGGTAGAATTGGGTAC+AGG | + | chr7_3:19901088-19901107 | Msa1096110:intron | 40.0% | |
| CTCACTAAAATGTGTGGGTA+TGG | + | chr7_3:19901121-19901140 | Msa1096110:intron | 40.0% | |
| CTAAATTGGTGGAAAGTGGT+TGG | + | chr7_3:19901502-19901521 | Msa1096110:intron | 40.0% | |
| TGGCCCTGTTCAATATTAGA+GGG | - | chr7_3:19901709-19901728 | None:intergenic | 40.0% | |
| TTGGCCCTGTTCAATATTAG+AGG | - | chr7_3:19901710-19901729 | None:intergenic | 40.0% | |
| ! | AATCCCTCCTCTCTCAATTT+TGG | - | chr7_3:19901729-19901748 | None:intergenic | 40.0% |
| GTTCAAAAATTGGAGGGGAA+GGG | - | chr7_3:19901767-19901786 | None:intergenic | 40.0% | |
| AGTTCAAAAATTGGAGGGGA+AGG | - | chr7_3:19901768-19901787 | None:intergenic | 40.0% | |
| ATTGAGGAAAATGGAGGAGA+GGG | - | chr7_3:19901814-19901833 | None:intergenic | 40.0% | |
| GATTCATTCCTTGGGATAGA+TGG | + | chr7_3:19901993-19902012 | Msa1096110:intron | 40.0% | |
| ATTCATTGCCATCTATCCCA+AGG | - | chr7_3:19902004-19902023 | None:intergenic | 40.0% | |
| TCGACCATGAATGAGATTAC+TGG | - | chr7_3:19902045-19902064 | None:intergenic | 40.0% | |
| CGCAGAAGCTGAAACAATTA+TGG | - | chr7_3:19902088-19902107 | None:intergenic | 40.0% | |
| ATGCAGTGTTGTCAAATAGC+AGG | + | chr7_3:19902244-19902263 | Msa1096110:intron | 40.0% | |
| CTAAAATCTCAGCAGTCAAG+AGG | - | chr7_3:19902373-19902392 | None:intergenic | 40.0% | |
| ! | CTCTTGACTGCTGAGATTTT+AGG | + | chr7_3:19902371-19902390 | Msa1096110:intron | 40.0% |
| TTACACGTAAGTAAAAGGGG+TGG | - | chr7_3:19902495-19902514 | None:intergenic | 40.0% | |
| CTTTGTACACAATTCGCACA+TGG | + | chr7_3:19902533-19902552 | Msa1096110:CDS | 40.0% | |
| AGAAACTTACATACCTCTGC+TGG | + | chr7_3:19902620-19902639 | Msa1096110:CDS | 40.0% | |
| AAGACACATTGACACTGTTC+GGG | + | chr7_3:19902660-19902679 | Msa1096110:CDS | 40.0% | |
| ACTGTTCGGGCATATACATT+CGG | + | chr7_3:19902673-19902692 | Msa1096110:CDS | 40.0% | |
| ATATCATGAGCCTCTTGCAA+AGG | - | chr7_3:19902745-19902764 | None:intergenic | 40.0% | |
| TTGCAAGAGGCTCATGATAT+CGG | + | chr7_3:19902745-19902764 | Msa1096110:CDS | 40.0% | |
| ATGAGATGTATCAAAGCGCG+TGG | - | chr7_3:19897390-19897409 | None:intergenic | 45.0% | |
| TGAAATGACCGGGAAAATGG+TGG | + | chr7_3:19897568-19897587 | Msa1096110:exon | 45.0% | |
| TGAATACCAGGAGAGGGTTT+AGG | - | chr7_3:19897716-19897735 | None:intergenic | 45.0% | |
| GCAATCATGAATACCAGGAG+AGG | - | chr7_3:19897723-19897742 | None:intergenic | 45.0% | |
| TCAATGTGTCTGTGTGGTGT+CGG | - | chr7_3:19898032-19898051 | None:intergenic | 45.0% | |
| TAGCTCTCTCAAATTGGCAC+CGG | + | chr7_3:19898323-19898342 | Msa1096110:intron | 45.0% | |
| TTGGAGTATGCTCCTTCTCA+AGG | - | chr7_3:19898367-19898386 | None:intergenic | 45.0% | |
| ! | TTGAGAAGGAGCATACTCCA+AGG | + | chr7_3:19898366-19898385 | Msa1096110:intron | 45.0% |
| AACACTTGGCCAACCCAAAT+GGG | + | chr7_3:19898398-19898417 | Msa1096110:intron | 45.0% | |
| ! | GGGAGCACAATGTCATTAAG+TGG | - | chr7_3:19898435-19898454 | None:intergenic | 45.0% |
| !! | CATGCTTTTCTAGAGACCAG+AGG | + | chr7_3:19899249-19899268 | Msa1096110:intron | 45.0% |
| TAGTCTGAAAGTTTCGCCTC+TGG | - | chr7_3:19899268-19899287 | None:intergenic | 45.0% | |
| GAGGCGAAACTTTCAGACTA+TGG | + | chr7_3:19899268-19899287 | Msa1096110:intron | 45.0% | |
| AACCTGCTGCTGATAGTACT+CGG | - | chr7_3:19899705-19899724 | None:intergenic | 45.0% | |
| TTTCCTTCCCGGAATGTCAA+AGG | + | chr7_3:19899772-19899791 | Msa1096110:CDS | 45.0% | |
| AAACCTTTGACATTCCGGGA+AGG | - | chr7_3:19899778-19899797 | None:intergenic | 45.0% | |
| AAACTGTTTGAGGGAGCCTA+TGG | - | chr7_3:19900061-19900080 | None:intergenic | 45.0% | |
| CAATTGTGGATACTCAGCCA+AGG | - | chr7_3:19900150-19900169 | None:intergenic | 45.0% | |
| AGTGGATGCAATGATGGCAA+GGG | - | chr7_3:19900289-19900308 | None:intergenic | 45.0% | |
| AAGTGGATGCAATGATGGCA+AGG | - | chr7_3:19900290-19900309 | None:intergenic | 45.0% | |
| GTCCAGAAGAGAGTCTAAAG+TGG | - | chr7_3:19900307-19900326 | None:intergenic | 45.0% | |
| GCATCCGCTTCTTTCCAATA+GGG | - | chr7_3:19900395-19900414 | None:intergenic | 45.0% | |
| TGCATCCGCTTCTTTCCAAT+AGG | - | chr7_3:19900396-19900415 | None:intergenic | 45.0% | |
| AAAGAAGCGGATGCAACCTT+TGG | + | chr7_3:19900401-19900420 | Msa1096110:CDS | 45.0% | |
| GATGATTGGATGGATCCTGT+TGG | + | chr7_3:19900938-19900957 | Msa1096110:CDS | 45.0% | |
| AACAGGGCCAAAATTGAGAG+AGG | + | chr7_3:19901719-19901738 | Msa1096110:intron | 45.0% | |
| AAATGGAGGAGAGGGAAAGA+TGG | - | chr7_3:19901806-19901825 | None:intergenic | 45.0% | |
| GATTGAGGAAAATGGAGGAG+AGG | - | chr7_3:19901815-19901834 | None:intergenic | 45.0% | |
| TGGTCGACAACTGTAGTTAC+TGG | + | chr7_3:19902058-19902077 | Msa1096110:intron | 45.0% | |
| TCAGTGCTCAAAAGAGCCAA+TGG | - | chr7_3:19902402-19902421 | None:intergenic | 45.0% | |
| TGTAATTCTTCCACTGCAGC+TGG | + | chr7_3:19902510-19902529 | Msa1096110:intron | 45.0% | |
| CACATGGTCAATGACAGTGT+TGG | + | chr7_3:19902549-19902568 | Msa1096110:CDS | 45.0% | |
| CAATGTGTCTTACAGCCTTG+TGG | - | chr7_3:19902651-19902670 | None:intergenic | 45.0% | |
| TGCAAGAGGCTCATGATATC+GGG | + | chr7_3:19902746-19902765 | Msa1096110:CDS | 45.0% | |
| GCATGCACAAGCACATTCTT+AGG | + | chr7_3:19902855-19902874 | Msa1096110:CDS | 45.0% | |
| !!! | TTTAATTTCAAATTTATTTA+CGG | + | chr7_3:19898270-19898289 | Msa1096110:intron | 5.0% |
| !! | ATAAAAAATAAAATAAAAAG+AGG | - | chr7_3:19898749-19898768 | None:intergenic | 5.0% |
| !! | CTGATAATGGTGACCGGTCA+TGG | + | chr7_3:19897639-19897658 | Msa1096110:CDS | 50.0% |
| ATAATGGTGACCGGTCATGG+CGG | + | chr7_3:19897642-19897661 | Msa1096110:CDS | 50.0% | |
| AAGACACCTAAACCCTCTCC+TGG | + | chr7_3:19897707-19897726 | Msa1096110:CDS | 50.0% | |
| ! | GCACTGACACTTCTGATCGA+AGG | + | chr7_3:19897973-19897992 | Msa1096110:intron | 50.0% |
| AGCTCTCTCAAATTGGCACC+GGG | + | chr7_3:19898324-19898343 | Msa1096110:intron | 50.0% | |
| TCGAACCTGAGACCTTGAGA+AGG | + | chr7_3:19898352-19898371 | Msa1096110:intron | 50.0% | |
| ATGCTCCTTCTCAAGGTCTC+AGG | - | chr7_3:19898360-19898379 | None:intergenic | 50.0% | |
| !! | CATTTGGGTTGGCCAAGTGT+TGG | - | chr7_3:19898399-19898418 | None:intergenic | 50.0% |
| CAACACTTGGCCAACCCAAA+TGG | + | chr7_3:19898397-19898416 | Msa1096110:intron | 50.0% | |
| ACGTCTGAACCCATTTGGGT+TGG | - | chr7_3:19898410-19898429 | None:intergenic | 50.0% | |
| GGGTACGTCTGAACCCATTT+GGG | - | chr7_3:19898414-19898433 | None:intergenic | 50.0% | |
| TGGGTACGTCTGAACCCATT+TGG | - | chr7_3:19898415-19898434 | None:intergenic | 50.0% | |
| ! | CAGCAGGTTGAAGTGCTTGA+AGG | + | chr7_3:19899716-19899735 | Msa1096110:CDS | 50.0% |
| AAGGAAACCACGCTCTGCTA+AGG | - | chr7_3:19899759-19899778 | None:intergenic | 50.0% | |
| GCTCCTCCTGCATACAATTG+TGG | - | chr7_3:19900164-19900183 | None:intergenic | 50.0% | |
| AGGAGCGAGATAAGTTAGCC+AGG | + | chr7_3:19900178-19900197 | Msa1096110:CDS | 50.0% | |
| TCTCTTCTGGACCTCCTTTC+TGG | + | chr7_3:19900315-19900334 | Msa1096110:CDS | 50.0% | |
| TCTGGTGTTTGCCTCTGTCA+TGG | + | chr7_3:19900541-19900560 | Msa1096110:CDS | 50.0% | |
| CTGTTCCCTAGTCAAGCTGA+AGG | - | chr7_3:19900747-19900766 | None:intergenic | 50.0% | |
| CTTCAGCTTGACTAGGGAAC+AGG | + | chr7_3:19900745-19900764 | Msa1096110:CDS | 50.0% | |
| GATTGTGAAGGCCTATGCTC+AGG | + | chr7_3:19900850-19900869 | Msa1096110:CDS | 50.0% | |
| GTATCCACTGTGCCACATTC+TGG | + | chr7_3:19901152-19901171 | Msa1096110:intron | 50.0% | |
| ! | TGGTGGAAAGTGGTTGGTGT+TGG | + | chr7_3:19901508-19901527 | Msa1096110:intron | 50.0% |
| !! | GTTGGTGTTGGCAGTGTTGA+AGG | + | chr7_3:19901520-19901539 | Msa1096110:intron | 50.0% |
| ! | TGTGTGTGTGGTGGTAGTGA+TGG | + | chr7_3:19901547-19901566 | Msa1096110:intron | 50.0% |
| ! | TGTGTGGTGGTAGTGATGGA+GGG | + | chr7_3:19901551-19901570 | Msa1096110:intron | 50.0% |
| ! | GTAGTGATGGAGGGTTCCTT+TGG | + | chr7_3:19901560-19901579 | Msa1096110:intron | 50.0% |
| GATGGAGGGTTCCTTTGGTA+TGG | + | chr7_3:19901565-19901584 | Msa1096110:intron | 50.0% | |
| GGTTCCTTTGGTATGGAGGT+AGG | + | chr7_3:19901572-19901591 | Msa1096110:intron | 50.0% | |
| CTCTCCTACCTCCATACCAA+AGG | - | chr7_3:19901579-19901598 | None:intergenic | 50.0% | |
| CTTTGGTATGGAGGTAGGAG+AGG | + | chr7_3:19901577-19901596 | Msa1096110:intron | 50.0% | |
| AGGGCCAAAATTGAGAGAGG+AGG | + | chr7_3:19901722-19901741 | Msa1096110:intron | 50.0% | |
| GGGCCAAAATTGAGAGAGGA+GGG | + | chr7_3:19901723-19901742 | Msa1096110:intron | 50.0% | |
| ATAGCAGCGCTTTAGCGCTA+CGG | + | chr7_3:19902268-19902287 | Msa1096110:intron | 50.0% | |
| GCTTTAGCGCTACGGCATAA+CGG | + | chr7_3:19902276-19902295 | Msa1096110:intron | 50.0% | |
| ! | TGTGTCTTACAGCCTTGTGG+TGG | - | chr7_3:19902648-19902667 | None:intergenic | 50.0% |
| CGGCTCTCACTACTTTGTTG+AGG | + | chr7_3:19902693-19902712 | Msa1096110:CDS | 50.0% | |
| ! | TCTTGCAAAGGCATGTCTGC+TGG | - | chr7_3:19902733-19902752 | None:intergenic | 50.0% |
| AGCAGACATGCCTTTGCAAG+AGG | + | chr7_3:19902732-19902751 | Msa1096110:CDS | 50.0% | |
| GCAAGAGGCTCATGATATCG+GGG | + | chr7_3:19902747-19902766 | Msa1096110:CDS | 50.0% | |
| ! | ACAAAAGCACGCTCGATCTC+AGG | - | chr7_3:19902802-19902821 | None:intergenic | 50.0% |
| GAATGTGCTTGTGCATGCTC+AGG | - | chr7_3:19902853-19902872 | None:intergenic | 50.0% | |
| ! | GACCGGGAAAATGGTGGAGA+CGG | + | chr7_3:19897574-19897593 | Msa1096110:CDS | 55.0% |
| ! | CACCGTCTCCACCATTTTCC+CGG | - | chr7_3:19897579-19897598 | None:intergenic | 55.0% |
| CGAAGTTCAACCGCCATGAC+CGG | - | chr7_3:19897655-19897674 | None:intergenic | 55.0% | |
| GCTCTCTCAAATTGGCACCG+GGG | + | chr7_3:19898325-19898344 | Msa1096110:intron | 55.0% | |
| GTCTCAGGTTCGATTCTCCC+CGG | - | chr7_3:19898345-19898364 | None:intergenic | 55.0% | |
| !! | CAAGTGTTGGCGTGAGACCT+TGG | - | chr7_3:19898386-19898405 | None:intergenic | 55.0% |
| CAAGGTCTCACGCCAACACT+TGG | + | chr7_3:19898384-19898403 | Msa1096110:intron | 55.0% | |
| TGCCGAGTACTATCAGCAGC+AGG | + | chr7_3:19899700-19899719 | Msa1096110:CDS | 55.0% | |
| ATGGATGCCTTAGCAGAGCG+TGG | + | chr7_3:19899749-19899768 | Msa1096110:CDS | 55.0% | |
| TGACTAGGGAACAGGAACGC+TGG | + | chr7_3:19900753-19900772 | Msa1096110:CDS | 55.0% | |
| GACTAGGGAACAGGAACGCT+GGG | + | chr7_3:19900754-19900773 | Msa1096110:CDS | 55.0% | |
| GAACAGGAACGCTGGGTTGT+GGG | + | chr7_3:19900761-19900780 | Msa1096110:CDS | 55.0% | |
| GTGTCCAGAATGTGGCACAG+TGG | - | chr7_3:19901159-19901178 | None:intergenic | 55.0% | |
| ! | GTGTTGGCAGTGTTGAAGGC+TGG | + | chr7_3:19901524-19901543 | Msa1096110:intron | 55.0% |
| GTTGAAGGCTGGTGTGTGTG+TGG | + | chr7_3:19901535-19901554 | Msa1096110:intron | 55.0% | |
| ! | GTGTGTGGTGGTAGTGATGG+AGG | + | chr7_3:19901550-19901569 | Msa1096110:intron | 55.0% |
| GGAGGGTTCCTTTGGTATGG+AGG | + | chr7_3:19901568-19901587 | Msa1096110:intron | 55.0% | |
| GAGAGGACATCATGCACTCG+TGG | + | chr7_3:19901594-19901613 | Msa1096110:intron | 55.0% | |
| ACATCATGCACTCGTGGCGA+GGG | + | chr7_3:19901600-19901619 | Msa1096110:intron | 55.0% | |
| TTGGAGGGGAAGGGAACGAA+GGG | - | chr7_3:19901758-19901777 | None:intergenic | 55.0% | |
| ATTGGAGGGGAAGGGAACGA+AGG | - | chr7_3:19901759-19901778 | None:intergenic | 55.0% | |
| GTGTACAAAGCCAGCTGCAG+TGG | - | chr7_3:19902523-19902542 | None:intergenic | 55.0% | |
| GCTGTGAAGCCTGTCATGCA+AGG | + | chr7_3:19902990-19903009 | Msa1096110:three_prime_UTR | 55.0% | |
| AAGCGCGTGGCGTTAACGTG+AGG | - | chr7_3:19897377-19897396 | None:intergenic | 60.0% | |
| ! | CGGGAAAATGGTGGAGACGG+TGG | + | chr7_3:19897577-19897596 | Msa1096110:CDS | 60.0% |
| GCAGAGCGTGGTTTCCTTCC+CGG | + | chr7_3:19899761-19899780 | Msa1096110:CDS | 60.0% | |
| GATGGCAAACGTCTCGCTCC+TGG | - | chr7_3:19900199-19900218 | None:intergenic | 60.0% | |
| CCTCTGTCATGGCGACCCTT+GGG | + | chr7_3:19900552-19900571 | Msa1096110:CDS | 60.0% | |
| GGAACAGGAACGCTGGGTTG+TGG | + | chr7_3:19900760-19900779 | Msa1096110:CDS | 60.0% | |
| GAAGGCTGGTGTGTGTGTGG+TGG | + | chr7_3:19901538-19901557 | Msa1096110:intron | 60.0% | |
| GACATCATGCACTCGTGGCG+AGG | + | chr7_3:19901599-19901618 | Msa1096110:intron | 60.0% | |
| TGCACTCGTGGCGAGGGTAA+AGG | + | chr7_3:19901606-19901625 | Msa1096110:intron | 60.0% | |
| TGGAGGGGAAGGGAACGAAG+GGG | - | chr7_3:19901757-19901776 | None:intergenic | 60.0% | |
| CCTTGTGGTGGTTCCAGCAG+AGG | - | chr7_3:19902636-19902655 | None:intergenic | 60.0% | |
| CCTCTGCTGGAACCACCACA+AGG | + | chr7_3:19902633-19902652 | Msa1096110:CDS | 60.0% | |
| GCCTCTGTCATGGCGACCCT+TGG | + | chr7_3:19900551-19900570 | Msa1096110:CDS | 65.0% | |
| CCCAAGGGTCGCCATGACAG+AGG | - | chr7_3:19900555-19900574 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 19897369 | 19903179 | 19897369 | ID=Msa1096110;Name=Msa1096110 |
| chr7_3 | mRNA | 19897369 | 19903179 | 19897369 | ID=Msa1096110-mRNA-1;Parent=Msa1096110;Name=Msa1096110-mRNA-1;_AED=0.12;_eAED=0.12;_QI=203|1|1|1|1|1|6|303|400 |
| chr7_3 | exon | 19897369 | 19897755 | 19897369 | ID=Msa1096110-mRNA-1:exon:4287;Parent=Msa1096110-mRNA-1 |
| chr7_3 | exon | 19899684 | 19899793 | 19899684 | ID=Msa1096110-mRNA-1:exon:4288;Parent=Msa1096110-mRNA-1 |
| chr7_3 | exon | 19900177 | 19900422 | 19900177 | ID=Msa1096110-mRNA-1:exon:4289;Parent=Msa1096110-mRNA-1 |
| chr7_3 | exon | 19900536 | 19900616 | 19900536 | ID=Msa1096110-mRNA-1:exon:4290;Parent=Msa1096110-mRNA-1 |
| chr7_3 | exon | 19900737 | 19900970 | 19900737 | ID=Msa1096110-mRNA-1:exon:4291;Parent=Msa1096110-mRNA-1 |
| chr7_3 | exon | 19902529 | 19903179 | 19902529 | ID=Msa1096110-mRNA-1:exon:4292;Parent=Msa1096110-mRNA-1 |
| chr7_3 | five_prime_UTR | 19897369 | 19897571 | 19897369 | ID=Msa1096110-mRNA-1:five_prime_utr;Parent=Msa1096110-mRNA-1 |
| chr7_3 | CDS | 19897572 | 19897755 | 19897572 | ID=Msa1096110-mRNA-1:cds;Parent=Msa1096110-mRNA-1 |
| chr7_3 | CDS | 19899684 | 19899793 | 19899684 | ID=Msa1096110-mRNA-1:cds;Parent=Msa1096110-mRNA-1 |
| chr7_3 | CDS | 19900177 | 19900422 | 19900177 | ID=Msa1096110-mRNA-1:cds;Parent=Msa1096110-mRNA-1 |
| chr7_3 | CDS | 19900536 | 19900616 | 19900536 | ID=Msa1096110-mRNA-1:cds;Parent=Msa1096110-mRNA-1 |
| chr7_3 | CDS | 19900737 | 19900970 | 19900737 | ID=Msa1096110-mRNA-1:cds;Parent=Msa1096110-mRNA-1 |
| chr7_3 | CDS | 19902529 | 19902876 | 19902529 | ID=Msa1096110-mRNA-1:cds;Parent=Msa1096110-mRNA-1 |
| chr7_3 | three_prime_UTR | 19902877 | 19903179 | 19902877 | ID=Msa1096110-mRNA-1:three_prime_utr;Parent=Msa1096110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
