AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978440 MtrunA17_Chr6g0457251 91.765 425 28 2 1 423 1 420 0.0 785
Msa0978440 MtrunA17_Chr2g0318441 31.646 158 107 1 204 361 144 300 3.73e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978440 AT5G38510.2 43.468 421 187 10 1 412 51 429 1.79e-110 332
Msa0978440 AT5G38510.3 43.468 421 187 10 1 412 51 429 1.79e-110 332
Msa0978440 AT5G38510.1 43.468 421 187 10 1 412 51 429 1.79e-110 332
Msa0978440 AT1G25290.2 27.228 202 131 4 163 361 122 310 9.56e-17 81.3
Msa0978440 AT1G25290.1 26.794 209 130 5 163 361 122 317 2.59e-15 77.0
Msa0978440 AT1G12750.4 28.743 167 109 3 216 381 96 253 9.66e-12 66.2
Msa0978440 AT1G12750.7 28.743 167 109 3 216 381 96 253 9.66e-12 66.2
Msa0978440 AT1G12750.6 28.743 167 109 3 216 381 96 253 9.66e-12 66.2
Msa0978440 AT1G12750.3 28.743 167 109 3 216 381 96 253 9.66e-12 66.2
Msa0978440 AT1G12750.1 28.743 167 109 3 216 381 96 253 9.66e-12 66.2
Msa0978440 AT1G63120.1 32.374 139 81 3 218 350 111 242 6.03e-11 63.9
Msa0978440 AT5G07250.1 27.876 226 144 5 159 375 76 291 7.08e-11 63.9

Find 100 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATACTTGGTGGAGTTTC+TGG 0.113845 6_4:-14478664 Msa0978440:CDS
AGATCATTAGATTCTTATTT+TGG 0.146046 6_4:-14480670 Msa0978440:CDS
GCTTATAACACCAATGTTTC+TGG 0.197615 6_4:-14479265 Msa0978440:intron
CTTATATTGACATAAGTATT+TGG 0.197910 6_4:+14480095 None:intergenic
TCTAAGTTATCATTCCTTAT+AGG 0.220572 6_4:+14479357 None:intergenic
TGTTGGGCCCTTGTATCATT+TGG 0.251678 6_4:-14478733 Msa0978440:CDS
ACTTAAAACAACGACGAATA+TGG 0.256645 6_4:+14477785 None:intergenic
CAGATTCTCAAATGAAGTTT+AGG 0.267806 6_4:+14481502 None:intergenic
CTACCTGTTCAAGTTTGTTA+TGG 0.284735 6_4:+14481475 None:intergenic
AGTCCTTCTCCACCGGTTCC+TGG 0.285788 6_4:+14477858 None:intergenic
ATCTTATGTTGAAAATTCTA+AGG 0.311682 6_4:-14480180 Msa0978440:CDS
AAGAACACATGCATAATTCT+TGG 0.314969 6_4:-14480772 Msa0978440:CDS
GTTGGGCCCTTGTATCATTT+GGG 0.328782 6_4:-14478732 Msa0978440:CDS
TTGAAATAGCAAGTCCTATA+AGG 0.329116 6_4:-14479371 Msa0978440:CDS
TACCTGTTCAAGTTTGTTAT+GGG 0.338540 6_4:+14481476 None:intergenic
TCTTGGCTGATAATTTGTTT+TGG 0.349202 6_4:+14480143 None:intergenic
TTCACATGGCTCTGAGTTGT+TGG 0.358549 6_4:-14478750 Msa0978440:CDS
GCAATAATTATTACAGCTCT+TGG 0.373294 6_4:-14478126 Msa0978440:CDS
AAGATGCCACAAGAGATTCT+TGG 0.377102 6_4:+14480198 None:intergenic
AATTTGTTCTTTGAGTATCT+TGG 0.388326 6_4:+14480126 None:intergenic
CTCAAACTTGTTAGAAAATA+CGG 0.390191 6_4:-14477837 Msa0978440:CDS
TCACATGGCTCTGAGTTGTT+GGG 0.398292 6_4:-14478749 Msa0978440:CDS
TATCTTGGCAAAGTAAATAA+AGG 0.400520 6_4:-14480532 Msa0978440:intron
AACTAGTTCGGCTCTTCAGC+TGG 0.406212 6_4:-14477892 Msa0978440:CDS
ATTCAGATTGACCATTTCCT+TGG 0.415293 6_4:+14480584 None:intergenic
ATATGGCTTTCTAACTAGTT+CGG 0.422427 6_4:-14477904 Msa0978440:CDS
GCTTTCACGGGCATGGCATA+TGG 0.423274 6_4:-14477921 Msa0978440:CDS
TGAAAACCAAAGTACAATAC+TGG 0.430026 6_4:+14481450 None:intergenic
TATCTGGTGCAGAGGTATAT+TGG 0.430725 6_4:-14479421 Msa0978440:intron
TAGTCACTGTACTTGTACTT+TGG 0.433635 6_4:-14481416 Msa0978440:five_prime_UTR
CATTTGCAATACTTGGTGCT+TGG 0.441463 6_4:-14478215 Msa0978440:CDS
AGCCCATAACAAACTTGAAC+AGG 0.443254 6_4:-14481478 Msa0978440:five_prime_UTR
GAGTCTCTTGATGAGTATCT+TGG 0.444739 6_4:-14480547 Msa0978440:CDS
TACCTCTTATAAGCCTCCTT+TGG 0.445392 6_4:+14481575 None:intergenic
GGACCTGCATTTGCAATACT+TGG 0.446406 6_4:-14478222 Msa0978440:CDS
ACACTCGGGAGCAGCTTTCA+CGG 0.450958 6_4:-14477934 Msa0978440:CDS
CATACATACCACTCATCAAT+TGG 0.455437 6_4:+14478081 None:intergenic
GGTTTCATATTATGCAACCT+TGG 0.469478 6_4:-14478105 Msa0978440:CDS
AAAGATAAACCATTTGATCA+TGG 0.472368 6_4:-14479304 Msa0978440:CDS
AGAAGAATCCAAGGTGTTAG+TGG 0.474212 6_4:-14480074 Msa0978440:CDS
ATTCTCCAACCATGATCAAA+TGG 0.479448 6_4:+14479295 None:intergenic
ATTATGCATGTGTTCTTGTA+AGG 0.479821 6_4:+14480778 None:intergenic
ATAAACCATTTGATCATGGT+TGG 0.480102 6_4:-14479300 Msa0978440:CDS
TTCTTGATCTACATACTTGG+TGG 0.485241 6_4:-14478673 Msa0978440:CDS
CATCACCTCATTTGATGCAT+CGG 0.492626 6_4:+14480615 None:intergenic
GACAAGACATCACCAGGAAC+CGG 0.493358 6_4:-14477870 Msa0978440:CDS
ATGAATGTGCACCAAGGAAA+TGG 0.493528 6_4:-14480595 Msa0978440:CDS
TTCCAAAGGAGGCTTATAAG+AGG 0.498166 6_4:-14481577 Msa0978440:five_prime_UTR
CACTCGGGAGCAGCTTTCAC+GGG 0.499207 6_4:-14477933 Msa0978440:CDS
CAATCTTGTACCAGAAACAT+TGG 0.503254 6_4:+14479255 None:intergenic
GGGAGCAGCTTTCACGGGCA+TGG 0.506175 6_4:-14477928 Msa0978440:CDS
CCTCAAGTTTGCAAAGGCTA+TGG 0.508897 6_4:-14478709 Msa0978440:CDS
CTTGAGGCCCAAATGATACA+AGG 0.512714 6_4:+14478725 None:intergenic
TGAAGTAGCTGTTGTAGCCT+TGG 0.516069 6_4:-14477712 Msa0978440:CDS
GTAGGTCCAGTATTGTACTT+TGG 0.522345 6_4:-14481456 Msa0978440:five_prime_UTR
AAGTTTGAGTCCTTCTCCAC+CGG 0.525798 6_4:+14477851 None:intergenic
GACTTACATGAGGTAAAGAC+TGG 0.528142 6_4:+14480007 None:intergenic
ATCTTTGCTCCGTATAACAT+TGG 0.531452 6_4:+14479321 None:intergenic
GTGCCACCAACAGTTGGATC+TGG 0.531981 6_4:+14478616 None:intergenic
AATTTAATTCATCCAACCAT+GGG 0.533435 6_4:+14477552 None:intergenic
CAGCTGGACAAGACATCACC+AGG 0.537373 6_4:-14477876 Msa0978440:CDS
TCACCAGGAACCGGTGGAGA+AGG 0.542931 6_4:-14477861 Msa0978440:CDS
ATTTGATCATGGTTGGAGAA+TGG 0.543964 6_4:-14479293 Msa0978440:CDS
ATTCATTTGTAGGTCACACT+CGG 0.558948 6_4:-14477949 Msa0978440:intron
AAATCTGAATGAAGAAAGGG+TGG 0.563543 6_4:-14477521 Msa0978440:three_prime_UTR
GCACCAAGTATTGCAAATGC+AGG 0.566312 6_4:+14478219 None:intergenic
AGAAGGAACTTATCAACCCA+TGG 0.567625 6_4:-14477568 Msa0978440:three_prime_UTR
AAATTTAATTCATCCAACCA+TGG 0.567628 6_4:+14477551 None:intergenic
TAGAAAACAGTTTCCAAAGG+AGG 0.572431 6_4:-14481588 Msa0978440:five_prime_UTR
TTCTGACAATCTATTCAAGA+AGG 0.575053 6_4:-14478148 Msa0978440:CDS
GTCAATATAAGAAGAATCCA+AGG 0.577070 6_4:-14480083 Msa0978440:CDS
CTTACGGTGCCACCAACAGT+TGG 0.578810 6_4:+14478610 None:intergenic
TAGTAGAAAACAGTTTCCAA+AGG 0.580535 6_4:-14481591 Msa0978440:five_prime_UTR
ACACCAGATCCAACTGTTGG+TGG 0.580925 6_4:-14478619 Msa0978440:CDS
GGAACTTATCAACCCATGGT+TGG 0.581849 6_4:-14477564 Msa0978440:three_prime_UTR
CAGATGCCAATGCATTGAGA+GGG 0.584447 6_4:+14477739 None:intergenic
TTTGGGCCTCAAGTTTGCAA+AGG 0.592340 6_4:-14478715 Msa0978440:CDS
CCATAGCCTTTGCAAACTTG+AGG 0.593757 6_4:+14478709 None:intergenic
ACAGATGCCAATGCATTGAG+AGG 0.600042 6_4:+14477738 None:intergenic
TGTTTCCGATGCATCAAATG+AGG 0.607429 6_4:-14480620 Msa0978440:CDS
TCATGGTTGGAGAATGGTGG+AGG 0.615589 6_4:-14479287 Msa0978440:CDS
TTCATTTGTAGGTCACACTC+GGG 0.616886 6_4:-14477948 Msa0978440:intron
ATATTGAACCACTAACACCT+TGG 0.618553 6_4:+14480066 None:intergenic
TCTTAGTTTCTTCTCAGCAG+AGG 0.618686 6_4:+14480690 None:intergenic
ATATTGGCATCAGTGAACAT+TGG 0.618895 6_4:-14479405 Msa0978440:CDS
AAGACATCACCAGGAACCGG+TGG 0.633375 6_4:-14477867 Msa0978440:CDS
TTTCTACTATAAATTGTGTG+AGG 0.637475 6_4:+14481605 None:intergenic
CATACACCAGATCCAACTGT+TGG 0.642520 6_4:-14478622 Msa0978440:CDS
AAGTATTGACATATACTCCA+AGG 0.644028 6_4:+14477695 None:intergenic
ACTATAAATTGTGTGAGGTG+TGG 0.651131 6_4:+14481610 None:intergenic
TGATCATGGTTGGAGAATGG+TGG 0.656061 6_4:-14479290 Msa0978440:CDS
ACCTTGGTCCAATTGATGAG+TGG 0.663630 6_4:-14478089 Msa0978440:intron
TTGAGGCCCAAATGATACAA+GGG 0.665598 6_4:+14478726 None:intergenic
GATGCCAATGCATTGAGAGG+GGG 0.668617 6_4:+14477741 None:intergenic
CATAAACCAAGAATCTCTTG+TGG 0.669264 6_4:-14480204 Msa0978440:CDS
AGATGCCAATGCATTGAGAG+GGG 0.670513 6_4:+14477740 None:intergenic
GCATGCAGGAATATTTCACA+TGG 0.672691 6_4:-14478764 Msa0978440:CDS
CATAACAAACTTGAACAGGT+AGG 0.678932 6_4:-14481474 Msa0978440:five_prime_UTR
ACCACTCATCAATTGGACCA+AGG 0.692729 6_4:+14478088 None:intergenic
GAGGTGATGAATGTGCACCA+AGG 0.774607 6_4:-14480601 Msa0978440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATGATAAATAAAAG+AGG + chr6_4:14480243-14480262 None:intergenic 10.0%
!! AACAAAATAAAATTGTCATA+AGG + chr6_4:14477781-14477800 None:intergenic 15.0%
!!! GAAATGTTATATATGAATTT+TGG + chr6_4:14478850-14478869 None:intergenic 15.0%
!! AATTTAATTCTTGCAAAATT+TGG + chr6_4:14480726-14480745 None:intergenic 15.0%
!!! AAATTTTATTACATTTAAGG+AGG + chr6_4:14480789-14480808 None:intergenic 15.0%
!! ATAAATTTAACTGCAAGATT+TGG - chr6_4:14478040-14478059 Msa0978440:intron 20.0%
!!! TAATAAGGTATTTACTAAAG+AGG + chr6_4:14478086-14478105 None:intergenic 20.0%
!! ATTCACACTCTAATTTAATA+AGG + chr6_4:14478101-14478120 None:intergenic 20.0%
!!! TTGATTTTTTCATCAACTAT+TGG + chr6_4:14478131-14478150 None:intergenic 20.0%
!!! AGATCATTAGATTCTTATTT+TGG - chr6_4:14478475-14478494 Msa0978440:intron 20.0%
!! ATCTTATGTTGAAAATTCTA+AGG - chr6_4:14478965-14478984 Msa0978440:intron 20.0%
!!! ATACTCAAAGAACAAATTTT+AGG - chr6_4:14479024-14479043 Msa0978440:intron 20.0%
!! CTTATATTGACATAAGTATT+TGG + chr6_4:14479053-14479072 None:intergenic 20.0%
!! CTAATTTACCTATGAAATAT+AGG - chr6_4:14479365-14479384 Msa0978440:CDS 20.0%
!!! AATCAATTAACTTTTACCAT+CGG + chr6_4:14479534-14479553 None:intergenic 20.0%
!! TAGTTTCATGTATATATATG+TGG + chr6_4:14479939-14479958 None:intergenic 20.0%
!! ATCATTTAACTCTATATTTC+TGG - chr6_4:14479986-14480005 Msa0978440:intron 20.0%
!!! ATTTTACTATGAATTAAGGT+GGG + chr6_4:14480586-14480605 None:intergenic 20.0%
!!! CATGATTTTACTATGAATTA+AGG + chr6_4:14480590-14480609 None:intergenic 20.0%
!! TAATTCATAGTAAAATCATG+CGG - chr6_4:14480590-14480609 Msa0978440:CDS 20.0%
!!! ATTGATCCTATATTTTCATT+AGG - chr6_4:14480743-14480762 Msa0978440:CDS 20.0%
!! AAACTTAAAGACAACAAAAT+AGG + chr6_4:14480883-14480902 None:intergenic 20.0%
! TTTCTACTATAAATTGTGTG+AGG + chr6_4:14477543-14477562 None:intergenic 25.0%
!!! TGTACTTTGGTATTTTTAAG+AGG - chr6_4:14477742-14477761 Msa0978440:CDS 25.0%
! GCAAAATAAATAGCAAGTAT+TGG - chr6_4:14478188-14478207 Msa0978440:CDS 25.0%
!! TTTTCTATTTTCTCTTCTTC+AGG - chr6_4:14478309-14478328 Msa0978440:intron 25.0%
! TATCTTGGCAAAGTAAATAA+AGG - chr6_4:14478613-14478632 Msa0978440:intron 25.0%
!!! GGTAAAGTGTAATTACTTTT+TGG - chr6_4:14478634-14478653 Msa0978440:CDS 25.0%
! AATTTCTACAACAATTTCGA+TGG + chr6_4:14478809-14478828 None:intergenic 25.0%
!! ATGTAAGTTTTTATGTATGC+AGG - chr6_4:14478918-14478937 Msa0978440:intron 25.0%
!! AATTTGTTCTTTGAGTATCT+TGG + chr6_4:14479022-14479041 None:intergenic 25.0%
!! TCTCAGTTATATTCTTTTGT+CGG - chr6_4:14479258-14479277 Msa0978440:intron 25.0%
! CTGCGAATATACAAATTTAA+AGG - chr6_4:14479593-14479612 Msa0978440:intron 25.0%
! AATTGAGTGAATATGCAAAT+TGG + chr6_4:14479651-14479670 None:intergenic 25.0%
! TCTAAGTTATCATTCCTTAT+AGG + chr6_4:14479791-14479810 None:intergenic 25.0%
!! TTTTCACTTCCAATGTTATA+CGG - chr6_4:14479815-14479834 Msa0978440:intron 25.0%
! AAAGATAAACCATTTGATCA+TGG - chr6_4:14479841-14479860 Msa0978440:intron 25.0%
! TCATGTATATATATGTGGAA+TGG + chr6_4:14479934-14479953 None:intergenic 25.0%
!! TATATTTCTGATTTCTCAGA+TGG + chr6_4:14480042-14480061 None:intergenic 25.0%
!!! TGGTAGATTTTTAAAACAAC+TGG + chr6_4:14480080-14480099 None:intergenic 25.0%
! AACAAAACTAGAAATCAAAC+CGG + chr6_4:14480298-14480317 None:intergenic 25.0%
!! TTTTTCTTGATCTACATACT+TGG - chr6_4:14480469-14480488 Msa0978440:intron 25.0%
!!! GAATTTTAGAGTGATACTTA+CGG + chr6_4:14480554-14480573 None:intergenic 25.0%
!! GATTTTACTATGAATTAAGG+TGG + chr6_4:14480587-14480606 None:intergenic 25.0%
!!! TGACATCTCTATTTTGAATT+TGG + chr6_4:14480964-14480983 None:intergenic 25.0%
! TTTCAATTCGATGAACATTT+CGG + chr6_4:14481153-14481172 None:intergenic 25.0%
!! ATTATTGGTGATTCATTTGT+AGG - chr6_4:14481186-14481205 Msa0978440:intron 25.0%
!!! CTCAAACTTGTTAGAAAATA+CGG - chr6_4:14481308-14481327 Msa0978440:intron 25.0%
! AATTTAATTCATCCAACCAT+GGG + chr6_4:14481596-14481615 None:intergenic 25.0%
! AAATTTAATTCATCCAACCA+TGG + chr6_4:14481597-14481616 None:intergenic 25.0%
!! TTCTTCATTCAGATTTTTCA+GGG + chr6_4:14481620-14481639 None:intergenic 25.0%
!! TTTCTTCATTCAGATTTTTC+AGG + chr6_4:14481621-14481640 None:intergenic 25.0%
! TGAAAAATCTGAATGAAGAA+AGG - chr6_4:14481620-14481639 Msa0978440:five_prime_UTR 25.0%
! GAAAAATCTGAATGAAGAAA+GGG - chr6_4:14481621-14481640 Msa0978440:five_prime_UTR 25.0%
TAGTAGAAAACAGTTTCCAA+AGG - chr6_4:14477554-14477573 Msa0978440:three_prime_UTR 30.0%
CAGATTCTCAAATGAAGTTT+AGG + chr6_4:14477646-14477665 None:intergenic 30.0%
!! TACCTGTTCAAGTTTGTTAT+GGG + chr6_4:14477672-14477691 None:intergenic 30.0%
TGAAAACCAAAGTACAATAC+TGG + chr6_4:14477698-14477717 None:intergenic 30.0%
AAGACAATCTTGTTCATCAT+TGG - chr6_4:14477902-14477921 Msa0978440:CDS 30.0%
TTCATCTAATTGCCAGAATA+AGG - chr6_4:14477987-14478006 Msa0978440:intron 30.0%
!! TGCAAGATTTGGTTGTATTT+TGG - chr6_4:14478051-14478070 Msa0978440:intron 30.0%
GGTATTTACTAAAGAGGAAT+TGG + chr6_4:14478080-14478099 None:intergenic 30.0%
TAACACACACCTAGTAATAA+TGG - chr6_4:14478245-14478264 Msa0978440:intron 30.0%
ATTATGCATGTGTTCTTGTA+AGG + chr6_4:14478370-14478389 None:intergenic 30.0%
AAGAACACATGCATAATTCT+TGG - chr6_4:14478373-14478392 Msa0978440:intron 30.0%
GCTTAATTACGTTTAGTAGA+TGG + chr6_4:14478766-14478785 None:intergenic 30.0%
! TGAAGTATTTGCTTAATGCA+TGG - chr6_4:14478882-14478901 Msa0978440:intron 30.0%
!!! TCTTGGCTGATAATTTGTTT+TGG + chr6_4:14479005-14479024 None:intergenic 30.0%
GTCAATATAAGAAGAATCCA+AGG - chr6_4:14479062-14479081 Msa0978440:intron 30.0%
ACAAAACAGGAATTTATGAC+AGG + chr6_4:14479168-14479187 None:intergenic 30.0%
TGAGATGTCCTATATTTCAT+AGG + chr6_4:14479376-14479395 None:intergenic 30.0%
ATGAAATATAGGACATCTCA+AGG - chr6_4:14479376-14479395 Msa0978440:CDS 30.0%
! GTAATAGGAAAATTAGTCTC+CGG - chr6_4:14479462-14479481 Msa0978440:intron 30.0%
! ACTGACACTTTACGATTTTA+CGG - chr6_4:14479564-14479583 Msa0978440:intron 30.0%
!!! TAAAGGACTATTTTGACAGA+CGG - chr6_4:14479610-14479629 Msa0978440:intron 30.0%
TCCTTCTATGTTGTTATATC+TGG - chr6_4:14479708-14479727 Msa0978440:intron 30.0%
ACCAGATATAACAACATAGA+AGG + chr6_4:14479712-14479731 None:intergenic 30.0%
TTGAAATAGCAAGTCCTATA+AGG - chr6_4:14479774-14479793 Msa0978440:intron 30.0%
ATAAACCATTTGATCATGGT+TGG - chr6_4:14479845-14479864 Msa0978440:intron 30.0%
TCTGGTACAAGATTGAAAAT+TGG - chr6_4:14479898-14479917 Msa0978440:intron 30.0%
CTGGTACAAGATTGAAAATT+GGG - chr6_4:14479899-14479918 Msa0978440:intron 30.0%
!! TCTATATTTCTGGTACAAGA+TGG - chr6_4:14479996-14480015 Msa0978440:intron 30.0%
AATCAGAAATATAGTGCATC+AGG - chr6_4:14480049-14480068 Msa0978440:CDS 30.0%
TAAAAATCTACCAAACCGAT+CGG - chr6_4:14480087-14480106 Msa0978440:CDS 30.0%
AACCAAGATTAATAACTGCA+TGG - chr6_4:14480697-14480716 Msa0978440:CDS 30.0%
TTCCATGCAGTTATTAATCT+TGG + chr6_4:14480702-14480721 None:intergenic 30.0%
CAGAGACCTAATGAAAATAT+AGG + chr6_4:14480752-14480771 None:intergenic 30.0%
TTATGCAAATGTTGTGTAAG+TGG - chr6_4:14480821-14480840 Msa0978440:intron 30.0%
!!! CTTTTGCAATGTGTTACTTT+CGG - chr6_4:14480852-14480871 Msa0978440:intron 30.0%
TTCTTTGTCTAACATGAATC+AGG - chr6_4:14480901-14480920 Msa0978440:intron 30.0%
TCTTTGTCTAACATGAATCA+GGG - chr6_4:14480902-14480921 Msa0978440:intron 30.0%
TTCTGACAATCTATTCAAGA+AGG - chr6_4:14480997-14481016 Msa0978440:intron 30.0%
GCAATAATTATTACAGCTCT+TGG - chr6_4:14481019-14481038 Msa0978440:intron 30.0%
ATATGGCTTTCTAACTAGTT+CGG - chr6_4:14481241-14481260 Msa0978440:intron 30.0%
ACTTAAAACAACGACGAATA+TGG + chr6_4:14481363-14481382 None:intergenic 30.0%
! AAGTTCATTCCTTTTGCTTA+TGG - chr6_4:14481379-14481398 Msa0978440:intron 30.0%
!! AAGTATTGACATATACTCCA+AGG + chr6_4:14481453-14481472 None:intergenic 30.0%
!! GTTTTTGATGATCTTTGAGA+AGG - chr6_4:14481560-14481579 Msa0978440:five_prime_UTR 30.0%
ACTATAAATTGTGTGAGGTG+TGG + chr6_4:14477538-14477557 None:intergenic 35.0%
TAGAAAACAGTTTCCAAAGG+AGG - chr6_4:14477557-14477576 Msa0978440:three_prime_UTR 35.0%
!! CTACCTGTTCAAGTTTGTTA+TGG + chr6_4:14477673-14477692 None:intergenic 35.0%
CATAACAAACTTGAACAGGT+AGG - chr6_4:14477671-14477690 Msa0978440:exon 35.0%
!!! TACTTTGGTTTTCAGCTTCT+TGG - chr6_4:14477704-14477723 Msa0978440:CDS 35.0%
TAGTCACTGTACTTGTACTT+TGG - chr6_4:14477729-14477748 Msa0978440:CDS 35.0%
GACATTGCAGCTCTTAAATT+AGG - chr6_4:14478009-14478028 Msa0978440:intron 35.0%
GCGTTCTTACCATTATTACT+AGG + chr6_4:14478257-14478276 None:intergenic 35.0%
!! TTCTCTTCTTCAGGTTTTCA+TGG - chr6_4:14478318-14478337 Msa0978440:intron 35.0%
ATTCAGATTGACCATTTCCT+TGG + chr6_4:14478564-14478583 None:intergenic 35.0%
! TGATTTTAAGCGTCATTTGC+AGG + chr6_4:14478685-14478704 None:intergenic 35.0%
GCAAATGACGCTTAAAATCA+TGG - chr6_4:14478685-14478704 Msa0978440:CDS 35.0%
TCATGGATATTTGCGTTTAG+TGG - chr6_4:14478702-14478721 Msa0978440:CDS 35.0%
GATGGTTGACGAATATAACA+AGG + chr6_4:14478748-14478767 None:intergenic 35.0%
CATAAACCAAGAATCTCTTG+TGG - chr6_4:14478941-14478960 Msa0978440:intron 35.0%
ATATTGAACCACTAACACCT+TGG + chr6_4:14479082-14479101 None:intergenic 35.0%
GGAGTTTGAAAAGACAAAAC+AGG + chr6_4:14479181-14479200 None:intergenic 35.0%
! TTTTCAAACTCCACTCTTGT+CGG - chr6_4:14479189-14479208 Msa0978440:intron 35.0%
! CAGTTATATTCTTTTGTCGG+AGG - chr6_4:14479261-14479280 Msa0978440:intron 35.0%
GACATCACTGACATGTTATT+AGG - chr6_4:14479293-14479312 Msa0978440:CDS 35.0%
TAGTGAGCTGACATTGATAT+GGG + chr6_4:14479341-14479360 None:intergenic 35.0%
ATATCAATGTCAGCTCACTA+GGG - chr6_4:14479341-14479360 Msa0978440:CDS 35.0%
ATTTCTCCATGAGAGAACTA+AGG - chr6_4:14479440-14479459 Msa0978440:intron 35.0%
! CTATTACCTTAGTTCTCTCA+TGG + chr6_4:14479449-14479468 None:intergenic 35.0%
CATGAGAGAACTAAGGTAAT+AGG - chr6_4:14479447-14479466 Msa0978440:intron 35.0%
! TTTTACCATCGGACACTATA+AGG + chr6_4:14479523-14479542 None:intergenic 35.0%
ATATTGGCATCAGTGAACAT+TGG - chr6_4:14479740-14479759 Msa0978440:intron 35.0%
ATCTTTGCTCCGTATAACAT+TGG + chr6_4:14479827-14479846 None:intergenic 35.0%
ATTCTCCAACCATGATCAAA+TGG + chr6_4:14479853-14479872 None:intergenic 35.0%
ATTTGATCATGGTTGGAGAA+TGG - chr6_4:14479852-14479871 Msa0978440:intron 35.0%
GCTTATAACACCAATGTTTC+TGG - chr6_4:14479880-14479899 Msa0978440:intron 35.0%
CAATCTTGTACCAGAAACAT+TGG + chr6_4:14479893-14479912 None:intergenic 35.0%
ACTAGTCAGTATCATCATCT+AGG - chr6_4:14479955-14479974 Msa0978440:intron 35.0%
AAACCATCCTATTAATGACC+TGG + chr6_4:14480134-14480153 None:intergenic 35.0%
TTAATAGGATGGTTTCATGC+CGG - chr6_4:14480139-14480158 Msa0978440:CDS 35.0%
! CGTGTGTTTAATGGTTCTAT+CGG + chr6_4:14480266-14480285 None:intergenic 35.0%
TGAGACTTTCGTGTGTTTAA+TGG + chr6_4:14480275-14480294 None:intergenic 35.0%
! ATTTTTCATATGCAGCATGC+AGG - chr6_4:14480367-14480386 Msa0978440:intron 35.0%
TTCTTGATCTACATACTTGG+TGG - chr6_4:14480472-14480491 Msa0978440:intron 35.0%
GGTTTCATATTATGCAACCT+TGG - chr6_4:14481040-14481059 Msa0978440:intron 35.0%
CATACATACCACTCATCAAT+TGG + chr6_4:14481067-14481086 None:intergenic 35.0%
CAATTGATGAGTGGTATGTA+TGG - chr6_4:14481065-14481084 Msa0978440:intron 35.0%
ATTCATTTGTAGGTCACACT+CGG - chr6_4:14481196-14481215 Msa0978440:intron 35.0%
TTCCAAAGGAGGCTTATAAG+AGG - chr6_4:14477568-14477587 Msa0978440:three_prime_UTR 40.0%
TACCTCTTATAAGCCTCCTT+TGG + chr6_4:14477573-14477592 None:intergenic 40.0%
AGCCCATAACAAACTTGAAC+AGG - chr6_4:14477667-14477686 Msa0978440:three_prime_UTR 40.0%
GTAGGTCCAGTATTGTACTT+TGG - chr6_4:14477689-14477708 Msa0978440:CDS 40.0%
!! CTGAACACGTATTTTTGTCG+CGG + chr6_4:14478419-14478438 None:intergenic 40.0%
TCTTAGTTTCTTCTCAGCAG+AGG + chr6_4:14478458-14478477 None:intergenic 40.0%
TGTTTCCGATGCATCAAATG+AGG - chr6_4:14478525-14478544 Msa0978440:intron 40.0%
CATCACCTCATTTGATGCAT+CGG + chr6_4:14478533-14478552 None:intergenic 40.0%
ATGAATGTGCACCAAGGAAA+TGG - chr6_4:14478550-14478569 Msa0978440:intron 40.0%
GAGTCTCTTGATGAGTATCT+TGG - chr6_4:14478598-14478617 Msa0978440:intron 40.0%
GGATATTTGCGTTTAGTGGA+TGG - chr6_4:14478706-14478725 Msa0978440:CDS 40.0%
AAGATGCCACAAGAGATTCT+TGG + chr6_4:14478950-14478969 None:intergenic 40.0%
! AGAAGAATCCAAGGTGTTAG+TGG - chr6_4:14479071-14479090 Msa0978440:intron 40.0%
GACTTACATGAGGTAAAGAC+TGG + chr6_4:14479141-14479160 None:intergenic 40.0%
ACAGGAATTTATGACAGGTC+AGG + chr6_4:14479163-14479182 None:intergenic 40.0%
CACTGACATGTTATTAGGAC+AGG - chr6_4:14479298-14479317 Msa0978440:CDS 40.0%
CTAGTGAGCTGACATTGATA+TGG + chr6_4:14479342-14479361 None:intergenic 40.0%
CATATCAATGTCAGCTCACT+AGG - chr6_4:14479340-14479359 Msa0978440:CDS 40.0%
! AAAATTAGTCTCCGGTGTGA+TGG - chr6_4:14479470-14479489 Msa0978440:intron 40.0%
GACAGACGGTTACAATTATG+AGG - chr6_4:14479624-14479643 Msa0978440:intron 40.0%
TGTTGTTATATCTGGTGCAG+AGG - chr6_4:14479716-14479735 Msa0978440:intron 40.0%
! TATCTGGTGCAGAGGTATAT+TGG - chr6_4:14479724-14479743 Msa0978440:intron 40.0%
GTTCAATCGAATGAACCGAT+CGG + chr6_4:14480105-14480124 None:intergenic 40.0%
ATTCGATTGAACCAAGAACC+AGG - chr6_4:14480113-14480132 Msa0978440:CDS 40.0%
! CCTATTAATGACCTGGTTCT+TGG + chr6_4:14480127-14480146 None:intergenic 40.0%
CCAAGAACCAGGTCATTAAT+AGG - chr6_4:14480124-14480143 Msa0978440:CDS 40.0%
GAACCAGGTCATTAATAGGA+TGG - chr6_4:14480128-14480147 Msa0978440:CDS 40.0%
TAAACACACGAAAGTCTCAC+CGG - chr6_4:14480276-14480295 Msa0978440:intron 40.0%
GCATGCAGGAATATTTCACA+TGG - chr6_4:14480381-14480400 Msa0978440:intron 40.0%
TTGAGGCCCAAATGATACAA+GGG + chr6_4:14480422-14480441 None:intergenic 40.0%
! TACATACTTGGTGGAGTTTC+TGG - chr6_4:14480481-14480500 Msa0978440:intron 40.0%
!! CATTTGCAATACTTGGTGCT+TGG - chr6_4:14480930-14480949 Msa0978440:intron 40.0%
TTCATTTGTAGGTCACACTC+GGG - chr6_4:14481197-14481216 Msa0978440:intron 40.0%
AGAAGGAACTTATCAACCCA+TGG - chr6_4:14481577-14481596 Msa0978440:five_prime_UTR 40.0%
GAGCTGCAATGTCCTTATTC+TGG + chr6_4:14478002-14478021 None:intergenic 45.0%
CCATATCAATGCCATCACAC+CGG + chr6_4:14479484-14479503 None:intergenic 45.0%
!! CGGTGTGATGGCATTGATAT+GGG - chr6_4:14479482-14479501 Msa0978440:intron 45.0%
TGATCATGGTTGGAGAATGG+TGG - chr6_4:14479855-14479874 Msa0978440:intron 45.0%
ATCGAATGAACCGATCGGTT+TGG + chr6_4:14480100-14480119 None:intergenic 45.0%
GGTTGAACTAGAGTTAGGCA+TGG - chr6_4:14480176-14480195 Msa0978440:CDS 45.0%
!! TTCACATGGCTCTGAGTTGT+TGG - chr6_4:14480395-14480414 Msa0978440:intron 45.0%
!! TCACATGGCTCTGAGTTGTT+GGG - chr6_4:14480396-14480415 Msa0978440:intron 45.0%
TGTTGGGCCCTTGTATCATT+TGG - chr6_4:14480412-14480431 Msa0978440:intron 45.0%
GTTGGGCCCTTGTATCATTT+GGG - chr6_4:14480413-14480432 Msa0978440:intron 45.0%
CTTGAGGCCCAAATGATACA+AGG + chr6_4:14480423-14480442 None:intergenic 45.0%
TTTGGGCCTCAAGTTTGCAA+AGG - chr6_4:14480430-14480449 Msa0978440:intron 45.0%
CCATAGCCTTTGCAAACTTG+AGG + chr6_4:14480439-14480458 None:intergenic 45.0%
CCTCAAGTTTGCAAAGGCTA+TGG - chr6_4:14480436-14480455 Msa0978440:intron 45.0%
CATACACCAGATCCAACTGT+TGG - chr6_4:14480523-14480542 Msa0978440:intron 45.0%
! CTCAGCCGTCAATTTGAGAT+AGG - chr6_4:14480631-14480650 Msa0978440:CDS 45.0%
GCTCGCCTATCTCAAATTGA+CGG + chr6_4:14480639-14480658 None:intergenic 45.0%
GGACCTGCATTTGCAATACT+TGG - chr6_4:14480923-14480942 Msa0978440:intron 45.0%
! GCACCAAGTATTGCAAATGC+AGG + chr6_4:14480929-14480948 None:intergenic 45.0%
ACCTTGGTCCAATTGATGAG+TGG - chr6_4:14481056-14481075 Msa0978440:intron 45.0%
ACCACTCATCAATTGGACCA+AGG + chr6_4:14481060-14481079 None:intergenic 45.0%
AAGTTTGAGTCCTTCTCCAC+CGG + chr6_4:14481297-14481316 None:intergenic 45.0%
AGATGCCAATGCATTGAGAG+GGG + chr6_4:14481408-14481427 None:intergenic 45.0%
CAGATGCCAATGCATTGAGA+GGG + chr6_4:14481409-14481428 None:intergenic 45.0%
ACAGATGCCAATGCATTGAG+AGG + chr6_4:14481410-14481429 None:intergenic 45.0%
TGAAGTAGCTGTTGTAGCCT+TGG - chr6_4:14481433-14481452 Msa0978440:five_prime_UTR 45.0%
GGAACTTATCAACCCATGGT+TGG - chr6_4:14481581-14481600 Msa0978440:five_prime_UTR 45.0%
!!! TAAAAATTTTATTACATTTA+AGG + chr6_4:14480792-14480811 None:intergenic 5.0%
!! AAAATGTAAATATTTATTAT+TGG - chr6_4:14481171-14481190 Msa0978440:intron 5.0%
GAGGTGATGAATGTGCACCA+AGG - chr6_4:14478544-14478563 Msa0978440:intron 50.0%
GACAGGTCAGGACTTACATG+AGG + chr6_4:14479151-14479170 None:intergenic 50.0%
!! CCGGTGTGATGGCATTGATA+TGG - chr6_4:14479481-14479500 Msa0978440:intron 50.0%
! GCATTGATATGGGATCGACG+TGG - chr6_4:14479492-14479511 Msa0978440:intron 50.0%
TTGATATGGGATCGACGTGG+AGG - chr6_4:14479495-14479514 Msa0978440:intron 50.0%
! AGGAGCCTTATAGTGTCCGA+TGG - chr6_4:14479515-14479534 Msa0978440:intron 50.0%
TCATGGTTGGAGAATGGTGG+AGG - chr6_4:14479858-14479877 Msa0978440:intron 50.0%
! CATGCCGGTTACATTGTGCT+CGG - chr6_4:14480154-14480173 Msa0978440:CDS 50.0%
! ATGCCGGTTACATTGTGCTC+GGG - chr6_4:14480155-14480174 Msa0978440:CDS 50.0%
CAACCCGAGCACAATGTAAC+CGG + chr6_4:14480161-14480180 None:intergenic 50.0%
!! GCTCGGGTTGAACTAGAGTT+AGG - chr6_4:14480171-14480190 Msa0978440:CDS 50.0%
ACACCAGATCCAACTGTTGG+TGG - chr6_4:14480526-14480545 Msa0978440:intron 50.0%
AACTAGTTCGGCTCTTCAGC+TGG - chr6_4:14481253-14481272 Msa0978440:intron 50.0%
GACAAGACATCACCAGGAAC+CGG - chr6_4:14481275-14481294 Msa0978440:intron 50.0%
GAGGGGGATCCATAAGCAAA+AGG + chr6_4:14481391-14481410 None:intergenic 50.0%
GATGCCAATGCATTGAGAGG+GGG + chr6_4:14481407-14481426 None:intergenic 50.0%
TCCACTCTTGTCGGCAGTGA+CGG - chr6_4:14479198-14479217 Msa0978440:intron 55.0%
GTGCCACCAACAGTTGGATC+TGG + chr6_4:14480532-14480551 None:intergenic 55.0%
!! CTTACGGTGCCACCAACAGT+TGG + chr6_4:14480538-14480557 None:intergenic 55.0%
ACACTCGGGAGCAGCTTTCA+CGG - chr6_4:14481211-14481230 Msa0978440:intron 55.0%
GCTTTCACGGGCATGGCATA+TGG - chr6_4:14481224-14481243 Msa0978440:intron 55.0%
CAGCTGGACAAGACATCACC+AGG - chr6_4:14481269-14481288 Msa0978440:intron 55.0%
AAGACATCACCAGGAACCGG+TGG - chr6_4:14481278-14481297 Msa0978440:intron 55.0%
GGATCCCCCTCTCAATGCAT+TGG - chr6_4:14481400-14481419 Msa0978440:intron 55.0%
TCCGTCACTGCCGACAAGAG+TGG + chr6_4:14479202-14479221 None:intergenic 60.0%
CACTCGGGAGCAGCTTTCAC+GGG - chr6_4:14481212-14481231 Msa0978440:intron 60.0%
TCACCAGGAACCGGTGGAGA+AGG - chr6_4:14481284-14481303 Msa0978440:intron 60.0%
!! AGTCCTTCTCCACCGGTTCC+TGG + chr6_4:14481290-14481309 None:intergenic 60.0%
GGGAGCAGCTTTCACGGGCA+TGG - chr6_4:14481217-14481236 Msa0978440:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 14477521 14481646 14477521 ID=Msa0978440;Name=Msa0978440
chr6_4 mRNA 14477521 14481646 14477521 ID=Msa0978440-mRNA-1;Parent=Msa0978440;Name=Msa0978440-mRNA-1;_AED=0.24;_eAED=0.24;_QI=249|1|1|1|0.83|0.71|7|168|424
chr6_4 exon 14477521 14477959 14477521 ID=Msa0978440-mRNA-1:exon:4725;Parent=Msa0978440-mRNA-1
chr6_4 exon 14478090 14478244 14478090 ID=Msa0978440-mRNA-1:exon:4724;Parent=Msa0978440-mRNA-1
chr6_4 exon 14478615 14478785 14478615 ID=Msa0978440-mRNA-1:exon:4723;Parent=Msa0978440-mRNA-1
chr6_4 exon 14479266 14479431 14479266 ID=Msa0978440-mRNA-1:exon:4722;Parent=Msa0978440-mRNA-1
chr6_4 exon 14480014 14480227 14480014 ID=Msa0978440-mRNA-1:exon:4721;Parent=Msa0978440-mRNA-1
chr6_4 exon 14480533 14480836 14480533 ID=Msa0978440-mRNA-1:exon:4720;Parent=Msa0978440-mRNA-1
chr6_4 exon 14481404 14481646 14481404 ID=Msa0978440-mRNA-1:exon:4719;Parent=Msa0978440-mRNA-1
chr6_4 five_prime_UTR 14481404 14481646 14481404 ID=Msa0978440-mRNA-1:five_prime_utr;Parent=Msa0978440-mRNA-1
chr6_4 five_prime_UTR 14480831 14480836 14480831 ID=Msa0978440-mRNA-1:five_prime_utr;Parent=Msa0978440-mRNA-1
chr6_4 CDS 14480533 14480830 14480533 ID=Msa0978440-mRNA-1:cds;Parent=Msa0978440-mRNA-1
chr6_4 CDS 14480014 14480227 14480014 ID=Msa0978440-mRNA-1:cds;Parent=Msa0978440-mRNA-1
chr6_4 CDS 14479266 14479431 14479266 ID=Msa0978440-mRNA-1:cds;Parent=Msa0978440-mRNA-1
chr6_4 CDS 14478615 14478785 14478615 ID=Msa0978440-mRNA-1:cds;Parent=Msa0978440-mRNA-1
chr6_4 CDS 14478090 14478244 14478090 ID=Msa0978440-mRNA-1:cds;Parent=Msa0978440-mRNA-1
chr6_4 CDS 14477689 14477959 14477689 ID=Msa0978440-mRNA-1:cds;Parent=Msa0978440-mRNA-1
chr6_4 three_prime_UTR 14477521 14477688 14477521 ID=Msa0978440-mRNA-1:three_prime_utr;Parent=Msa0978440-mRNA-1
Gene Sequence

>Msa0978440

ATGGCTGCATTTTCAGTATGTTACAGAACACCTTACAAGAACACATGCATAATTCTTGGCAGAGATTCTCTGTACAAGACCGCGACAAAAATACGTGTTCAGTGTTCATCAGAGTCTACCTCTGCTGAGAAGAAACTAAGATCATTAGATTCTTATTTTGGAAAACTACAACATAATACAAAATTACATGTTTCCGATGCATCAAATGAGGTGATGAATGTGCACCAAGGAAATGGTCAATCTGAATCAAAACATGAACTTGAGTCTCTTGATGAGTATCTTGGCAAAGTAAATAAAGGCATAAACCAAGAATCTCTTGTGGCATCTTATGTTGAAAATTCTAAGGATGAAAGTTTAGCTCCAAAACAAATTATCAGCCAAGATACTCAAAGAACAAATTTTAGGAAACCAAATACTTATGTCAATATAAGAAGAATCCAAGGTGTTAGTGGTTCAATATCTGCTATAGATTCAAATGATCAGCTAAACAATACATCCAGTCTTTACCTCATAGGTATATTGGCATCAGTGAACATTGGAGTGTTTCTATTTGAAATAGCAAGTCCTATAAGGAATGATAACTTAGAGCTGTTTTCACTTCCAATGTTATACGGAGCAAAGATAAACCATTTGATCATGGTTGGAGAATGGTGGAGGCTTATAACACCAATGTTTCTGCATGCAGGAATATTTCACATGGCTCTGAGTTGTTGGGCCCTTGTATCATTTGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCTTGATCTACATACTTGGTGGAGTTTCTGGCAACTTTGCAAGTTTTCTACATACACCAGATCCAACTGTTGGTGGCACCGGACCTGCATTTGCAATACTTGGTGCTTGGCTCATGTACCAAATTCAAAATAGAGATGTCATTGAAAATCATGATTCTGACAATCTATTCAAGAAGGCAATAATTATTACAGCTCTTGGTTTCATATTATGCAACCTTGGTCCAATTGATGAGTGGTCACACTCGGGAGCAGCTTTCACGGGCATGGCATATGGCTTTCTAACTAGTTCGGCTCTTCAGCTGGACAAGACATCACCAGGAACCGGTGGAGAAGGACTCAAACTTGTTAGAAAATACGGTGCTTCATGCAAATCACTTGCTATCTTCGCCATATTCGTCGTTGTTTTAAGTTCATTCCTTTTGCTTATGGATCCCCCTCTCAATGCATTGGCATCTGTTGATGAAGTAGCTGTTGTAGCCTTGGAGTATATGTCAATACTTTGTTGA

Protein sequence

>Msa0978440

MAAFSVCYRTPYKNTCIILGRDSLYKTATKIRVQCSSESTSAEKKLRSLDSYFGKLQHNTKLHVSDASNEVMNVHQGNGQSESKHELESLDEYLGKVNKGINQESLVASYVENSKDESLAPKQIISQDTQRTNFRKPNTYVNIRRIQGVSGSISAIDSNDQLNNTSSLYLIGILASVNIGVFLFEIASPIRNDNLELFSLPMLYGAKINHLIMVGEWWRLITPMFLHAGIFHMALSCWALVSFGPQVCKGYGSFTFFLIYILGGVSGNFASFLHTPDPTVGGTGPAFAILGAWLMYQIQNRDVIENHDSDNLFKKAIIITALGFILCNLGPIDEWSHSGAAFTGMAYGFLTSSALQLDKTSPGTGGEGLKLVRKYGASCKSLAIFAIFVVVLSSFLLLMDPPLNALASVDEVAVVALEYMSILC*