AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0156780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156780 MtrunA17_Chr1g0168471 96.850 127 4 0 1 127 1 127 3.12e-89 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0156780 AT2G05620.2 75.940 133 23 4 2 127 3 133 9.08e-66 196
Msa0156780 AT2G05620.1 75.940 133 23 4 2 127 3 133 9.08e-66 196

Find 51 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCAATGGTTCACATAAA+AGG 0.199695 1_4:+23459673 None:intergenic
ATCTTTCCTTGATTCCTCTT+TGG 0.239274 1_4:-23459628 Msa0156780:three_prime_UTR
AAACGTTTCAATCAGCTTAG+AGG 0.319386 1_4:-23461211 Msa0156780:CDS
TATGTGAATGTAAAAGAAAA+AGG 0.334628 1_4:+23461491 None:intergenic
TCATTAACATTCTTCATCAT+AGG 0.355579 1_4:+23461289 None:intergenic
AAACATCATAGTAAACAAAA+TGG 0.374163 1_4:-23461461 Msa0156780:exon
ACCAGTGGTTTAGATGTATT+AGG 0.380542 1_4:+23461618 None:intergenic
GCCACATCAATTTCTGCAAC+AGG 0.383234 1_4:-23461439 Msa0156780:CDS
ACTGAATTCTGCAAATCAAT+AGG 0.397917 1_4:-23460034 Msa0156780:CDS
AACAGAGACAAGGGCTGATT+AGG 0.411490 1_4:-23460000 Msa0156780:CDS
TGTGTTGGTTCATCATTCTA+TGG 0.416628 1_4:-23461415 Msa0156780:CDS
GCTTCAATGCATGGTTGTAA+TGG 0.427377 1_4:+23461544 None:intergenic
TTACGAGTAACCACAACAAT+TGG 0.430918 1_4:+23461247 None:intergenic
AGCCATTGCTTTACACTCTC+AGG 0.432190 1_4:-23461185 Msa0156780:intron
ATGAAACGTTATAAAACTTA+AGG 0.437259 1_4:-23459764 Msa0156780:three_prime_UTR
GTTCATCATTCTATGGAAGC+TGG 0.445752 1_4:-23461408 Msa0156780:CDS
GTTTCTTCGCAAGTTCGTAT+TGG 0.470806 1_4:-23461340 Msa0156780:CDS
GTGGTTACTCGTAATATTGT+TGG 0.474864 1_4:-23461238 Msa0156780:CDS
TAATATTTGTATGTGAAGGA+AGG 0.478965 1_4:+23461571 None:intergenic
ATCATAGGTTGCAACCTCAC+TGG 0.491055 1_4:+23461304 None:intergenic
TTCATCATTCTATGGAAGCT+GGG 0.491238 1_4:-23461407 Msa0156780:CDS
ATTAGGTTGGCTAAGAAGAA+TGG 0.501313 1_4:-23459983 Msa0156780:CDS
ATGATGAAGAATGTTAATGA+AGG 0.502442 1_4:-23461286 Msa0156780:CDS
AAAAGATTAGCTTCAATGCA+TGG 0.504944 1_4:+23461535 None:intergenic
ATGGTTCACATAAAAGGCTA+TGG 0.508728 1_4:+23459679 None:intergenic
GACATTGTAATTACAAAATG+TGG 0.509248 1_4:+23459918 None:intergenic
TCCTAATACATCTAAACCAC+TGG 0.519171 1_4:-23461619 Msa0156780:five_prime_UTR
ATTTCTGCAACAGGTTGTGT+TGG 0.519614 1_4:-23461430 Msa0156780:CDS
AGCTGGGGAACATCTATAGT+TGG 0.521344 1_4:-23461391 Msa0156780:CDS
TTAACACCAAAGAGGAATCA+AGG 0.525346 1_4:+23459622 None:intergenic
TATATTTGCTCCAATTGTTG+TGG 0.534523 1_4:-23461257 Msa0156780:CDS
AATATTTGTATGTGAAGGAA+GGG 0.541782 1_4:+23461572 None:intergenic
AGAAATAGATCAATGTTACT+TGG 0.544759 1_4:-23459728 Msa0156780:three_prime_UTR
AAGAAGAATGGAGAATGGCT+TGG 0.545873 1_4:-23459971 Msa0156780:CDS
TTGACAGCAGAATGTAAACT+AGG 0.551181 1_4:-23459859 Msa0156780:three_prime_UTR
TTTATAATATTTGTATGTGA+AGG 0.558690 1_4:+23461567 None:intergenic
AAGAATGTTAATGAAGGGAA+AGG 0.566696 1_4:-23461280 Msa0156780:CDS
GGTGTAAATTGGAGAACCAG+TGG 0.587293 1_4:+23461603 None:intergenic
GAGACAAGGGCTGATTAGGT+TGG 0.587941 1_4:-23459996 Msa0156780:CDS
TGGTGAAGATTACAGCATGT+TGG 0.600796 1_4:-23461371 Msa0156780:CDS
TGGCTAAGAAGAATGGAGAA+TGG 0.601122 1_4:-23459976 Msa0156780:CDS
TGATGAAGAATGTTAATGAA+GGG 0.601637 1_4:-23461285 Msa0156780:CDS
CACCTGAGAGTGTAAAGCAA+TGG 0.607087 1_4:+23461183 None:intergenic
TCATCATTCTATGGAAGCTG+GGG 0.629743 1_4:-23461406 Msa0156780:CDS
GCAGATGCAAAACAGAGACA+AGG 0.641927 1_4:-23460010 Msa0156780:CDS
CATGAGGGTTAACACCAAAG+AGG 0.643347 1_4:+23459614 None:intergenic
AACTCTCGATTATCACATGA+GGG 0.643574 1_4:+23459599 None:intergenic
CAGATGCAAAACAGAGACAA+GGG 0.659781 1_4:-23460009 Msa0156780:CDS
GAAGAGTTAGTAAGCCAGTG+AGG 0.661265 1_4:-23461318 Msa0156780:CDS
ACCTGTTGCAGAAATTGATG+TGG 0.685676 1_4:+23461438 None:intergenic
GAACTCTCGATTATCACATG+AGG 0.690694 1_4:+23459598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACTTATTTAAAAAATTTG+TGG - chr1_4:23460327-23460346 Msa0156780:intron 10.0%
!! TACTTATTTAAAAAATTTGT+GGG - chr1_4:23460328-23460347 Msa0156780:intron 10.0%
!! TTACTTATTTAAAAAATTTG+TGG - chr1_4:23460327-23460346 Msa0156780:intron 10.0%
!! TACTTATTTAAAAAATTTGT+GGG - chr1_4:23460328-23460347 Msa0156780:intron 10.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_4:23459673-23459692 None:intergenic 15.0%
!!! CTTTTGAGATTTTATTTTTT+AGG - chr1_4:23460142-23460161 Msa0156780:intron 15.0%
!!! ATATAAACTTTTTTCATCAA+TGG + chr1_4:23461580-23461599 None:intergenic 15.0%
!! TTTATAATATTTGTATGTGA+AGG + chr1_4:23459673-23459692 None:intergenic 15.0%
!!! CTTTTGAGATTTTATTTTTT+AGG - chr1_4:23460142-23460161 Msa0156780:intron 15.0%
!!! ATATAAACTTTTTTCATCAA+TGG + chr1_4:23461580-23461599 None:intergenic 15.0%
!! TATGTGAATGTAAAAGAAAA+AGG + chr1_4:23459749-23459768 None:intergenic 20.0%
!! AAACATCATAGTAAACAAAA+TGG - chr1_4:23459776-23459795 Msa0156780:three_prime_UTR 20.0%
!! GAAATTTATTGTTACAACTT+AGG - chr1_4:23460170-23460189 Msa0156780:intron 20.0%
!! TTATATGATTCTCTTGAATT+AGG - chr1_4:23460204-23460223 Msa0156780:intron 20.0%
!! TTCAAGTACAATATATCAAA+AGG - chr1_4:23460286-23460305 Msa0156780:intron 20.0%
!! TCAAGTACAATATATCAAAA+GGG - chr1_4:23460287-23460306 Msa0156780:intron 20.0%
!! TTGTTAATTAAAGTGATACT+AGG - chr1_4:23460364-23460383 Msa0156780:intron 20.0%
!! ATTCAAAAAAACACATTTCT+AGG - chr1_4:23460470-23460489 Msa0156780:intron 20.0%
!! TTCAAAAAAACACATTTCTA+GGG - chr1_4:23460471-23460490 Msa0156780:intron 20.0%
!! TAAAACTAAAGAATTTGAGA+TGG - chr1_4:23460512-23460531 Msa0156780:intron 20.0%
!!! TAGTTTATAGTTGATATTTG+CGG - chr1_4:23460571-23460590 Msa0156780:intron 20.0%
!! ATTTGTGTGAATAAAATTGA+TGG - chr1_4:23461121-23461140 Msa0156780:intron 20.0%
!!! TTTCATATTTTGAAATCTGT+AGG - chr1_4:23461175-23461194 Msa0156780:intron 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_4:23461348-23461367 Msa0156780:CDS 20.0%
!! ATGAAACGTTATAAAACTTA+AGG - chr1_4:23461473-23461492 Msa0156780:five_prime_UTR 20.0%
!! TATGTGAATGTAAAAGAAAA+AGG + chr1_4:23459749-23459768 None:intergenic 20.0%
!! AAACATCATAGTAAACAAAA+TGG - chr1_4:23459776-23459795 Msa0156780:three_prime_UTR 20.0%
!! GAAATTTATTGTTACAACTT+AGG - chr1_4:23460170-23460189 Msa0156780:intron 20.0%
!! TTATATGATTCTCTTGAATT+AGG - chr1_4:23460204-23460223 Msa0156780:intron 20.0%
!! TTCAAGTACAATATATCAAA+AGG - chr1_4:23460286-23460305 Msa0156780:intron 20.0%
!! TCAAGTACAATATATCAAAA+GGG - chr1_4:23460287-23460306 Msa0156780:intron 20.0%
!! TTGTTAATTAAAGTGATACT+AGG - chr1_4:23460364-23460383 Msa0156780:intron 20.0%
!! ATTCAAAAAAACACATTTCT+AGG - chr1_4:23460470-23460489 Msa0156780:intron 20.0%
!! TTCAAAAAAACACATTTCTA+GGG - chr1_4:23460471-23460490 Msa0156780:intron 20.0%
!! TAAAACTAAAGAATTTGAGA+TGG - chr1_4:23460512-23460531 Msa0156780:intron 20.0%
!!! TAGTTTATAGTTGATATTTG+CGG - chr1_4:23460571-23460590 Msa0156780:intron 20.0%
!! ATTTGTGTGAATAAAATTGA+TGG - chr1_4:23461121-23461140 Msa0156780:intron 20.0%
!!! TTTCATATTTTGAAATCTGT+AGG - chr1_4:23461175-23461194 Msa0156780:intron 20.0%
!! TTTCATGTTTAAAAACTTGA+TGG - chr1_4:23461348-23461367 Msa0156780:CDS 20.0%
!! ATGAAACGTTATAAAACTTA+AGG - chr1_4:23461473-23461492 Msa0156780:five_prime_UTR 20.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_4:23459668-23459687 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_4:23459669-23459688 None:intergenic 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_4:23459951-23459970 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_4:23459951-23459970 Msa0156780:exon 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_4:23459952-23459971 Msa0156780:exon 25.0%
! GGATTATATGTTTCAATGTT+TGG - chr1_4:23460225-23460244 Msa0156780:intron 25.0%
! TGATGAAATATGTTGAAAAG+AGG - chr1_4:23460263-23460282 Msa0156780:intron 25.0%
!!! AAACCAAATTTTTTCTCTCA+AGG - chr1_4:23460388-23460407 Msa0156780:intron 25.0%
! TAACCTTGAGAGAAAAAATT+TGG + chr1_4:23460394-23460413 None:intergenic 25.0%
!!! TTTTTTCTCTCAAGGTTATA+AGG - chr1_4:23460396-23460415 Msa0156780:intron 25.0%
!! TCAAAAAAACACATTTCTAG+GGG - chr1_4:23460472-23460491 Msa0156780:intron 25.0%
!!! ATAATTAGTGCTTTCTAGTT+GGG + chr1_4:23460913-23460932 None:intergenic 25.0%
! TCTAACATATGATAAGAGAT+TGG - chr1_4:23460932-23460951 Msa0156780:intron 25.0%
! CTAACATATGATAAGAGATT+GGG - chr1_4:23460933-23460952 Msa0156780:intron 25.0%
! TAACATATGATAAGAGATTG+GGG - chr1_4:23460934-23460953 Msa0156780:intron 25.0%
! GAATAAAATTGATGGAAGAA+TGG - chr1_4:23461129-23461148 Msa0156780:intron 25.0%
! GACATTGTAATTACAAAATG+TGG + chr1_4:23461322-23461341 None:intergenic 25.0%
! AGAAATAGATCAATGTTACT+TGG - chr1_4:23461509-23461528 Msa0156780:five_prime_UTR 25.0%
! AATATTTGTATGTGAAGGAA+GGG + chr1_4:23459668-23459687 None:intergenic 25.0%
! TAATATTTGTATGTGAAGGA+AGG + chr1_4:23459669-23459688 None:intergenic 25.0%
! TCATTAACATTCTTCATCAT+AGG + chr1_4:23459951-23459970 None:intergenic 25.0%
! ATGATGAAGAATGTTAATGA+AGG - chr1_4:23459951-23459970 Msa0156780:exon 25.0%
! TGATGAAGAATGTTAATGAA+GGG - chr1_4:23459952-23459971 Msa0156780:exon 25.0%
! GGATTATATGTTTCAATGTT+TGG - chr1_4:23460225-23460244 Msa0156780:intron 25.0%
! TGATGAAATATGTTGAAAAG+AGG - chr1_4:23460263-23460282 Msa0156780:intron 25.0%
!!! AAACCAAATTTTTTCTCTCA+AGG - chr1_4:23460388-23460407 Msa0156780:intron 25.0%
! TAACCTTGAGAGAAAAAATT+TGG + chr1_4:23460394-23460413 None:intergenic 25.0%
!!! TTTTTTCTCTCAAGGTTATA+AGG - chr1_4:23460396-23460415 Msa0156780:intron 25.0%
!! TCAAAAAAACACATTTCTAG+GGG - chr1_4:23460472-23460491 Msa0156780:intron 25.0%
!!! ATAATTAGTGCTTTCTAGTT+GGG + chr1_4:23460913-23460932 None:intergenic 25.0%
! TCTAACATATGATAAGAGAT+TGG - chr1_4:23460932-23460951 Msa0156780:intron 25.0%
! CTAACATATGATAAGAGATT+GGG - chr1_4:23460933-23460952 Msa0156780:intron 25.0%
! TAACATATGATAAGAGATTG+GGG - chr1_4:23460934-23460953 Msa0156780:intron 25.0%
! GAATAAAATTGATGGAAGAA+TGG - chr1_4:23461129-23461148 Msa0156780:intron 25.0%
! GACATTGTAATTACAAAATG+TGG + chr1_4:23461322-23461341 None:intergenic 25.0%
! AGAAATAGATCAATGTTACT+TGG - chr1_4:23461509-23461528 Msa0156780:five_prime_UTR 25.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_4:23459648-23459667 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_4:23459705-23459724 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_4:23459957-23459976 Msa0156780:exon 30.0%
TATATTTGCTCCAATTGTTG+TGG - chr1_4:23459980-23459999 Msa0156780:CDS 30.0%
TCAATGTTTGGTTAGATTGA+AGG - chr1_4:23460237-23460256 Msa0156780:intron 30.0%
!!! TTTGAGATGGTTTTGAATCA+AGG - chr1_4:23460525-23460544 Msa0156780:intron 30.0%
TTGATATTTGCGGAGAATTA+TGG - chr1_4:23460581-23460600 Msa0156780:intron 30.0%
TGTGGTTGTTTAAAGATTGA+TGG - chr1_4:23460671-23460690 Msa0156780:intron 30.0%
GTTTAAAGATTGATGGAAGA+TGG - chr1_4:23460678-23460697 Msa0156780:intron 30.0%
!! TAATTAGTGCTTTCTAGTTG+GGG + chr1_4:23460912-23460931 None:intergenic 30.0%
! GATAATTAGTGCTTTCTAGT+TGG + chr1_4:23460914-23460933 None:intergenic 30.0%
GATTTGAACTTCATCTCTTA+AGG + chr1_4:23461039-23461058 None:intergenic 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_4:23461203-23461222 Msa0156780:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_4:23461567-23461586 None:intergenic 30.0%
!!! GGGATATTTTTGGTGTAAAT+TGG + chr1_4:23459648-23459667 None:intergenic 30.0%
!! AAAAGATTAGCTTCAATGCA+TGG + chr1_4:23459705-23459724 None:intergenic 30.0%
AAGAATGTTAATGAAGGGAA+AGG - chr1_4:23459957-23459976 Msa0156780:exon 30.0%
TATATTTGCTCCAATTGTTG+TGG - chr1_4:23459980-23459999 Msa0156780:CDS 30.0%
TCAATGTTTGGTTAGATTGA+AGG - chr1_4:23460237-23460256 Msa0156780:intron 30.0%
!!! TTTGAGATGGTTTTGAATCA+AGG - chr1_4:23460525-23460544 Msa0156780:intron 30.0%
TTGATATTTGCGGAGAATTA+TGG - chr1_4:23460581-23460600 Msa0156780:intron 30.0%
TGTGGTTGTTTAAAGATTGA+TGG - chr1_4:23460671-23460690 Msa0156780:intron 30.0%
GTTTAAAGATTGATGGAAGA+TGG - chr1_4:23460678-23460697 Msa0156780:intron 30.0%
!! TAATTAGTGCTTTCTAGTTG+GGG + chr1_4:23460912-23460931 None:intergenic 30.0%
! GATAATTAGTGCTTTCTAGT+TGG + chr1_4:23460914-23460933 None:intergenic 30.0%
GATTTGAACTTCATCTCTTA+AGG + chr1_4:23461039-23461058 None:intergenic 30.0%
ACTGAATTCTGCAAATCAAT+AGG - chr1_4:23461203-23461222 Msa0156780:CDS 30.0%
TCATCAATGGTTCACATAAA+AGG + chr1_4:23461567-23461586 None:intergenic 30.0%
TCCTAATACATCTAAACCAC+TGG - chr1_4:23459618-23459637 Msa0156780:three_prime_UTR 35.0%
ACCAGTGGTTTAGATGTATT+AGG + chr1_4:23459622-23459641 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_4:23459658-23459677 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_4:23459822-23459841 Msa0156780:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_4:23459830-23459849 Msa0156780:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_4:23459993-23460012 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_4:23459999-23460018 Msa0156780:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_4:23460026-23460045 Msa0156780:CDS 35.0%
TTCAACTCTTACCATTGAGA+TGG - chr1_4:23460419-23460438 Msa0156780:intron 35.0%
AGTTGGGGAAATACTTGATT+GGG + chr1_4:23460897-23460916 None:intergenic 35.0%
TAGTTGGGGAAATACTTGAT+TGG + chr1_4:23460898-23460917 None:intergenic 35.0%
ACGGGATGTTTCAAAATGTT+CGG - chr1_4:23460965-23460984 Msa0156780:intron 35.0%
!! GTCATTAGTGTCACTTTATG+TGG - chr1_4:23461082-23461101 Msa0156780:intron 35.0%
!! ATTAGGTTGGCTAAGAAGAA+TGG - chr1_4:23461254-23461273 Msa0156780:CDS 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_4:23461378-23461397 Msa0156780:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_4:23461561-23461580 None:intergenic 35.0%
ATCTTTCCTTGATTCCTCTT+TGG - chr1_4:23461609-23461628 Msa0156780:five_prime_UTR 35.0%
TTAACACCAAAGAGGAATCA+AGG + chr1_4:23461618-23461637 None:intergenic 35.0%
TCCTAATACATCTAAACCAC+TGG - chr1_4:23459618-23459637 Msa0156780:three_prime_UTR 35.0%
ACCAGTGGTTTAGATGTATT+AGG + chr1_4:23459622-23459641 None:intergenic 35.0%
! TGTGAAGGAAGGGATATTTT+TGG + chr1_4:23459658-23459677 None:intergenic 35.0%
!! TGTGTTGGTTCATCATTCTA+TGG - chr1_4:23459822-23459841 Msa0156780:three_prime_UTR 35.0%
TTCATCATTCTATGGAAGCT+GGG - chr1_4:23459830-23459849 Msa0156780:three_prime_UTR 35.0%
TTACGAGTAACCACAACAAT+TGG + chr1_4:23459993-23460012 None:intergenic 35.0%
GTGGTTACTCGTAATATTGT+TGG - chr1_4:23459999-23460018 Msa0156780:CDS 35.0%
AAACGTTTCAATCAGCTTAG+AGG - chr1_4:23460026-23460045 Msa0156780:CDS 35.0%
TTCAACTCTTACCATTGAGA+TGG - chr1_4:23460419-23460438 Msa0156780:intron 35.0%
AGTTGGGGAAATACTTGATT+GGG + chr1_4:23460897-23460916 None:intergenic 35.0%
TAGTTGGGGAAATACTTGAT+TGG + chr1_4:23460898-23460917 None:intergenic 35.0%
ACGGGATGTTTCAAAATGTT+CGG - chr1_4:23460965-23460984 Msa0156780:intron 35.0%
!! GTCATTAGTGTCACTTTATG+TGG - chr1_4:23461082-23461101 Msa0156780:intron 35.0%
!! ATTAGGTTGGCTAAGAAGAA+TGG - chr1_4:23461254-23461273 Msa0156780:CDS 35.0%
TTGACAGCAGAATGTAAACT+AGG - chr1_4:23461378-23461397 Msa0156780:CDS 35.0%
ATGGTTCACATAAAAGGCTA+TGG + chr1_4:23461561-23461580 None:intergenic 35.0%
ATCTTTCCTTGATTCCTCTT+TGG - chr1_4:23461609-23461628 Msa0156780:five_prime_UTR 35.0%
TTAACACCAAAGAGGAATCA+AGG + chr1_4:23461618-23461637 None:intergenic 35.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_4:23459696-23459715 None:intergenic 40.0%
ACCTGTTGCAGAAATTGATG+TGG + chr1_4:23459802-23459821 None:intergenic 40.0%
ATTTCTGCAACAGGTTGTGT+TGG - chr1_4:23459807-23459826 Msa0156780:three_prime_UTR 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_4:23459829-23459848 Msa0156780:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_4:23459831-23459850 Msa0156780:three_prime_UTR 40.0%
TGGTGAAGATTACAGCATGT+TGG - chr1_4:23459866-23459885 Msa0156780:three_prime_UTR 40.0%
GTTTCTTCGCAAGTTCGTAT+TGG - chr1_4:23459897-23459916 Msa0156780:three_prime_UTR 40.0%
TCTATGAGATGCCATCTCAA+TGG + chr1_4:23460433-23460452 None:intergenic 40.0%
TTGAGATGGCATCTCATAGA+TGG - chr1_4:23460433-23460452 Msa0156780:intron 40.0%
!!! ATGGTTTTGAATCAAGGACG+TGG - chr1_4:23460531-23460550 Msa0156780:intron 40.0%
CAAGGACGTGGTAATATTCA+TGG - chr1_4:23460543-23460562 Msa0156780:intron 40.0%
CTGCAATTATTGTCGTGTTG+CGG - chr1_4:23460614-23460633 Msa0156780:intron 40.0%
ACCTTGATGTCTCTTGTATG+TGG - chr1_4:23460653-23460672 Msa0156780:intron 40.0%
ACCACATACAAGAGACATCA+AGG + chr1_4:23460657-23460676 None:intergenic 40.0%
GCAAGACTTTCTCTTCTAGT+TGG + chr1_4:23460739-23460758 None:intergenic 40.0%
CTAGAAGAGAAAGTCTTGCT+TGG - chr1_4:23460740-23460759 Msa0156780:intron 40.0%
!! ACTTTTTGAGCACACCACTT+AGG - chr1_4:23460768-23460787 Msa0156780:intron 40.0%
TTTGTGTGTGAATGCCTAAG+TGG + chr1_4:23460785-23460804 None:intergenic 40.0%
AGTTCAAATCACCTCAGAGA+TGG - chr1_4:23461049-23461068 Msa0156780:intron 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_4:23461228-23461247 Msa0156780:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_4:23461261-23461280 Msa0156780:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_4:23461266-23461285 Msa0156780:CDS 40.0%
GCTTCAATGCATGGTTGTAA+TGG + chr1_4:23459696-23459715 None:intergenic 40.0%
ACCTGTTGCAGAAATTGATG+TGG + chr1_4:23459802-23459821 None:intergenic 40.0%
ATTTCTGCAACAGGTTGTGT+TGG - chr1_4:23459807-23459826 Msa0156780:three_prime_UTR 40.0%
GTTCATCATTCTATGGAAGC+TGG - chr1_4:23459829-23459848 Msa0156780:three_prime_UTR 40.0%
TCATCATTCTATGGAAGCTG+GGG - chr1_4:23459831-23459850 Msa0156780:three_prime_UTR 40.0%
TGGTGAAGATTACAGCATGT+TGG - chr1_4:23459866-23459885 Msa0156780:three_prime_UTR 40.0%
GTTTCTTCGCAAGTTCGTAT+TGG - chr1_4:23459897-23459916 Msa0156780:three_prime_UTR 40.0%
TCTATGAGATGCCATCTCAA+TGG + chr1_4:23460433-23460452 None:intergenic 40.0%
TTGAGATGGCATCTCATAGA+TGG - chr1_4:23460433-23460452 Msa0156780:intron 40.0%
!!! ATGGTTTTGAATCAAGGACG+TGG - chr1_4:23460531-23460550 Msa0156780:intron 40.0%
CAAGGACGTGGTAATATTCA+TGG - chr1_4:23460543-23460562 Msa0156780:intron 40.0%
CTGCAATTATTGTCGTGTTG+CGG - chr1_4:23460614-23460633 Msa0156780:intron 40.0%
ACCTTGATGTCTCTTGTATG+TGG - chr1_4:23460653-23460672 Msa0156780:intron 40.0%
ACCACATACAAGAGACATCA+AGG + chr1_4:23460657-23460676 None:intergenic 40.0%
GCAAGACTTTCTCTTCTAGT+TGG + chr1_4:23460739-23460758 None:intergenic 40.0%
CTAGAAGAGAAAGTCTTGCT+TGG - chr1_4:23460740-23460759 Msa0156780:intron 40.0%
!! ACTTTTTGAGCACACCACTT+AGG - chr1_4:23460768-23460787 Msa0156780:intron 40.0%
TTTGTGTGTGAATGCCTAAG+TGG + chr1_4:23460785-23460804 None:intergenic 40.0%
AGTTCAAATCACCTCAGAGA+TGG - chr1_4:23461049-23461068 Msa0156780:intron 40.0%
CAGATGCAAAACAGAGACAA+GGG - chr1_4:23461228-23461247 Msa0156780:CDS 40.0%
TGGCTAAGAAGAATGGAGAA+TGG - chr1_4:23461261-23461280 Msa0156780:CDS 40.0%
AAGAAGAATGGAGAATGGCT+TGG - chr1_4:23461266-23461285 Msa0156780:CDS 40.0%
GGTGTAAATTGGAGAACCAG+TGG + chr1_4:23459637-23459656 None:intergenic 45.0%
GCCACATCAATTTCTGCAAC+AGG - chr1_4:23459798-23459817 Msa0156780:three_prime_UTR 45.0%
AGCTGGGGAACATCTATAGT+TGG - chr1_4:23459846-23459865 Msa0156780:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_4:23459919-23459938 Msa0156780:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_4:23459936-23459955 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_4:23460052-23460071 Msa0156780:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_4:23460057-23460076 None:intergenic 45.0%
AGATGGCATCTCATAGATGG+AGG - chr1_4:23460436-23460455 Msa0156780:intron 45.0%
!! TTTCTAGGGGTGTTGAGACA+TGG - chr1_4:23460485-23460504 Msa0156780:intron 45.0%
GATAAGAGATTGGGGATGTG+CGG - chr1_4:23460942-23460961 Msa0156780:intron 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_4:23461227-23461246 Msa0156780:CDS 45.0%
AACAGAGACAAGGGCTGATT+AGG - chr1_4:23461237-23461256 Msa0156780:CDS 45.0%
CATGAGGGTTAACACCAAAG+AGG + chr1_4:23461626-23461645 None:intergenic 45.0%
GGTGTAAATTGGAGAACCAG+TGG + chr1_4:23459637-23459656 None:intergenic 45.0%
GCCACATCAATTTCTGCAAC+AGG - chr1_4:23459798-23459817 Msa0156780:three_prime_UTR 45.0%
AGCTGGGGAACATCTATAGT+TGG - chr1_4:23459846-23459865 Msa0156780:three_prime_UTR 45.0%
GAAGAGTTAGTAAGCCAGTG+AGG - chr1_4:23459919-23459938 Msa0156780:three_prime_UTR 45.0%
ATCATAGGTTGCAACCTCAC+TGG + chr1_4:23459936-23459955 None:intergenic 45.0%
AGCCATTGCTTTACACTCTC+AGG - chr1_4:23460052-23460071 Msa0156780:intron 45.0%
! CACCTGAGAGTGTAAAGCAA+TGG + chr1_4:23460057-23460076 None:intergenic 45.0%
AGATGGCATCTCATAGATGG+AGG - chr1_4:23460436-23460455 Msa0156780:intron 45.0%
!! TTTCTAGGGGTGTTGAGACA+TGG - chr1_4:23460485-23460504 Msa0156780:intron 45.0%
GATAAGAGATTGGGGATGTG+CGG - chr1_4:23460942-23460961 Msa0156780:intron 45.0%
GCAGATGCAAAACAGAGACA+AGG - chr1_4:23461227-23461246 Msa0156780:CDS 45.0%
AACAGAGACAAGGGCTGATT+AGG - chr1_4:23461237-23461256 Msa0156780:CDS 45.0%
CATGAGGGTTAACACCAAAG+AGG + chr1_4:23461626-23461645 None:intergenic 45.0%
TGGCATCTCATAGATGGAGG+AGG - chr1_4:23460439-23460458 Msa0156780:intron 50.0%
GGCATCTCATAGATGGAGGA+GGG - chr1_4:23460440-23460459 Msa0156780:intron 50.0%
! TCCACAAAGTGTCAGCTCAG+TGG - chr1_4:23460994-23461013 Msa0156780:intron 50.0%
ACCACTGAGCTGACACTTTG+TGG + chr1_4:23460998-23461017 None:intergenic 50.0%
GAGACAAGGGCTGATTAGGT+TGG - chr1_4:23461241-23461260 Msa0156780:CDS 50.0%
TGGCATCTCATAGATGGAGG+AGG - chr1_4:23460439-23460458 Msa0156780:intron 50.0%
GGCATCTCATAGATGGAGGA+GGG - chr1_4:23460440-23460459 Msa0156780:intron 50.0%
! TCCACAAAGTGTCAGCTCAG+TGG - chr1_4:23460994-23461013 Msa0156780:intron 50.0%
ACCACTGAGCTGACACTTTG+TGG + chr1_4:23460998-23461017 None:intergenic 50.0%
GAGACAAGGGCTGATTAGGT+TGG - chr1_4:23461241-23461260 Msa0156780:CDS 50.0%
!! CTAGGGGTGTTGAGACATGG+AGG - chr1_4:23460488-23460507 Msa0156780:intron 55.0%
AGAGATTGGGGATGTGCGGA+CGG - chr1_4:23460946-23460965 Msa0156780:intron 55.0%
CCATCACACGACCATCTCTG+AGG + chr1_4:23461063-23461082 None:intergenic 55.0%
CCTCAGAGATGGTCGTGTGA+TGG - chr1_4:23461060-23461079 Msa0156780:intron 55.0%
!! CTAGGGGTGTTGAGACATGG+AGG - chr1_4:23460488-23460507 Msa0156780:intron 55.0%
AGAGATTGGGGATGTGCGGA+CGG - chr1_4:23460946-23460965 Msa0156780:intron 55.0%
CCATCACACGACCATCTCTG+AGG + chr1_4:23461063-23461082 None:intergenic 55.0%
CCTCAGAGATGGTCGTGTGA+TGG - chr1_4:23461060-23461079 Msa0156780:intron 55.0%
GAGATTGGGGATGTGCGGAC+GGG - chr1_4:23460947-23460966 Msa0156780:intron 60.0%
GAGATTGGGGATGTGCGGAC+GGG - chr1_4:23460947-23460966 Msa0156780:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 23459613 23461646 23459613 ID=Msa0156780;Name=Msa0156780
chr1_4 mRNA 23459613 23461646 23459613 ID=Msa0156780-mRNA-1;Parent=Msa0156780;Name=Msa0156780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=182|1|1|1|1|1|2|345|127
chr1_4 exon 23459613 23460062 23459613 ID=Msa0156780-mRNA-1:exon:8219;Parent=Msa0156780-mRNA-1
chr1_4 exon 23461186 23461646 23461186 ID=Msa0156780-mRNA-1:exon:8218;Parent=Msa0156780-mRNA-1
chr1_4 five_prime_UTR 23461465 23461646 23461465 ID=Msa0156780-mRNA-1:five_prime_utr;Parent=Msa0156780-mRNA-1
chr1_4 CDS 23461186 23461464 23461186 ID=Msa0156780-mRNA-1:cds;Parent=Msa0156780-mRNA-1
chr1_4 CDS 23459958 23460062 23459958 ID=Msa0156780-mRNA-1:cds;Parent=Msa0156780-mRNA-1
chr1_4 three_prime_UTR 23459613 23459957 23459613 ID=Msa0156780-mRNA-1:three_prime_utr;Parent=Msa0156780-mRNA-1
Gene Sequence

>Msa0156780

ATGGCCACATCAATTTCTGCAACAGGTTGTGTTGGTTCATCATTCTATGGAAGCTGGGGAACATCTATAGTTGGTGAAGATTACAGCATGTTGGCTAAGTCAGTTTCTTCGCAAGTTCGTATTGGAAGAGTTAGTAAGCCAGTGAGGTTGCAACCTATGATGAAGAATGTTAATGAAGGGAAAGGTATATTTGCTCCAATTGTTGTGGTTACTCGTAATATTGTTGGAAAGAAACGTTTCAATCAGCTTAGAGGCAAAGCCATTGCTTTACACTCTCAGGTAATTACTGAATTCTGCAAATCAATAGGAGCAGATGCAAAACAGAGACAAGGGCTGATTAGGTTGGCTAAGAAGAATGGAGAATGGCTTGGTTTTCTTGCATGA

Protein sequence

>Msa0156780

MATSISATGCVGSSFYGSWGTSIVGEDYSMLAKSVSSQVRIGRVSKPVRLQPMMKNVNEGKGIFAPIVVVTRNIVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLIRLAKKNGEWLGFLA*