AlfalfaGEDB | Msa1100780

M. sativa cultivar zhongmu-4 / Msa1100780

KEGG: K21444
GO: -
PFAM: PF00013.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100780	XP_003621262.1	97.198	571	14	1	1	569	1	571	0.0	1113

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100780	sp\|P58223\|Y4837_ARATH	30.973	565	299	21	23	537	7	530	4.41e-62	218
Msa1100780	sp\|P58223\|Y4837_ARATH	27.794	349	170	13	47	373	310	598	6.02e-23	106

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100780	G7L217	97.198	571	14	1	1	569	1	571	0.0	1113

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0420600	Msa1100780	0.803968	2.705893e-49	-8.615850e-47
Msa0512640	Msa1100780	0.804620	1.978964e-49	-8.615850e-47
Msa1048980	Msa1100780	0.923391	2.825151e-89	-8.615850e-47
Msa1100780	Msa1100870	0.990200	1.609449e-181	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100780	MtrunA17_Chr7g0217681	97.198	571	14	1	1	569	1	571	0.0	1113
Msa1100780	MtrunA17_Chr6g0453421	68.237	573	158	10	1	569	1	553	0.0	691
Msa1100780	MtrunA17_Chr2g0285771	32.423	549	303	16	21	524	22	547	2.61e-72	243
Msa1100780	MtrunA17_Chr2g0285771	26.149	348	199	8	47	364	311	630	4.15e-26	112
Msa1100780	MtrunA17_Chr3g0140741	34.623	491	232	11	27	459	15	474	7.07e-68	232
Msa1100780	MtrunA17_Chr4g0049801	34.802	454	248	11	32	459	4	435	1.62e-64	222
Msa1100780	MtrunA17_Chr4g0049801	29.863	365	178	14	13	329	242	576	1.36e-26	114
Msa1100780	MtrunA17_Chr8g0376551	31.346	587	304	20	23	553	26	569	1.92e-60	211
Msa1100780	MtrunA17_Chr8g0376551	27.778	324	175	10	47	339	313	608	1.32e-25	111
Msa1100780	MtrunA17_Chr4g0002241	31.481	432	239	12	42	464	9	392	5.52e-53	190

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1100780	AT5G15270.3	60.000	540	191	12	11	548	17	533	0.0	618
Msa1100780	AT5G15270.2	60.038	528	186	12	11	536	17	521	0.0	605
Msa1100780	AT5G15270.1	60.038	528	186	12	11	536	17	521	0.0	605
Msa1100780	AT1G14170.3	51.158	475	188	9	26	492	25	463	6.97e-141	417
Msa1100780	AT1G14170.1	51.422	457	182	7	44	492	14	438	8.71e-140	413
Msa1100780	AT1G14170.2	51.656	453	179	7	48	492	10	430	5.54e-139	410
Msa1100780	AT5G46190.1	35.358	461	244	12	49	471	44	488	3.61e-71	241
Msa1100780	AT5G46190.1	29.141	326	155	10	52	334	320	612	2.79e-26	114
Msa1100780	AT5G46190.4	35.358	461	244	12	49	471	44	488	3.61e-71	241
Msa1100780	AT5G46190.4	29.141	326	155	10	52	334	320	612	2.79e-26	114

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Find 318 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGCTTAATCCAAAC+AGG	0.461819	7_3:+31176342	None:intergenic
AAAATTGTATATTCATAAGT+TGG	0.414004	7_3:-31176252	Msa1100780:three_prime_UTR
AAACCTTGGTGGGTCCCTGC+AGG	0.524068	7_3:-31177976	Msa1100780:intron
AAAGGCTCTGATTCAGGTTG+CGG	0.503958	7_3:-31179545	Msa1100780:CDS
AAATATACTTTGTATATGAC+TGG	0.522382	7_3:-31175419	Msa1100780:three_prime_UTR
AAATATCAAGGTTGATAGTT+CGG	0.471588	7_3:-31179209	Msa1100780:CDS
AAATGGCAACGCTAGCTAAA+TGG	0.327704	7_3:+31176082	None:intergenic
AACATCATAGCCGTCCAGGA+TGG	0.633212	7_3:+31176569	None:intergenic
AACCATGGTTACTAAAACCT+TGG	0.433601	7_3:-31177990	Msa1100780:exon
AACCTTGATGCCTCTATCTA+GGG	0.451615	7_3:-31177663	Msa1100780:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGTGAATTGTGACTTTA+GGG	+	chr7_3:31175404-31175423	None:intergenic	30.0%
TGTTTGTGAATTGTGACTTT+AGG	+	chr7_3:31175405-31175424	None:intergenic	30.0%
ACAATTCTCACAATTCACAA+TGG	-	chr7_3:31175424-31175443	Msa1100780:three_prime_UTR	30.0%
TACTTATGATTCACAAACAC+GGG	+	chr7_3:31176264-31176283	None:intergenic	30.0%
CTACTTATGATTCACAAACA+CGG	+	chr7_3:31176265-31176284	None:intergenic	30.0%
CTCAATGTTAGAAAGAGATT+AGG	+	chr7_3:31176643-31176662	None:intergenic	30.0%
TTAGGATTCTTAAGGATGAT+CGG	-	chr7_3:31176980-31176999	Msa1100780:three_prime_UTR	30.0%
AATCTACAGCCCAATTAAAA+AGG	+	chr7_3:31177067-31177086	None:intergenic	30.0%
AATGTTGTAAATCCAGATCA+CGG	+	chr7_3:31177419-31177438	None:intergenic	30.0%
GTATTAAATAGCATCCACAT+GGG	+	chr7_3:31177565-31177584	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	31175357	31182273	31175357	ID=Msa1100780;Name=Msa1100780
chr7_3	mRNA	31175357	31182273	31175357	ID=Msa1100780-mRNA-1;Parent=Msa1100780;Name=Msa1100780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=86\|1\|1\|1\|0.75\|0.66\|9\|2382\|569
chr7_3	exon	31175357	31176782	31175357	ID=Msa1100780-mRNA-1:exon:6602;Parent=Msa1100780-mRNA-1
chr7_3	exon	31176869	31177803	31176869	ID=Msa1100780-mRNA-1:exon:6601;Parent=Msa1100780-mRNA-1
chr7_3	exon	31177977	31178064	31177977	ID=Msa1100780-mRNA-1:exon:6600;Parent=Msa1100780-mRNA-1
chr7_3	exon	31178226	31178290	31178226	ID=Msa1100780-mRNA-1:exon:6599;Parent=Msa1100780-mRNA-1
chr7_3	exon	31178402	31178674	31178402	ID=Msa1100780-mRNA-1:exon:6598;Parent=Msa1100780-mRNA-1
chr7_3	exon	31178784	31179041	31178784	ID=Msa1100780-mRNA-1:exon:6597;Parent=Msa1100780-mRNA-1
chr7_3	exon	31179165	31179593	31179165	ID=Msa1100780-mRNA-1:exon:6596;Parent=Msa1100780-mRNA-1
chr7_3	exon	31180589	31180768	31180589	ID=Msa1100780-mRNA-1:exon:6595;Parent=Msa1100780-mRNA-1
chr7_3	exon	31181750	31182273	31181750	ID=Msa1100780-mRNA-1:exon:6594;Parent=Msa1100780-mRNA-1
chr7_3	five_prime_UTR	31182188	31182273	31182188	ID=Msa1100780-mRNA-1:five_prime_utr;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31181750	31182187	31181750	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31180589	31180768	31180589	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31179165	31179593	31179165	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31178784	31179041	31178784	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31178402	31178674	31178402	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31178226	31178290	31178226	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	CDS	31177998	31178064	31177998	ID=Msa1100780-mRNA-1:cds;Parent=Msa1100780-mRNA-1
chr7_3	three_prime_UTR	31177977	31177997	31177977	ID=Msa1100780-mRNA-1:three_prime_utr;Parent=Msa1100780-mRNA-1
chr7_3	three_prime_UTR	31176869	31177803	31176869	ID=Msa1100780-mRNA-1:three_prime_utr;Parent=Msa1100780-mRNA-1
chr7_3	three_prime_UTR	31175357	31176782	31175357	ID=Msa1100780-mRNA-1:three_prime_utr;Parent=Msa1100780-mRNA-1

Gene Sequence

>Msa1100780

ATGGCTGGTCAAAGAACATCCTACGGCAACAAACGTTCCCACTCACACAACAGCGTTGATGACAACAGAACCACCAACAAACGCCGTAACCCTAACACCGACGAAACCACTCCAAGAGACACATTTCACATAACCCAAGACGACACCGTTTACCGTTACCTTTGCCCTGTTCGCAAAATCGGAAGCATCATTGGCCGCGGCGGCGAGATCGTGAAACAACTACGTCTTGATACTAAGGCGAAGATTCGAATCGGTGAAACTGTTCCTGGTTGTGATGAGCGTGTTGTTACGGTTTATAGTGTTTCTGATGAATCGAATGATTTTGAAGATTCTGGTGAGTTTATGTGTCCTGCTATGGATGCGCTTGTCAGGATTCATCAGAAGGTGATTGCTGAGGATTTGCGTGGTGGTGAAGATGAAGACGTTGATATGGAGAAGGTGGATGGAGGGGATTTGGTCACGGCGAAATTGCTTGTGGCGTCTGATCAGATTGGGTGTGTGATTGGGAAAGGTGGGCAGATTGTTCAGAATATAAGGAGTGAGACCGGTGCACAGATTAGGATTCTTAAGGATGATCGGCTGCCACTTTGTGCGCTGAATTCTGATGAGCTTGTTCAGATCTCTGGTGAGATTGCTGTTGTGAAAAAGGCTCTGATTCAGGTTGCGGCACGGCTTCATGACAACCCTTCACGTACTCAACATTTGCTTACTTCTGCAGTTCCTGGGGTGTATGCGGTCGGTGGTTCAATGGTGGGTTCTCATGGTGGGGCTCCAATTATGGGAATGGCTCCGATTGGTGGTGGTTATGGAGGGTATAAAGGTGATGTTGGAGACTATCCACGGTCCATGTATCCGGGCTCAAGGGATGAAGGTTCTCCGATGGAGTTTTCAGTCCGATTTGTTTGTCCAACTGCTAACATTGGAGGTGTTATAGGTAAGGGCGGTGGTATAATAAATCAAATTAGGCAGGATTCTGGGGCAAATATCAAGGTTGATAGTTCGGCAACTGAAGGAGATGACTGCTTAATAGCCATTTCGGCGAGAGAGTTCTTTGAGGATTCATTCTCCGCAACAATTGAAGCAGCTGTGCTTTTGCAACCCCGGTGCAGTGAGAAAGTTGAAAGAGATTCTGGTATTCTCTCTTTCACTAGCCGGTTACTGGTGTCAAGCTCTCGAATTGGTTGCCTTATTGGTAAAGGAGGATCAATCATTACTGAGATGAGAAGGCTTACAAAAGCTAACATCCGCATCCTATCTAAGGAGGATCTCCCTAAAATTGCAACTGAAGATGATGAAATGGTGCAGATTTCGGGGGAACTAGATATTGCCAAGGACGCTCTTGTGCAAGTACTTACCCGGCTGAGAGCAAATCTTTTTGATAAGGAGCGTTCTGTCTCATCATTGCTTCCACCAGTACTTGCATATCTTCCTGCTTCGCCAGAAGGACCAGATGGTTTCAACTATGAAGGTAGAGATGGAAGACGACATGGACGTGGTGGCTATTCTTATTCTGATGGCTATGGAGGCTCAAGTGATTTTGCATCTGGCGACGGTTATGGAAACTATGGAAGTTCACAGCTTGGTCGAGGTGGTCCTTATGGAGCTTATGGAAGTTATGCTACGGAACGGACTAGTACTTCTGGATTGTCTGATAGATTGTCCGACAGATTGTCTGGTGGTGTATCTCGGAGGAGAAACCATGGTTACTAA

Protein sequence

>Msa1100780

MAGQRTSYGNKRSHSHNSVDDNRTTNKRRNPNTDETTPRDTFHITQDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDESNDFEDSGEFMCPAMDALVRIHQKVIAEDLRGGEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARLHDNPSRTQHLLTSAVPGVYAVGGSMVGSHGGAPIMGMAPIGGGYGGYKGDVGDYPRSMYPGSRDEGSPMEFSVRFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISAREFFEDSFSATIEAAVLLQPRCSEKVERDSGILSFTSRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIAKDALVQVLTRLRANLFDKERSVSSLLPPVLAYLPASPEGPDGFNYEGRDGRRHGRGGYSYSDGYGGSSDFASGDGYGNYGSSQLGRGGPYGAYGSYATERTSTSGLSDRLSDRLSGGVSRRRNHGY*