Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100800 | XP_003621257.1 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 1.08e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100800 | sp|Q9C554|EXPA1_ARATH | 76.800 | 250 | 47 | 3 | 1 | 240 | 1 | 249 | 1.57e-136 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100800 | G7L212 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 5.14e-177 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663300 | Msa1100800 | 0.802556 | 5.303367e-49 | -8.615850e-47 |
| Msa1007270 | Msa1100800 | 0.848091 | 7.641576e-60 | -8.615850e-47 |
| Msa1048920 | Msa1100800 | 0.929944 | 3.355350e-93 | -8.615850e-47 |
| Msa1100800 | Msa1100890 | 0.996509 | 1.918065e-228 | -8.615850e-47 |
| Msa1100800 | Msa1445190 | 0.801196 | 1.009401e-48 | -8.615850e-47 |
| Msa0513160 | Msa1100800 | 0.802616 | 5.156531e-49 | -8.615850e-47 |
| Msa0527860 | Msa1100800 | 0.815162 | 1.064577e-51 | -8.615850e-47 |
| Msa0582450 | Msa1100800 | 0.802604 | 5.184292e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100800 | MtrunA17_Chr7g0217661 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 0.0 | 495 |
| Msa1100800 | MtrunA17_Chr6g0453341 | 86.066 | 244 | 32 | 1 | 1 | 242 | 11 | 254 | 2.46e-143 | 401 |
| Msa1100800 | MtrunA17_Chr5g0417701 | 75.502 | 249 | 50 | 3 | 1 | 240 | 1 | 247 | 1.60e-135 | 381 |
| Msa1100800 | MtrunA17_Chr4g0042521 | 73.896 | 249 | 54 | 3 | 1 | 240 | 1 | 247 | 6.75e-132 | 372 |
| Msa1100800 | MtrunA17_Chr3g0092071 | 78.475 | 223 | 40 | 1 | 26 | 240 | 25 | 247 | 1.29e-131 | 371 |
| Msa1100800 | MtrunA17_Chr3g0128801 | 77.130 | 223 | 43 | 1 | 26 | 240 | 31 | 253 | 7.10e-129 | 364 |
| Msa1100800 | MtrunA17_Chr3g0128791 | 69.960 | 253 | 63 | 3 | 1 | 240 | 1 | 253 | 3.01e-128 | 363 |
| Msa1100800 | MtrunA17_Chr3g0107311 | 69.478 | 249 | 67 | 2 | 1 | 240 | 6 | 254 | 7.06e-126 | 357 |
| Msa1100800 | MtrunA17_Chr3g0107291 | 69.076 | 249 | 68 | 2 | 1 | 240 | 12 | 260 | 3.20e-125 | 355 |
| Msa1100800 | MtrunA17_Chr5g0432611 | 66.397 | 247 | 75 | 1 | 2 | 240 | 5 | 251 | 9.79e-124 | 351 |
| Msa1100800 | MtrunA17_Chr5g0435311 | 65.600 | 250 | 74 | 3 | 1 | 240 | 59 | 306 | 4.38e-117 | 337 |
| Msa1100800 | MtrunA17_Chr7g0238681 | 65.323 | 248 | 75 | 3 | 4 | 240 | 9 | 256 | 4.92e-115 | 329 |
| Msa1100800 | MtrunA17_Chr2g0328261 | 63.563 | 247 | 80 | 2 | 4 | 240 | 12 | 258 | 1.46e-112 | 323 |
| Msa1100800 | MtrunA17_Chr4g0031621 | 63.265 | 245 | 80 | 2 | 6 | 240 | 12 | 256 | 3.24e-108 | 312 |
| Msa1100800 | MtrunA17_Chr1g0193631 | 63.636 | 231 | 72 | 4 | 20 | 238 | 24 | 254 | 3.77e-104 | 302 |
| Msa1100800 | MtrunA17_Chr7g0271001 | 60.816 | 245 | 83 | 5 | 3 | 235 | 5 | 248 | 3.11e-102 | 297 |
| Msa1100800 | MtrunA17_Chr1g0157061 | 60.369 | 217 | 75 | 3 | 33 | 238 | 22 | 238 | 1.19e-93 | 275 |
| Msa1100800 | MtrunA17_Chr7g0218741 | 54.251 | 247 | 103 | 4 | 2 | 239 | 6 | 251 | 4.60e-92 | 271 |
| Msa1100800 | MtrunA17_Chr4g0069711 | 56.444 | 225 | 85 | 4 | 25 | 238 | 60 | 282 | 1.45e-91 | 271 |
| Msa1100800 | MtrunA17_Chr8g0360041 | 58.296 | 223 | 85 | 2 | 23 | 237 | 28 | 250 | 1.22e-90 | 268 |
| Msa1100800 | MtrunA17_Chr7g0218751 | 55.102 | 245 | 102 | 2 | 1 | 237 | 3 | 247 | 5.93e-90 | 266 |
| Msa1100800 | MtrunA17_Chr5g0433841 | 53.304 | 227 | 97 | 2 | 25 | 242 | 40 | 266 | 2.65e-86 | 257 |
| Msa1100800 | MtrunA17_Chr7g0218761 | 58.416 | 202 | 76 | 2 | 45 | 238 | 8 | 209 | 5.91e-82 | 244 |
| Msa1100800 | MtrunA17_Chr4g0021561 | 48.571 | 245 | 114 | 3 | 6 | 240 | 14 | 256 | 4.17e-81 | 243 |
| Msa1100800 | MtrunA17_Chr4g0057091 | 51.230 | 244 | 107 | 4 | 4 | 236 | 14 | 256 | 6.09e-81 | 243 |
| Msa1100800 | MtrunA17_Chr8g0360721 | 59.296 | 199 | 73 | 2 | 45 | 235 | 17 | 215 | 6.33e-81 | 241 |
| Msa1100800 | MtrunA17_Chr5g0398271 | 52.444 | 225 | 97 | 3 | 24 | 238 | 35 | 259 | 1.68e-80 | 242 |
| Msa1100800 | MtrunA17_Chr3g0109801 | 47.458 | 236 | 107 | 5 | 23 | 241 | 50 | 285 | 1.39e-73 | 225 |
| Msa1100800 | MtrunA17_Chr4g0022851 | 56.780 | 118 | 45 | 2 | 1 | 112 | 7 | 124 | 8.04e-41 | 136 |
| Msa1100800 | MtrunA17_Chr4g0022841 | 51.724 | 116 | 56 | 0 | 122 | 237 | 1 | 116 | 4.37e-38 | 129 |
| Msa1100800 | MtrunA17_Chr2g0324191 | 42.177 | 147 | 70 | 3 | 4 | 140 | 11 | 152 | 8.76e-35 | 122 |
| Msa1100800 | MtrunA17_Chr2g0324181 | 47.458 | 118 | 58 | 1 | 123 | 240 | 4 | 117 | 9.26e-34 | 118 |
| Msa1100800 | MtrunA17_Chr2g0324221 | 34.667 | 225 | 131 | 8 | 26 | 238 | 35 | 255 | 5.75e-30 | 112 |
| Msa1100800 | MtrunA17_Chr2g0324201 | 33.725 | 255 | 145 | 11 | 1 | 238 | 6 | 253 | 4.58e-29 | 110 |
| Msa1100800 | MtrunA17_Chr4g0021641 | 33.200 | 250 | 148 | 10 | 4 | 238 | 16 | 261 | 9.98e-28 | 106 |
| Msa1100800 | MtrunA17_Chr7g0231221 | 32.579 | 221 | 129 | 10 | 31 | 235 | 53 | 269 | 2.08e-25 | 100 |
| Msa1100800 | MtrunA17_Chr4g0012801 | 32.743 | 226 | 127 | 9 | 26 | 235 | 42 | 258 | 4.90e-25 | 99.8 |
| Msa1100800 | MtrunA17_Chr7g0231211 | 32.456 | 228 | 128 | 11 | 25 | 235 | 46 | 264 | 1.33e-24 | 98.6 |
| Msa1100800 | MtrunA17_Chr8g0359981 | 60.000 | 80 | 25 | 4 | 68 | 140 | 2 | 81 | 9.58e-24 | 92.4 |
| Msa1100800 | MtrunA17_Chr4g0055601 | 30.493 | 223 | 143 | 8 | 26 | 238 | 28 | 248 | 2.58e-22 | 92.0 |
| Msa1100800 | MtrunA17_Chr4g0055061 | 29.644 | 253 | 151 | 12 | 1 | 235 | 3 | 246 | 6.43e-20 | 85.5 |
| Msa1100800 | MtrunA17_Chr8g0359971 | 50.649 | 77 | 37 | 1 | 161 | 236 | 1 | 77 | 2.93e-19 | 79.3 |
| Msa1100800 | MtrunA17_Chr5g0399811 | 29.130 | 230 | 149 | 10 | 23 | 241 | 26 | 252 | 1.29e-18 | 82.0 |
| Msa1100800 | MtrunA17_Chr4g0055561 | 30.357 | 224 | 141 | 10 | 23 | 235 | 25 | 244 | 3.40e-18 | 80.9 |
| Msa1100800 | MtrunA17_Chr1g0193571 | 57.407 | 54 | 23 | 0 | 185 | 238 | 4 | 57 | 5.41e-16 | 70.5 |
| Msa1100800 | MtrunA17_Chr4g0038741 | 27.854 | 219 | 125 | 9 | 37 | 235 | 32 | 237 | 2.38e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100800 | AT1G69530.2 | 76.800 | 250 | 47 | 3 | 1 | 240 | 1 | 249 | 1.60e-137 | 386 |
| Msa1100800 | AT1G69530.1 | 76.800 | 250 | 47 | 3 | 1 | 240 | 1 | 249 | 1.60e-137 | 386 |
| Msa1100800 | AT2G03090.1 | 77.510 | 249 | 45 | 3 | 1 | 240 | 6 | 252 | 6.08e-137 | 385 |
| Msa1100800 | AT3G29030.1 | 83.945 | 218 | 34 | 1 | 26 | 242 | 38 | 255 | 9.26e-137 | 385 |
| Msa1100800 | AT1G69530.3 | 77.236 | 246 | 45 | 3 | 1 | 236 | 1 | 245 | 3.51e-136 | 384 |
| Msa1100800 | AT1G26770.1 | 76.955 | 243 | 46 | 2 | 6 | 240 | 8 | 248 | 7.96e-134 | 377 |
| Msa1100800 | AT1G26770.2 | 76.955 | 243 | 46 | 2 | 6 | 240 | 18 | 258 | 9.41e-134 | 377 |
| Msa1100800 | AT5G56320.1 | 70.325 | 246 | 63 | 2 | 3 | 240 | 8 | 251 | 1.61e-128 | 364 |
| Msa1100800 | AT5G56320.2 | 70.325 | 246 | 63 | 2 | 3 | 240 | 8 | 251 | 1.61e-128 | 364 |
| Msa1100800 | AT5G56320.3 | 70.325 | 246 | 63 | 2 | 3 | 240 | 8 | 251 | 6.96e-128 | 364 |
| Msa1100800 | AT2G40610.1 | 67.742 | 248 | 67 | 3 | 2 | 240 | 10 | 253 | 2.26e-122 | 348 |
| Msa1100800 | AT2G39700.1 | 65.613 | 253 | 69 | 4 | 4 | 240 | 5 | 255 | 2.23e-119 | 341 |
| Msa1100800 | AT5G02260.1 | 64.516 | 248 | 78 | 2 | 3 | 240 | 9 | 256 | 8.85e-118 | 337 |
| Msa1100800 | AT5G05290.1 | 64.257 | 249 | 75 | 3 | 1 | 240 | 12 | 255 | 4.89e-116 | 332 |
| Msa1100800 | AT3G55500.1 | 62.400 | 250 | 84 | 2 | 1 | 240 | 9 | 258 | 4.93e-116 | 332 |
| Msa1100800 | AT1G69530.5 | 72.174 | 230 | 51 | 4 | 1 | 220 | 1 | 227 | 6.45e-116 | 332 |
| Msa1100800 | AT1G69530.4 | 68.000 | 250 | 39 | 4 | 1 | 240 | 1 | 219 | 1.05e-115 | 330 |
| Msa1100800 | AT2G37640.1 | 70.667 | 225 | 56 | 2 | 26 | 240 | 36 | 260 | 2.14e-115 | 331 |
| Msa1100800 | AT2G28950.1 | 62.745 | 255 | 80 | 3 | 1 | 240 | 1 | 255 | 7.76e-111 | 319 |
| Msa1100800 | AT2G37640.2 | 68.269 | 208 | 56 | 2 | 43 | 240 | 28 | 235 | 1.11e-102 | 298 |
| Msa1100800 | AT4G01630.1 | 58.704 | 247 | 89 | 5 | 2 | 235 | 3 | 249 | 4.61e-101 | 294 |
| Msa1100800 | AT1G20190.1 | 62.273 | 220 | 72 | 3 | 28 | 236 | 28 | 247 | 7.85e-98 | 286 |
| Msa1100800 | AT5G39280.1 | 55.263 | 228 | 96 | 1 | 17 | 238 | 45 | 272 | 3.99e-92 | 272 |
| Msa1100800 | AT5G39300.1 | 55.357 | 224 | 94 | 1 | 21 | 238 | 50 | 273 | 7.12e-91 | 269 |
| Msa1100800 | AT5G39270.1 | 54.955 | 222 | 94 | 1 | 23 | 238 | 55 | 276 | 4.26e-89 | 265 |
| Msa1100800 | AT5G39290.1 | 54.091 | 220 | 95 | 1 | 25 | 238 | 57 | 276 | 9.33e-88 | 261 |
| Msa1100800 | AT5G39310.1 | 53.304 | 227 | 99 | 2 | 19 | 238 | 83 | 309 | 2.41e-83 | 251 |
| Msa1100800 | AT1G12560.1 | 50.820 | 244 | 110 | 3 | 2 | 235 | 12 | 255 | 1.29e-82 | 248 |
| Msa1100800 | AT1G62980.1 | 50.820 | 244 | 108 | 4 | 6 | 238 | 11 | 253 | 5.96e-82 | 246 |
| Msa1100800 | AT3G15370.1 | 50.820 | 244 | 110 | 6 | 7 | 240 | 8 | 251 | 4.33e-80 | 241 |
| Msa1100800 | AT3G03220.1 | 50.000 | 226 | 104 | 2 | 25 | 241 | 39 | 264 | 8.24e-79 | 238 |
| Msa1100800 | AT5G39260.1 | 53.636 | 220 | 100 | 2 | 21 | 238 | 40 | 259 | 2.93e-78 | 237 |
| Msa1100800 | AT1G20190.2 | 57.754 | 187 | 68 | 3 | 61 | 236 | 2 | 188 | 5.76e-76 | 228 |
| Msa1100800 | AT4G38210.1 | 45.817 | 251 | 124 | 3 | 3 | 241 | 5 | 255 | 5.58e-75 | 228 |
| Msa1100800 | AT3G15370.2 | 45.255 | 274 | 110 | 7 | 7 | 240 | 8 | 281 | 1.43e-73 | 225 |
| Msa1100800 | AT2G20750.1 | 33.193 | 238 | 145 | 7 | 14 | 238 | 28 | 264 | 9.98e-33 | 120 |
| Msa1100800 | AT4G28250.1 | 32.950 | 261 | 148 | 10 | 1 | 238 | 1 | 257 | 1.82e-31 | 117 |
| Msa1100800 | AT4G28250.2 | 31.538 | 260 | 147 | 10 | 1 | 238 | 1 | 251 | 7.83e-28 | 107 |
| Msa1100800 | AT1G65680.1 | 32.456 | 228 | 135 | 9 | 23 | 235 | 44 | 267 | 1.21e-25 | 101 |
| Msa1100800 | AT2G20750.2 | 34.463 | 177 | 104 | 5 | 14 | 179 | 28 | 203 | 1.13e-24 | 97.8 |
| Msa1100800 | AT2G45110.1 | 30.859 | 256 | 143 | 11 | 1 | 235 | 11 | 253 | 3.87e-22 | 92.0 |
| Msa1100800 | AT1G65681.1 | 33.014 | 209 | 123 | 9 | 40 | 235 | 12 | 216 | 1.07e-21 | 90.1 |
| Msa1100800 | AT4G28250.4 | 32.487 | 197 | 111 | 8 | 1 | 184 | 8 | 195 | 8.15e-21 | 87.4 |
| Msa1100800 | AT4G28250.3 | 32.663 | 199 | 105 | 8 | 1 | 179 | 1 | 190 | 3.36e-20 | 85.9 |
| Msa1100800 | AT4G17030.1 | 30.455 | 220 | 142 | 8 | 25 | 235 | 26 | 243 | 6.89e-20 | 85.9 |
| Msa1100800 | AT3G60570.1 | 28.251 | 223 | 142 | 7 | 26 | 235 | 34 | 251 | 6.46e-18 | 80.9 |
| Msa1100800 | AT3G45970.2 | 26.667 | 210 | 128 | 9 | 44 | 235 | 14 | 215 | 1.96e-13 | 68.2 |
| Msa1100800 | AT3G45960.2 | 27.805 | 205 | 121 | 9 | 49 | 235 | 46 | 241 | 3.41e-12 | 64.7 |
| Msa1100800 | AT4G38400.1 | 26.768 | 198 | 132 | 9 | 49 | 235 | 47 | 242 | 1.65e-11 | 62.8 |
| Msa1100800 | AT3G45960.1 | 28.646 | 192 | 110 | 9 | 62 | 235 | 11 | 193 | 2.27e-11 | 62.0 |
| Msa1100800 | AT3G45970.1 | 25.854 | 205 | 126 | 9 | 49 | 235 | 46 | 242 | 6.65e-11 | 61.2 |
Find 113 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACCTTGTACTTTAATTAT+TGG | 0.154188 | 7_3:+31216991 | Msa1100800:three_prime_UTR |
| GTAGTGTCCCCTACACTTTC+AGG | 0.203364 | 7_3:-31217082 | None:intergenic |
| CAAAGTAACTCTTACCTTAA+TGG | 0.204631 | 7_3:+31216357 | Msa1100800:CDS |
| AATGCTCATGCTACTTTCTA+TGG | 0.220166 | 7_3:+31214907 | Msa1100800:CDS |
| TACATGGTTTCTCATGTAAA+TGG | 0.221650 | 7_3:+31214859 | Msa1100800:CDS |
| TACATCTTAGTGGATCTATT+AGG | 0.223857 | 7_3:+31217187 | Msa1100800:three_prime_UTR |
| TTTAAGTTGAGTAGTGTAAA+TGG | 0.236702 | 7_3:+31216755 | Msa1100800:three_prime_UTR |
| GCTCCTGCTGGATGGTCTTT+TGG | 0.239807 | 7_3:+31216441 | Msa1100800:CDS |
| ATAGGTGGGGCTTGTGGATA+TGG | 0.246425 | 7_3:+31215331 | Msa1100800:intron |
| TTCCATAACCTTGGCTATAA+AGG | 0.251122 | 7_3:-31215357 | None:intergenic |
| AGGAAAGACTTTGTCCATTA+AGG | 0.266746 | 7_3:-31216371 | None:intergenic |
| TATTGGTTAATGAATGTAAA+AGG | 0.283242 | 7_3:+31217008 | Msa1100800:three_prime_UTR |
| AAAGGAGTTGTTTGTGGAAA+TGG | 0.293309 | 7_3:-31214701 | None:intergenic |
| TATGGTGGAAGTGATGCTTC+TGG | 0.307440 | 7_3:+31214925 | Msa1100800:CDS |
| TCTAGATCTTGAACCTTTGA+TGG | 0.316697 | 7_3:-31216298 | None:intergenic |
| ACATCTTAGTGGATCTATTA+GGG | 0.323590 | 7_3:+31217188 | Msa1100800:three_prime_UTR |
| TGGAAGTAACTTGTATTATA+AGG | 0.326107 | 7_3:-31217259 | None:intergenic |
| ACCACCAGGTGGACAGAAAT+TGG | 0.328400 | 7_3:-31215503 | None:intergenic |
| GGCAAGCCATGTCAAGGAAT+TGG | 0.336529 | 7_3:+31216322 | Msa1100800:CDS |
| GCAAGCCATGTCAAGGAATT+GGG | 0.340806 | 7_3:+31216323 | Msa1100800:CDS |
| TCCACAAACAACTCCTTTCA+AGG | 0.341172 | 7_3:+31214706 | Msa1100800:five_prime_UTR |
| AACCTTTATAGCCAAGGTTA+TGG | 0.350030 | 7_3:+31215355 | Msa1100800:CDS |
| CAGGTTTGCAAGTTGAAGTT+AGG | 0.350460 | 7_3:-31217063 | None:intergenic |
| CAACTTTAAACCGTTTGAAC+CGG | 0.351388 | 7_3:-31216610 | None:intergenic |
| TCATTCAATGCTGCTCCTGC+TGG | 0.373533 | 7_3:+31216429 | Msa1100800:CDS |
| GAAAGATCAAAATGGTGATT+AGG | 0.383324 | 7_3:-31215538 | None:intergenic |
| TTGCTGGTTTATTTCTGATT+CGG | 0.383659 | 7_3:+31216654 | Msa1100800:three_prime_UTR |
| GTACAATTGACATAGGTATA+AGG | 0.404063 | 7_3:-31217214 | None:intergenic |
| TTAAGTTGAGTAGTGTAAAT+GGG | 0.411771 | 7_3:+31216756 | Msa1100800:three_prime_UTR |
| CCTTCGACATTGTTAGTTTG+CGG | 0.413281 | 7_3:-31216552 | None:intergenic |
| TGTGGAAATGGAAAGGGAAT+TGG | 0.415617 | 7_3:-31214689 | None:intergenic |
| TTAGTACTTGTCACAAATGT+TGG | 0.427387 | 7_3:+31216249 | Msa1100800:CDS |
| AAATGGGATTTATTAGTGTT+GGG | 0.427741 | 7_3:+31216772 | Msa1100800:three_prime_UTR |
| TAAATGGGATTTATTAGTGT+TGG | 0.429812 | 7_3:+31216771 | Msa1100800:three_prime_UTR |
| GGAATTAGATTCACCATCAA+TGG | 0.441161 | 7_3:+31216210 | Msa1100800:CDS |
| AACTTTAAACCGTTTGAACC+GGG | 0.445227 | 7_3:-31216609 | None:intergenic |
| AACTGACACACTTGAGCTGT+TGG | 0.450735 | 7_3:-31214623 | None:intergenic |
| TTGTTAGTTTGCGGTTCAAT+TGG | 0.450998 | 7_3:-31216543 | None:intergenic |
| GTCACAAATGTTGGAGGTGC+TGG | 0.460146 | 7_3:+31216258 | Msa1100800:CDS |
| ATTGGTTAAACCATTCGATT+CGG | 0.469049 | 7_3:-31216525 | None:intergenic |
| CTGTATTTGTTCCATAACCT+TGG | 0.469990 | 7_3:-31215366 | None:intergenic |
| TTTGTTGTCACCACAAGTAA+TGG | 0.472648 | 7_3:+31216393 | Msa1100800:CDS |
| CACATTGCTCAATATAGAGC+AGG | 0.475970 | 7_3:+31215577 | Msa1100800:CDS |
| GATCCACAATGGTGTAATCC+TGG | 0.478438 | 7_3:+31215460 | Msa1100800:CDS |
| ATGGTGGAAGTGATGCTTCT+GGG | 0.482585 | 7_3:+31214926 | Msa1100800:CDS |
| GTGAGATGCAAGAGAAGAGG+TGG | 0.483025 | 7_3:+31216189 | Msa1100800:CDS |
| GAAGTAAGAATGTCCATTGA+TGG | 0.484459 | 7_3:-31216223 | None:intergenic |
| TAGGTTGAGAAAGATCAAAA+TGG | 0.486595 | 7_3:-31215546 | None:intergenic |
| TGGTTTCGTCCCGGTTCAAA+CGG | 0.488905 | 7_3:+31216600 | Msa1100800:three_prime_UTR |
| GCCGTGGTGGTCATGCTAGC+TGG | 0.491703 | 7_3:+31214881 | Msa1100800:CDS |
| GTGTTGGGCTACTTAGAAGA+TGG | 0.492640 | 7_3:+31216787 | Msa1100800:three_prime_UTR |
| TCAAAGGTTCAAGATCTAGA+TGG | 0.498022 | 7_3:+31216301 | Msa1100800:CDS |
| ACCTTGAAAGGAGTTGTTTG+TGG | 0.504549 | 7_3:-31214707 | None:intergenic |
| CTTGCAAACCTGAAAGTGTA+GGG | 0.512505 | 7_3:+31217074 | Msa1100800:three_prime_UTR |
| ACTGACACACTTGAGCTGTT+GGG | 0.516623 | 7_3:-31214622 | None:intergenic |
| AGATCAAAATGGTGATTAGG+AGG | 0.519211 | 7_3:-31215535 | None:intergenic |
| GCAGTAACTATAATAGATCC+AGG | 0.520583 | 7_3:-31215478 | None:intergenic |
| AGCATTTGTAGATGATGTGC+TGG | 0.529065 | 7_3:+31216891 | Msa1100800:three_prime_UTR |
| TCAATGCTGCTCCTGCTGGA+TGG | 0.529981 | 7_3:+31216433 | Msa1100800:CDS |
| GTTGTTTGTGGAAATGGAAA+GGG | 0.530687 | 7_3:-31214695 | None:intergenic |
| GTTTCTCATTTGCTGAGGCA+TGG | 0.530802 | 7_3:-31216925 | None:intergenic |
| AAGTGATGCTTCTGGGACAA+TGG | 0.531264 | 7_3:+31214933 | Msa1100800:CDS |
| GCCACCAATTTCTGTCCACC+TGG | 0.533315 | 7_3:+31215499 | Msa1100800:CDS |
| AGTTACCTTCTGTAAGCTAC+AGG | 0.533493 | 7_3:-31215607 | None:intergenic |
| GTTCAACCGTGGTTTCGTCC+CGG | 0.536272 | 7_3:+31216591 | Msa1100800:three_prime_UTR |
| ATTAAAAGAAATCAGTTGAG+TGG | 0.543499 | 7_3:-31217279 | None:intergenic |
| AGAAGAAGATGAACCTTGAA+AGG | 0.544689 | 7_3:-31214719 | None:intergenic |
| AAAAGAATTTAGAGAACAAG+AGG | 0.545424 | 7_3:-31217236 | None:intergenic |
| AATTGGAAAGGAATAAATAG+AGG | 0.546487 | 7_3:-31214672 | None:intergenic |
| AGGGTGAGATGCAAGAGAAG+AGG | 0.548973 | 7_3:+31216186 | Msa1100800:intron |
| GTACTTGTCACAAATGTTGG+AGG | 0.553223 | 7_3:+31216252 | Msa1100800:CDS |
| GTACATTCTGTGGCCATCAA+AGG | 0.555005 | 7_3:+31216285 | Msa1100800:CDS |
| AGTTGTTTGTGGAAATGGAA+AGG | 0.555702 | 7_3:-31214696 | None:intergenic |
| TATGGAAACCTTTATAGCCA+AGG | 0.558405 | 7_3:+31215349 | Msa1100800:CDS |
| AACATTAATCTTTCTCAACA+TGG | 0.558853 | 7_3:-31216951 | None:intergenic |
| TAACCAATAATTAAAGTACA+AGG | 0.564183 | 7_3:-31216994 | None:intergenic |
| AGTGATGCTTCTGGGACAAT+GGG | 0.566887 | 7_3:+31214934 | Msa1100800:CDS |
| ATTTCTGTCCACCTGGTGGT+TGG | 0.569910 | 7_3:+31215506 | Msa1100800:CDS |
| GTTGAACTGCCTTCCAGTGT+AGG | 0.570697 | 7_3:-31216469 | None:intergenic |
| GCTCATGCTACTTTCTATGG+TGG | 0.573969 | 7_3:+31214910 | Msa1100800:CDS |
| GGCAAGTTTCTCATTTGCTG+AGG | 0.575355 | 7_3:-31216930 | None:intergenic |
| GTTTCTCATGTAAATGGCCG+TGG | 0.575595 | 7_3:+31214865 | Msa1100800:CDS |
| CAAGCCATGTCAAGGAATTG+GGG | 0.577427 | 7_3:+31216324 | Msa1100800:CDS |
| ACTTGCAAACCTGAAAGTGT+AGG | 0.582679 | 7_3:+31217073 | Msa1100800:three_prime_UTR |
| TGCTGGTGATGTACATTCTG+TGG | 0.583608 | 7_3:+31216275 | Msa1100800:CDS |
| TGACCAAAAGACCATCCAGC+AGG | 0.595163 | 7_3:-31216444 | None:intergenic |
| GGAGGGTCACACCAACCACC+AGG | 0.606947 | 7_3:-31215517 | None:intergenic |
| TTGGTCAGACCTACACTGGA+AGG | 0.609630 | 7_3:+31216460 | Msa1100800:CDS |
| AAATGGAAAGGGAATTGGAA+AGG | 0.609886 | 7_3:-31214684 | None:intergenic |
| CTAGATGGCAAGCCATGTCA+AGG | 0.612177 | 7_3:+31216316 | Msa1100800:CDS |
| ACCAATTTCTGTCCACCTGG+TGG | 0.612750 | 7_3:+31215502 | Msa1100800:CDS |
| AAAGTTGTTGAATCACGACT+TGG | 0.613137 | 7_3:+31216626 | Msa1100800:three_prime_UTR |
| GGGACGAAACCACGGTTGAA+CGG | 0.616061 | 7_3:-31216589 | None:intergenic |
| ACAAGAGGTACAATTGACAT+AGG | 0.619039 | 7_3:-31217221 | None:intergenic |
| TTCAACAATGGATTGAGTTG+TGG | 0.619250 | 7_3:+31215409 | Msa1100800:CDS |
| AGCACTGCACTATTCAACAA+TGG | 0.624923 | 7_3:+31215397 | Msa1100800:CDS |
| CCGCAAACTAACAATGTCGA+AGG | 0.625701 | 7_3:+31216552 | Msa1100800:three_prime_UTR |
| GATCCAGGATTACACCATTG+TGG | 0.626873 | 7_3:-31215463 | None:intergenic |
| TTGTACCTGTAGCTTACAGA+AGG | 0.627293 | 7_3:+31215602 | Msa1100800:CDS |
| ACCAGGTGGACAGAAATTGG+TGG | 0.636241 | 7_3:-31215500 | None:intergenic |
| GATCAAAATGGTGATTAGGA+GGG | 0.641492 | 7_3:-31215534 | None:intergenic |
| TTTGAACCGGGACGAAACCA+CGG | 0.642365 | 7_3:-31216597 | None:intergenic |
| ACATTGCTCAATATAGAGCA+GGG | 0.646744 | 7_3:+31215578 | Msa1100800:CDS |
| ATTACTTGTGGTGACAACAA+AGG | 0.647547 | 7_3:-31216391 | None:intergenic |
| TCTCATGTAAATGGCCGTGG+TGG | 0.654852 | 7_3:+31214868 | Msa1100800:CDS |
| GGTTCAAGAGAGAACAAACA+AGG | 0.656032 | 7_3:-31217119 | None:intergenic |
| GGGTCACACCAACCACCAGG+TGG | 0.687412 | 7_3:-31215514 | None:intergenic |
| TCCAGCTAGCATGACCACCA+CGG | 0.691439 | 7_3:-31214882 | None:intergenic |
| AAGCCATGTCAAGGAATTGG+GGG | 0.694892 | 7_3:+31216325 | Msa1100800:CDS |
| TTGCAAACCTGAAAGTGTAG+GGG | 0.696424 | 7_3:+31217075 | Msa1100800:three_prime_UTR |
| CACAAGTAATGGTCACAGTG+TGG | 0.698815 | 7_3:+31216404 | Msa1100800:CDS |
| CACACTGTGACCATTACTTG+TGG | 0.700863 | 7_3:-31216403 | None:intergenic |
| AATGTGTGAATGATCCACAA+TGG | 0.752509 | 7_3:+31215449 | Msa1100800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATATAATAAAAAA+GGG | - | chr7_3:31216848-31216867 | None:intergenic | 0.0% |
| !!! | TAATAACATTTTTCTTTTAT+AGG | + | chr7_3:31215313-31215332 | Msa1100800:intron | 10.0% |
| !!! | TTGTTTTTGTAAAATAAAAT+CGG | + | chr7_3:31215708-31215727 | Msa1100800:intron | 10.0% |
| !!! | TTGATTTTGATTTTATTATA+TGG | + | chr7_3:31216866-31216885 | Msa1100800:three_prime_UTR | 10.0% |
| !! | AAATAAAAATGAATAATGTT+AGG | - | chr7_3:31217143-31217162 | None:intergenic | 10.0% |
| !!! | TAACATTATTCATTTTTATT+TGG | + | chr7_3:31217142-31217161 | Msa1100800:three_prime_UTR | 10.0% |
| !!! | ACGAAACTTTTTTATTTTTT+TGG | - | chr7_3:31215983-31216002 | None:intergenic | 15.0% |
| !!! | ATATAATCTCATTTTTTACT+TGG | - | chr7_3:31217308-31217327 | None:intergenic | 15.0% |
| !!! | CATTTCAACGATTTTTTTTA+CGG | - | chr7_3:31215230-31215249 | None:intergenic | 20.0% |
| !!! | TAACATTTTTCTTTTATAGG+TGG | + | chr7_3:31215316-31215335 | Msa1100800:intron | 20.0% |
| !!! | AACATTTTTCTTTTATAGGT+GGG | + | chr7_3:31215317-31215336 | Msa1100800:intron | 20.0% |
| !! | TTTATCTGAAAACAAGTTTA+TGG | + | chr7_3:31215773-31215792 | Msa1100800:intron | 20.0% |
| !!! | TGAATGAAGTTTTCATAATT+TGG | - | chr7_3:31215887-31215906 | None:intergenic | 20.0% |
| !!! | TGTATAGTAACTTTTATGTT+AGG | - | chr7_3:31216019-31216038 | None:intergenic | 20.0% |
| !!! | AGAATTTATTTTGTGTATGT+CGG | - | chr7_3:31216086-31216105 | None:intergenic | 20.0% |
| !!! | GATAATTTTCTTTTTGTTCT+TGG | + | chr7_3:31216156-31216175 | Msa1100800:intron | 20.0% |
| !! | TAACCTTGTACTTTAATTAT+TGG | + | chr7_3:31216991-31217010 | Msa1100800:three_prime_UTR | 20.0% |
| !! | TAACCAATAATTAAAGTACA+AGG | - | chr7_3:31216997-31217016 | None:intergenic | 20.0% |
| !!! | TATTGGTTAATGAATGTAAA+AGG | + | chr7_3:31217008-31217027 | Msa1100800:three_prime_UTR | 20.0% |
| !! | TTAATTGTGTGATAAAAAAG+AGG | + | chr7_3:31217038-31217057 | Msa1100800:three_prime_UTR | 20.0% |
| ! | AATTGGAAAGGAATAAATAG+AGG | - | chr7_3:31214675-31214694 | None:intergenic | 25.0% |
| ! | ACAAGTGAAAGAAAAAAGAA+AGG | - | chr7_3:31214772-31214791 | None:intergenic | 25.0% |
| !! | TTCAGAAAGCAAACAAATTT+TGG | + | chr7_3:31215086-31215105 | Msa1100800:intron | 25.0% |
| ! | ATAAATTTCATGAAGTCACA+CGG | - | chr7_3:31215189-31215208 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTTTATAGGTG+GGG | + | chr7_3:31215318-31215337 | Msa1100800:intron | 25.0% |
| !!! | AAGTAACTTTTTAGCTATCT+AGG | - | chr7_3:31215822-31215841 | None:intergenic | 25.0% |
| ! | TTTGAAGATAAAGTCGATTA+TGG | + | chr7_3:31215851-31215870 | Msa1100800:intron | 25.0% |
| !! | TTTTTGTTCTTGGATTTTGA+AGG | + | chr7_3:31216166-31216185 | Msa1100800:intron | 25.0% |
| !! | TTTTGTTCTTGGATTTTGAA+GGG | + | chr7_3:31216167-31216186 | Msa1100800:intron | 25.0% |
| !!! | TTTAAGTTGAGTAGTGTAAA+TGG | + | chr7_3:31216755-31216774 | Msa1100800:three_prime_UTR | 25.0% |
| !!! | TTAAGTTGAGTAGTGTAAAT+GGG | + | chr7_3:31216756-31216775 | Msa1100800:three_prime_UTR | 25.0% |
| ! | TAAATGGGATTTATTAGTGT+TGG | + | chr7_3:31216771-31216790 | Msa1100800:three_prime_UTR | 25.0% |
| ! | AAATGGGATTTATTAGTGTT+GGG | + | chr7_3:31216772-31216791 | Msa1100800:three_prime_UTR | 25.0% |
| ! | ATTTGCCTCAAAAAAAAGAA+GGG | - | chr7_3:31216818-31216837 | None:intergenic | 25.0% |
| ! | AACATTAATCTTTCTCAACA+TGG | - | chr7_3:31216954-31216973 | None:intergenic | 25.0% |
| !! | TAAGACATTTTACATCTTAG+TGG | + | chr7_3:31217177-31217196 | Msa1100800:three_prime_UTR | 25.0% |
| ! | AAAAGAATTTAGAGAACAAG+AGG | - | chr7_3:31217239-31217258 | None:intergenic | 25.0% |
| !! | TGGAAGTAACTTGTATTATA+AGG | - | chr7_3:31217262-31217281 | None:intergenic | 25.0% |
| ! | ATTAAAAGAAATCAGTTGAG+TGG | - | chr7_3:31217282-31217301 | None:intergenic | 25.0% |
| TCTCTATGCTTCATTTATGT+AGG | + | chr7_3:31214799-31214818 | Msa1100800:intron | 30.0% | |
| !!! | TCTTCTTGCTATTTTCTACA+TGG | + | chr7_3:31214843-31214862 | Msa1100800:CDS | 30.0% |
| TACATGGTTTCTCATGTAAA+TGG | + | chr7_3:31214859-31214878 | Msa1100800:CDS | 30.0% | |
| AACAAACATCTTAACGAACT+TGG | + | chr7_3:31214999-31215018 | Msa1100800:intron | 30.0% | |
| TTTACGGTTGAAGATTTCTA+CGG | - | chr7_3:31215214-31215233 | None:intergenic | 30.0% | |
| GAAAGATCAAAATGGTGATT+AGG | - | chr7_3:31215541-31215560 | None:intergenic | 30.0% | |
| ! | TAGGTTGAGAAAGATCAAAA+TGG | - | chr7_3:31215549-31215568 | None:intergenic | 30.0% |
| TGAGCAATGTGTTGAAAAAT+AGG | - | chr7_3:31215568-31215587 | None:intergenic | 30.0% | |
| GACTTGAAATGATTGATGTT+TGG | + | chr7_3:31215922-31215941 | Msa1100800:intron | 30.0% | |
| ATAGTAAAAGCGAAGTTTGA+AGG | + | chr7_3:31216045-31216064 | Msa1100800:intron | 30.0% | |
| TTAGTACTTGTCACAAATGT+TGG | + | chr7_3:31216249-31216268 | Msa1100800:CDS | 30.0% | |
| CAAAGTAACTCTTACCTTAA+TGG | + | chr7_3:31216357-31216376 | Msa1100800:CDS | 30.0% | |
| !!! | GTTTTTAAAACCGAATCGAA+TGG | + | chr7_3:31216515-31216534 | Msa1100800:three_prime_UTR | 30.0% |
| ATTGGTTAAACCATTCGATT+CGG | - | chr7_3:31216528-31216547 | None:intergenic | 30.0% | |
| !! | TTGCTGGTTTATTTCTGATT+CGG | + | chr7_3:31216654-31216673 | Msa1100800:three_prime_UTR | 30.0% |
| !!! | TTTAGCCCTTCTTTTTTTTG+AGG | + | chr7_3:31216810-31216829 | Msa1100800:three_prime_UTR | 30.0% |
| CATTTGCCTCAAAAAAAAGA+AGG | - | chr7_3:31216819-31216838 | None:intergenic | 30.0% | |
| !!! | CTTCTTTTTTTTGAGGCAAA+TGG | + | chr7_3:31216817-31216836 | Msa1100800:three_prime_UTR | 30.0% |
| ! | TACATCTTAGTGGATCTATT+AGG | + | chr7_3:31217187-31217206 | Msa1100800:three_prime_UTR | 30.0% |
| ! | ACATCTTAGTGGATCTATTA+GGG | + | chr7_3:31217188-31217207 | Msa1100800:three_prime_UTR | 30.0% |
| GTACAATTGACATAGGTATA+AGG | - | chr7_3:31217217-31217236 | None:intergenic | 30.0% | |
| AAATGGAAAGGGAATTGGAA+AGG | - | chr7_3:31214687-31214706 | None:intergenic | 35.0% | |
| GTTGTTTGTGGAAATGGAAA+GGG | - | chr7_3:31214698-31214717 | None:intergenic | 35.0% | |
| AGTTGTTTGTGGAAATGGAA+AGG | - | chr7_3:31214699-31214718 | None:intergenic | 35.0% | |
| AAAGGAGTTGTTTGTGGAAA+TGG | - | chr7_3:31214704-31214723 | None:intergenic | 35.0% | |
| AGAAGAAGATGAACCTTGAA+AGG | - | chr7_3:31214722-31214741 | None:intergenic | 35.0% | |
| !! | AATGCTCATGCTACTTTCTA+TGG | + | chr7_3:31214907-31214926 | Msa1100800:CDS | 35.0% |
| GACAGTGAAGATTTCAAACT+TGG | - | chr7_3:31215134-31215153 | None:intergenic | 35.0% | |
| TATGGAAACCTTTATAGCCA+AGG | + | chr7_3:31215349-31215368 | Msa1100800:CDS | 35.0% | |
| AACCTTTATAGCCAAGGTTA+TGG | + | chr7_3:31215355-31215374 | Msa1100800:CDS | 35.0% | |
| TTCCATAACCTTGGCTATAA+AGG | - | chr7_3:31215360-31215379 | None:intergenic | 35.0% | |
| CTGTATTTGTTCCATAACCT+TGG | - | chr7_3:31215369-31215388 | None:intergenic | 35.0% | |
| !! | TTCAACAATGGATTGAGTTG+TGG | + | chr7_3:31215409-31215428 | Msa1100800:CDS | 35.0% |
| AATGTGTGAATGATCCACAA+TGG | + | chr7_3:31215449-31215468 | Msa1100800:CDS | 35.0% | |
| GCAGTAACTATAATAGATCC+AGG | - | chr7_3:31215481-31215500 | None:intergenic | 35.0% | |
| GATCAAAATGGTGATTAGGA+GGG | - | chr7_3:31215537-31215556 | None:intergenic | 35.0% | |
| AGATCAAAATGGTGATTAGG+AGG | - | chr7_3:31215538-31215557 | None:intergenic | 35.0% | |
| ACATTGCTCAATATAGAGCA+GGG | + | chr7_3:31215578-31215597 | Msa1100800:CDS | 35.0% | |
| GGAATTAGATTCACCATCAA+TGG | + | chr7_3:31216210-31216229 | Msa1100800:CDS | 35.0% | |
| GAAGTAAGAATGTCCATTGA+TGG | - | chr7_3:31216226-31216245 | None:intergenic | 35.0% | |
| TCTAGATCTTGAACCTTTGA+TGG | - | chr7_3:31216301-31216320 | None:intergenic | 35.0% | |
| TCAAAGGTTCAAGATCTAGA+TGG | + | chr7_3:31216301-31216320 | Msa1100800:CDS | 35.0% | |
| AGGAAAGACTTTGTCCATTA+AGG | - | chr7_3:31216374-31216393 | None:intergenic | 35.0% | |
| ATTACTTGTGGTGACAACAA+AGG | - | chr7_3:31216394-31216413 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCACCACAAGTAA+TGG | + | chr7_3:31216393-31216412 | Msa1100800:CDS | 35.0% |
| !! | TTGTTAGTTTGCGGTTCAAT+TGG | - | chr7_3:31216546-31216565 | None:intergenic | 35.0% |
| AACTTTAAACCGTTTGAACC+GGG | - | chr7_3:31216612-31216631 | None:intergenic | 35.0% | |
| CAACTTTAAACCGTTTGAAC+CGG | - | chr7_3:31216613-31216632 | None:intergenic | 35.0% | |
| AAAGTTGTTGAATCACGACT+TGG | + | chr7_3:31216626-31216645 | Msa1100800:three_prime_UTR | 35.0% | |
| ! | ACAAGAGGTACAATTGACAT+AGG | - | chr7_3:31217224-31217243 | None:intergenic | 35.0% |
| TGTGGAAATGGAAAGGGAAT+TGG | - | chr7_3:31214692-31214711 | None:intergenic | 40.0% | |
| TCCACAAACAACTCCTTTCA+AGG | + | chr7_3:31214706-31214725 | Msa1100800:five_prime_UTR | 40.0% | |
| ACCTTGAAAGGAGTTGTTTG+TGG | - | chr7_3:31214710-31214729 | None:intergenic | 40.0% | |
| AGCTCATGCATACAACACAT+TGG | + | chr7_3:31215038-31215057 | Msa1100800:intron | 40.0% | |
| TACAACACATTGGTCATCGT+TGG | + | chr7_3:31215048-31215067 | Msa1100800:intron | 40.0% | |
| AGCACTGCACTATTCAACAA+TGG | + | chr7_3:31215397-31215416 | Msa1100800:CDS | 40.0% | |
| CACATTGCTCAATATAGAGC+AGG | + | chr7_3:31215577-31215596 | Msa1100800:CDS | 40.0% | |
| TTGTACCTGTAGCTTACAGA+AGG | + | chr7_3:31215602-31215621 | Msa1100800:CDS | 40.0% | |
| AGTTACCTTCTGTAAGCTAC+AGG | - | chr7_3:31215610-31215629 | None:intergenic | 40.0% | |
| !!! | TGTGTGTGTGCTTGGTTTTA+GGG | - | chr7_3:31216120-31216139 | None:intergenic | 40.0% |
| GTACTTGTCACAAATGTTGG+AGG | + | chr7_3:31216252-31216271 | Msa1100800:CDS | 40.0% | |
| ! | CCTTCGACATTGTTAGTTTG+CGG | - | chr7_3:31216555-31216574 | None:intergenic | 40.0% |
| ! | TTCTTTTAACCGTTCAACCG+TGG | + | chr7_3:31216580-31216599 | Msa1100800:three_prime_UTR | 40.0% |
| AGCATTTGTAGATGATGTGC+TGG | + | chr7_3:31216891-31216910 | Msa1100800:three_prime_UTR | 40.0% | |
| ! | CAGGTTTGCAAGTTGAAGTT+AGG | - | chr7_3:31217066-31217085 | None:intergenic | 40.0% |
| ! | ACTTGCAAACCTGAAAGTGT+AGG | + | chr7_3:31217073-31217092 | Msa1100800:three_prime_UTR | 40.0% |
| ! | CTTGCAAACCTGAAAGTGTA+GGG | + | chr7_3:31217074-31217093 | Msa1100800:three_prime_UTR | 40.0% |
| ! | TTGCAAACCTGAAAGTGTAG+GGG | + | chr7_3:31217075-31217094 | Msa1100800:three_prime_UTR | 40.0% |
| GGTTCAAGAGAGAACAAACA+AGG | - | chr7_3:31217122-31217141 | None:intergenic | 40.0% | |
| ACTGACACACTTGAGCTGTT+GGG | - | chr7_3:31214625-31214644 | None:intergenic | 45.0% | |
| AACTGACACACTTGAGCTGT+TGG | - | chr7_3:31214626-31214645 | None:intergenic | 45.0% | |
| GTTTCTCATGTAAATGGCCG+TGG | + | chr7_3:31214865-31214884 | Msa1100800:CDS | 45.0% | |
| !! | GCTCATGCTACTTTCTATGG+TGG | + | chr7_3:31214910-31214929 | Msa1100800:CDS | 45.0% |
| ! | TATGGTGGAAGTGATGCTTC+TGG | + | chr7_3:31214925-31214944 | Msa1100800:CDS | 45.0% |
| ! | ATGGTGGAAGTGATGCTTCT+GGG | + | chr7_3:31214926-31214945 | Msa1100800:CDS | 45.0% |
| !! | AAGTGATGCTTCTGGGACAA+TGG | + | chr7_3:31214933-31214952 | Msa1100800:CDS | 45.0% |
| !! | AGTGATGCTTCTGGGACAAT+GGG | + | chr7_3:31214934-31214953 | Msa1100800:CDS | 45.0% |
| TATGCATGAGCTTGTGACTC+TGG | - | chr7_3:31215030-31215049 | None:intergenic | 45.0% | |
| ! | TCTTTTATAGGTGGGGCTTG+TGG | + | chr7_3:31215325-31215344 | Msa1100800:intron | 45.0% |
| GATCCACAATGGTGTAATCC+TGG | + | chr7_3:31215460-31215479 | Msa1100800:CDS | 45.0% | |
| GATCCAGGATTACACCATTG+TGG | - | chr7_3:31215466-31215485 | None:intergenic | 45.0% | |
| !! | GTGTGTGTGTGCTTGGTTTT+AGG | - | chr7_3:31216121-31216140 | None:intergenic | 45.0% |
| GACTATAGTGTGTGTGTGCT+TGG | - | chr7_3:31216128-31216147 | None:intergenic | 45.0% | |
| ! | TGCTGGTGATGTACATTCTG+TGG | + | chr7_3:31216275-31216294 | Msa1100800:CDS | 45.0% |
| GTACATTCTGTGGCCATCAA+AGG | + | chr7_3:31216285-31216304 | Msa1100800:CDS | 45.0% | |
| GCAAGCCATGTCAAGGAATT+GGG | + | chr7_3:31216323-31216342 | Msa1100800:CDS | 45.0% | |
| CAAGCCATGTCAAGGAATTG+GGG | + | chr7_3:31216324-31216343 | Msa1100800:CDS | 45.0% | |
| AAGCCATGTCAAGGAATTGG+GGG | + | chr7_3:31216325-31216344 | Msa1100800:CDS | 45.0% | |
| CAAGGAATTGGGGGCAAAAT+TGG | + | chr7_3:31216334-31216353 | Msa1100800:CDS | 45.0% | |
| CACACTGTGACCATTACTTG+TGG | - | chr7_3:31216406-31216425 | None:intergenic | 45.0% | |
| CACAAGTAATGGTCACAGTG+TGG | + | chr7_3:31216404-31216423 | Msa1100800:CDS | 45.0% | |
| ! | TCTTTTGGTCAGACCTACAC+TGG | + | chr7_3:31216456-31216475 | Msa1100800:CDS | 45.0% |
| CCGCAAACTAACAATGTCGA+AGG | + | chr7_3:31216552-31216571 | Msa1100800:three_prime_UTR | 45.0% | |
| !! | TCACGACTTGGAAGTTTTGC+TGG | + | chr7_3:31216638-31216657 | Msa1100800:three_prime_UTR | 45.0% |
| GTGTTGGGCTACTTAGAAGA+TGG | + | chr7_3:31216787-31216806 | Msa1100800:three_prime_UTR | 45.0% | |
| ! | GTTTCTCATTTGCTGAGGCA+TGG | - | chr7_3:31216928-31216947 | None:intergenic | 45.0% |
| ! | GGCAAGTTTCTCATTTGCTG+AGG | - | chr7_3:31216933-31216952 | None:intergenic | 45.0% |
| !! | CAAAATATATATAATAAAAA+AGG | - | chr7_3:31216849-31216868 | None:intergenic | 5.0% |
| TCTCATGTAAATGGCCGTGG+TGG | + | chr7_3:31214868-31214887 | Msa1100800:CDS | 50.0% | |
| CGATCCAACGACTACTGATG+TGG | + | chr7_3:31215160-31215179 | Msa1100800:intron | 50.0% | |
| GTCACCACATCAGTAGTCGT+TGG | - | chr7_3:31215167-31215186 | None:intergenic | 50.0% | |
| ATAGGTGGGGCTTGTGGATA+TGG | + | chr7_3:31215331-31215350 | Msa1100800:intron | 50.0% | |
| ACCAGGTGGACAGAAATTGG+TGG | - | chr7_3:31215503-31215522 | None:intergenic | 50.0% | |
| ACCAATTTCTGTCCACCTGG+TGG | + | chr7_3:31215502-31215521 | Msa1100800:CDS | 50.0% | |
| ACCACCAGGTGGACAGAAAT+TGG | - | chr7_3:31215506-31215525 | None:intergenic | 50.0% | |
| ATTTCTGTCCACCTGGTGGT+TGG | + | chr7_3:31215506-31215525 | Msa1100800:CDS | 50.0% | |
| AGGGTGAGATGCAAGAGAAG+AGG | + | chr7_3:31216186-31216205 | Msa1100800:intron | 50.0% | |
| GTGAGATGCAAGAGAAGAGG+TGG | + | chr7_3:31216189-31216208 | Msa1100800:CDS | 50.0% | |
| ! | GTCACAAATGTTGGAGGTGC+TGG | + | chr7_3:31216258-31216277 | Msa1100800:CDS | 50.0% |
| CTAGATGGCAAGCCATGTCA+AGG | + | chr7_3:31216316-31216335 | Msa1100800:CDS | 50.0% | |
| GGCAAGCCATGTCAAGGAAT+TGG | + | chr7_3:31216322-31216341 | Msa1100800:CDS | 50.0% | |
| TTGCCCCCAATTCCTTGACA+TGG | - | chr7_3:31216331-31216350 | None:intergenic | 50.0% | |
| TCATTCAATGCTGCTCCTGC+TGG | + | chr7_3:31216429-31216448 | Msa1100800:CDS | 50.0% | |
| TGACCAAAAGACCATCCAGC+AGG | - | chr7_3:31216447-31216466 | None:intergenic | 50.0% | |
| TTGGTCAGACCTACACTGGA+AGG | + | chr7_3:31216460-31216479 | Msa1100800:CDS | 50.0% | |
| GTTGAACTGCCTTCCAGTGT+AGG | - | chr7_3:31216472-31216491 | None:intergenic | 50.0% | |
| TTTGAACCGGGACGAAACCA+CGG | - | chr7_3:31216600-31216619 | None:intergenic | 50.0% | |
| TGGTTTCGTCCCGGTTCAAA+CGG | + | chr7_3:31216600-31216619 | Msa1100800:three_prime_UTR | 50.0% | |
| GTAGTGTCCCCTACACTTTC+AGG | - | chr7_3:31217085-31217104 | None:intergenic | 50.0% | |
| TCCAGCTAGCATGACCACCA+CGG | - | chr7_3:31214885-31214904 | None:intergenic | 55.0% | |
| GCCACCAATTTCTGTCCACC+TGG | + | chr7_3:31215499-31215518 | Msa1100800:CDS | 55.0% | |
| TCAATGCTGCTCCTGCTGGA+TGG | + | chr7_3:31216433-31216452 | Msa1100800:CDS | 55.0% | |
| ! | GCTCCTGCTGGATGGTCTTT+TGG | + | chr7_3:31216441-31216460 | Msa1100800:CDS | 55.0% |
| GGGACGAAACCACGGTTGAA+CGG | - | chr7_3:31216592-31216611 | None:intergenic | 55.0% | |
| GTTCAACCGTGGTTTCGTCC+CGG | + | chr7_3:31216591-31216610 | Msa1100800:three_prime_UTR | 55.0% | |
| GCCGTGGTGGTCATGCTAGC+TGG | + | chr7_3:31214881-31214900 | Msa1100800:CDS | 65.0% | |
| GGGTCACACCAACCACCAGG+TGG | - | chr7_3:31215517-31215536 | None:intergenic | 65.0% | |
| GGAGGGTCACACCAACCACC+AGG | - | chr7_3:31215520-31215539 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 31214604 | 31217333 | 31214604 | ID=Msa1100800;Name=Msa1100800 |
| chr7_3 | mRNA | 31214604 | 31217333 | 31214604 | ID=Msa1100800-mRNA-1;Parent=Msa1100800;Name=Msa1100800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=129|1|1|1|0.66|0.5|4|836|242 |
| chr7_3 | exon | 31214604 | 31214727 | 31214604 | ID=Msa1100800-mRNA-1:exon:6610;Parent=Msa1100800-mRNA-1 |
| chr7_3 | exon | 31214821 | 31214955 | 31214821 | ID=Msa1100800-mRNA-1:exon:6611;Parent=Msa1100800-mRNA-1 |
| chr7_3 | exon | 31215335 | 31215623 | 31215335 | ID=Msa1100800-mRNA-1:exon:6612;Parent=Msa1100800-mRNA-1 |
| chr7_3 | exon | 31216188 | 31217333 | 31216188 | ID=Msa1100800-mRNA-1:exon:6613;Parent=Msa1100800-mRNA-1 |
| chr7_3 | five_prime_UTR | 31214604 | 31214727 | 31214604 | ID=Msa1100800-mRNA-1:five_prime_utr;Parent=Msa1100800-mRNA-1 |
| chr7_3 | five_prime_UTR | 31214821 | 31214825 | 31214821 | ID=Msa1100800-mRNA-1:five_prime_utr;Parent=Msa1100800-mRNA-1 |
| chr7_3 | CDS | 31214826 | 31214955 | 31214826 | ID=Msa1100800-mRNA-1:cds;Parent=Msa1100800-mRNA-1 |
| chr7_3 | CDS | 31215335 | 31215623 | 31215335 | ID=Msa1100800-mRNA-1:cds;Parent=Msa1100800-mRNA-1 |
| chr7_3 | CDS | 31216188 | 31216497 | 31216188 | ID=Msa1100800-mRNA-1:cds;Parent=Msa1100800-mRNA-1 |
| chr7_3 | three_prime_UTR | 31216498 | 31217333 | 31216498 | ID=Msa1100800-mRNA-1:three_prime_utr;Parent=Msa1100800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
