AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0513160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513160 MtrunA17_Chr3g0119371 96.762 525 7 2 1 515 1 525 0.0 1060
Msa0513160 MtrunA17_Chr5g0439311 80.435 506 87 4 21 515 12 516 0.0 856
Msa0513160 MtrunA17_Chr8g0388051 60.730 466 171 3 40 495 28 491 0.0 608
Msa0513160 MtrunA17_Chr4g0038131 59.402 468 177 5 39 495 27 492 0.0 573
Msa0513160 MtrunA17_Chr5g0444721 69.859 355 101 2 147 495 210 564 0.0 528
Msa0513160 MtrunA17_Chr5g0444721 74.016 127 33 0 22 148 16 142 1.41e-59 206
Msa0513160 MtrunA17_Chr1g0164201 49.587 484 222 8 23 493 5 479 1.53e-159 462
Msa0513160 MtrunA17_Chr5g0397201 48.626 473 224 6 36 500 36 497 3.34e-151 442
Msa0513160 MtrunA17_Chr1g0195271 48.354 486 227 8 15 493 26 494 1.65e-148 435
Msa0513160 MtrunA17_Chr8g0391391 48.712 466 224 8 40 495 30 490 3.08e-148 434
Msa0513160 MtrunA17_Chr3g0119821 48.276 464 227 7 40 495 35 493 2.46e-147 431
Msa0513160 MtrunA17_Chr3g0145261 47.854 466 230 7 40 496 24 485 9.52e-146 427
Msa0513160 MtrunA17_Chr3g0086311 45.918 490 241 6 23 499 5 483 8.55e-140 412
Msa0513160 MtrunA17_Chr4g0018301 44.186 473 249 6 31 497 36 499 8.28e-138 407
Msa0513160 MtrunA17_Chr3g0080171 46.336 464 233 6 40 495 25 480 1.10e-136 404
Msa0513160 MtrunA17_Chr4g0018361 44.919 492 241 11 25 495 7 489 8.67e-132 392
Msa0513160 MtrunA17_Chr3g0142501 42.463 471 247 11 41 496 58 519 6.15e-119 360
Msa0513160 MtrunA17_Chr5g0397181 45.545 404 201 6 101 496 1 393 3.37e-118 353
Msa0513160 MtrunA17_Chr8g0372031 42.161 472 247 11 41 496 64 525 1.41e-114 349
Msa0513160 MtrunA17_Chr3g0136381 46.322 367 182 4 31 392 21 377 8.46e-110 333
Msa0513160 MtrunA17_Chr2g0291461 41.096 511 248 16 40 513 111 605 5.35e-101 317
Msa0513160 MtrunA17_Chr3g0126111 35.556 540 271 16 19 500 68 588 2.96e-90 288
Msa0513160 MtrunA17_Chr3g0120661 38.066 486 255 14 40 492 116 588 4.89e-90 288
Msa0513160 MtrunA17_Chr4g0018341 40.070 287 154 6 215 495 2 276 5.10e-66 215
Msa0513160 MtrunA17_Chr4g0018351 53.261 184 79 2 38 216 28 209 2.35e-59 195
Msa0513160 MtrunA17_Chr1g0164181 51.351 185 84 2 82 261 3 186 2.28e-48 170
Msa0513160 MtrunA17_Chr1g0164181 47.205 161 84 1 333 493 170 329 1.68e-47 167
Msa0513160 MtrunA17_Chr7g0269571 44.578 166 80 2 339 493 43 207 2.12e-42 151
Msa0513160 MtrunA17_Chr4g0022271 43.571 140 74 1 339 478 20 154 1.53e-33 125
Msa0513160 MtrunA17_Chr4g0072811 40.541 148 83 4 346 492 19 162 7.57e-28 110
Msa0513160 MtrunA17_Chr3g0136371 46.739 92 48 1 392 483 1 91 5.53e-23 93.6
Msa0513160 MtrunA17_Chr5g0397171 59.524 42 17 0 39 80 40 81 1.12e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0513160 AT2G32990.1 73.225 493 112 3 22 494 11 503 0.0 758
Msa0513160 AT1G64390.1 61.159 466 169 3 40 495 25 488 0.0 600
Msa0513160 AT4G11050.3 59.957 467 175 3 40 496 26 490 0.0 589
Msa0513160 AT4G11050.1 59.957 467 175 3 40 496 26 490 0.0 588
Msa0513160 AT4G11050.2 59.957 467 175 3 40 496 26 490 0.0 586
Msa0513160 AT1G48930.1 57.082 466 188 4 39 494 29 492 0.0 525
Msa0513160 AT2G44550.1 50.522 479 218 6 25 493 18 487 1.34e-160 465
Msa0513160 AT2G44540.1 50.000 482 221 7 22 493 17 488 1.60e-156 455
Msa0513160 AT2G44560.1 50.417 480 219 7 24 493 18 488 8.76e-154 448
Msa0513160 AT2G44570.1 47.412 483 235 7 24 495 17 491 3.93e-152 444
Msa0513160 AT4G02290.1 49.892 463 220 7 40 495 52 509 1.69e-147 433
Msa0513160 AT1G02800.1 50.542 461 214 7 40 493 43 496 4.60e-147 431
Msa0513160 AT1G70710.1 46.764 479 243 7 24 495 12 485 1.71e-145 427
Msa0513160 AT4G23560.1 47.401 481 233 7 24 496 7 475 1.66e-144 424
Msa0513160 AT4G09740.1 47.401 481 233 7 24 496 7 475 1.96e-144 424
Msa0513160 AT4G39010.1 47.109 467 231 9 40 495 29 490 3.84e-143 421
Msa0513160 AT1G23210.1 46.868 463 234 7 40 495 28 485 1.88e-139 411
Msa0513160 AT3G43860.2 45.378 476 243 6 26 495 19 483 1.97e-137 406
Msa0513160 AT3G43860.1 45.378 476 243 6 26 495 19 483 1.97e-137 406
Msa0513160 AT1G22880.1 46.250 480 241 9 24 495 8 478 7.02e-137 405
Msa0513160 AT1G71380.1 45.455 484 242 11 24 495 5 478 1.53e-135 401
Msa0513160 AT4G39000.1 45.975 472 239 9 40 500 25 491 1.48e-132 394
Msa0513160 AT1G19940.2 46.753 462 226 9 40 490 48 500 8.32e-132 393
Msa0513160 AT1G19940.1 46.753 462 226 9 40 490 48 500 8.32e-132 393
Msa0513160 AT1G75680.1 46.608 457 224 9 41 486 58 505 3.41e-126 379
Msa0513160 AT4G38990.2 43.416 486 256 10 25 495 8 489 1.98e-123 370
Msa0513160 AT4G02290.2 47.264 402 200 7 101 495 1 397 2.62e-114 344
Msa0513160 AT1G22880.2 44.417 403 207 9 101 495 1 394 5.19e-109 330
Msa0513160 AT2G44570.2 44.557 395 200 7 24 407 17 403 3.68e-107 326
Msa0513160 AT4G39010.2 46.281 363 180 8 40 391 29 387 1.66e-105 321
Msa0513160 AT5G49720.1 41.633 490 235 16 40 492 108 583 1.68e-95 302
Msa0513160 AT1G19940.3 44.780 364 186 7 40 392 48 407 2.44e-93 291
Msa0513160 AT1G65610.1 35.887 496 273 15 40 503 116 598 1.95e-85 276
Msa0513160 AT4G24260.1 40.326 491 246 15 40 495 108 586 1.12e-84 274
Msa0513160 AT4G38990.1 42.655 354 171 7 25 371 8 336 1.33e-79 253
Msa0513160 AT1G22880.3 47.531 324 154 8 24 339 8 323 2.97e-79 251
Msa0513160 AT4G24260.3 38.660 388 196 13 40 392 108 488 4.26e-53 187
Msa0513160 AT4G24260.2 40.483 331 155 11 40 332 108 434 2.84e-51 181

Find 118 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCACAAGTTGATTACATTT+TGG 0.156175 3_4:+63409679 Msa0513160:CDS
AGAACCAAATCCTAATATTT+TGG 0.167708 3_4:+63409853 Msa0513160:CDS
CATACAACCAACGTGTTAAT+TGG 0.167826 3_4:+63406209 Msa0513160:CDS
GAAAATACATTCTTTAAAAT+AGG 0.186741 3_4:-63410133 None:intergenic
AAATATTAGGATTTGGTTCT+TGG 0.200576 3_4:-63409850 None:intergenic
AAAGGTATTTGGTGCAAATT+TGG 0.202827 3_4:-63410270 None:intergenic
ATGTAATGGAAGCAATTAAA+TGG 0.203237 3_4:+63406515 Msa0513160:CDS
AACTCATGTTAAGTGGATTT+TGG 0.205279 3_4:-63409703 None:intergenic
ACCTCTATGATGCACCCTTT+TGG 0.242199 3_4:-63409753 None:intergenic
ATGAGTTACTTAGTGGGATA+TGG 0.273448 3_4:+63409719 Msa0513160:CDS
GCAGGTGATCATGTGAAATT+TGG 0.274678 3_4:+63406406 Msa0513160:CDS
TACTTTGAAGCACAACGTTC+TGG 0.276345 3_4:+63406178 Msa0513160:CDS
ATTGTGCAGTTATTTGAGTT+TGG 0.280930 3_4:+63407799 Msa0513160:intron
AAAATACATTCTTTAAAATA+GGG 0.283671 3_4:-63410132 None:intergenic
TTGTGCAGTTATTTGAGTTT+GGG 0.294397 3_4:+63407800 Msa0513160:intron
CCAACCAAAATATTAGGATT+TGG 0.302553 3_4:-63409857 None:intergenic
ATATATAGAGAGTATTTAAA+AGG 0.306750 3_4:-63410053 None:intergenic
GTTAATTGGCGTCATCATTC+TGG 0.309546 3_4:+63406223 Msa0513160:CDS
AAAGCTCCAACCAAAATATT+AGG 0.310755 3_4:-63409863 None:intergenic
CAGCTGCTTCCATTGTGTTT+AGG 0.320538 3_4:+63407051 Msa0513160:CDS
TCAAAATTGTCTAGATTATC+AGG 0.328331 3_4:-63409896 None:intergenic
AGAGAGAATAAAGGGTTCAT+AGG 0.328810 3_4:+63409794 Msa0513160:CDS
ATTTCTAATGCTCATACATT+TGG 0.331259 3_4:+63407967 Msa0513160:CDS
GCACACAAGGGTATGATAAT+TGG 0.347724 3_4:+63409819 Msa0513160:CDS
CAATTAACACGTTGGTTGTA+TGG 0.354636 3_4:-63406208 None:intergenic
CATGGAGTGCTATTGAGTTT+AGG 0.363527 3_4:+63406461 Msa0513160:CDS
GTGACAATGATGTTTAAATC+TGG 0.367337 3_4:-63406074 None:intergenic
GCTCATACATTTGGTGGTAT+TGG 0.372035 3_4:+63407976 Msa0513160:CDS
TAAATTTGTTAATATTATAG+TGG 0.388889 3_4:+63410174 Msa0513160:three_prime_UTR
TTTCAGGTGGATTTGGTTGG+AGG 0.401221 3_4:+63406373 Msa0513160:intron
TGTAATGGAAGCAATTAAAT+GGG 0.406228 3_4:+63406516 Msa0513160:CDS
CAAAAGATCAATTGCCAAGA+TGG 0.412945 3_4:+63409620 Msa0513160:CDS
GTATCATATAGAGAGAATAA+AGG 0.414088 3_4:+63409785 Msa0513160:CDS
CTGGACGTTGCCAACAATAA+TGG 0.415828 3_4:-63406941 None:intergenic
CTTGAGGTTGTCATGTCCTC+TGG 0.417866 3_4:-63406960 None:intergenic
GTCAAAATATTCTTGTTTGT+CGG 0.429086 3_4:-63407938 None:intergenic
AAGATAGATGAGAAGAATCC+AGG 0.433832 3_4:+63406993 Msa0513160:CDS
TTCAGGTGGATTTGGTTGGA+GGG 0.437613 3_4:+63406374 Msa0513160:intron
TCATGCAAAGAGGGAATAGA+AGG 0.439518 3_4:+63409996 Msa0513160:CDS
ATCCCAGCTGAATTCTGTTA+TGG 0.440268 3_4:-63408004 None:intergenic
ACTTTGAAGCACAACGTTCT+GGG 0.441438 3_4:+63406179 Msa0513160:CDS
GGGAAATATGATGGAAGTGT+TGG 0.451425 3_4:+63407835 Msa0513160:CDS
TATCATATAGAGAGAATAAA+GGG 0.456692 3_4:+63409786 Msa0513160:CDS
TCTAATGCTCATACATTTGG+TGG 0.457457 3_4:+63407970 Msa0513160:CDS
AGCTGGGATGTTAAGTATGC+TGG 0.465855 3_4:+63408018 Msa0513160:CDS
ATGGGCCTAAGTACCCCAAA+AGG 0.469761 3_4:+63409738 Msa0513160:CDS
ATACATTTGGTGGTATTGGT+TGG 0.472675 3_4:+63407980 Msa0513160:CDS
AGGCAAGAAATTGTTGAAGC+TGG 0.479140 3_4:+63406481 Msa0513160:CDS
ACTAAGTAACTCATGTTAAG+TGG 0.486492 3_4:-63409710 None:intergenic
GGTCCATAACAGAATTCAGC+TGG 0.486609 3_4:+63408001 Msa0513160:CDS
CAAAATTGAGAATTTCATCA+TGG 0.490347 3_4:-63409652 None:intergenic
ACTTAACATGAGTTACTTAG+TGG 0.491572 3_4:+63409712 Msa0513160:CDS
TGAGTTACTTAGTGGGATAT+GGG 0.492298 3_4:+63409720 Msa0513160:CDS
TTGGTTGGAGCTTTGGTAGG+AGG 0.493848 3_4:+63409872 Msa0513160:CDS
TGGAGAAACTTCTGCAGCTA+TGG 0.496229 3_4:+63407028 Msa0513160:CDS
CATCATTCTGGTCTTACAGA+TGG 0.500607 3_4:+63406235 Msa0513160:CDS
GAAGAATCCAGGTTCAGATC+TGG 0.506230 3_4:+63407004 Msa0513160:CDS
ATTGTTGAAGCTGGTGAACT+TGG 0.513050 3_4:+63406490 Msa0513160:CDS
CTTACAGATGGTTTAGAACA+AGG 0.516101 3_4:+63406247 Msa0513160:CDS
ATAATCAAAAGATTGTGTTA+TGG 0.516983 3_4:-63406128 None:intergenic
CATGGCCCACAATCCCATCT+TGG 0.517673 3_4:-63409634 None:intergenic
AGCTACTATGCGTCGGTGAG+TGG 0.518978 3_4:+63407868 Msa0513160:CDS
GAGAGAATAAAGGGTTCATA+GGG 0.518983 3_4:+63409795 Msa0513160:CDS
TTGCAAAATTCATGCAAAGA+GGG 0.519154 3_4:+63409987 Msa0513160:CDS
AAAAGATCAATTGCCAAGAT+GGG 0.520703 3_4:+63409621 Msa0513160:CDS
AATTGCCAAGATGGGATTGT+GGG 0.521792 3_4:+63409629 Msa0513160:CDS
ATATAATACTGCACCATTAG+TGG 0.523912 3_4:+63409958 Msa0513160:CDS
AAATACAGAGGGAAATATGA+TGG 0.525154 3_4:+63407826 Msa0513160:CDS
GAGACACAGACCATTATTGT+TGG 0.526224 3_4:+63406931 Msa0513160:CDS
CAAGGGTATGATAATTGGTA+TGG 0.527762 3_4:+63409824 Msa0513160:CDS
TGTGCAGTTATTTGAGTTTG+GGG 0.529149 3_4:+63407801 Msa0513160:intron
TGTGAAATTTGGTTTACCAA+TGG 0.529922 3_4:+63406417 Msa0513160:CDS
AAATACATTCTTTAAAATAG+GGG 0.535983 3_4:-63410131 None:intergenic
AAAATATTCTTGTTTGTCGG+TGG 0.547238 3_4:-63407935 None:intergenic
AAAATTCAAGAAAGAAAGTG+AGG 0.550203 3_4:-63405952 None:intergenic
TTTGCAAAATTCATGCAAAG+AGG 0.550554 3_4:+63409986 Msa0513160:CDS
GATACATGGATGAGTTATTG+TGG 0.552659 3_4:+63407890 Msa0513160:CDS
TATAATACTGCACCATTAGT+GGG 0.560164 3_4:+63409959 Msa0513160:CDS
GTTGGAGGGTACTATGATGC+AGG 0.563279 3_4:+63406388 Msa0513160:CDS
TGACAATGATGTTTAAATCT+GGG 0.565379 3_4:-63406073 None:intergenic
AATACATTCTTTAAAATAGG+GGG 0.565425 3_4:-63410130 None:intergenic
TGCGTCGGTGAGTGGATACA+TGG 0.568122 3_4:+63407876 Msa0513160:CDS
AATGTAATCAACTTGTGACT+TGG 0.573884 3_4:-63409675 None:intergenic
GGGTTCATAGGGTGCACACA+AGG 0.574402 3_4:+63409806 Msa0513160:CDS
TCTCCAGCCAGATCTGAACC+TGG 0.578429 3_4:-63407011 None:intergenic
ATACATGGATGAGTTATTGT+GGG 0.579757 3_4:+63407891 Msa0513160:CDS
TTACTGTCACAATGTTGTCA+TGG 0.583673 3_4:+63406443 Msa0513160:CDS
TACAGATGGTTTAGAACAAG+GGG 0.583836 3_4:+63406249 Msa0513160:CDS
GCAAAGAGGGAATAGAAGGT+TGG 0.590189 3_4:+63410000 Msa0513160:CDS
TATCTTAAAAGCTTGTCTTG+AGG 0.590517 3_4:-63406976 None:intergenic
AGTTATTGTGGGGAGCTATG+TGG 0.591433 3_4:+63407902 Msa0513160:CDS
AATCCAGGTTCAGATCTGGC+TGG 0.593866 3_4:+63407008 Msa0513160:CDS
CTTAACATGAGTTACTTAGT+GGG 0.597597 3_4:+63409713 Msa0513160:CDS
ATTCTCTCTATATGATACAA+TGG 0.597953 3_4:-63409780 None:intergenic
CAATTGCCAAGATGGGATTG+TGG 0.600603 3_4:+63409628 Msa0513160:CDS
ATTGTGACAGTAAATGCCAT+TGG 0.602158 3_4:-63406433 None:intergenic
TGGTGAACTTGGTCATGTAA+TGG 0.602665 3_4:+63406501 Msa0513160:CDS
TGGGCCTAAGTACCCCAAAA+GGG 0.608177 3_4:+63409739 Msa0513160:CDS
CTTACATAGAGTAATCCAGC+TGG 0.611840 3_4:-63409518 None:intergenic
TTACAGATGGTTTAGAACAA+GGG 0.612255 3_4:+63406248 Msa0513160:CDS
AATGTGGAAAGAACACCAGC+TGG 0.616199 3_4:+63409503 Msa0513160:CDS
CCCAAAAGGGTGCATCATAG+AGG 0.625621 3_4:+63409752 Msa0513160:CDS
AGTTTGGGGACAAATACAGA+GGG 0.630720 3_4:+63407815 Msa0513160:CDS
TTACTACTACCTGCTGAGCA+TGG 0.641231 3_4:-63407109 None:intergenic
GTCCATAACAGAATTCAGCT+GGG 0.643895 3_4:+63408002 Msa0513160:CDS
GATGACGCCAATTAACACGT+TGG 0.651812 3_4:-63406216 None:intergenic
TTATTGTTGGCAACGTCCAG+AGG 0.652974 3_4:+63406944 Msa0513160:CDS
AGTGAAGAGCTACTATGCGT+CGG 0.655502 3_4:+63407861 Msa0513160:CDS
AAAAGTAGCTGAGAATAATG+TGG 0.661774 3_4:-63407083 None:intergenic
GAGTTTGGGGACAAATACAG+AGG 0.667296 3_4:+63407814 Msa0513160:CDS
GAACAATTATGTGCAAACTG+AGG 0.668349 3_4:+63409928 Msa0513160:CDS
GTAATGGAAGCAATTAAATG+GGG 0.669304 3_4:+63406517 Msa0513160:CDS
AAACAATGGCAGCAGCAATG+TGG 0.670730 3_4:+63409487 Msa0513160:CDS
GGTTCATAGGGTGCACACAA+GGG 0.675227 3_4:+63409807 Msa0513160:CDS
AAATTCAAGAAAGAAAGTGA+GGG 0.678743 3_4:-63405951 None:intergenic
TTGAAGCACAACGTTCTGGG+AGG 0.691689 3_4:+63406182 Msa0513160:CDS
GATTACTCTATGTAAGACAG+TGG 0.704386 3_4:+63409525 Msa0513160:CDS
TACATGGATGAGTTATTGTG+GGG 0.766782 3_4:+63407892 Msa0513160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAATAATTTATTATGTT+TGG + chr3_4:63407196-63407215 Msa0513160:intron 10.0%
!!! TACTAATATTTTTACTTAAT+TGG - chr3_4:63407698-63407717 None:intergenic 10.0%
!!! AAAATACATTCTTTAAAATA+GGG - chr3_4:63410135-63410154 None:intergenic 10.0%
!!! TAAATTTGTTAATATTATAG+TGG + chr3_4:63410174-63410193 Msa0513160:three_prime_UTR 10.0%
!!! AAAGTTGAGATTTTTATTTT+TGG + chr3_4:63406340-63406359 Msa0513160:intron 15.0%
!!! AAGTTGAGATTTTTATTTTT+GGG + chr3_4:63406341-63406360 Msa0513160:intron 15.0%
!! TATTAAAGTATGTAAAACAA+GGG + chr3_4:63407274-63407293 Msa0513160:intron 15.0%
!!! TTTTGATTGTGTTTTTTTTT+TGG + chr3_4:63407379-63407398 Msa0513160:intron 15.0%
!! TAAAATACAAACAAAACAAA+AGG + chr3_4:63408064-63408083 Msa0513160:intron 15.0%
!! AAAATACAAACAAAACAAAA+GGG + chr3_4:63408065-63408084 Msa0513160:intron 15.0%
!!! TATCATTTTATTTGATTTGA+TGG + chr3_4:63408369-63408388 Msa0513160:intron 15.0%
!!! ATATATAGAGAGTATTTAAA+AGG - chr3_4:63410056-63410075 None:intergenic 15.0%
!!! AAATACATTCTTTAAAATAG+GGG - chr3_4:63410134-63410153 None:intergenic 15.0%
!!! GAAAATACATTCTTTAAAAT+AGG - chr3_4:63410136-63410155 None:intergenic 15.0%
!!! AAAAAAACTTGGTACTTTTT+AGG - chr3_4:63405987-63406006 None:intergenic 20.0%
!!! AAAAGTACCAAGTTTTTTTT+AGG + chr3_4:63405988-63406007 Msa0513160:five_prime_UTR 20.0%
!! ATAATCAAAAGATTGTGTTA+TGG - chr3_4:63406131-63406150 None:intergenic 20.0%
!!! TTTCATTTTCTTGATTTTGA+TGG + chr3_4:63406293-63406312 Msa0513160:intron 20.0%
!!! GAAACAAAATTCTGAAATTA+AGG + chr3_4:63406886-63406905 Msa0513160:intron 20.0%
!!! GAAATTAAGGTTTTTTACTT+AGG + chr3_4:63406899-63406918 Msa0513160:intron 20.0%
!! GTATTAAAGTATGTAAAACA+AGG + chr3_4:63407273-63407292 Msa0513160:intron 20.0%
!!! AAGATTGTAAATAGCTATTT+TGG + chr3_4:63407298-63407317 Msa0513160:intron 20.0%
!!! ACTACAGTAAATAGTTATTT+TGG - chr3_4:63407555-63407574 None:intergenic 20.0%
!!! TACTACACTATCAATTTTAA+AGG + chr3_4:63407628-63407647 Msa0513160:intron 20.0%
!!! TTCAAACATGTCAATTTTAT+AGG + chr3_4:63408142-63408161 Msa0513160:intron 20.0%
!!! TTCTAGTATTTTATTTGTGT+TGG + chr3_4:63408213-63408232 Msa0513160:intron 20.0%
!! TGAAGTCAAAAATAAAATGA+TGG + chr3_4:63408295-63408314 Msa0513160:intron 20.0%
!! GAAGTCAAAAATAAAATGAT+GGG + chr3_4:63408296-63408315 Msa0513160:intron 20.0%
!!! ACTTTTGAAACTAAAGTAAA+AGG - chr3_4:63408345-63408364 None:intergenic 20.0%
!! GACTATATAGCTAATATAAA+TGG + chr3_4:63408565-63408584 Msa0513160:intron 20.0%
!! TTTAGAAGAAGAAAATTTCA+GGG + chr3_4:63409001-63409020 Msa0513160:intron 20.0%
!! AAAAATAACAAATGGATCAA+GGG - chr3_4:63409109-63409128 None:intergenic 20.0%
!! AAAAAATAACAAATGGATCA+AGG - chr3_4:63409110-63409129 None:intergenic 20.0%
!!! TTGATCCATTTGTTATTTTT+TGG + chr3_4:63409109-63409128 Msa0513160:intron 20.0%
!! ACTATCCAAAAAATAACAAA+TGG - chr3_4:63409117-63409136 None:intergenic 20.0%
!!! ATTTGTTATTTTTTGGATAG+TGG + chr3_4:63409116-63409135 Msa0513160:intron 20.0%
!!! TTTGTTATTTTTTGGATAGT+GGG + chr3_4:63409117-63409136 Msa0513160:intron 20.0%
!! AAAAGAACAACAAATATTTC+TGG + chr3_4:63409224-63409243 Msa0513160:intron 20.0%
!!! TACTAGTAAACTTTTACATA+AGG - chr3_4:63409324-63409343 None:intergenic 20.0%
!! TATCATATAGAGAGAATAAA+GGG + chr3_4:63409786-63409805 Msa0513160:CDS 20.0%
!!! AATACATTCTTTAAAATAGG+GGG - chr3_4:63410133-63410152 None:intergenic 20.0%
! AAATTCAAGAAAGAAAGTGA+GGG - chr3_4:63405954-63405973 None:intergenic 25.0%
! AAAATTCAAGAAAGAAAGTG+AGG - chr3_4:63405955-63405974 None:intergenic 25.0%
! TGACAATGATGTTTAAATCT+GGG - chr3_4:63406076-63406095 None:intergenic 25.0%
!! ATGTAATGGAAGCAATTAAA+TGG + chr3_4:63406515-63406534 Msa0513160:CDS 25.0%
!! TGTAATGGAAGCAATTAAAT+GGG + chr3_4:63406516-63406535 Msa0513160:CDS 25.0%
!!! ATTAAGGTTTTTTACTTAGG+TGG + chr3_4:63406902-63406921 Msa0513160:intron 25.0%
!!! TTAAGGTTTTTTACTTAGGT+GGG + chr3_4:63406903-63406922 Msa0513160:intron 25.0%
!!! ATTTGTTTTCCTAAACACAA+TGG - chr3_4:63407063-63407082 None:intergenic 25.0%
! TACTTGTCTCTTAAAGTTAA+AGG - chr3_4:63407256-63407275 None:intergenic 25.0%
! TGACTAACAAAACATATAAC+AGG - chr3_4:63407433-63407452 None:intergenic 25.0%
!!! TTGGAATTTTGACATATTCA+TGG + chr3_4:63407497-63407516 Msa0513160:intron 25.0%
!!! TCAATTTTAAAGGCAAATAG+TGG + chr3_4:63407638-63407657 Msa0513160:intron 25.0%
!!! CAATTTTAAAGGCAAATAGT+GGG + chr3_4:63407639-63407658 Msa0513160:intron 25.0%
!!! AATTTTAAAGGCAAATAGTG+GGG + chr3_4:63407640-63407659 Msa0513160:intron 25.0%
!! GTCAAAATATTCTTGTTTGT+CGG - chr3_4:63407941-63407960 None:intergenic 25.0%
! ATTTCTAATGCTCATACATT+TGG + chr3_4:63407967-63407986 Msa0513160:CDS 25.0%
! AGACAAAAAAGAGTGATTAA+AGG - chr3_4:63408094-63408113 None:intergenic 25.0%
! ATCTAAGGGATATTGTTAAT+AGG + chr3_4:63408398-63408417 Msa0513160:intron 25.0%
!! TATATAGTCTATTCTTTTGG+AGG - chr3_4:63408554-63408573 None:intergenic 25.0%
!! AGCTATATAGTCTATTCTTT+TGG - chr3_4:63408557-63408576 None:intergenic 25.0%
! AGAATAGTCATTGGTAAATA+AGG - chr3_4:63408970-63408989 None:intergenic 25.0%
! TGCATATATAGAATAGTCAT+TGG - chr3_4:63408979-63408998 None:intergenic 25.0%
! GTTTAGAAGAAGAAAATTTC+AGG + chr3_4:63409000-63409019 Msa0513160:intron 25.0%
! TTTCTTAAAGCCCAAAATAA+AGG - chr3_4:63409143-63409162 None:intergenic 25.0%
!!! TGTTGTTCTTTTAGAAATGT+GGG - chr3_4:63409216-63409235 None:intergenic 25.0%
!!! TTGTTGTTCTTTTAGAAATG+TGG - chr3_4:63409217-63409236 None:intergenic 25.0%
!! ATGTACATTTGAAGTGATAT+TGG + chr3_4:63409281-63409300 Msa0513160:intron 25.0%
!! TGTACATTTGAAGTGATATT+GGG + chr3_4:63409282-63409301 Msa0513160:intron 25.0%
!! GTAACTTTTGTAGTTTTTGA+TGG + chr3_4:63409382-63409401 Msa0513160:intron 25.0%
! CAAAATTGAGAATTTCATCA+TGG - chr3_4:63409655-63409674 None:intergenic 25.0%
!!! TCACAAGTTGATTACATTTT+GGG + chr3_4:63409680-63409699 Msa0513160:CDS 25.0%
! ATTCTCTCTATATGATACAA+TGG - chr3_4:63409783-63409802 None:intergenic 25.0%
! GTATCATATAGAGAGAATAA+AGG + chr3_4:63409785-63409804 Msa0513160:CDS 25.0%
!!! AAATATTAGGATTTGGTTCT+TGG - chr3_4:63409853-63409872 None:intergenic 25.0%
!! AGAACCAAATCCTAATATTT+TGG + chr3_4:63409853-63409872 Msa0513160:CDS 25.0%
! TCAAAATTGTCTAGATTATC+AGG - chr3_4:63409899-63409918 None:intergenic 25.0%
!! TGATAATCTAGACAATTTTG+AGG + chr3_4:63409898-63409917 Msa0513160:CDS 25.0%
!!! AGTACCAAGTTTTTTTTAGG+AGG + chr3_4:63405991-63406010 Msa0513160:five_prime_UTR 30.0%
!!! GTACCAAGTTTTTTTTAGGA+GGG + chr3_4:63405992-63406011 Msa0513160:five_prime_UTR 30.0%
GTGACAATGATGTTTAAATC+TGG - chr3_4:63406077-63406096 None:intergenic 30.0%
! TTACAGATGGTTTAGAACAA+GGG + chr3_4:63406248-63406267 Msa0513160:CDS 30.0%
!!! TTTTGGGTTTGTGTTTTTTC+AGG + chr3_4:63406357-63406376 Msa0513160:intron 30.0%
! TGTGAAATTTGGTTTACCAA+TGG + chr3_4:63406417-63406436 Msa0513160:CDS 30.0%
! GTAATGGAAGCAATTAAATG+GGG + chr3_4:63406517-63406536 Msa0513160:CDS 30.0%
TCTCAAATTATTAGCAGTGT+GGG - chr3_4:63406660-63406679 None:intergenic 30.0%
TTCTCAAATTATTAGCAGTG+TGG - chr3_4:63406661-63406680 None:intergenic 30.0%
! TTTCCAATTTTTGAACTTCC+TGG + chr3_4:63406838-63406857 Msa0513160:intron 30.0%
TATCTTAAAAGCTTGTCTTG+AGG - chr3_4:63406979-63406998 None:intergenic 30.0%
AAAAGTAGCTGAGAATAATG+TGG - chr3_4:63407086-63407105 None:intergenic 30.0%
GTGAATATAGCACAATTTAG+AGG - chr3_4:63407135-63407154 None:intergenic 30.0%
TTGTGCTATATTCACTATAG+TGG + chr3_4:63407140-63407159 Msa0513160:intron 30.0%
! AAGGTGCTTAAAAATGAAGT+GGG - chr3_4:63407237-63407256 None:intergenic 30.0%
!! AAAGGTGCTTAAAAATGAAG+TGG - chr3_4:63407238-63407257 None:intergenic 30.0%
CTCTTTGATTAGTAATCTCA+TGG - chr3_4:63407463-63407482 None:intergenic 30.0%
ATTATGCATTCACACTTATC+AGG - chr3_4:63407592-63407611 None:intergenic 30.0%
! ATTGTGCAGTTATTTGAGTT+TGG + chr3_4:63407799-63407818 Msa0513160:intron 30.0%
! TTGTGCAGTTATTTGAGTTT+GGG + chr3_4:63407800-63407819 Msa0513160:intron 30.0%
AAATACAGAGGGAAATATGA+TGG + chr3_4:63407826-63407845 Msa0513160:CDS 30.0%
ATACATGGATGAGTTATTGT+GGG + chr3_4:63407891-63407910 Msa0513160:CDS 30.0%
! AAAATATTCTTGTTTGTCGG+TGG - chr3_4:63407938-63407957 None:intergenic 30.0%
TTACCTTTGATGCTAAAACT+TGG - chr3_4:63408047-63408066 None:intergenic 30.0%
!!! TGTTGGTTTTCCTTTTTCAA+TGG + chr3_4:63408230-63408249 Msa0513160:intron 30.0%
GAGAAATAAGCCATTGAAAA+AGG - chr3_4:63408243-63408262 None:intergenic 30.0%
! ATGTTAGTAAAGCATTATGC+AGG - chr3_4:63408276-63408295 None:intergenic 30.0%
! GATGGGTTTAAGACTTAATT+TGG + chr3_4:63408313-63408332 Msa0513160:intron 30.0%
ATTTGATGGAGCAATATCTA+AGG + chr3_4:63408383-63408402 Msa0513160:intron 30.0%
TTTGATGGAGCAATATCTAA+GGG + chr3_4:63408384-63408403 Msa0513160:intron 30.0%
CTATCACAGTTCAATTAAAG+TGG + chr3_4:63408477-63408496 Msa0513160:intron 30.0%
ACCATTGAAACTTCAACATT+TGG - chr3_4:63408521-63408540 None:intergenic 30.0%
! ACCCTTTTTATGTTTTCTTC+AGG + chr3_4:63408870-63408889 Msa0513160:intron 30.0%
CCCTGAAGAAAACATAAAAA+GGG - chr3_4:63408874-63408893 None:intergenic 30.0%
! CCCTTTTTATGTTTTCTTCA+GGG + chr3_4:63408871-63408890 Msa0513160:intron 30.0%
ACCCTGAAGAAAACATAAAA+AGG - chr3_4:63408875-63408894 None:intergenic 30.0%
TAATGCACAATGATTGATAG+TGG + chr3_4:63409044-63409063 Msa0513160:intron 30.0%
!! TATTTCTGGAAATGTACTTC+TGG + chr3_4:63409238-63409257 Msa0513160:intron 30.0%
TCATGTCTCAACAAAAACAA+TGG + chr3_4:63409473-63409492 Msa0513160:CDS 30.0%
!! TGATCTTTTGATTCTCACTT+TGG - chr3_4:63409610-63409629 None:intergenic 30.0%
AAAAGATCAATTGCCAAGAT+GGG + chr3_4:63409621-63409640 Msa0513160:CDS 30.0%
AATGTAATCAACTTGTGACT+TGG - chr3_4:63409678-63409697 None:intergenic 30.0%
!!! GTCACAAGTTGATTACATTT+TGG + chr3_4:63409679-63409698 Msa0513160:CDS 30.0%
!! AACTCATGTTAAGTGGATTT+TGG - chr3_4:63409706-63409725 None:intergenic 30.0%
ACTAAGTAACTCATGTTAAG+TGG - chr3_4:63409713-63409732 None:intergenic 30.0%
ACTTAACATGAGTTACTTAG+TGG + chr3_4:63409712-63409731 Msa0513160:CDS 30.0%
CTTAACATGAGTTACTTAGT+GGG + chr3_4:63409713-63409732 Msa0513160:CDS 30.0%
CCAACCAAAATATTAGGATT+TGG - chr3_4:63409860-63409879 None:intergenic 30.0%
!!! CCAAATCCTAATATTTTGGT+TGG + chr3_4:63409857-63409876 Msa0513160:CDS 30.0%
AAAGCTCCAACCAAAATATT+AGG - chr3_4:63409866-63409885 None:intergenic 30.0%
!!! TAATATTTTGGTTGGAGCTT+TGG + chr3_4:63409865-63409884 Msa0513160:CDS 30.0%
!! TAGACAATTTTGAGGATCAA+AGG + chr3_4:63409906-63409925 Msa0513160:CDS 30.0%
ATATAATACTGCACCATTAG+TGG + chr3_4:63409958-63409977 Msa0513160:CDS 30.0%
TATAATACTGCACCATTAGT+GGG + chr3_4:63409959-63409978 Msa0513160:CDS 30.0%
TTTGCAAAATTCATGCAAAG+AGG + chr3_4:63409986-63410005 Msa0513160:CDS 30.0%
TTGCAAAATTCATGCAAAGA+GGG + chr3_4:63409987-63410006 Msa0513160:CDS 30.0%
CTTCCCTCCTAAAAAAAACT+TGG - chr3_4:63405998-63406017 None:intergenic 35.0%
! CAATTAACACGTTGGTTGTA+TGG - chr3_4:63406211-63406230 None:intergenic 35.0%
CATACAACCAACGTGTTAAT+TGG + chr3_4:63406209-63406228 Msa0513160:CDS 35.0%
! CTTACAGATGGTTTAGAACA+AGG + chr3_4:63406247-63406266 Msa0513160:CDS 35.0%
! TACAGATGGTTTAGAACAAG+GGG + chr3_4:63406249-63406268 Msa0513160:CDS 35.0%
!!! TGTGTTTTTTCAGGTGGATT+TGG + chr3_4:63406366-63406385 Msa0513160:intron 35.0%
!!! TTTTTTCAGGTGGATTTGGT+TGG + chr3_4:63406370-63406389 Msa0513160:intron 35.0%
ATTGTGACAGTAAATGCCAT+TGG - chr3_4:63406436-63406455 None:intergenic 35.0%
TTACTGTCACAATGTTGTCA+TGG + chr3_4:63406443-63406462 Msa0513160:CDS 35.0%
!! ATAGCTTGTGAGACATTTTG+AGG + chr3_4:63406763-63406782 Msa0513160:intron 35.0%
CAACCAGGAAGTTCAAAAAT+TGG - chr3_4:63406844-63406863 None:intergenic 35.0%
CATTAATCATCACATCAACC+AGG - chr3_4:63406859-63406878 None:intergenic 35.0%
! CTGGTTGATGTGATGATTAA+TGG + chr3_4:63406857-63406876 Msa0513160:intron 35.0%
!!! TTTTTTACTTAGGTGGGTGA+TGG + chr3_4:63406909-63406928 Msa0513160:intron 35.0%
AAGATAGATGAGAAGAATCC+AGG + chr3_4:63406993-63407012 Msa0513160:CDS 35.0%
! AAGAGACTCGTGAATGTTTT+TGG + chr3_4:63407478-63407497 Msa0513160:intron 35.0%
CACTTATCAGGAACATTACT+TGG - chr3_4:63407580-63407599 None:intergenic 35.0%
! TGTGCAGTTATTTGAGTTTG+GGG + chr3_4:63407801-63407820 Msa0513160:intron 35.0%
GATACATGGATGAGTTATTG+TGG + chr3_4:63407890-63407909 Msa0513160:CDS 35.0%
TACATGGATGAGTTATTGTG+GGG + chr3_4:63407892-63407911 Msa0513160:CDS 35.0%
TCTAATGCTCATACATTTGG+TGG + chr3_4:63407970-63407989 Msa0513160:CDS 35.0%
!! ATACATTTGGTGGTATTGGT+TGG + chr3_4:63407980-63407999 Msa0513160:CDS 35.0%
!! TCTCCAAGTTTTAGCATCAA+AGG + chr3_4:63408041-63408060 Msa0513160:intron 35.0%
TTTGAATTAAGCCAACCTAG+AGG - chr3_4:63408128-63408147 None:intergenic 35.0%
AGTAAAAGCAAAAAGCAGCA+TGG - chr3_4:63408169-63408188 None:intergenic 35.0%
!!! TGCTGCTTTTTGCTTTTACT+TGG + chr3_4:63408169-63408188 Msa0513160:intron 35.0%
ACAGTTCAATTAAAGTGGTC+TGG + chr3_4:63408482-63408501 Msa0513160:intron 35.0%
ATTAAAGTGGTCTGGCTATA+TGG + chr3_4:63408490-63408509 Msa0513160:intron 35.0%
GCCAAATGTTGAAGTTTCAA+TGG + chr3_4:63408517-63408536 Msa0513160:intron 35.0%
!! ACATGCATTGACTGTCAAAA+TGG + chr3_4:63408731-63408750 Msa0513160:intron 35.0%
TCAATCAGATAAGCAATCAG+TGG - chr3_4:63408769-63408788 None:intergenic 35.0%
AGGGTTTGCAATAAATCAGT+TGG + chr3_4:63408890-63408909 Msa0513160:intron 35.0%
! AAAACTGCTAGAGCACATTT+TGG + chr3_4:63408922-63408941 Msa0513160:intron 35.0%
!!! TAGAGCACATTTTGGTTACT+TGG + chr3_4:63408930-63408949 Msa0513160:intron 35.0%
GATTACTCTATGTAAGACAG+TGG + chr3_4:63409525-63409544 Msa0513160:CDS 35.0%
CAAAAGATCAATTGCCAAGA+TGG + chr3_4:63409620-63409639 Msa0513160:CDS 35.0%
ATGAGTTACTTAGTGGGATA+TGG + chr3_4:63409719-63409738 Msa0513160:CDS 35.0%
TGAGTTACTTAGTGGGATAT+GGG + chr3_4:63409720-63409739 Msa0513160:CDS 35.0%
AGAGAGAATAAAGGGTTCAT+AGG + chr3_4:63409794-63409813 Msa0513160:CDS 35.0%
GAGAGAATAAAGGGTTCATA+GGG + chr3_4:63409795-63409814 Msa0513160:CDS 35.0%
! CAAGGGTATGATAATTGGTA+TGG + chr3_4:63409824-63409843 Msa0513160:CDS 35.0%
GAACAATTATGTGCAAACTG+AGG + chr3_4:63409928-63409947 Msa0513160:CDS 35.0%
TTTGCAAAAACTCCCACTAA+TGG - chr3_4:63409974-63409993 None:intergenic 35.0%
!! TACTTTGAAGCACAACGTTC+TGG + chr3_4:63406178-63406197 Msa0513160:CDS 40.0%
!! ACTTTGAAGCACAACGTTCT+GGG + chr3_4:63406179-63406198 Msa0513160:CDS 40.0%
GTTAATTGGCGTCATCATTC+TGG + chr3_4:63406223-63406242 Msa0513160:CDS 40.0%
!! CATCATTCTGGTCTTACAGA+TGG + chr3_4:63406235-63406254 Msa0513160:CDS 40.0%
!!! TGGGTTTGTGTTTTTTCAGG+TGG + chr3_4:63406360-63406379 Msa0513160:intron 40.0%
GCAGGTGATCATGTGAAATT+TGG + chr3_4:63406406-63406425 Msa0513160:CDS 40.0%
! CATGGAGTGCTATTGAGTTT+AGG + chr3_4:63406461-63406480 Msa0513160:CDS 40.0%
AGGCAAGAAATTGTTGAAGC+TGG + chr3_4:63406481-63406500 Msa0513160:CDS 40.0%
ATTGTTGAAGCTGGTGAACT+TGG + chr3_4:63406490-63406509 Msa0513160:CDS 40.0%
TGGTGAACTTGGTCATGTAA+TGG + chr3_4:63406501-63406520 Msa0513160:CDS 40.0%
ATACTAGCCCAAATGTGTTG+TGG + chr3_4:63406563-63406582 Msa0513160:intron 40.0%
TACTAGCCCAAATGTGTTGT+GGG + chr3_4:63406564-63406583 Msa0513160:intron 40.0%
GATTAGACATGTCACAGTGT+CGG - chr3_4:63406724-63406743 None:intergenic 40.0%
GAGACACAGACCATTATTGT+TGG + chr3_4:63406931-63406950 Msa0513160:CDS 40.0%
ACTATAGTGGCACTAGTGTT+TGG + chr3_4:63407153-63407172 Msa0513160:intron 40.0%
! GACATATTCATGGACTACAG+TGG + chr3_4:63407507-63407526 Msa0513160:intron 40.0%
GGCATTGTCTCGCATATTTA+AGG + chr3_4:63407528-63407547 Msa0513160:intron 40.0%
AGTTTGGGGACAAATACAGA+GGG + chr3_4:63407815-63407834 Msa0513160:CDS 40.0%
! GGGAAATATGATGGAAGTGT+TGG + chr3_4:63407835-63407854 Msa0513160:CDS 40.0%
! GCTCATACATTTGGTGGTAT+TGG + chr3_4:63407976-63407995 Msa0513160:CDS 40.0%
GTCCATAACAGAATTCAGCT+GGG + chr3_4:63408002-63408021 Msa0513160:CDS 40.0%
ATCCCAGCTGAATTCTGTTA+TGG - chr3_4:63408007-63408026 None:intergenic 40.0%
! TTCAATGGCTTATTTCTCGC+TGG + chr3_4:63408245-63408264 Msa0513160:intron 40.0%
TAGACTGCATCAATTGCACA+TGG - chr3_4:63408460-63408479 None:intergenic 40.0%
CAACCTTTCAACTCATCATG+AGG + chr3_4:63408806-63408825 Msa0513160:intron 40.0%
! TTGCCTCATGATGAGTTGAA+AGG - chr3_4:63408812-63408831 None:intergenic 40.0%
CATGAGGCAAGCTATTACTA+TGG + chr3_4:63408822-63408841 Msa0513160:intron 40.0%
! AAGGGTGTATTCCATGAATG+TGG - chr3_4:63408856-63408875 None:intergenic 40.0%
! GTGCTCTAGCAGTTTTACAA+TGG - chr3_4:63408918-63408937 None:intergenic 40.0%
!! GCACAATGATTGATAGTGGA+TGG + chr3_4:63409048-63409067 Msa0513160:intron 40.0%
TAACAAATGGATCAAGGGCA+AGG - chr3_4:63409104-63409123 None:intergenic 40.0%
!!! TGGATAGTGGGCCTTTATTT+TGG + chr3_4:63409129-63409148 Msa0513160:intron 40.0%
!!! GGATAGTGGGCCTTTATTTT+GGG + chr3_4:63409130-63409149 Msa0513160:intron 40.0%
! GAAAGTTGATCCCTTTGCAT+AGG - chr3_4:63409187-63409206 None:intergenic 40.0%
!! CTTTTAGAAATGTGGGAGTG+TGG - chr3_4:63409209-63409228 None:intergenic 40.0%
CTTACATAGAGTAATCCAGC+TGG - chr3_4:63409521-63409540 None:intergenic 40.0%
AATTGCCAAGATGGGATTGT+GGG + chr3_4:63409629-63409648 Msa0513160:CDS 40.0%
! GCACACAAGGGTATGATAAT+TGG + chr3_4:63409819-63409838 Msa0513160:CDS 40.0%
!!! ATTTTGGTTGGAGCTTTGGT+AGG + chr3_4:63409869-63409888 Msa0513160:CDS 40.0%
TCATGCAAAGAGGGAATAGA+AGG + chr3_4:63409996-63410015 Msa0513160:CDS 40.0%
GATGACGCCAATTAACACGT+TGG - chr3_4:63406219-63406238 None:intergenic 45.0%
! TTTCAGGTGGATTTGGTTGG+AGG + chr3_4:63406373-63406392 Msa0513160:intron 45.0%
! TTCAGGTGGATTTGGTTGGA+GGG + chr3_4:63406374-63406393 Msa0513160:intron 45.0%
ACTGTGACATGTCTAATCCG+AGG + chr3_4:63406726-63406745 Msa0513160:intron 45.0%
GTCTCACAAGCTATGAAGCA+CGG - chr3_4:63406757-63406776 None:intergenic 45.0%
CTGGACGTTGCCAACAATAA+TGG - chr3_4:63406944-63406963 None:intergenic 45.0%
TTATTGTTGGCAACGTCCAG+AGG + chr3_4:63406944-63406963 Msa0513160:CDS 45.0%
GAAGAATCCAGGTTCAGATC+TGG + chr3_4:63407004-63407023 Msa0513160:CDS 45.0%
TGGAGAAACTTCTGCAGCTA+TGG + chr3_4:63407028-63407047 Msa0513160:CDS 45.0%
CAGCTGCTTCCATTGTGTTT+AGG + chr3_4:63407051-63407070 Msa0513160:CDS 45.0%
TTACTACTACCTGCTGAGCA+TGG - chr3_4:63407112-63407131 None:intergenic 45.0%
AGTGGCACTAGTGTTTGGTT+TGG + chr3_4:63407158-63407177 Msa0513160:intron 45.0%
GTGGGGTATGAAGTATGAAC+TGG + chr3_4:63407657-63407676 Msa0513160:intron 45.0%
GAGTTTGGGGACAAATACAG+AGG + chr3_4:63407814-63407833 Msa0513160:CDS 45.0%
AGTGAAGAGCTACTATGCGT+CGG + chr3_4:63407861-63407880 Msa0513160:CDS 45.0%
AGTTATTGTGGGGAGCTATG+TGG + chr3_4:63407902-63407921 Msa0513160:CDS 45.0%
GGTCCATAACAGAATTCAGC+TGG + chr3_4:63408001-63408020 Msa0513160:CDS 45.0%
AGCTGGGATGTTAAGTATGC+TGG + chr3_4:63408018-63408037 Msa0513160:CDS 45.0%
GTCTCATTTCACGTTCCTCT+AGG + chr3_4:63408110-63408129 Msa0513160:intron 45.0%
CATTTCACGTTCCTCTAGGT+TGG + chr3_4:63408114-63408133 Msa0513160:intron 45.0%
TGTGCCTTCTACCTATGCAA+AGG + chr3_4:63409173-63409192 Msa0513160:intron 45.0%
GTGCCTTCTACCTATGCAAA+GGG + chr3_4:63409174-63409193 Msa0513160:intron 45.0%
GATCCCTTTGCATAGGTAGA+AGG - chr3_4:63409180-63409199 None:intergenic 45.0%
AAACAATGGCAGCAGCAATG+TGG + chr3_4:63409487-63409506 Msa0513160:CDS 45.0%
AATGTGGAAAGAACACCAGC+TGG + chr3_4:63409503-63409522 Msa0513160:CDS 45.0%
CAATTGCCAAGATGGGATTG+TGG + chr3_4:63409628-63409647 Msa0513160:CDS 45.0%
! CTCTATGATGCACCCTTTTG+GGG - chr3_4:63409754-63409773 None:intergenic 45.0%
! CCTCTATGATGCACCCTTTT+GGG - chr3_4:63409755-63409774 None:intergenic 45.0%
! ACCTCTATGATGCACCCTTT+TGG - chr3_4:63409756-63409775 None:intergenic 45.0%
GCAAAGAGGGAATAGAAGGT+TGG + chr3_4:63410000-63410019 Msa0513160:CDS 45.0%
! TTGAAGCACAACGTTCTGGG+AGG + chr3_4:63406182-63406201 Msa0513160:CDS 50.0%
!! GTTGGAGGGTACTATGATGC+AGG + chr3_4:63406388-63406407 Msa0513160:CDS 50.0%
CCTCTGCCCACAACACATTT+GGG - chr3_4:63406573-63406592 None:intergenic 50.0%
ACCTCTGCCCACAACACATT+TGG - chr3_4:63406574-63406593 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr3_4:63406746-63406765 None:intergenic 50.0%
CTTGAGGTTGTCATGTCCTC+TGG - chr3_4:63406963-63406982 None:intergenic 50.0%
AATCCAGGTTCAGATCTGGC+TGG + chr3_4:63407008-63407027 Msa0513160:CDS 50.0%
! ACTTTTGCACCATGCTCAGC+AGG + chr3_4:63407100-63407119 Msa0513160:CDS 50.0%
!! GGCACTAGTGTTTGGTTTGG+TGG + chr3_4:63407161-63407180 Msa0513160:intron 50.0%
TGGTGTGTGCTCCACATTCA+TGG + chr3_4:63408842-63408861 Msa0513160:intron 50.0%
ATGGGCCTAAGTACCCCAAA+AGG + chr3_4:63409738-63409757 Msa0513160:CDS 50.0%
TGGGCCTAAGTACCCCAAAA+GGG + chr3_4:63409739-63409758 Msa0513160:CDS 50.0%
!!! TGCACCCTTTTGGGGTACTT+AGG - chr3_4:63409746-63409765 None:intergenic 50.0%
! CCCAAAAGGGTGCATCATAG+AGG + chr3_4:63409752-63409771 Msa0513160:CDS 50.0%
GGTTCATAGGGTGCACACAA+GGG + chr3_4:63409807-63409826 Msa0513160:CDS 50.0%
! TTGGTTGGAGCTTTGGTAGG+AGG + chr3_4:63409872-63409891 Msa0513160:CDS 50.0%
CCCAAATGTGTTGTGGGCAG+AGG + chr3_4:63406570-63406589 Msa0513160:intron 55.0%
TCTCCAGCCAGATCTGAACC+TGG - chr3_4:63407014-63407033 None:intergenic 55.0%
! AGCTACTATGCGTCGGTGAG+TGG + chr3_4:63407868-63407887 Msa0513160:CDS 55.0%
! TGCGTCGGTGAGTGGATACA+TGG + chr3_4:63407876-63407895 Msa0513160:CDS 55.0%
CATGGCCCACAATCCCATCT+TGG - chr3_4:63409637-63409656 None:intergenic 55.0%
GGGTTCATAGGGTGCACACA+AGG + chr3_4:63409806-63409825 Msa0513160:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 63405908 63410279 63405908 ID=Msa0513160;Name=Msa0513160
chr3_4 mRNA 63405908 63410279 63405908 ID=Msa0513160-mRNA-1;Parent=Msa0513160;Name=Msa0513160-mRNA-1;_AED=0.23;_eAED=0.23;_QI=120|0.5|0.6|1|0.75|1|5|219|515
chr3_4 exon 63405908 63406270 63405908 ID=Msa0513160-mRNA-1:exon:15839;Parent=Msa0513160-mRNA-1
chr3_4 exon 63406379 63406576 63406379 ID=Msa0513160-mRNA-1:exon:15840;Parent=Msa0513160-mRNA-1
chr3_4 exon 63406921 63407121 63406921 ID=Msa0513160-mRNA-1:exon:15841;Parent=Msa0513160-mRNA-1
chr3_4 exon 63407808 63408047 63407808 ID=Msa0513160-mRNA-1:exon:15842;Parent=Msa0513160-mRNA-1
chr3_4 exon 63409395 63410279 63409395 ID=Msa0513160-mRNA-1:exon:15843;Parent=Msa0513160-mRNA-1
chr3_4 five_prime_UTR 63405908 63406027 63405908 ID=Msa0513160-mRNA-1:five_prime_utr;Parent=Msa0513160-mRNA-1
chr3_4 CDS 63406028 63406270 63406028 ID=Msa0513160-mRNA-1:cds;Parent=Msa0513160-mRNA-1
chr3_4 CDS 63406379 63406576 63406379 ID=Msa0513160-mRNA-1:cds;Parent=Msa0513160-mRNA-1
chr3_4 CDS 63406921 63407121 63406921 ID=Msa0513160-mRNA-1:cds;Parent=Msa0513160-mRNA-1
chr3_4 CDS 63407808 63408047 63407808 ID=Msa0513160-mRNA-1:cds;Parent=Msa0513160-mRNA-1
chr3_4 CDS 63409395 63410060 63409395 ID=Msa0513160-mRNA-1:cds;Parent=Msa0513160-mRNA-1
chr3_4 three_prime_UTR 63410061 63410279 63410061 ID=Msa0513160-mRNA-1:three_prime_utr;Parent=Msa0513160-mRNA-1
Gene Sequence

>Msa0513160

ATGAAGAATGAGAGACAACAACAACATCATAGAGCTTCTAAAATTCCCAGATTTAAACATCATTGTCACATTTTTCTCTTCATTTTGTTCACTCTTTTTTCCATAACACAATCTTTTGATTATGCTGATGCACTTTCAAAAAGTCTTCTTTACTTTGAAGCACAACGTTCTGGGAGGTTACCATACAACCAACGTGTTAATTGGCGTCATCATTCTGGTCTTACAGATGGTTTAGAACAAGGGGTGGATTTGGTTGGAGGGTACTATGATGCAGGTGATCATGTGAAATTTGGTTTACCAATGGCATTTACTGTCACAATGTTGTCATGGAGTGCTATTGAGTTTAGGCAAGAAATTGTTGAAGCTGGTGAACTTGGTCATGTAATGGAAGCAATTAAATGGGGAACTGATTATTTCATCAAAGCTCATACTAGCCCAAATGTGGGTGATGGAGACACAGACCATTATTGTTGGCAACGTCCAGAGGACATGACAACCTCAAGACAAGCTTTTAAGATAGATGAGAAGAATCCAGGTTCAGATCTGGCTGGAGAAACTTCTGCAGCTATGGCAGCTGCTTCCATTGTGTTTAGGAAAACAAATCCACATTATTCTCAGCTACTTTTGCACCATGCTCAGCAGTTATTTGAGTTTGGGGACAAATACAGAGGGAAATATGATGGAAGTGTTGGAGTAGTGAAGAGCTACTATGCGTCGGTGAGTGGATACATGGATGAGTTATTGTGGGGAGCTATGTGGTTGTACAAAGCCACCGACAAACAAGAATATTTTGACTACATTATTTCTAATGCTCATACATTTGGTGGTATTGGTTGGTCCATAACAGAATTCAGCTGGGATGTTAAGTATGCTGGTCTCCAATTTTTGATGGATGCAAAACACAATAAGCATGCTGATTTACTAGAACAGTACAAATCAAAAGCAGAGTACTATATATGTTCATGTCTCAACAAAAACAATGGCAGCAGCAATGTGGAAAGAACACCAGCTGGATTACTCTATGTAAGACAGTGGAACAACATGCAATATGTTTCTACAGCAGCATTTCTACTCACAGTTTACTCTGATTTTCTCCAAAGTGAGAATCAAAAGATCAATTGCCAAGATGGGATTGTGGGCCATGATGAAATTCTCAATTTTGCCAAGTCACAAGTTGATTACATTTTGGGCCAAAATCCACTTAACATGAGTTACTTAGTGGGATATGGGCCTAAGTACCCCAAAAGGGTGCATCATAGAGGTGCATCCATTGTATCATATAGAGAGAATAAAGGGTTCATAGGGTGCACACAAGGGTATGATAATTGGTATGGTGTCCAAGAACCAAATCCTAATATTTTGGTTGGAGCTTTGGTAGGAGGACCTGATAATCTAGACAATTTTGAGGATCAAAGGAACAATTATGTGCAAACTGAGGCTTGCACATATAATACTGCACCATTAGTGGGAGTTTTTGCAAAATTCATGCAAAGAGGGAATAGAAGGTTGGTTCATGATTCTGATTCACTTTTAGTTGCTTCCTTTTAA

Protein sequence

>Msa0513160

MKNERQQQHHRASKIPRFKHHCHIFLFILFTLFSITQSFDYADALSKSLLYFEAQRSGRLPYNQRVNWRHHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSAIEFRQEIVEAGELGHVMEAIKWGTDYFIKAHTSPNVGDGDTDHYCWQRPEDMTTSRQAFKIDEKNPGSDLAGETSAAMAAASIVFRKTNPHYSQLLLHHAQQLFEFGDKYRGKYDGSVGVVKSYYASVSGYMDELLWGAMWLYKATDKQEYFDYIISNAHTFGGIGWSITEFSWDVKYAGLQFLMDAKHNKHADLLEQYKSKAEYYICSCLNKNNGSSNVERTPAGLLYVRQWNNMQYVSTAAFLLTVYSDFLQSENQKINCQDGIVGHDEILNFAKSQVDYILGQNPLNMSYLVGYGPKYPKRVHHRGASIVSYRENKGFIGCTQGYDNWYGVQEPNPNILVGALVGGPDNLDNFEDQRNNYVQTEACTYNTAPLVGVFAKFMQRGNRRLVHDSDSLLVASF*