Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100890 | XP_003621257.1 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 1.08e-176 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100890 | sp|Q9C554|EXPA1_ARATH | 76.800 | 250 | 47 | 3 | 1 | 240 | 1 | 249 | 1.57e-136 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100890 | G7L212 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 5.14e-177 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0663300 | Msa1100890 | 0.814984 | 1.165879e-51 | -8.615850e-47 |
| Msa0664060 | Msa1100890 | 0.803665 | 3.127527e-49 | -8.615850e-47 |
| Msa0447370 | Msa1100890 | 0.803781 | 2.959331e-49 | -8.615850e-47 |
| Msa1007270 | Msa1100890 | 0.861197 | 1.215287e-63 | -8.615850e-47 |
| Msa1048920 | Msa1100890 | 0.943329 | 1.464052e-102 | -8.615850e-47 |
| Msa1100800 | Msa1100890 | 0.996509 | 1.918065e-228 | -8.615850e-47 |
| Msa1100890 | Msa1253310 | 0.800486 | 1.409266e-48 | -8.615850e-47 |
| Msa1100890 | Msa1323670 | 0.800970 | 1.122731e-48 | -8.615850e-47 |
| Msa1100890 | Msa1445190 | 0.815520 | 8.863735e-52 | -8.615850e-47 |
| Msa0513160 | Msa1100890 | 0.816702 | 4.827165e-52 | -8.615850e-47 |
| Msa0527860 | Msa1100890 | 0.827534 | 1.483930e-54 | -8.615850e-47 |
| Msa0574890 | Msa1100890 | 0.800275 | 1.555984e-48 | -8.615850e-47 |
| Msa0582450 | Msa1100890 | 0.814307 | 1.646888e-51 | -8.615850e-47 |
| Msa0586190 | Msa1100890 | 0.809911 | 1.497018e-50 | -8.615850e-47 |
| Msa0861510 | Msa1100890 | 0.809615 | 1.733543e-50 | -8.615850e-47 |
| Msa0861600 | Msa1100890 | 0.814469 | 1.516471e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100890 | MtrunA17_Chr7g0217661 | 99.587 | 242 | 1 | 0 | 1 | 242 | 1 | 242 | 0.0 | 495 |
| Msa1100890 | MtrunA17_Chr6g0453341 | 86.066 | 244 | 32 | 1 | 1 | 242 | 11 | 254 | 2.46e-143 | 401 |
| Msa1100890 | MtrunA17_Chr5g0417701 | 75.502 | 249 | 50 | 3 | 1 | 240 | 1 | 247 | 1.60e-135 | 381 |
| Msa1100890 | MtrunA17_Chr4g0042521 | 73.896 | 249 | 54 | 3 | 1 | 240 | 1 | 247 | 6.75e-132 | 372 |
| Msa1100890 | MtrunA17_Chr3g0092071 | 78.475 | 223 | 40 | 1 | 26 | 240 | 25 | 247 | 1.29e-131 | 371 |
| Msa1100890 | MtrunA17_Chr3g0128801 | 77.130 | 223 | 43 | 1 | 26 | 240 | 31 | 253 | 7.10e-129 | 364 |
| Msa1100890 | MtrunA17_Chr3g0128791 | 69.960 | 253 | 63 | 3 | 1 | 240 | 1 | 253 | 3.01e-128 | 363 |
| Msa1100890 | MtrunA17_Chr3g0107311 | 69.478 | 249 | 67 | 2 | 1 | 240 | 6 | 254 | 7.06e-126 | 357 |
| Msa1100890 | MtrunA17_Chr3g0107291 | 69.076 | 249 | 68 | 2 | 1 | 240 | 12 | 260 | 3.20e-125 | 355 |
| Msa1100890 | MtrunA17_Chr5g0432611 | 66.397 | 247 | 75 | 1 | 2 | 240 | 5 | 251 | 9.79e-124 | 351 |
| Msa1100890 | MtrunA17_Chr5g0435311 | 65.600 | 250 | 74 | 3 | 1 | 240 | 59 | 306 | 4.38e-117 | 337 |
| Msa1100890 | MtrunA17_Chr7g0238681 | 65.323 | 248 | 75 | 3 | 4 | 240 | 9 | 256 | 4.92e-115 | 329 |
| Msa1100890 | MtrunA17_Chr2g0328261 | 63.563 | 247 | 80 | 2 | 4 | 240 | 12 | 258 | 1.46e-112 | 323 |
| Msa1100890 | MtrunA17_Chr4g0031621 | 63.265 | 245 | 80 | 2 | 6 | 240 | 12 | 256 | 3.24e-108 | 312 |
| Msa1100890 | MtrunA17_Chr1g0193631 | 63.636 | 231 | 72 | 4 | 20 | 238 | 24 | 254 | 3.77e-104 | 302 |
| Msa1100890 | MtrunA17_Chr7g0271001 | 60.816 | 245 | 83 | 5 | 3 | 235 | 5 | 248 | 3.11e-102 | 297 |
| Msa1100890 | MtrunA17_Chr1g0157061 | 60.369 | 217 | 75 | 3 | 33 | 238 | 22 | 238 | 1.19e-93 | 275 |
| Msa1100890 | MtrunA17_Chr7g0218741 | 54.251 | 247 | 103 | 4 | 2 | 239 | 6 | 251 | 4.60e-92 | 271 |
| Msa1100890 | MtrunA17_Chr4g0069711 | 56.444 | 225 | 85 | 4 | 25 | 238 | 60 | 282 | 1.45e-91 | 271 |
| Msa1100890 | MtrunA17_Chr8g0360041 | 58.296 | 223 | 85 | 2 | 23 | 237 | 28 | 250 | 1.22e-90 | 268 |
| Msa1100890 | MtrunA17_Chr7g0218751 | 55.102 | 245 | 102 | 2 | 1 | 237 | 3 | 247 | 5.93e-90 | 266 |
| Msa1100890 | MtrunA17_Chr5g0433841 | 53.304 | 227 | 97 | 2 | 25 | 242 | 40 | 266 | 2.65e-86 | 257 |
| Msa1100890 | MtrunA17_Chr7g0218761 | 58.416 | 202 | 76 | 2 | 45 | 238 | 8 | 209 | 5.91e-82 | 244 |
| Msa1100890 | MtrunA17_Chr4g0021561 | 48.571 | 245 | 114 | 3 | 6 | 240 | 14 | 256 | 4.17e-81 | 243 |
| Msa1100890 | MtrunA17_Chr4g0057091 | 51.230 | 244 | 107 | 4 | 4 | 236 | 14 | 256 | 6.09e-81 | 243 |
| Msa1100890 | MtrunA17_Chr8g0360721 | 59.296 | 199 | 73 | 2 | 45 | 235 | 17 | 215 | 6.33e-81 | 241 |
| Msa1100890 | MtrunA17_Chr5g0398271 | 52.444 | 225 | 97 | 3 | 24 | 238 | 35 | 259 | 1.68e-80 | 242 |
| Msa1100890 | MtrunA17_Chr3g0109801 | 47.458 | 236 | 107 | 5 | 23 | 241 | 50 | 285 | 1.39e-73 | 225 |
| Msa1100890 | MtrunA17_Chr4g0022851 | 56.780 | 118 | 45 | 2 | 1 | 112 | 7 | 124 | 8.04e-41 | 136 |
| Msa1100890 | MtrunA17_Chr4g0022841 | 51.724 | 116 | 56 | 0 | 122 | 237 | 1 | 116 | 4.37e-38 | 129 |
| Msa1100890 | MtrunA17_Chr2g0324191 | 42.177 | 147 | 70 | 3 | 4 | 140 | 11 | 152 | 8.76e-35 | 122 |
| Msa1100890 | MtrunA17_Chr2g0324181 | 47.458 | 118 | 58 | 1 | 123 | 240 | 4 | 117 | 9.26e-34 | 118 |
| Msa1100890 | MtrunA17_Chr2g0324221 | 34.667 | 225 | 131 | 8 | 26 | 238 | 35 | 255 | 5.75e-30 | 112 |
| Msa1100890 | MtrunA17_Chr2g0324201 | 33.725 | 255 | 145 | 11 | 1 | 238 | 6 | 253 | 4.58e-29 | 110 |
| Msa1100890 | MtrunA17_Chr4g0021641 | 33.200 | 250 | 148 | 10 | 4 | 238 | 16 | 261 | 9.98e-28 | 106 |
| Msa1100890 | MtrunA17_Chr7g0231221 | 32.579 | 221 | 129 | 10 | 31 | 235 | 53 | 269 | 2.08e-25 | 100 |
| Msa1100890 | MtrunA17_Chr4g0012801 | 32.743 | 226 | 127 | 9 | 26 | 235 | 42 | 258 | 4.90e-25 | 99.8 |
| Msa1100890 | MtrunA17_Chr7g0231211 | 32.456 | 228 | 128 | 11 | 25 | 235 | 46 | 264 | 1.33e-24 | 98.6 |
| Msa1100890 | MtrunA17_Chr8g0359981 | 60.000 | 80 | 25 | 4 | 68 | 140 | 2 | 81 | 9.58e-24 | 92.4 |
| Msa1100890 | MtrunA17_Chr4g0055601 | 30.493 | 223 | 143 | 8 | 26 | 238 | 28 | 248 | 2.58e-22 | 92.0 |
| Msa1100890 | MtrunA17_Chr4g0055061 | 29.644 | 253 | 151 | 12 | 1 | 235 | 3 | 246 | 6.43e-20 | 85.5 |
| Msa1100890 | MtrunA17_Chr8g0359971 | 50.649 | 77 | 37 | 1 | 161 | 236 | 1 | 77 | 2.93e-19 | 79.3 |
| Msa1100890 | MtrunA17_Chr5g0399811 | 29.130 | 230 | 149 | 10 | 23 | 241 | 26 | 252 | 1.29e-18 | 82.0 |
| Msa1100890 | MtrunA17_Chr4g0055561 | 30.357 | 224 | 141 | 10 | 23 | 235 | 25 | 244 | 3.40e-18 | 80.9 |
| Msa1100890 | MtrunA17_Chr1g0193571 | 57.407 | 54 | 23 | 0 | 185 | 238 | 4 | 57 | 5.41e-16 | 70.5 |
| Msa1100890 | MtrunA17_Chr4g0038741 | 27.854 | 219 | 125 | 9 | 37 | 235 | 32 | 237 | 2.38e-13 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100890 | AT1G69530.2 | 76.800 | 250 | 47 | 3 | 1 | 240 | 1 | 249 | 1.60e-137 | 386 |
| Msa1100890 | AT1G69530.1 | 76.800 | 250 | 47 | 3 | 1 | 240 | 1 | 249 | 1.60e-137 | 386 |
| Msa1100890 | AT2G03090.1 | 77.510 | 249 | 45 | 3 | 1 | 240 | 6 | 252 | 6.08e-137 | 385 |
| Msa1100890 | AT3G29030.1 | 83.945 | 218 | 34 | 1 | 26 | 242 | 38 | 255 | 9.26e-137 | 385 |
| Msa1100890 | AT1G69530.3 | 77.236 | 246 | 45 | 3 | 1 | 236 | 1 | 245 | 3.51e-136 | 384 |
| Msa1100890 | AT1G26770.1 | 76.955 | 243 | 46 | 2 | 6 | 240 | 8 | 248 | 7.96e-134 | 377 |
| Msa1100890 | AT1G26770.2 | 76.955 | 243 | 46 | 2 | 6 | 240 | 18 | 258 | 9.41e-134 | 377 |
| Msa1100890 | AT5G56320.1 | 70.325 | 246 | 63 | 2 | 3 | 240 | 8 | 251 | 1.61e-128 | 364 |
| Msa1100890 | AT5G56320.2 | 70.325 | 246 | 63 | 2 | 3 | 240 | 8 | 251 | 1.61e-128 | 364 |
| Msa1100890 | AT5G56320.3 | 70.325 | 246 | 63 | 2 | 3 | 240 | 8 | 251 | 6.96e-128 | 364 |
| Msa1100890 | AT2G40610.1 | 67.742 | 248 | 67 | 3 | 2 | 240 | 10 | 253 | 2.26e-122 | 348 |
| Msa1100890 | AT2G39700.1 | 65.613 | 253 | 69 | 4 | 4 | 240 | 5 | 255 | 2.23e-119 | 341 |
| Msa1100890 | AT5G02260.1 | 64.516 | 248 | 78 | 2 | 3 | 240 | 9 | 256 | 8.85e-118 | 337 |
| Msa1100890 | AT5G05290.1 | 64.257 | 249 | 75 | 3 | 1 | 240 | 12 | 255 | 4.89e-116 | 332 |
| Msa1100890 | AT3G55500.1 | 62.400 | 250 | 84 | 2 | 1 | 240 | 9 | 258 | 4.93e-116 | 332 |
| Msa1100890 | AT1G69530.5 | 72.174 | 230 | 51 | 4 | 1 | 220 | 1 | 227 | 6.45e-116 | 332 |
| Msa1100890 | AT1G69530.4 | 68.000 | 250 | 39 | 4 | 1 | 240 | 1 | 219 | 1.05e-115 | 330 |
| Msa1100890 | AT2G37640.1 | 70.667 | 225 | 56 | 2 | 26 | 240 | 36 | 260 | 2.14e-115 | 331 |
| Msa1100890 | AT2G28950.1 | 62.745 | 255 | 80 | 3 | 1 | 240 | 1 | 255 | 7.76e-111 | 319 |
| Msa1100890 | AT2G37640.2 | 68.269 | 208 | 56 | 2 | 43 | 240 | 28 | 235 | 1.11e-102 | 298 |
| Msa1100890 | AT4G01630.1 | 58.704 | 247 | 89 | 5 | 2 | 235 | 3 | 249 | 4.61e-101 | 294 |
| Msa1100890 | AT1G20190.1 | 62.273 | 220 | 72 | 3 | 28 | 236 | 28 | 247 | 7.85e-98 | 286 |
| Msa1100890 | AT5G39280.1 | 55.263 | 228 | 96 | 1 | 17 | 238 | 45 | 272 | 3.99e-92 | 272 |
| Msa1100890 | AT5G39300.1 | 55.357 | 224 | 94 | 1 | 21 | 238 | 50 | 273 | 7.12e-91 | 269 |
| Msa1100890 | AT5G39270.1 | 54.955 | 222 | 94 | 1 | 23 | 238 | 55 | 276 | 4.26e-89 | 265 |
| Msa1100890 | AT5G39290.1 | 54.091 | 220 | 95 | 1 | 25 | 238 | 57 | 276 | 9.33e-88 | 261 |
| Msa1100890 | AT5G39310.1 | 53.304 | 227 | 99 | 2 | 19 | 238 | 83 | 309 | 2.41e-83 | 251 |
| Msa1100890 | AT1G12560.1 | 50.820 | 244 | 110 | 3 | 2 | 235 | 12 | 255 | 1.29e-82 | 248 |
| Msa1100890 | AT1G62980.1 | 50.820 | 244 | 108 | 4 | 6 | 238 | 11 | 253 | 5.96e-82 | 246 |
| Msa1100890 | AT3G15370.1 | 50.820 | 244 | 110 | 6 | 7 | 240 | 8 | 251 | 4.33e-80 | 241 |
| Msa1100890 | AT3G03220.1 | 50.000 | 226 | 104 | 2 | 25 | 241 | 39 | 264 | 8.24e-79 | 238 |
| Msa1100890 | AT5G39260.1 | 53.636 | 220 | 100 | 2 | 21 | 238 | 40 | 259 | 2.93e-78 | 237 |
| Msa1100890 | AT1G20190.2 | 57.754 | 187 | 68 | 3 | 61 | 236 | 2 | 188 | 5.76e-76 | 228 |
| Msa1100890 | AT4G38210.1 | 45.817 | 251 | 124 | 3 | 3 | 241 | 5 | 255 | 5.58e-75 | 228 |
| Msa1100890 | AT3G15370.2 | 45.255 | 274 | 110 | 7 | 7 | 240 | 8 | 281 | 1.43e-73 | 225 |
| Msa1100890 | AT2G20750.1 | 33.193 | 238 | 145 | 7 | 14 | 238 | 28 | 264 | 9.98e-33 | 120 |
| Msa1100890 | AT4G28250.1 | 32.950 | 261 | 148 | 10 | 1 | 238 | 1 | 257 | 1.82e-31 | 117 |
| Msa1100890 | AT4G28250.2 | 31.538 | 260 | 147 | 10 | 1 | 238 | 1 | 251 | 7.83e-28 | 107 |
| Msa1100890 | AT1G65680.1 | 32.456 | 228 | 135 | 9 | 23 | 235 | 44 | 267 | 1.21e-25 | 101 |
| Msa1100890 | AT2G20750.2 | 34.463 | 177 | 104 | 5 | 14 | 179 | 28 | 203 | 1.13e-24 | 97.8 |
| Msa1100890 | AT2G45110.1 | 30.859 | 256 | 143 | 11 | 1 | 235 | 11 | 253 | 3.87e-22 | 92.0 |
| Msa1100890 | AT1G65681.1 | 33.014 | 209 | 123 | 9 | 40 | 235 | 12 | 216 | 1.07e-21 | 90.1 |
| Msa1100890 | AT4G28250.4 | 32.487 | 197 | 111 | 8 | 1 | 184 | 8 | 195 | 8.15e-21 | 87.4 |
| Msa1100890 | AT4G28250.3 | 32.663 | 199 | 105 | 8 | 1 | 179 | 1 | 190 | 3.36e-20 | 85.9 |
| Msa1100890 | AT4G17030.1 | 30.455 | 220 | 142 | 8 | 25 | 235 | 26 | 243 | 6.89e-20 | 85.9 |
| Msa1100890 | AT3G60570.1 | 28.251 | 223 | 142 | 7 | 26 | 235 | 34 | 251 | 6.46e-18 | 80.9 |
| Msa1100890 | AT3G45970.2 | 26.667 | 210 | 128 | 9 | 44 | 235 | 14 | 215 | 1.96e-13 | 68.2 |
| Msa1100890 | AT3G45960.2 | 27.805 | 205 | 121 | 9 | 49 | 235 | 46 | 241 | 3.41e-12 | 64.7 |
| Msa1100890 | AT4G38400.1 | 26.768 | 198 | 132 | 9 | 49 | 235 | 47 | 242 | 1.65e-11 | 62.8 |
| Msa1100890 | AT3G45960.1 | 28.646 | 192 | 110 | 9 | 62 | 235 | 11 | 193 | 2.27e-11 | 62.0 |
| Msa1100890 | AT3G45970.1 | 25.854 | 205 | 126 | 9 | 49 | 235 | 46 | 242 | 6.65e-11 | 61.2 |
Find 113 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACCTTGTACTTTAATTAT+TGG | 0.154188 | 7_3:+31326310 | Msa1100890:three_prime_UTR |
| GTAGTGTCCCCTACACTTTC+AGG | 0.203364 | 7_3:-31326401 | None:intergenic |
| CAAAGTAACTCTTACCTTAA+TGG | 0.204631 | 7_3:+31325675 | Msa1100890:CDS |
| AATGCTCATGCTACTTTCTA+TGG | 0.220166 | 7_3:+31324225 | Msa1100890:CDS |
| TACATGGTTTCTCATGTAAA+TGG | 0.221650 | 7_3:+31324177 | Msa1100890:CDS |
| TACATCTTAGTGGATCTATT+AGG | 0.223857 | 7_3:+31326506 | Msa1100890:three_prime_UTR |
| TTTAAGTTGAGTAGTGTAAA+TGG | 0.236702 | 7_3:+31326073 | Msa1100890:three_prime_UTR |
| GCTCCTGCTGGATGGTCTTT+TGG | 0.239807 | 7_3:+31325759 | Msa1100890:CDS |
| ATAGGTGGGGCTTGTGGATA+TGG | 0.246425 | 7_3:+31324649 | Msa1100890:intron |
| TTCCATAACCTTGGCTATAA+AGG | 0.251122 | 7_3:-31324675 | None:intergenic |
| AGGAAAGACTTTGTCCATTA+AGG | 0.266746 | 7_3:-31325689 | None:intergenic |
| TATTGGTTAATGAATGTAAA+AGG | 0.283242 | 7_3:+31326327 | Msa1100890:three_prime_UTR |
| AAAGGAGTTGTTTGTGGAAA+TGG | 0.293309 | 7_3:-31324019 | None:intergenic |
| TATGGTGGAAGTGATGCTTC+TGG | 0.307440 | 7_3:+31324243 | Msa1100890:CDS |
| TCTAGATCTTGAACCTTTGA+TGG | 0.316697 | 7_3:-31325616 | None:intergenic |
| ACATCTTAGTGGATCTATTA+GGG | 0.323590 | 7_3:+31326507 | Msa1100890:three_prime_UTR |
| TGGAAGTAACTTGTATTATA+AGG | 0.326107 | 7_3:-31326578 | None:intergenic |
| ACCACCAGGTGGACAGAAAT+TGG | 0.328400 | 7_3:-31324821 | None:intergenic |
| GGCAAGCCATGTCAAGGAAT+TGG | 0.336529 | 7_3:+31325640 | Msa1100890:CDS |
| GCAAGCCATGTCAAGGAATT+GGG | 0.340806 | 7_3:+31325641 | Msa1100890:CDS |
| TCCACAAACAACTCCTTTCA+AGG | 0.341172 | 7_3:+31324024 | Msa1100890:five_prime_UTR |
| AACCTTTATAGCCAAGGTTA+TGG | 0.350030 | 7_3:+31324673 | Msa1100890:CDS |
| CAGGTTTGCAAGTTGAAGTT+AGG | 0.350460 | 7_3:-31326382 | None:intergenic |
| CAACTTTAAACCGTTTGAAC+CGG | 0.351388 | 7_3:-31325928 | None:intergenic |
| TCATTCAATGCTGCTCCTGC+TGG | 0.373533 | 7_3:+31325747 | Msa1100890:CDS |
| GAAAGATCAAAATGGTGATT+AGG | 0.383324 | 7_3:-31324856 | None:intergenic |
| TTGCTGGTTTATTTCTGATT+CGG | 0.383659 | 7_3:+31325972 | Msa1100890:three_prime_UTR |
| GTACAATTGACATAGGTATA+AGG | 0.404063 | 7_3:-31326533 | None:intergenic |
| TTAAGTTGAGTAGTGTAAAT+GGG | 0.411771 | 7_3:+31326074 | Msa1100890:three_prime_UTR |
| CCTTCGACATTGTTAGTTTG+CGG | 0.413281 | 7_3:-31325870 | None:intergenic |
| TGTGGAAATGGAAAGGGAAT+TGG | 0.415617 | 7_3:-31324007 | None:intergenic |
| TTAGTACTTGTCACAAATGT+TGG | 0.427387 | 7_3:+31325567 | Msa1100890:CDS |
| AAATGGGATTTATTAGTGTT+GGG | 0.427741 | 7_3:+31326090 | Msa1100890:three_prime_UTR |
| TAAATGGGATTTATTAGTGT+TGG | 0.429812 | 7_3:+31326089 | Msa1100890:three_prime_UTR |
| GGAATTAGATTCACCATCAA+TGG | 0.441161 | 7_3:+31325528 | Msa1100890:CDS |
| AACTTTAAACCGTTTGAACC+GGG | 0.445227 | 7_3:-31325927 | None:intergenic |
| AACTGACACACTTGAGCTGT+TGG | 0.450735 | 7_3:-31323941 | None:intergenic |
| TTGTTAGTTTGCGGTTCAAT+TGG | 0.450998 | 7_3:-31325861 | None:intergenic |
| GTCACAAATGTTGGAGGTGC+TGG | 0.460146 | 7_3:+31325576 | Msa1100890:CDS |
| ATTGGTTAAACCATTCGATT+CGG | 0.469049 | 7_3:-31325843 | None:intergenic |
| CTGTATTTGTTCCATAACCT+TGG | 0.469990 | 7_3:-31324684 | None:intergenic |
| TTTGTTGTCACCACAAGTAA+TGG | 0.472648 | 7_3:+31325711 | Msa1100890:CDS |
| CACATTGCTCAATATAGAGC+AGG | 0.475970 | 7_3:+31324895 | Msa1100890:CDS |
| GATCCACAATGGTGTAATCC+TGG | 0.478438 | 7_3:+31324778 | Msa1100890:CDS |
| ATGGTGGAAGTGATGCTTCT+GGG | 0.482585 | 7_3:+31324244 | Msa1100890:CDS |
| GTGAGATGCAAGAGAAGAGG+TGG | 0.483025 | 7_3:+31325507 | Msa1100890:CDS |
| GAAGTAAGAATGTCCATTGA+TGG | 0.484459 | 7_3:-31325541 | None:intergenic |
| TAGGTTGAGAAAGATCAAAA+TGG | 0.486595 | 7_3:-31324864 | None:intergenic |
| TGGTTTCGTCCCGGTTCAAA+CGG | 0.488905 | 7_3:+31325918 | Msa1100890:three_prime_UTR |
| GCCGTGGTGGTCATGCTAGC+TGG | 0.491703 | 7_3:+31324199 | Msa1100890:CDS |
| GTGTTGGGCTACTTAGAAGA+TGG | 0.492640 | 7_3:+31326105 | Msa1100890:three_prime_UTR |
| TCAAAGGTTCAAGATCTAGA+TGG | 0.498022 | 7_3:+31325619 | Msa1100890:CDS |
| ACCTTGAAAGGAGTTGTTTG+TGG | 0.504549 | 7_3:-31324025 | None:intergenic |
| CTTGCAAACCTGAAAGTGTA+GGG | 0.512505 | 7_3:+31326393 | Msa1100890:three_prime_UTR |
| ACTGACACACTTGAGCTGTT+GGG | 0.516623 | 7_3:-31323940 | None:intergenic |
| AGATCAAAATGGTGATTAGG+AGG | 0.519211 | 7_3:-31324853 | None:intergenic |
| GCAGTAACTATAATAGATCC+AGG | 0.520583 | 7_3:-31324796 | None:intergenic |
| AGCATTTGTAGATGATGTGC+TGG | 0.529065 | 7_3:+31326210 | Msa1100890:three_prime_UTR |
| TCAATGCTGCTCCTGCTGGA+TGG | 0.529981 | 7_3:+31325751 | Msa1100890:CDS |
| GTTGTTTGTGGAAATGGAAA+GGG | 0.530687 | 7_3:-31324013 | None:intergenic |
| GTTTCTCATTTGCTGAGGCA+TGG | 0.530802 | 7_3:-31326244 | None:intergenic |
| AAGTGATGCTTCTGGGACAA+TGG | 0.531264 | 7_3:+31324251 | Msa1100890:CDS |
| GCCACCAATTTCTGTCCACC+TGG | 0.533315 | 7_3:+31324817 | Msa1100890:CDS |
| AGTTACCTTCTGTAAGCTAC+AGG | 0.533493 | 7_3:-31324925 | None:intergenic |
| GTTCAACCGTGGTTTCGTCC+CGG | 0.536272 | 7_3:+31325909 | Msa1100890:three_prime_UTR |
| ATTAAAAGAAATCAGTTGAG+TGG | 0.543499 | 7_3:-31326598 | None:intergenic |
| AGAAGAAGATGAACCTTGAA+AGG | 0.544689 | 7_3:-31324037 | None:intergenic |
| AAAAGAATTTAGAGAACAAG+AGG | 0.545424 | 7_3:-31326555 | None:intergenic |
| AATTGGAAAGGAATAAATAG+AGG | 0.546487 | 7_3:-31323990 | None:intergenic |
| AGGGTGAGATGCAAGAGAAG+AGG | 0.548973 | 7_3:+31325504 | Msa1100890:intron |
| GTACTTGTCACAAATGTTGG+AGG | 0.553223 | 7_3:+31325570 | Msa1100890:CDS |
| GTACATTCTGTGGCCATCAA+AGG | 0.555005 | 7_3:+31325603 | Msa1100890:CDS |
| AGTTGTTTGTGGAAATGGAA+AGG | 0.555702 | 7_3:-31324014 | None:intergenic |
| TATGGAAACCTTTATAGCCA+AGG | 0.558405 | 7_3:+31324667 | Msa1100890:CDS |
| AACATTAATCTTTCTCAACA+TGG | 0.558853 | 7_3:-31326270 | None:intergenic |
| TAACCAATAATTAAAGTACA+AGG | 0.564183 | 7_3:-31326313 | None:intergenic |
| AGTGATGCTTCTGGGACAAT+GGG | 0.566887 | 7_3:+31324252 | Msa1100890:CDS |
| ATTTCTGTCCACCTGGTGGT+TGG | 0.569910 | 7_3:+31324824 | Msa1100890:CDS |
| GTTGAACTGCCTTCCAGTGT+AGG | 0.570697 | 7_3:-31325787 | None:intergenic |
| GCTCATGCTACTTTCTATGG+TGG | 0.573969 | 7_3:+31324228 | Msa1100890:CDS |
| GGCAAGTTTCTCATTTGCTG+AGG | 0.575355 | 7_3:-31326249 | None:intergenic |
| GTTTCTCATGTAAATGGCCG+TGG | 0.575595 | 7_3:+31324183 | Msa1100890:CDS |
| CAAGCCATGTCAAGGAATTG+GGG | 0.577427 | 7_3:+31325642 | Msa1100890:CDS |
| ACTTGCAAACCTGAAAGTGT+AGG | 0.582679 | 7_3:+31326392 | Msa1100890:three_prime_UTR |
| TGCTGGTGATGTACATTCTG+TGG | 0.583608 | 7_3:+31325593 | Msa1100890:CDS |
| TGACCAAAAGACCATCCAGC+AGG | 0.595163 | 7_3:-31325762 | None:intergenic |
| GGAGGGTCACACCAACCACC+AGG | 0.606947 | 7_3:-31324835 | None:intergenic |
| TTGGTCAGACCTACACTGGA+AGG | 0.609630 | 7_3:+31325778 | Msa1100890:CDS |
| AAATGGAAAGGGAATTGGAA+AGG | 0.609886 | 7_3:-31324002 | None:intergenic |
| CTAGATGGCAAGCCATGTCA+AGG | 0.612177 | 7_3:+31325634 | Msa1100890:CDS |
| ACCAATTTCTGTCCACCTGG+TGG | 0.612750 | 7_3:+31324820 | Msa1100890:CDS |
| AAAGTTGTTGAATCACGACT+TGG | 0.613137 | 7_3:+31325944 | Msa1100890:three_prime_UTR |
| GGGACGAAACCACGGTTGAA+CGG | 0.616061 | 7_3:-31325907 | None:intergenic |
| ACAAGAGGTACAATTGACAT+AGG | 0.619039 | 7_3:-31326540 | None:intergenic |
| TTCAACAATGGATTGAGTTG+TGG | 0.619250 | 7_3:+31324727 | Msa1100890:CDS |
| AGCACTGCACTATTCAACAA+TGG | 0.624923 | 7_3:+31324715 | Msa1100890:CDS |
| CCGCAAACTAACAATGTCGA+AGG | 0.625701 | 7_3:+31325870 | Msa1100890:three_prime_UTR |
| GATCCAGGATTACACCATTG+TGG | 0.626873 | 7_3:-31324781 | None:intergenic |
| TTGTACCTGTAGCTTACAGA+AGG | 0.627293 | 7_3:+31324920 | Msa1100890:CDS |
| ACCAGGTGGACAGAAATTGG+TGG | 0.636241 | 7_3:-31324818 | None:intergenic |
| GATCAAAATGGTGATTAGGA+GGG | 0.641492 | 7_3:-31324852 | None:intergenic |
| TTTGAACCGGGACGAAACCA+CGG | 0.642365 | 7_3:-31325915 | None:intergenic |
| ACATTGCTCAATATAGAGCA+GGG | 0.646744 | 7_3:+31324896 | Msa1100890:CDS |
| ATTACTTGTGGTGACAACAA+AGG | 0.647547 | 7_3:-31325709 | None:intergenic |
| TCTCATGTAAATGGCCGTGG+TGG | 0.654852 | 7_3:+31324186 | Msa1100890:CDS |
| GGTTCAAGAGAGAACAAACA+AGG | 0.656032 | 7_3:-31326438 | None:intergenic |
| GGGTCACACCAACCACCAGG+TGG | 0.687412 | 7_3:-31324832 | None:intergenic |
| TCCAGCTAGCATGACCACCA+CGG | 0.691439 | 7_3:-31324200 | None:intergenic |
| AAGCCATGTCAAGGAATTGG+GGG | 0.694892 | 7_3:+31325643 | Msa1100890:CDS |
| TTGCAAACCTGAAAGTGTAG+GGG | 0.696424 | 7_3:+31326394 | Msa1100890:three_prime_UTR |
| CACAAGTAATGGTCACAGTG+TGG | 0.698815 | 7_3:+31325722 | Msa1100890:CDS |
| CACACTGTGACCATTACTTG+TGG | 0.700863 | 7_3:-31325721 | None:intergenic |
| AATGTGTGAATGATCCACAA+TGG | 0.752509 | 7_3:+31324767 | Msa1100890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATATATAATAAAAAA+GGG | - | chr7_3:31326167-31326186 | None:intergenic | 0.0% |
| !!! | TAATAACATTTTTCTTTTAT+AGG | + | chr7_3:31324631-31324650 | Msa1100890:intron | 10.0% |
| !!! | TTGTTTTTGTAAAATAAAAT+CGG | + | chr7_3:31325026-31325045 | Msa1100890:intron | 10.0% |
| !!! | TTGATTTTGATTTTATTATA+TGG | + | chr7_3:31326185-31326204 | Msa1100890:three_prime_UTR | 10.0% |
| !! | AAATAAAAATGAATAATGTT+AGG | - | chr7_3:31326462-31326481 | None:intergenic | 10.0% |
| !!! | TAACATTATTCATTTTTATT+TGG | + | chr7_3:31326461-31326480 | Msa1100890:three_prime_UTR | 10.0% |
| !!! | ACGAAACTTTTTTATTTTTT+TGG | - | chr7_3:31325301-31325320 | None:intergenic | 15.0% |
| !!! | ATATAATCTCATTTTTTACT+TGG | - | chr7_3:31326627-31326646 | None:intergenic | 15.0% |
| !!! | CATTTCAACGATTTTTTTTA+CGG | - | chr7_3:31324548-31324567 | None:intergenic | 20.0% |
| !!! | TAACATTTTTCTTTTATAGG+TGG | + | chr7_3:31324634-31324653 | Msa1100890:intron | 20.0% |
| !!! | AACATTTTTCTTTTATAGGT+GGG | + | chr7_3:31324635-31324654 | Msa1100890:intron | 20.0% |
| !! | TTTATCTGAAAACAAGTTTA+TGG | + | chr7_3:31325091-31325110 | Msa1100890:intron | 20.0% |
| !!! | TGAATGAAGTTTTCATAATT+TGG | - | chr7_3:31325205-31325224 | None:intergenic | 20.0% |
| !!! | TGTATAGTAACTTTTATGTT+AGG | - | chr7_3:31325337-31325356 | None:intergenic | 20.0% |
| !!! | AGAATTTATTTTGTGTATGT+CGG | - | chr7_3:31325404-31325423 | None:intergenic | 20.0% |
| !!! | GATAATTTTCTTTTTGTTCT+TGG | + | chr7_3:31325474-31325493 | Msa1100890:intron | 20.0% |
| !! | TAACCTTGTACTTTAATTAT+TGG | + | chr7_3:31326310-31326329 | Msa1100890:three_prime_UTR | 20.0% |
| !! | TAACCAATAATTAAAGTACA+AGG | - | chr7_3:31326316-31326335 | None:intergenic | 20.0% |
| !!! | TATTGGTTAATGAATGTAAA+AGG | + | chr7_3:31326327-31326346 | Msa1100890:three_prime_UTR | 20.0% |
| !! | TTAATTGTGTGATAAAAAAG+AGG | + | chr7_3:31326357-31326376 | Msa1100890:three_prime_UTR | 20.0% |
| ! | AATTGGAAAGGAATAAATAG+AGG | - | chr7_3:31323993-31324012 | None:intergenic | 25.0% |
| ! | ACAAGTGAAAGAAAAAAGAA+AGG | - | chr7_3:31324090-31324109 | None:intergenic | 25.0% |
| !! | TTCAGAAAGCAAACAAATTT+TGG | + | chr7_3:31324404-31324423 | Msa1100890:intron | 25.0% |
| ! | ATAAATTTCATGAAGTCACA+CGG | - | chr7_3:31324507-31324526 | None:intergenic | 25.0% |
| !! | ACATTTTTCTTTTATAGGTG+GGG | + | chr7_3:31324636-31324655 | Msa1100890:intron | 25.0% |
| !!! | AAGTAACTTTTTAGCTATCT+AGG | - | chr7_3:31325140-31325159 | None:intergenic | 25.0% |
| ! | TTTGAAGATAAAGTCGATTA+TGG | + | chr7_3:31325169-31325188 | Msa1100890:intron | 25.0% |
| !! | TTTTTGTTCTTGGATTTTGA+AGG | + | chr7_3:31325484-31325503 | Msa1100890:intron | 25.0% |
| !! | TTTTGTTCTTGGATTTTGAA+GGG | + | chr7_3:31325485-31325504 | Msa1100890:intron | 25.0% |
| !!! | TTTAAGTTGAGTAGTGTAAA+TGG | + | chr7_3:31326073-31326092 | Msa1100890:three_prime_UTR | 25.0% |
| !!! | TTAAGTTGAGTAGTGTAAAT+GGG | + | chr7_3:31326074-31326093 | Msa1100890:three_prime_UTR | 25.0% |
| ! | TAAATGGGATTTATTAGTGT+TGG | + | chr7_3:31326089-31326108 | Msa1100890:three_prime_UTR | 25.0% |
| ! | AAATGGGATTTATTAGTGTT+GGG | + | chr7_3:31326090-31326109 | Msa1100890:three_prime_UTR | 25.0% |
| ! | TTTGCCTCAAAAAAAAAGAA+GGG | - | chr7_3:31326136-31326155 | None:intergenic | 25.0% |
| ! | ATTTGCCTCAAAAAAAAAGA+AGG | - | chr7_3:31326137-31326156 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTTTTGAGGCAAA+TGG | + | chr7_3:31326136-31326155 | Msa1100890:three_prime_UTR | 25.0% |
| ! | AACATTAATCTTTCTCAACA+TGG | - | chr7_3:31326273-31326292 | None:intergenic | 25.0% |
| !! | TAAGACATTTTACATCTTAG+TGG | + | chr7_3:31326496-31326515 | Msa1100890:three_prime_UTR | 25.0% |
| ! | AAAAGAATTTAGAGAACAAG+AGG | - | chr7_3:31326558-31326577 | None:intergenic | 25.0% |
| !! | TGGAAGTAACTTGTATTATA+AGG | - | chr7_3:31326581-31326600 | None:intergenic | 25.0% |
| ! | ATTAAAAGAAATCAGTTGAG+TGG | - | chr7_3:31326601-31326620 | None:intergenic | 25.0% |
| TCTCTATGCTTCATTTATGT+AGG | + | chr7_3:31324117-31324136 | Msa1100890:intron | 30.0% | |
| !!! | TCTTCTTGCTATTTTCTACA+TGG | + | chr7_3:31324161-31324180 | Msa1100890:CDS | 30.0% |
| TACATGGTTTCTCATGTAAA+TGG | + | chr7_3:31324177-31324196 | Msa1100890:CDS | 30.0% | |
| AACAAACATCTTAACGAACT+TGG | + | chr7_3:31324317-31324336 | Msa1100890:intron | 30.0% | |
| TTTACGGTTGAAGATTTCTA+CGG | - | chr7_3:31324532-31324551 | None:intergenic | 30.0% | |
| GAAAGATCAAAATGGTGATT+AGG | - | chr7_3:31324859-31324878 | None:intergenic | 30.0% | |
| ! | TAGGTTGAGAAAGATCAAAA+TGG | - | chr7_3:31324867-31324886 | None:intergenic | 30.0% |
| TGAGCAATGTGTTGAAAAAT+AGG | - | chr7_3:31324886-31324905 | None:intergenic | 30.0% | |
| GACTTGAAATGATTGATGTT+TGG | + | chr7_3:31325240-31325259 | Msa1100890:intron | 30.0% | |
| ATAGTAAAAGCGAAGTTTGA+AGG | + | chr7_3:31325363-31325382 | Msa1100890:intron | 30.0% | |
| TTAGTACTTGTCACAAATGT+TGG | + | chr7_3:31325567-31325586 | Msa1100890:CDS | 30.0% | |
| CAAAGTAACTCTTACCTTAA+TGG | + | chr7_3:31325675-31325694 | Msa1100890:CDS | 30.0% | |
| !!! | GTTTTTAAAACCGAATCGAA+TGG | + | chr7_3:31325833-31325852 | Msa1100890:three_prime_UTR | 30.0% |
| ATTGGTTAAACCATTCGATT+CGG | - | chr7_3:31325846-31325865 | None:intergenic | 30.0% | |
| !! | TTGCTGGTTTATTTCTGATT+CGG | + | chr7_3:31325972-31325991 | Msa1100890:three_prime_UTR | 30.0% |
| !!! | TTAGCCCTTCTTTTTTTTTG+AGG | + | chr7_3:31326129-31326148 | Msa1100890:three_prime_UTR | 30.0% |
| ! | TACATCTTAGTGGATCTATT+AGG | + | chr7_3:31326506-31326525 | Msa1100890:three_prime_UTR | 30.0% |
| ! | ACATCTTAGTGGATCTATTA+GGG | + | chr7_3:31326507-31326526 | Msa1100890:three_prime_UTR | 30.0% |
| GTACAATTGACATAGGTATA+AGG | - | chr7_3:31326536-31326555 | None:intergenic | 30.0% | |
| AAATGGAAAGGGAATTGGAA+AGG | - | chr7_3:31324005-31324024 | None:intergenic | 35.0% | |
| GTTGTTTGTGGAAATGGAAA+GGG | - | chr7_3:31324016-31324035 | None:intergenic | 35.0% | |
| AGTTGTTTGTGGAAATGGAA+AGG | - | chr7_3:31324017-31324036 | None:intergenic | 35.0% | |
| AAAGGAGTTGTTTGTGGAAA+TGG | - | chr7_3:31324022-31324041 | None:intergenic | 35.0% | |
| AGAAGAAGATGAACCTTGAA+AGG | - | chr7_3:31324040-31324059 | None:intergenic | 35.0% | |
| !! | AATGCTCATGCTACTTTCTA+TGG | + | chr7_3:31324225-31324244 | Msa1100890:CDS | 35.0% |
| GACAGTGAAGATTTCAAACT+TGG | - | chr7_3:31324452-31324471 | None:intergenic | 35.0% | |
| TATGGAAACCTTTATAGCCA+AGG | + | chr7_3:31324667-31324686 | Msa1100890:CDS | 35.0% | |
| AACCTTTATAGCCAAGGTTA+TGG | + | chr7_3:31324673-31324692 | Msa1100890:CDS | 35.0% | |
| TTCCATAACCTTGGCTATAA+AGG | - | chr7_3:31324678-31324697 | None:intergenic | 35.0% | |
| CTGTATTTGTTCCATAACCT+TGG | - | chr7_3:31324687-31324706 | None:intergenic | 35.0% | |
| !! | TTCAACAATGGATTGAGTTG+TGG | + | chr7_3:31324727-31324746 | Msa1100890:CDS | 35.0% |
| AATGTGTGAATGATCCACAA+TGG | + | chr7_3:31324767-31324786 | Msa1100890:CDS | 35.0% | |
| GCAGTAACTATAATAGATCC+AGG | - | chr7_3:31324799-31324818 | None:intergenic | 35.0% | |
| GATCAAAATGGTGATTAGGA+GGG | - | chr7_3:31324855-31324874 | None:intergenic | 35.0% | |
| AGATCAAAATGGTGATTAGG+AGG | - | chr7_3:31324856-31324875 | None:intergenic | 35.0% | |
| ACATTGCTCAATATAGAGCA+GGG | + | chr7_3:31324896-31324915 | Msa1100890:CDS | 35.0% | |
| GGAATTAGATTCACCATCAA+TGG | + | chr7_3:31325528-31325547 | Msa1100890:CDS | 35.0% | |
| GAAGTAAGAATGTCCATTGA+TGG | - | chr7_3:31325544-31325563 | None:intergenic | 35.0% | |
| TCTAGATCTTGAACCTTTGA+TGG | - | chr7_3:31325619-31325638 | None:intergenic | 35.0% | |
| TCAAAGGTTCAAGATCTAGA+TGG | + | chr7_3:31325619-31325638 | Msa1100890:CDS | 35.0% | |
| AGGAAAGACTTTGTCCATTA+AGG | - | chr7_3:31325692-31325711 | None:intergenic | 35.0% | |
| ATTACTTGTGGTGACAACAA+AGG | - | chr7_3:31325712-31325731 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCACCACAAGTAA+TGG | + | chr7_3:31325711-31325730 | Msa1100890:CDS | 35.0% |
| !! | TTGTTAGTTTGCGGTTCAAT+TGG | - | chr7_3:31325864-31325883 | None:intergenic | 35.0% |
| AACTTTAAACCGTTTGAACC+GGG | - | chr7_3:31325930-31325949 | None:intergenic | 35.0% | |
| CAACTTTAAACCGTTTGAAC+CGG | - | chr7_3:31325931-31325950 | None:intergenic | 35.0% | |
| AAAGTTGTTGAATCACGACT+TGG | + | chr7_3:31325944-31325963 | Msa1100890:three_prime_UTR | 35.0% | |
| ! | ACAAGAGGTACAATTGACAT+AGG | - | chr7_3:31326543-31326562 | None:intergenic | 35.0% |
| TGTGGAAATGGAAAGGGAAT+TGG | - | chr7_3:31324010-31324029 | None:intergenic | 40.0% | |
| TCCACAAACAACTCCTTTCA+AGG | + | chr7_3:31324024-31324043 | Msa1100890:five_prime_UTR | 40.0% | |
| ACCTTGAAAGGAGTTGTTTG+TGG | - | chr7_3:31324028-31324047 | None:intergenic | 40.0% | |
| AGCTCATGCATACAACACAT+TGG | + | chr7_3:31324356-31324375 | Msa1100890:intron | 40.0% | |
| TACAACACATTGGTCATCGT+TGG | + | chr7_3:31324366-31324385 | Msa1100890:intron | 40.0% | |
| AGCACTGCACTATTCAACAA+TGG | + | chr7_3:31324715-31324734 | Msa1100890:CDS | 40.0% | |
| CACATTGCTCAATATAGAGC+AGG | + | chr7_3:31324895-31324914 | Msa1100890:CDS | 40.0% | |
| TTGTACCTGTAGCTTACAGA+AGG | + | chr7_3:31324920-31324939 | Msa1100890:CDS | 40.0% | |
| AGTTACCTTCTGTAAGCTAC+AGG | - | chr7_3:31324928-31324947 | None:intergenic | 40.0% | |
| !!! | TGTGTGTGTGCTTGGTTTTA+GGG | - | chr7_3:31325438-31325457 | None:intergenic | 40.0% |
| GTACTTGTCACAAATGTTGG+AGG | + | chr7_3:31325570-31325589 | Msa1100890:CDS | 40.0% | |
| ! | CCTTCGACATTGTTAGTTTG+CGG | - | chr7_3:31325873-31325892 | None:intergenic | 40.0% |
| ! | TTCTTTTAACCGTTCAACCG+TGG | + | chr7_3:31325898-31325917 | Msa1100890:three_prime_UTR | 40.0% |
| AGCATTTGTAGATGATGTGC+TGG | + | chr7_3:31326210-31326229 | Msa1100890:three_prime_UTR | 40.0% | |
| ! | CAGGTTTGCAAGTTGAAGTT+AGG | - | chr7_3:31326385-31326404 | None:intergenic | 40.0% |
| ! | ACTTGCAAACCTGAAAGTGT+AGG | + | chr7_3:31326392-31326411 | Msa1100890:three_prime_UTR | 40.0% |
| ! | CTTGCAAACCTGAAAGTGTA+GGG | + | chr7_3:31326393-31326412 | Msa1100890:three_prime_UTR | 40.0% |
| ! | TTGCAAACCTGAAAGTGTAG+GGG | + | chr7_3:31326394-31326413 | Msa1100890:three_prime_UTR | 40.0% |
| GGTTCAAGAGAGAACAAACA+AGG | - | chr7_3:31326441-31326460 | None:intergenic | 40.0% | |
| ACTGACACACTTGAGCTGTT+GGG | - | chr7_3:31323943-31323962 | None:intergenic | 45.0% | |
| AACTGACACACTTGAGCTGT+TGG | - | chr7_3:31323944-31323963 | None:intergenic | 45.0% | |
| GTTTCTCATGTAAATGGCCG+TGG | + | chr7_3:31324183-31324202 | Msa1100890:CDS | 45.0% | |
| !! | GCTCATGCTACTTTCTATGG+TGG | + | chr7_3:31324228-31324247 | Msa1100890:CDS | 45.0% |
| ! | TATGGTGGAAGTGATGCTTC+TGG | + | chr7_3:31324243-31324262 | Msa1100890:CDS | 45.0% |
| ! | ATGGTGGAAGTGATGCTTCT+GGG | + | chr7_3:31324244-31324263 | Msa1100890:CDS | 45.0% |
| !! | AAGTGATGCTTCTGGGACAA+TGG | + | chr7_3:31324251-31324270 | Msa1100890:CDS | 45.0% |
| !! | AGTGATGCTTCTGGGACAAT+GGG | + | chr7_3:31324252-31324271 | Msa1100890:CDS | 45.0% |
| TATGCATGAGCTTGTGACTC+TGG | - | chr7_3:31324348-31324367 | None:intergenic | 45.0% | |
| ! | TCTTTTATAGGTGGGGCTTG+TGG | + | chr7_3:31324643-31324662 | Msa1100890:intron | 45.0% |
| GATCCACAATGGTGTAATCC+TGG | + | chr7_3:31324778-31324797 | Msa1100890:CDS | 45.0% | |
| GATCCAGGATTACACCATTG+TGG | - | chr7_3:31324784-31324803 | None:intergenic | 45.0% | |
| !! | GTGTGTGTGTGCTTGGTTTT+AGG | - | chr7_3:31325439-31325458 | None:intergenic | 45.0% |
| GACTATAGTGTGTGTGTGCT+TGG | - | chr7_3:31325446-31325465 | None:intergenic | 45.0% | |
| ! | TGCTGGTGATGTACATTCTG+TGG | + | chr7_3:31325593-31325612 | Msa1100890:CDS | 45.0% |
| GTACATTCTGTGGCCATCAA+AGG | + | chr7_3:31325603-31325622 | Msa1100890:CDS | 45.0% | |
| GCAAGCCATGTCAAGGAATT+GGG | + | chr7_3:31325641-31325660 | Msa1100890:CDS | 45.0% | |
| CAAGCCATGTCAAGGAATTG+GGG | + | chr7_3:31325642-31325661 | Msa1100890:CDS | 45.0% | |
| AAGCCATGTCAAGGAATTGG+GGG | + | chr7_3:31325643-31325662 | Msa1100890:CDS | 45.0% | |
| CAAGGAATTGGGGGCAAAAT+TGG | + | chr7_3:31325652-31325671 | Msa1100890:CDS | 45.0% | |
| CACACTGTGACCATTACTTG+TGG | - | chr7_3:31325724-31325743 | None:intergenic | 45.0% | |
| CACAAGTAATGGTCACAGTG+TGG | + | chr7_3:31325722-31325741 | Msa1100890:CDS | 45.0% | |
| ! | TCTTTTGGTCAGACCTACAC+TGG | + | chr7_3:31325774-31325793 | Msa1100890:CDS | 45.0% |
| CCGCAAACTAACAATGTCGA+AGG | + | chr7_3:31325870-31325889 | Msa1100890:three_prime_UTR | 45.0% | |
| !! | TCACGACTTGGAAGTTTTGC+TGG | + | chr7_3:31325956-31325975 | Msa1100890:three_prime_UTR | 45.0% |
| GTGTTGGGCTACTTAGAAGA+TGG | + | chr7_3:31326105-31326124 | Msa1100890:three_prime_UTR | 45.0% | |
| ! | GTTTCTCATTTGCTGAGGCA+TGG | - | chr7_3:31326247-31326266 | None:intergenic | 45.0% |
| ! | GGCAAGTTTCTCATTTGCTG+AGG | - | chr7_3:31326252-31326271 | None:intergenic | 45.0% |
| !! | CAAAATATATATAATAAAAA+AGG | - | chr7_3:31326168-31326187 | None:intergenic | 5.0% |
| TCTCATGTAAATGGCCGTGG+TGG | + | chr7_3:31324186-31324205 | Msa1100890:CDS | 50.0% | |
| CGATCCAACGACTACTGATG+TGG | + | chr7_3:31324478-31324497 | Msa1100890:intron | 50.0% | |
| GTCACCACATCAGTAGTCGT+TGG | - | chr7_3:31324485-31324504 | None:intergenic | 50.0% | |
| ATAGGTGGGGCTTGTGGATA+TGG | + | chr7_3:31324649-31324668 | Msa1100890:intron | 50.0% | |
| ACCAGGTGGACAGAAATTGG+TGG | - | chr7_3:31324821-31324840 | None:intergenic | 50.0% | |
| ACCAATTTCTGTCCACCTGG+TGG | + | chr7_3:31324820-31324839 | Msa1100890:CDS | 50.0% | |
| ACCACCAGGTGGACAGAAAT+TGG | - | chr7_3:31324824-31324843 | None:intergenic | 50.0% | |
| ATTTCTGTCCACCTGGTGGT+TGG | + | chr7_3:31324824-31324843 | Msa1100890:CDS | 50.0% | |
| AGGGTGAGATGCAAGAGAAG+AGG | + | chr7_3:31325504-31325523 | Msa1100890:intron | 50.0% | |
| GTGAGATGCAAGAGAAGAGG+TGG | + | chr7_3:31325507-31325526 | Msa1100890:CDS | 50.0% | |
| ! | GTCACAAATGTTGGAGGTGC+TGG | + | chr7_3:31325576-31325595 | Msa1100890:CDS | 50.0% |
| CTAGATGGCAAGCCATGTCA+AGG | + | chr7_3:31325634-31325653 | Msa1100890:CDS | 50.0% | |
| GGCAAGCCATGTCAAGGAAT+TGG | + | chr7_3:31325640-31325659 | Msa1100890:CDS | 50.0% | |
| TTGCCCCCAATTCCTTGACA+TGG | - | chr7_3:31325649-31325668 | None:intergenic | 50.0% | |
| TCATTCAATGCTGCTCCTGC+TGG | + | chr7_3:31325747-31325766 | Msa1100890:CDS | 50.0% | |
| TGACCAAAAGACCATCCAGC+AGG | - | chr7_3:31325765-31325784 | None:intergenic | 50.0% | |
| TTGGTCAGACCTACACTGGA+AGG | + | chr7_3:31325778-31325797 | Msa1100890:CDS | 50.0% | |
| GTTGAACTGCCTTCCAGTGT+AGG | - | chr7_3:31325790-31325809 | None:intergenic | 50.0% | |
| TTTGAACCGGGACGAAACCA+CGG | - | chr7_3:31325918-31325937 | None:intergenic | 50.0% | |
| TGGTTTCGTCCCGGTTCAAA+CGG | + | chr7_3:31325918-31325937 | Msa1100890:three_prime_UTR | 50.0% | |
| GTAGTGTCCCCTACACTTTC+AGG | - | chr7_3:31326404-31326423 | None:intergenic | 50.0% | |
| TCCAGCTAGCATGACCACCA+CGG | - | chr7_3:31324203-31324222 | None:intergenic | 55.0% | |
| GCCACCAATTTCTGTCCACC+TGG | + | chr7_3:31324817-31324836 | Msa1100890:CDS | 55.0% | |
| TCAATGCTGCTCCTGCTGGA+TGG | + | chr7_3:31325751-31325770 | Msa1100890:CDS | 55.0% | |
| ! | GCTCCTGCTGGATGGTCTTT+TGG | + | chr7_3:31325759-31325778 | Msa1100890:CDS | 55.0% |
| GGGACGAAACCACGGTTGAA+CGG | - | chr7_3:31325910-31325929 | None:intergenic | 55.0% | |
| GTTCAACCGTGGTTTCGTCC+CGG | + | chr7_3:31325909-31325928 | Msa1100890:three_prime_UTR | 55.0% | |
| GCCGTGGTGGTCATGCTAGC+TGG | + | chr7_3:31324199-31324218 | Msa1100890:CDS | 65.0% | |
| GGGTCACACCAACCACCAGG+TGG | - | chr7_3:31324835-31324854 | None:intergenic | 65.0% | |
| GGAGGGTCACACCAACCACC+AGG | - | chr7_3:31324838-31324857 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 31323922 | 31326652 | 31323922 | ID=Msa1100890;Name=Msa1100890 |
| chr7_3 | mRNA | 31323922 | 31326652 | 31323922 | ID=Msa1100890-mRNA-1;Parent=Msa1100890;Name=Msa1100890-mRNA-1;_AED=0.12;_eAED=0.12;_QI=129|1|1|1|0.66|0.5|4|837|242 |
| chr7_3 | exon | 31323922 | 31324045 | 31323922 | ID=Msa1100890-mRNA-1:exon:6640;Parent=Msa1100890-mRNA-1 |
| chr7_3 | exon | 31324139 | 31324273 | 31324139 | ID=Msa1100890-mRNA-1:exon:6641;Parent=Msa1100890-mRNA-1 |
| chr7_3 | exon | 31324653 | 31324941 | 31324653 | ID=Msa1100890-mRNA-1:exon:6642;Parent=Msa1100890-mRNA-1 |
| chr7_3 | exon | 31325506 | 31326652 | 31325506 | ID=Msa1100890-mRNA-1:exon:6643;Parent=Msa1100890-mRNA-1 |
| chr7_3 | five_prime_UTR | 31323922 | 31324045 | 31323922 | ID=Msa1100890-mRNA-1:five_prime_utr;Parent=Msa1100890-mRNA-1 |
| chr7_3 | five_prime_UTR | 31324139 | 31324143 | 31324139 | ID=Msa1100890-mRNA-1:five_prime_utr;Parent=Msa1100890-mRNA-1 |
| chr7_3 | CDS | 31324144 | 31324273 | 31324144 | ID=Msa1100890-mRNA-1:cds;Parent=Msa1100890-mRNA-1 |
| chr7_3 | CDS | 31324653 | 31324941 | 31324653 | ID=Msa1100890-mRNA-1:cds;Parent=Msa1100890-mRNA-1 |
| chr7_3 | CDS | 31325506 | 31325815 | 31325506 | ID=Msa1100890-mRNA-1:cds;Parent=Msa1100890-mRNA-1 |
| chr7_3 | three_prime_UTR | 31325816 | 31326652 | 31325816 | ID=Msa1100890-mRNA-1:three_prime_utr;Parent=Msa1100890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
