AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1100950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100950 MtrunA17_Chr7g0217581 89.117 487 42 3 1 477 98 583 0.0 870
Msa1100950 MtrunA17_Chr6g0453321 56.313 499 192 10 1 477 1 495 4.69e-170 488
Msa1100950 MtrunA17_Chr4g0042481 42.857 497 228 12 1 475 1 463 9.60e-112 338
Msa1100950 MtrunA17_Chr3g0092111 39.847 522 212 19 1 477 1 465 3.18e-89 280
Msa1100950 MtrunA17_Chr5g0417601 37.654 486 181 15 4 475 2 379 8.51e-70 227
Msa1100950 MtrunA17_Chr8g0355261 34.888 493 239 21 3 476 9 438 1.50e-66 220
Msa1100950 MtrunA17_Chr5g0417561 35.579 475 188 18 4 475 2 361 8.76e-66 216
Msa1100950 MtrunA17_Chr5g0417551 35.041 488 181 20 4 475 2 369 5.31e-62 206
Msa1100950 MtrunA17_Chr7g0254161 34.651 430 195 14 78 476 49 423 2.84e-50 177
Msa1100950 MtrunA17_Chr5g0417571 41.434 251 119 7 6 238 4 244 2.72e-40 147
Msa1100950 MtrunA17_Chr6g0460731 37.282 287 97 10 2 253 7 245 7.62e-40 147
Msa1100950 MtrunA17_Chr6g0460721 64.211 95 34 0 95 189 48 142 3.69e-37 139
Msa1100950 MtrunA17_Chr2g0283811 83.333 60 10 0 130 189 41 100 2.58e-33 123
Msa1100950 MtrunA17_Chr3g0127201 66.667 60 20 0 133 192 24 83 8.94e-25 103
Msa1100950 MtrunA17_Chr8g0374111 68.966 58 18 0 136 193 29 86 1.60e-24 101
Msa1100950 MtrunA17_Chr8g0346551 66.102 59 20 0 131 189 19 77 3.83e-24 101
Msa1100950 MtrunA17_Chr8g0374251 75.472 53 13 0 138 190 70 122 3.99e-24 103
Msa1100950 MtrunA17_Chr2g0326001 56.098 82 28 1 108 189 20 93 4.62e-24 102
Msa1100950 MtrunA17_Chr4g0061761 71.698 53 15 0 134 186 38 90 4.70e-24 102
Msa1100950 MtrunA17_Chr1g0177251 59.211 76 30 1 131 205 6 81 5.55e-24 101
Msa1100950 MtrunA17_Chr8g0341671 73.077 52 14 0 136 187 20 71 6.78e-24 99.8
Msa1100950 MtrunA17_Chr2g0308011 75.510 49 12 0 136 184 37 85 8.76e-24 99.0
Msa1100950 MtrunA17_Chr4g0010151 61.290 62 24 0 128 189 74 135 9.87e-24 102
Msa1100950 MtrunA17_Chr4g0047001 47.222 108 41 3 93 189 6 108 1.10e-23 102
Msa1100950 MtrunA17_Chr2g0328021 66.667 57 19 0 138 194 64 120 1.73e-23 100
Msa1100950 MtrunA17_Chr7g0223311 41.176 119 68 2 86 203 28 145 1.78e-23 101
Msa1100950 MtrunA17_Chr8g0367161 52.000 75 36 0 115 189 11 85 3.09e-23 100
Msa1100950 MtrunA17_Chr4g0030051 66.154 65 21 1 125 188 29 93 4.09e-23 99.0
Msa1100950 MtrunA17_Chr3g0126201 68.421 57 17 1 134 189 48 104 7.25e-23 99.4
Msa1100950 MtrunA17_Chr1g0188851 67.925 53 17 0 136 188 43 95 8.59e-23 98.2
Msa1100950 MtrunA17_Chr4g0031411 63.333 60 22 0 129 188 68 127 1.22e-22 98.6
Msa1100950 MtrunA17_Chr2g0282051 74.074 54 13 1 136 189 46 98 5.81e-22 95.5
Msa1100950 MtrunA17_Chr5g0411951 65.455 55 19 0 132 186 39 93 7.03e-22 96.7
Msa1100950 MtrunA17_Chr2g0282441 72.000 50 14 0 138 187 27 76 1.15e-21 95.9
Msa1100950 MtrunA17_Chr2g0282511 73.469 49 13 0 136 184 45 93 1.61e-21 95.1
Msa1100950 MtrunA17_Chr4g0047761 69.231 52 16 0 138 189 74 125 1.68e-21 95.1
Msa1100950 MtrunA17_Chr7g0237921 69.231 52 16 0 138 189 78 129 1.75e-21 95.5
Msa1100950 MtrunA17_Chr3g0117601 59.091 66 26 1 122 186 46 111 3.50e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100950 AT5G39660.3 41.051 514 202 19 6 477 3 457 1.06e-89 281
Msa1100950 AT5G39660.1 41.051 514 202 19 6 477 3 457 1.06e-89 281
Msa1100950 AT5G39660.2 41.051 514 202 19 6 477 3 457 1.06e-89 281
Msa1100950 AT3G47500.1 41.093 494 223 23 1 475 2 446 1.56e-81 260
Msa1100950 AT5G62430.1 38.095 378 122 16 108 475 21 296 3.09e-55 186
Msa1100950 AT1G69570.1 33.065 496 212 20 1 476 1 396 2.43e-50 176
Msa1100950 AT1G26790.1 31.263 499 186 24 1 476 7 371 2.00e-38 144
Msa1100950 AT1G29160.1 85.000 60 9 0 130 189 56 115 5.66e-35 129
Msa1100950 AT2G34140.1 81.667 60 11 0 130 189 52 111 4.43e-33 123
Msa1100950 AT5G60200.1 58.333 72 30 0 132 203 51 122 1.97e-25 105
Msa1100950 AT3G45610.1 45.263 95 52 0 101 195 5 99 4.17e-25 103
Msa1100950 AT5G60850.1 73.214 56 15 0 136 191 51 106 5.75e-25 105
Msa1100950 AT1G51700.1 68.421 57 18 0 136 192 33 89 1.89e-24 100
Msa1100950 AT3G61850.2 60.870 69 27 0 124 192 50 118 3.02e-24 102
Msa1100950 AT3G61850.3 60.870 69 27 0 124 192 50 118 3.02e-24 102
Msa1100950 AT3G61850.1 60.870 69 27 0 124 192 62 130 3.62e-24 102
Msa1100950 AT3G61850.5 60.870 69 27 0 124 192 50 118 5.11e-24 102
Msa1100950 AT3G61850.4 60.870 69 27 0 124 192 62 130 5.54e-24 102
Msa1100950 AT3G50410.1 68.966 58 18 0 136 193 30 87 7.23e-24 100
Msa1100950 AT3G55370.1 65.000 60 21 0 132 191 72 131 1.31e-23 101
Msa1100950 AT3G21270.1 76.471 51 12 0 138 188 31 81 1.32e-23 98.6
Msa1100950 AT3G55370.2 65.000 60 21 0 132 191 72 131 1.36e-23 102
Msa1100950 AT4G24060.1 68.421 57 18 0 133 189 50 106 1.43e-23 102
Msa1100950 AT3G55370.3 65.000 60 21 0 132 191 117 176 1.59e-23 102
Msa1100950 AT1G07640.1 68.333 60 18 1 138 196 23 82 1.75e-23 100
Msa1100950 AT2G28510.1 67.797 59 19 0 138 196 50 108 1.78e-23 100
Msa1100950 AT1G07640.2 68.333 60 18 1 138 196 79 138 2.75e-23 100
Msa1100950 AT1G07640.3 68.333 60 18 1 138 196 87 146 3.54e-23 100
Msa1100950 AT4G38000.1 55.844 77 29 2 135 210 40 112 4.52e-23 98.6
Msa1100950 AT2G28810.2 62.295 61 23 0 127 187 68 128 5.41e-23 99.8
Msa1100950 AT2G37590.1 56.061 66 29 0 124 189 77 142 6.68e-23 99.8
Msa1100950 AT5G66940.1 35.393 178 90 6 136 290 32 207 7.02e-23 97.4
Msa1100950 AT2G28810.1 62.295 61 23 0 127 187 85 145 8.11e-23 99.8
Msa1100950 AT1G28310.1 72.222 54 15 0 136 189 27 80 1.07e-22 99.0
Msa1100950 AT1G28310.2 72.222 54 15 0 136 189 51 104 1.75e-22 98.6
Msa1100950 AT5G65590.1 67.857 56 18 0 136 191 41 96 2.21e-22 97.8
Msa1100950 AT3G52440.2 43.299 97 49 2 110 200 12 108 2.23e-22 97.1
Msa1100950 AT1G64620.1 67.308 52 17 0 133 184 46 97 2.81e-22 98.2
Msa1100950 AT3G52440.1 57.353 68 28 1 134 200 22 89 3.28e-22 95.9
Msa1100950 AT1G21340.1 64.286 56 20 0 138 193 40 95 4.15e-22 95.9
Msa1100950 AT1G47655.1 71.429 49 14 0 136 184 29 77 1.12e-21 93.6
Msa1100950 AT4G00940.1 64.407 59 21 0 131 189 63 121 1.21e-21 95.5
Msa1100950 AT4G00940.3 64.407 59 21 0 131 189 63 121 1.21e-21 95.5
Msa1100950 AT4G00940.2 64.407 59 21 0 131 189 63 121 1.21e-21 95.5
Msa1100950 AT5G02460.1 63.793 58 21 0 132 189 91 148 1.81e-21 96.7
Msa1100950 AT2G46590.1 42.268 97 55 1 87 183 20 115 3.41e-21 95.1
Msa1100950 AT2G46590.2 42.268 97 55 1 87 183 32 127 4.15e-21 95.1
Msa1100950 AT4G21050.1 58.209 67 28 0 123 189 11 77 5.39e-21 91.7
Msa1100950 AT5G62940.1 62.295 61 22 1 127 186 63 123 3.13e-20 92.8
Msa1100950 AT4G21040.1 62.264 53 20 0 138 190 27 79 2.44e-18 84.3
Msa1100950 AT4G21080.1 60.377 53 21 0 138 190 27 79 1.32e-17 82.8
Msa1100950 AT4G21030.1 59.091 44 18 0 138 181 23 66 1.52e-11 63.9

Find 129 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTAGTTGAAACTTTA+TGG 0.068102 7_3:-31382057 Msa1100950:three_prime_UTR
CCAACATGAATTTCTGAAAT+TGG 0.133092 7_3:+31385131 None:intergenic
TCATAATCACTTATATATTT+TGG 0.145452 7_3:-31382486 Msa1100950:exon
CATTCTATCCTGCAACTTAT+TGG 0.150210 7_3:-31382914 Msa1100950:CDS
CTAATCTGGCATGGTTTATT+AGG 0.185719 7_3:-31382085 Msa1100950:three_prime_UTR
ATTCTATCCTGCAACTTATT+GGG 0.232977 7_3:-31382913 Msa1100950:CDS
CTGAACAAGAACCACATTAA+TGG 0.264740 7_3:-31382290 Msa1100950:three_prime_UTR
GGGTTCAATTTGTACTTTCC+TGG 0.266809 7_3:-31382148 Msa1100950:three_prime_UTR
TCCTCCGCGAAGACTCTTTC+AGG 0.296594 7_3:-31382613 Msa1100950:CDS
GCAAGAACTGCCAGAGATAT+TGG 0.302290 7_3:-31383427 Msa1100950:CDS
CTCTTAGATGTATATAAATA+AGG 0.319140 7_3:-31382188 Msa1100950:three_prime_UTR
GAGAGTTTGTAGTAGAGTTA+TGG 0.354581 7_3:+31382823 None:intergenic
TTGGTTGCGTCAAACTGATT+TGG 0.359459 7_3:-31382452 Msa1100950:three_prime_UTR
GACTCTGCGATCAAACTGTT+TGG 0.377035 7_3:-31385164 Msa1100950:CDS
CAATGTAGCAACCTCCCTTT+CGG 0.382427 7_3:+31383610 None:intergenic
GCCAACCGAACAGAAGAAAA+AGG 0.384313 7_3:-31382340 Msa1100950:three_prime_UTR
AGCTCTTTCTGGACAACCCT+TGG 0.392158 7_3:-31382663 Msa1100950:CDS
ATCCTCCCCTTGTTCTTCAC+TGG 0.395303 7_3:+31383148 None:intergenic
GTGCAAAATTACACAAGAAA+TGG 0.400392 7_3:-31383212 Msa1100950:CDS
TGCACCTTCCGTCGACTTTG+TGG 0.406190 7_3:+31383100 None:intergenic
CCTTGTTCTTCACTGGTATG+AGG 0.408705 7_3:+31383155 None:intergenic
TATATACATCTAAGAGGTCT+TGG 0.409722 7_3:+31382195 None:intergenic
CTCCCTTGAATGTTTACCTA+AGG 0.416607 7_3:+31382797 None:intergenic
CTTGAATGTTTACCTAAGGT+TGG 0.421534 7_3:+31382801 None:intergenic
AACGGTACAATCCTTACATT+TGG 0.421611 7_3:-31383293 Msa1100950:CDS
TTATATATACATGAACTAAC+AGG 0.424598 7_3:+31382255 None:intergenic
TCAGTTCTAGAAGTTGCATC+TGG 0.425578 7_3:+31383656 None:intergenic
CAACCTTAGGTAAACATTCA+AGG 0.427611 7_3:-31382800 Msa1100950:CDS
AAGCGACACTTCAGAATTCT+CGG 0.433945 7_3:-31383337 Msa1100950:CDS
TTCAAAGACCGAAGAAGAAC+AGG 0.434370 7_3:-31383582 Msa1100950:CDS
TGTCTCGTCCTGTTCTTCTT+CGG 0.435826 7_3:+31383574 None:intergenic
GTACAACCCCAATAAGTTGC+AGG 0.438881 7_3:+31382906 None:intergenic
TGTGGTTTCCTAAAACTTTG+AGG 0.440466 7_3:-31382713 Msa1100950:CDS
TCATGAATCCAGAACACAAC+GGG 0.441078 7_3:-31383746 Msa1100950:intron
CCTAGACAATGCCGCCGGAT+TGG 0.441868 7_3:+31382530 None:intergenic
GAGTTATGGTTTGCACCATT+CGG 0.443392 7_3:+31382837 None:intergenic
TTTCTGCGACCGGCACCTAC+TGG 0.444047 7_3:+31383377 None:intergenic
GCTCTTTCTGGACAACCCTT+GGG 0.447364 7_3:-31382662 Msa1100950:CDS
CACCTTGTGGTGGGAAGCTA+TGG 0.449902 7_3:+31383039 None:intergenic
TTCAGTCTTGCAAGCCAATC+CGG 0.451150 7_3:-31382544 Msa1100950:CDS
TTCTATCCTGCAACTTATTG+GGG 0.466905 7_3:-31382912 Msa1100950:CDS
TTTAGTTGAAACTTTATGGC+TGG 0.467066 7_3:-31382053 Msa1100950:three_prime_UTR
CACCGGCAGTCCAATATCTC+TGG 0.470878 7_3:+31383417 None:intergenic
CTCGTTTGCATCGGATTCCA+TGG 0.476868 7_3:+31382984 None:intergenic
GCAGTTCTTGCAGAAATGAC+GGG 0.478653 7_3:+31383439 None:intergenic
GATTGTACCGTTGCATTTCA+AGG 0.479174 7_3:+31383304 None:intergenic
CAATAAGTTGCAGGATAGAA+TGG 0.479650 7_3:+31382915 None:intergenic
GGAAAATCCTGATGGACAAA+AGG 0.486001 7_3:+31382941 None:intergenic
CTTATTTATATACATCTAAG+AGG 0.488347 7_3:+31382189 None:intergenic
CCAATTTCAGAAATTCATGT+TGG 0.497810 7_3:-31385131 Msa1100950:CDS
GATGGACAAAAGGCCGGTGG+TGG 0.498700 7_3:+31382951 None:intergenic
TCATTGACTCTAATCTGGCA+TGG 0.501353 7_3:-31382094 Msa1100950:three_prime_UTR
ACTACAAACTCTCCAACCTT+AGG 0.501563 7_3:-31382813 Msa1100950:CDS
TAATGTGGTTCTTGTTCAGT+TGG 0.504875 7_3:+31382294 None:intergenic
GGCAGTTCTTGCAGAAATGA+CGG 0.505612 7_3:+31383438 None:intergenic
AAGGATAAGAATAAGAATGA+GGG 0.506790 7_3:-31382169 Msa1100950:three_prime_UTR
ATCAGTGAGCTCGTTTGCAT+CGG 0.516857 7_3:+31382975 None:intergenic
CGTGGAATGTTCCATGCACT+TGG 0.517020 7_3:+31382879 None:intergenic
GTGAGTTGGATCCAAATGTA+AGG 0.517691 7_3:+31383282 None:intergenic
AGCTTGTTCTTGAGATACAT+TGG 0.519714 7_3:+31383073 None:intergenic
TTGTCCTCGTTGTAGTAGCA+TGG 0.523986 7_3:-31383504 Msa1100950:CDS
TGCCAGAGATATTGGACTGC+CGG 0.524544 7_3:-31383419 Msa1100950:CDS
ACCTACTGGTACGTTTCTCA+TGG 0.524953 7_3:+31383391 None:intergenic
TACCGTTGCATTTCAAGGAA+GGG 0.526711 7_3:+31383309 None:intergenic
TAAGGATAAGAATAAGAATG+AGG 0.530067 7_3:-31382170 Msa1100950:three_prime_UTR
TACGTTTCTCATGGTTCCAC+CGG 0.531107 7_3:+31383400 None:intergenic
TGAATCACATAAAGGTGAGT+TGG 0.531921 7_3:+31383268 None:intergenic
GATGCCACTGAATCACATAA+AGG 0.533836 7_3:+31383260 None:intergenic
GTACCGTTGCATTTCAAGGA+AGG 0.535966 7_3:+31383308 None:intergenic
TCTTGCAGAAATGACGGGGT+TGG 0.542522 7_3:+31383444 None:intergenic
TTTGCACCATTCGGTGATGA+TGG 0.554189 7_3:+31382846 None:intergenic
GGAAAATAGCCACCTTGTGG+TGG 0.564170 7_3:+31383029 None:intergenic
CACCCTTCCTTGAAATGCAA+CGG 0.569292 7_3:-31383311 Msa1100950:CDS
ACTACAAATTAACAAGACTT+CGG 0.569954 7_3:+31382377 None:intergenic
TTGTTCTTGAGATACATTGG+TGG 0.575585 7_3:+31383076 None:intergenic
GAACTCCTTGGCATTTACCA+TGG 0.576696 7_3:-31383001 Msa1100950:CDS
CAAGAACAAGCTATGTGGAA+TGG 0.577149 7_3:-31383062 Msa1100950:CDS
AACCTTAGGTAAACATTCAA+GGG 0.580141 7_3:-31382799 Msa1100950:CDS
CTCACCTTTATGTGATTCAG+TGG 0.580504 7_3:-31383264 Msa1100950:CDS
ATTCTTCTGTTGATTGTGCA+AGG 0.584727 7_3:+31383687 None:intergenic
AATGCCTGAAAGAGTCTTCG+CGG 0.584851 7_3:+31382609 None:intergenic
AATGGCATGGAAAATCCTGA+TGG 0.590674 7_3:+31382933 None:intergenic
TATCTCAAGAACAAGCTATG+TGG 0.592377 7_3:-31383067 Msa1100950:CDS
TGTTACAGTATCCACCGAAA+GGG 0.593158 7_3:-31383624 Msa1100950:CDS
CAAGTGCATGGAACATTCCA+CGG 0.594597 7_3:-31382878 Msa1100950:CDS
CCTCATACCAGTGAAGAACA+AGG 0.595660 7_3:-31383155 Msa1100950:CDS
GGCCATAGCTTCCCACCACA+AGG 0.598341 7_3:-31383041 Msa1100950:CDS
CATTATGAAAGAAAGAAGCC+AGG 0.602999 7_3:+31382130 None:intergenic
AATCCTGATGGACAAAAGGC+CGG 0.603585 7_3:+31382945 None:intergenic
GGATCAATCAAATAAATCGT+CGG 0.604223 7_3:-31383129 Msa1100950:CDS
ACCTTCCGTCGACTTTGTGG+AGG 0.610776 7_3:+31383103 None:intergenic
GGATTCCATGGTAAATGCCA+AGG 0.611774 7_3:+31382996 None:intergenic
CTGTTACAGTATCCACCGAA+AGG 0.612746 7_3:-31383625 Msa1100950:CDS
CTAAAATCAAGCGAAGGAGA+TGG 0.613491 7_3:-31382765 Msa1100950:CDS
TGTAGCAACCTCCCTTTCGG+TGG 0.614289 7_3:+31383613 None:intergenic
GAAAATAGCCACCTTGTGGT+GGG 0.619044 7_3:+31383030 None:intergenic
GATGATGGTTGTGCTTGCCG+TGG 0.621977 7_3:+31382861 None:intergenic
ATGCTACTACAACGAGGACA+AGG 0.624918 7_3:+31383506 None:intergenic
AGTTGCAGGATAGAATGGCA+TGG 0.625575 7_3:+31382920 None:intergenic
TCTCGTGAAAAGGTTGAACA+CGG 0.626649 7_3:+31382429 None:intergenic
GAGCTCACTGATTCCACCAC+CGG 0.627819 7_3:-31382964 Msa1100950:CDS
CAGTTCTTGCAGAAATGACG+GGG 0.628674 7_3:+31383440 None:intergenic
GTTGTACTATGCCAAGTGCA+TGG 0.629999 7_3:-31382890 Msa1100950:CDS
ACAAGAATGCTCCATTAATG+TGG 0.631067 7_3:+31382279 None:intergenic
TAAGCGAAGAAAAGAGCTTG+TGG 0.632631 7_3:-31382731 Msa1100950:CDS
TACCAGTGAAGAACAAGGGG+AGG 0.634191 7_3:-31383150 Msa1100950:CDS
TACAGTATCCACCGAAAGGG+AGG 0.634842 7_3:-31383621 Msa1100950:CDS
ACCTCCACAAAGTCGACGGA+AGG 0.636006 7_3:-31383104 Msa1100950:CDS
ACAAGAACATGAGATTGAGA+AGG 0.637128 7_3:-31385021 Msa1100950:intron
AGGATAAGAATAAGAATGAG+GGG 0.637694 7_3:-31382168 Msa1100950:three_prime_UTR
AACATGCTAAAATCAAGCGA+AGG 0.639475 7_3:-31382771 Msa1100950:CDS
CTCATACCAGTGAAGAACAA+GGG 0.644364 7_3:-31383154 Msa1100950:CDS
TCATACCAGTGAAGAACAAG+GGG 0.646136 7_3:-31383153 Msa1100950:CDS
AGAAACGTACCAGTAGGTGC+CGG 0.653444 7_3:-31383386 Msa1100950:CDS
TTTGAGGATCGATGACTCAG+AGG 0.659653 7_3:-31382697 Msa1100950:CDS
CAGAGATATTGGACTGCCGG+TGG 0.661022 7_3:-31383416 Msa1100950:CDS
CTTAGGTAAACATTCAAGGG+AGG 0.664142 7_3:-31382796 Msa1100950:CDS
GGTTACCTCCACAAAGTCGA+CGG 0.667234 7_3:-31383108 Msa1100950:CDS
TGAGGAAAATAGCCACCTTG+TGG 0.671039 7_3:+31383026 None:intergenic
GCACAACCATCATCACCGAA+TGG 0.672816 7_3:-31382852 Msa1100950:CDS
ACCATGAGAAACGTACCAGT+AGG 0.705884 7_3:-31383392 Msa1100950:CDS
CCTGATGGACAAAAGGCCGG+TGG 0.706000 7_3:+31382948 None:intergenic
GGACGAGACAAGTAACACAC+AGG 0.712817 7_3:-31383561 Msa1100950:CDS
GCCTGAAAGAGTCTTCGCGG+AGG 0.713974 7_3:+31382612 None:intergenic
CATAGCTTCCCACCACAAGG+TGG 0.714183 7_3:-31383038 Msa1100950:CDS
AGTCTTGCAAGCCAATCCGG+CGG 0.717524 7_3:-31382541 Msa1100950:CDS
AAATGCCAAGGAGTTCCATG+AGG 0.739950 7_3:+31383008 None:intergenic
TTCATGAATCCAGAACACAA+CGG 0.740548 7_3:-31383747 Msa1100950:intron
GTGTCCATGCTACTACAACG+AGG 0.808267 7_3:+31383500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGAGAATTTTGATTTTT+TGG - chr7_3:31382308-31382327 Msa1100950:three_prime_UTR 15.0%
!!! AATAATTTTTTCACTTTTCA+AGG - chr7_3:31382509-31382528 Msa1100950:CDS 15.0%
!! TTAAACTACATAGTATAATT+TGG + chr7_3:31382603-31382622 None:intergenic 15.0%
!!! TAAGTTTTTGAAGTTATATT+TGG - chr7_3:31382620-31382639 Msa1100950:CDS 15.0%
!! TTTATTTCATATACCAAATA+AGG + chr7_3:31382686-31382705 None:intergenic 15.0%
!!! TTCTTTTTATGATATTAATG+TGG - chr7_3:31383482-31383501 Msa1100950:CDS 15.0%
!!! TCATAATCACTTATATATTT+TGG - chr7_3:31384813-31384832 Msa1100950:intron 15.0%
!! ATTATTTAGTTGAAACTTTA+TGG - chr7_3:31385242-31385261 Msa1100950:five_prime_UTR 15.0%
!! AAAAAGAATGATGTTGTAAA+AGG + chr7_3:31382047-31382066 None:intergenic 20.0%
!! ATTCTTCCATTTCAAATAAA+GGG + chr7_3:31382361-31382380 None:intergenic 20.0%
!! TATTCTTCCATTTCAAATAA+AGG + chr7_3:31382362-31382381 None:intergenic 20.0%
!! TGAAATGGAAGAATATTTAA+TGG - chr7_3:31382367-31382386 Msa1100950:three_prime_UTR 20.0%
!! GAAATGGAAGAATATTTAAT+GGG - chr7_3:31382368-31382387 Msa1100950:three_prime_UTR 20.0%
!! ATTGAAAGAATTACCTTATT+TGG - chr7_3:31382670-31382689 Msa1100950:CDS 20.0%
!!! AAATCATGTTAGTTTATGTT+TGG + chr7_3:31382948-31382967 None:intergenic 20.0%
!!! CTTTTTCTTGTTTGAATTTT+GGG - chr7_3:31382980-31382999 Msa1100950:CDS 20.0%
!!! TTTGAATTTTGGGTTTTATA+TGG - chr7_3:31382990-31383009 Msa1100950:CDS 20.0%
!! TTTATTGCGAAAAAAACATT+TGG + chr7_3:31383350-31383369 None:intergenic 20.0%
!! CATGAATAAATACTAATCTT+TGG - chr7_3:31383527-31383546 Msa1100950:CDS 20.0%
!!! TATTTTGGTAATTGTGTTTT+TGG - chr7_3:31384828-31384847 Msa1100950:intron 20.0%
!! TTATATATACATGAACTAAC+AGG + chr7_3:31385047-31385066 None:intergenic 20.0%
!! CTTATTTATATACATCTAAG+AGG + chr7_3:31385113-31385132 None:intergenic 20.0%
!! CTCTTAGATGTATATAAATA+AGG - chr7_3:31385111-31385130 Msa1100950:CDS 20.0%
!!! GTTTTTAGCAACAAAAATGT+TGG - chr7_3:31382104-31382123 Msa1100950:three_prime_UTR 25.0%
!! TTATGACCCTTTATTTGAAA+TGG - chr7_3:31382352-31382371 Msa1100950:three_prime_UTR 25.0%
!!! AAAATTCATTTGACTTGCTT+TGG - chr7_3:31382416-31382435 Msa1100950:three_prime_UTR 25.0%
!! ATTTTGGATTGTTTTCAATC+TGG - chr7_3:31382546-31382565 Msa1100950:CDS 25.0%
!! TTTTGGATTGTTTTCAATCT+GGG - chr7_3:31382547-31382566 Msa1100950:CDS 25.0%
!! TTTGAAGTTATATTTGGCTT+TGG - chr7_3:31382626-31382645 Msa1100950:CDS 25.0%
!!! GGTGAAGTTTTATTTATTCA+TGG - chr7_3:31382647-31382666 Msa1100950:CDS 25.0%
!! TATTGAAAGGAAAGTGATTT+TGG - chr7_3:31382821-31382840 Msa1100950:CDS 25.0%
!! TTAGTTTATGTTTGGAATCA+CGG + chr7_3:31382940-31382959 None:intergenic 25.0%
!!! GCTTTTTCTTGTTTGAATTT+TGG - chr7_3:31382979-31382998 Msa1100950:CDS 25.0%
!!! TTTAAAATTCGACAGTTTTC+TGG + chr7_3:31383028-31383047 None:intergenic 25.0%
!!! AAACTGTCGAATTTTAAAAC+TGG - chr7_3:31383030-31383049 Msa1100950:CDS 25.0%
! ACTACAAATTAACAAGACTT+CGG + chr7_3:31384925-31384944 None:intergenic 25.0%
! TAAGGATAAGAATAAGAATG+AGG - chr7_3:31385129-31385148 Msa1100950:CDS 25.0%
! AAGGATAAGAATAAGAATGA+GGG - chr7_3:31385130-31385149 Msa1100950:CDS 25.0%
!! CCAACATGAATTTCTGAAAT+TGG + chr7_3:31382171-31382190 None:intergenic 30.0%
CCAATTTCAGAAATTCATGT+TGG - chr7_3:31382168-31382187 Msa1100950:three_prime_UTR 30.0%
!! GGAGTTTCAATGTTTGATTT+TGG - chr7_3:31382530-31382549 Msa1100950:CDS 30.0%
AGAATTAGGAAGCTATTGAA+AGG - chr7_3:31382808-31382827 Msa1100950:CDS 30.0%
GTTCAACAAAATCACAATCA+CGG - chr7_3:31382889-31382908 Msa1100950:CDS 30.0%
CACAAACTGATACAAAAACA+AGG - chr7_3:31383218-31383237 Msa1100950:CDS 30.0%
TCGAATAAAAAGAACGAAGA+TGG - chr7_3:31383586-31383605 Msa1100950:CDS 30.0%
GTGCAAAATTACACAAGAAA+TGG - chr7_3:31384087-31384106 Msa1100950:intron 30.0%
GGATCAATCAAATAAATCGT+CGG - chr7_3:31384170-31384189 Msa1100950:intron 30.0%
ATTCTATCCTGCAACTTATT+GGG - chr7_3:31384386-31384405 Msa1100950:intron 30.0%
AACCTTAGGTAAACATTCAA+GGG - chr7_3:31384500-31384519 Msa1100950:intron 30.0%
!!! GTTGTTGTTTTTAATCCCAA+GGG + chr7_3:31384655-31384674 None:intergenic 30.0%
! TTTGTGATTTTCTCGTGAAA+AGG + chr7_3:31384883-31384902 None:intergenic 30.0%
TATATACATCTAAGAGGTCT+TGG + chr7_3:31385107-31385126 None:intergenic 30.0%
AGGATAAGAATAAGAATGAG+GGG - chr7_3:31385131-31385150 Msa1100950:CDS 30.0%
!!! GTTTTTCATTGACTCTAATC+TGG - chr7_3:31385200-31385219 Msa1100950:exon 30.0%
TTTAGTTGAAACTTTATGGC+TGG - chr7_3:31385246-31385265 Msa1100950:five_prime_UTR 30.0%
ACAAGAACATGAGATTGAGA+AGG - chr7_3:31382278-31382297 Msa1100950:three_prime_UTR 35.0%
ACCTTGTTGATGCTAGAATT+AGG - chr7_3:31382794-31382813 Msa1100950:CDS 35.0%
TCCTAATTCTAGCATCAACA+AGG + chr7_3:31382798-31382817 None:intergenic 35.0%
! ATTCGACAGTTTTCTGGATT+TGG + chr7_3:31383022-31383041 None:intergenic 35.0%
! TCAGTTTTACTCAATTCCCT+TGG - chr7_3:31383106-31383125 Msa1100950:CDS 35.0%
AATTCCCTTGGTTTAATGTC+TGG - chr7_3:31383118-31383137 Msa1100950:CDS 35.0%
AACACCAGACATTAAACCAA+GGG + chr7_3:31383125-31383144 None:intergenic 35.0%
AAACACCAGACATTAAACCA+AGG + chr7_3:31383126-31383145 None:intergenic 35.0%
TTAATGTCTGGTGTTTGTGT+CGG - chr7_3:31383130-31383149 Msa1100950:CDS 35.0%
TCGAATGATAGGATCCAATT+TGG + chr7_3:31383179-31383198 None:intergenic 35.0%
GTTAGGAAACATCGAATGAT+AGG + chr7_3:31383190-31383209 None:intergenic 35.0%
CAGTTTGTGTAGAATCTGTT+AGG + chr7_3:31383207-31383226 None:intergenic 35.0%
CATTAGCAGTAGACTCAATA+TGG + chr7_3:31383260-31383279 None:intergenic 35.0%
TTCATGAATCCAGAACACAA+CGG - chr7_3:31383552-31383571 Msa1100950:CDS 35.0%
! ATTCTTCTGTTGATTGTGCA+AGG + chr7_3:31383615-31383634 None:intergenic 35.0%
! CTATTTTGTCCGGTTTTTTG+AGG + chr7_3:31383771-31383790 None:intergenic 35.0%
AACGGTACAATCCTTACATT+TGG - chr7_3:31384006-31384025 Msa1100950:intron 35.0%
TGAATCACATAAAGGTGAGT+TGG + chr7_3:31384034-31384053 None:intergenic 35.0%
TTGTTCTTGAGATACATTGG+TGG + chr7_3:31384226-31384245 None:intergenic 35.0%
! AGCTTGTTCTTGAGATACAT+TGG + chr7_3:31384229-31384248 None:intergenic 35.0%
TATCTCAAGAACAAGCTATG+TGG - chr7_3:31384232-31384251 Msa1100950:intron 35.0%
CAATAAGTTGCAGGATAGAA+TGG + chr7_3:31384387-31384406 None:intergenic 35.0%
CATTCTATCCTGCAACTTAT+TGG - chr7_3:31384385-31384404 Msa1100950:intron 35.0%
TTCTATCCTGCAACTTATTG+GGG - chr7_3:31384387-31384406 Msa1100950:intron 35.0%
GAGAGTTTGTAGTAGAGTTA+TGG + chr7_3:31384479-31384498 None:intergenic 35.0%
CTTGAATGTTTACCTAAGGT+TGG + chr7_3:31384501-31384520 None:intergenic 35.0%
CAACCTTAGGTAAACATTCA+AGG - chr7_3:31384499-31384518 Msa1100950:intron 35.0%
AACATGCTAAAATCAAGCGA+AGG - chr7_3:31384528-31384547 Msa1100950:intron 35.0%
TGTGGTTTCCTAAAACTTTG+AGG - chr7_3:31384586-31384605 Msa1100950:intron 35.0%
! TCATCGATCCTCAAAGTTTT+AGG + chr7_3:31384597-31384616 None:intergenic 35.0%
AAGCAGAAAAAAGCTCTTTC+TGG - chr7_3:31384625-31384644 Msa1100950:intron 35.0%
!!! CGTTGTTGTTTTTAATCCCA+AGG + chr7_3:31384656-31384675 None:intergenic 35.0%
! ACCAACCTTTTTCTTCTGTT+CGG + chr7_3:31384967-31384986 None:intergenic 35.0%
TAATGTGGTTCTTGTTCAGT+TGG + chr7_3:31385008-31385027 None:intergenic 35.0%
CTGAACAAGAACCACATTAA+TGG - chr7_3:31385009-31385028 Msa1100950:intron 35.0%
ACAAGAATGCTCCATTAATG+TGG + chr7_3:31385023-31385042 None:intergenic 35.0%
CATTATGAAAGAAAGAAGCC+AGG + chr7_3:31385172-31385191 None:intergenic 35.0%
CTAATCTGGCATGGTTTATT+AGG - chr7_3:31385214-31385233 Msa1100950:five_prime_UTR 35.0%
GAACTGAGAGTTACAAGAGT+TGG + chr7_3:31382764-31382783 None:intergenic 40.0%
ACTCTTGTAACTCTCAGTTC+AGG - chr7_3:31382764-31382783 Msa1100950:CDS 40.0%
TAGTAAAAGCCACACTTTCG+AGG - chr7_3:31382867-31382886 Msa1100950:CDS 40.0%
TTTGTTGAACCTCGAAAGTG+TGG + chr7_3:31382879-31382898 None:intergenic 40.0%
CGGTGAATTTCACGAAATCA+TGG + chr7_3:31382920-31382939 None:intergenic 40.0%
GGAATCTGCTCAAAGATGTT+AGG + chr7_3:31383056-31383075 None:intergenic 40.0%
GGGGATTAACTCATCCAAAT+TGG - chr7_3:31383162-31383181 Msa1100950:CDS 40.0%
TCATGAATCCAGAACACAAC+GGG - chr7_3:31383553-31383572 Msa1100950:CDS 40.0%
!! TCAGTTCTAGAAGTTGCATC+TGG + chr7_3:31383646-31383665 None:intergenic 40.0%
TGTTACAGTATCCACCGAAA+GGG - chr7_3:31383675-31383694 Msa1100950:CDS 40.0%
TTCAAAGACCGAAGAAGAAC+AGG - chr7_3:31383717-31383736 Msa1100950:CDS 40.0%
GGATAAGCACCTCAAAAAAC+CGG - chr7_3:31383759-31383778 Msa1100950:intron 40.0%
! GGACAAGGAACTATTTTGTC+CGG + chr7_3:31383781-31383800 None:intergenic 40.0%
AAGCGACACTTCAGAATTCT+CGG - chr7_3:31383962-31383981 Msa1100950:intron 40.0%
TACCGTTGCATTTCAAGGAA+GGG + chr7_3:31383993-31384012 None:intergenic 40.0%
GATTGTACCGTTGCATTTCA+AGG + chr7_3:31383998-31384017 None:intergenic 40.0%
! GTGAGTTGGATCCAAATGTA+AGG + chr7_3:31384020-31384039 None:intergenic 40.0%
CTCACCTTTATGTGATTCAG+TGG - chr7_3:31384035-31384054 Msa1100950:intron 40.0%
GATGCCACTGAATCACATAA+AGG + chr7_3:31384042-31384061 None:intergenic 40.0%
CTCATACCAGTGAAGAACAA+GGG - chr7_3:31384145-31384164 Msa1100950:intron 40.0%
TCATACCAGTGAAGAACAAG+GGG - chr7_3:31384146-31384165 Msa1100950:intron 40.0%
CAAGAACAAGCTATGTGGAA+TGG - chr7_3:31384237-31384256 Msa1100950:intron 40.0%
! ATTTTCCTCATGGAACTCCT+TGG - chr7_3:31384286-31384305 Msa1100950:intron 40.0%
! GGAAAATCCTGATGGACAAA+AGG + chr7_3:31384361-31384380 None:intergenic 40.0%
AATGGCATGGAAAATCCTGA+TGG + chr7_3:31384369-31384388 None:intergenic 40.0%
! GAGTTATGGTTTGCACCATT+CGG + chr7_3:31384465-31384484 None:intergenic 40.0%
ACTACAAACTCTCCAACCTT+AGG - chr7_3:31384486-31384505 Msa1100950:intron 40.0%
CTCCCTTGAATGTTTACCTA+AGG + chr7_3:31384505-31384524 None:intergenic 40.0%
CTTAGGTAAACATTCAAGGG+AGG - chr7_3:31384503-31384522 Msa1100950:intron 40.0%
CTAAAATCAAGCGAAGGAGA+TGG - chr7_3:31384534-31384553 Msa1100950:intron 40.0%
TAAGCGAAGAAAAGAGCTTG+TGG - chr7_3:31384568-31384587 Msa1100950:intron 40.0%
! TTTTCTCGTCGCACTTTGAA+GGG + chr7_3:31384716-31384735 None:intergenic 40.0%
! TTTTTCTCGTCGCACTTTGA+AGG + chr7_3:31384717-31384736 None:intergenic 40.0%
TTGGTTGCGTCAAACTGATT+TGG - chr7_3:31384847-31384866 Msa1100950:intron 40.0%
TCTCGTGAAAAGGTTGAACA+CGG + chr7_3:31384873-31384892 None:intergenic 40.0%
! ACCTTTTTCTTCTGTTCGGT+TGG + chr7_3:31384963-31384982 None:intergenic 40.0%
ACCGAACAGAAGAAAAAGGT+TGG - chr7_3:31384963-31384982 Msa1100950:intron 40.0%
GGGTTCAATTTGTACTTTCC+TGG - chr7_3:31385151-31385170 Msa1100950:CDS 40.0%
!! TCATTGACTCTAATCTGGCA+TGG - chr7_3:31385205-31385224 Msa1100950:five_prime_UTR 40.0%
GACTCTGCGATCAAACTGTT+TGG - chr7_3:31382135-31382154 Msa1100950:three_prime_UTR 45.0%
AAGTGCAGAGCATATGATGC+AGG + chr7_3:31383077-31383096 None:intergenic 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - chr7_3:31383141-31383160 Msa1100950:CDS 45.0%
! GTTTGTGTCGGTGCTTCATA+GGG - chr7_3:31383142-31383161 Msa1100950:CDS 45.0%
! TTTGTGTCGGTGCTTCATAG+GGG - chr7_3:31383143-31383162 Msa1100950:CDS 45.0%
GTCTACTGCTAATGCTCTCA+TGG - chr7_3:31383266-31383285 Msa1100950:CDS 45.0%
! GTTTTTCTCCCGTTGTGTTC+TGG + chr7_3:31383564-31383583 None:intergenic 45.0%
CTGTTACAGTATCCACCGAA+AGG - chr7_3:31383674-31383693 Msa1100950:CDS 45.0%
CAATGTAGCAACCTCCCTTT+CGG + chr7_3:31383692-31383711 None:intergenic 45.0%
TGTCTCGTCCTGTTCTTCTT+CGG + chr7_3:31383728-31383747 None:intergenic 45.0%
ATGCTACTACAACGAGGACA+AGG + chr7_3:31383796-31383815 None:intergenic 45.0%
TTGTCCTCGTTGTAGTAGCA+TGG - chr7_3:31383795-31383814 Msa1100950:intron 45.0%
CAGTTCTTGCAGAAATGACG+GGG + chr7_3:31383862-31383881 None:intergenic 45.0%
GCAGTTCTTGCAGAAATGAC+GGG + chr7_3:31383863-31383882 None:intergenic 45.0%
GGCAGTTCTTGCAGAAATGA+CGG + chr7_3:31383864-31383883 None:intergenic 45.0%
GCAAGAACTGCCAGAGATAT+TGG - chr7_3:31383872-31383891 Msa1100950:intron 45.0%
TACGTTTCTCATGGTTCCAC+CGG + chr7_3:31383902-31383921 None:intergenic 45.0%
ACCATGAGAAACGTACCAGT+AGG - chr7_3:31383907-31383926 Msa1100950:intron 45.0%
ACCTACTGGTACGTTTCTCA+TGG + chr7_3:31383911-31383930 None:intergenic 45.0%
!!! GCTCTTGTTTTTTCTGCGAC+CGG + chr7_3:31383935-31383954 None:intergenic 45.0%
CACCCTTCCTTGAAATGCAA+CGG - chr7_3:31383988-31384007 Msa1100950:intron 45.0%
GTACCGTTGCATTTCAAGGA+AGG + chr7_3:31383994-31384013 None:intergenic 45.0%
CCTTGTTCTTCACTGGTATG+AGG + chr7_3:31384147-31384166 None:intergenic 45.0%
CCTCATACCAGTGAAGAACA+AGG - chr7_3:31384144-31384163 Msa1100950:intron 45.0%
GAAAATAGCCACCTTGTGGT+GGG + chr7_3:31384272-31384291 None:intergenic 45.0%
TGAGGAAAATAGCCACCTTG+TGG + chr7_3:31384276-31384295 None:intergenic 45.0%
!! CAAGGTGGCTATTTTCCTCA+TGG - chr7_3:31384276-31384295 Msa1100950:intron 45.0%
AAATGCCAAGGAGTTCCATG+AGG + chr7_3:31384294-31384313 None:intergenic 45.0%
GAACTCCTTGGCATTTACCA+TGG - chr7_3:31384298-31384317 Msa1100950:intron 45.0%
GGATTCCATGGTAAATGCCA+AGG + chr7_3:31384306-31384325 None:intergenic 45.0%
ATCAGTGAGCTCGTTTGCAT+CGG + chr7_3:31384327-31384346 None:intergenic 45.0%
! AATCCTGATGGACAAAAGGC+CGG + chr7_3:31384357-31384376 None:intergenic 45.0%
AGTTGCAGGATAGAATGGCA+TGG + chr7_3:31384382-31384401 None:intergenic 45.0%
GTACAACCCCAATAAGTTGC+AGG + chr7_3:31384396-31384415 None:intergenic 45.0%
GTTGTACTATGCCAAGTGCA+TGG - chr7_3:31384409-31384428 Msa1100950:intron 45.0%
CAAGTGCATGGAACATTCCA+CGG - chr7_3:31384421-31384440 Msa1100950:intron 45.0%
! TTTGCACCATTCGGTGATGA+TGG + chr7_3:31384456-31384475 None:intergenic 45.0%
TTTGAGGATCGATGACTCAG+AGG - chr7_3:31384602-31384621 Msa1100950:intron 45.0%
AATGCCTGAAAGAGTCTTCG+CGG + chr7_3:31384693-31384712 None:intergenic 45.0%
GTGCGACGAGAAAAATCACT+CGG - chr7_3:31384722-31384741 Msa1100950:intron 45.0%
TTCAGTCTTGCAAGCCAATC+CGG - chr7_3:31384755-31384774 Msa1100950:intron 45.0%
GCCAACCGAACAGAAGAAAA+AGG - chr7_3:31384959-31384978 Msa1100950:intron 45.0%
TACAGTATCCACCGAAAGGG+AGG - chr7_3:31383678-31383697 Msa1100950:CDS 50.0%
GGACGAGACAAGTAACACAC+AGG - chr7_3:31383738-31383757 Msa1100950:intron 50.0%
GTGTCCATGCTACTACAACG+AGG + chr7_3:31383802-31383821 None:intergenic 50.0%
! TCTTGCAGAAATGACGGGGT+TGG + chr7_3:31383858-31383877 None:intergenic 50.0%
TGCCAGAGATATTGGACTGC+CGG - chr7_3:31383880-31383899 Msa1100950:intron 50.0%
AGAAACGTACCAGTAGGTGC+CGG - chr7_3:31383913-31383932 Msa1100950:intron 50.0%
TACCAGTGAAGAACAAGGGG+AGG - chr7_3:31384149-31384168 Msa1100950:intron 50.0%
ATCCTCCCCTTGTTCTTCAC+TGG + chr7_3:31384154-31384173 None:intergenic 50.0%
GGTTACCTCCACAAAGTCGA+CGG - chr7_3:31384191-31384210 Msa1100950:intron 50.0%
GGAAAATAGCCACCTTGTGG+TGG + chr7_3:31384273-31384292 None:intergenic 50.0%
CTCGTTTGCATCGGATTCCA+TGG + chr7_3:31384318-31384337 None:intergenic 50.0%
CGTGGAATGTTCCATGCACT+TGG + chr7_3:31384423-31384442 None:intergenic 50.0%
GCACAACCATCATCACCGAA+TGG - chr7_3:31384447-31384466 Msa1100950:intron 50.0%
AGCTCTTTCTGGACAACCCT+TGG - chr7_3:31384636-31384655 Msa1100950:intron 50.0%
GCTCTTTCTGGACAACCCTT+GGG - chr7_3:31384637-31384656 Msa1100950:intron 50.0%
TGTAGCAACCTCCCTTTCGG+TGG + chr7_3:31383689-31383708 None:intergenic 55.0%
CACCGGCAGTCCAATATCTC+TGG + chr7_3:31383885-31383904 None:intergenic 55.0%
CAGAGATATTGGACTGCCGG+TGG - chr7_3:31383883-31383902 Msa1100950:intron 55.0%
ACCTCCACAAAGTCGACGGA+AGG - chr7_3:31384195-31384214 Msa1100950:intron 55.0%
!! ACCTTCCGTCGACTTTGTGG+AGG + chr7_3:31384199-31384218 None:intergenic 55.0%
!! TGCACCTTCCGTCGACTTTG+TGG + chr7_3:31384202-31384221 None:intergenic 55.0%
! CACCTTGTGGTGGGAAGCTA+TGG + chr7_3:31384263-31384282 None:intergenic 55.0%
CATAGCTTCCCACCACAAGG+TGG - chr7_3:31384261-31384280 Msa1100950:intron 55.0%
!! GAGCTCACTGATTCCACCAC+CGG - chr7_3:31384335-31384354 Msa1100950:intron 55.0%
! GATGATGGTTGTGCTTGCCG+TGG + chr7_3:31384441-31384460 None:intergenic 55.0%
TCCTCCGCGAAGACTCTTTC+AGG - chr7_3:31384686-31384705 Msa1100950:intron 55.0%
AGTCTTGCAAGCCAATCCGG+CGG - chr7_3:31384758-31384777 Msa1100950:intron 55.0%
TTTCTGCGACCGGCACCTAC+TGG + chr7_3:31383925-31383944 None:intergenic 60.0%
GGCCATAGCTTCCCACCACA+AGG - chr7_3:31384258-31384277 Msa1100950:intron 60.0%
GATGGACAAAAGGCCGGTGG+TGG + chr7_3:31384351-31384370 None:intergenic 60.0%
! CCTGATGGACAAAAGGCCGG+TGG + chr7_3:31384354-31384373 None:intergenic 60.0%
! CCACCGGCCTTTTGTCCATC+AGG - chr7_3:31384351-31384370 Msa1100950:intron 60.0%
GCCTGAAAGAGTCTTCGCGG+AGG + chr7_3:31384690-31384709 None:intergenic 60.0%
CCTAGACAATGCCGCCGGAT+TGG + chr7_3:31384772-31384791 None:intergenic 60.0%
CCAATCCGGCGGCATTGTCT+AGG - chr7_3:31384769-31384788 Msa1100950:intron 60.0%
AGCGACCTAGACAATGCCGC+CGG + chr7_3:31384777-31384796 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31382020 31385301 31382020 ID=Msa1100950;Name=Msa1100950
chr7_3 mRNA 31382020 31385301 31382020 ID=Msa1100950-mRNA-1;Parent=Msa1100950;Name=Msa1100950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=100|1|1|1|1|1|2|483|477
chr7_3 exon 31382020 31383756 31382020 ID=Msa1100950-mRNA-1:exon:6660;Parent=Msa1100950-mRNA-1
chr7_3 exon 31385022 31385301 31385022 ID=Msa1100950-mRNA-1:exon:6659;Parent=Msa1100950-mRNA-1
chr7_3 five_prime_UTR 31385202 31385301 31385202 ID=Msa1100950-mRNA-1:five_prime_utr;Parent=Msa1100950-mRNA-1
chr7_3 CDS 31385022 31385201 31385022 ID=Msa1100950-mRNA-1:cds;Parent=Msa1100950-mRNA-1
chr7_3 CDS 31382503 31383756 31382503 ID=Msa1100950-mRNA-1:cds;Parent=Msa1100950-mRNA-1
chr7_3 three_prime_UTR 31382020 31382502 31382020 ID=Msa1100950-mRNA-1:three_prime_utr;Parent=Msa1100950-mRNA-1
Gene Sequence

>Msa1100950

ATGTTGGAGACAAAAGACTCTGCGATCAAACTGTTTGGAAAAACAATTCCAATTTCAGAAATTCATGTTGGAAAAACAATTTCAGAGAGTATTGATGATCATCATCATGATTTTTCTACAAACTCTTCAAATGAGTCTCATAATAATAAAGATGCTTCACAAGAACATGAGATTGAGAAGAACACAACGGGAGAAAAACTGTCGAATAAAAAGAACGAAGATGGATTCCTTGCACAATCAACAGAAGAATTCACTAATCCAGATGCAACTTCTAGAACTGATGAAGAATCTGTTACAGTATCCACCGAAAGGGAGGTTGCTACATTGAAAACTTCAAAGACCGAAGAAGAACAGGACGAGACAAGTAACACACAGGATAAGCACCTCAAAAAACCGGACAAAATAGTTCCTTGTCCTCGTTGTAGTAGCATGGACACGAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGAACTGCCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCAGTAGGTGCCGGTCGCAGAAAAAACAAGAGCTCTTCAGAAGCGACACTTCAGAATTCTCGGATACACCCTTCCTTGAAATGCAACGGTACAATCCTTACATTTGGATCCAACTCACCTTTATGTGATTCAGTGGCATCTGTTTTGAAACTTGCTGATAAAACAGTGCAAAATTACACAAGAAATGGATATCATAAACATGAAGAACTAAGAATTTGTGTTCCTCATACCAGTGAAGAACAAGGGGAGGATCAATCAAATAAATCGTCGGTTACCTCCACAAAGTCGACGGAAGGTGCAACCACCAATGTATCTCAAGAACAAGCTATGTGGAATGGCCATAGCTTCCCACCACAAGGTGGCTATTTTCCTCATGGAACTCCTTGGCATTTACCATGGAATCCGATGCAAACGAGCTCACTGATTCCACCACCGGCCTTTTGTCCATCAGGATTTTCCATGCCATTCTATCCTGCAACTTATTGGGGTTGTACTATGCCAAGTGCATGGAACATTCCACGGCAAGCACAACCATCATCACCGAATGGTGCAAACCATAACTCTACTACAAACTCTCCAACCTTAGGTAAACATTCAAGGGAGGAAAACATGCTAAAATCAAGCGAAGGAGATGGTAAGAAAGAAATAAGCGAAGAAAAGAGCTTGTGGTTTCCTAAAACTTTGAGGATCGATGACTCAGAGGAAGCAGAAAAAAGCTCTTTCTGGACAACCCTTGGGATTAAAAACAACAACGCTGACTCAGTTCCTCCGCGAAGACTCTTTCAGGCATTCCCTTCAAAGTGCGACGAGAAAAATCACTCGGTACAAGTGTCTTCAGTCTTGCAAGCCAATCCGGCGGCATTGTCTAGGTCGCTTCACTTTCACGAGACTTCATAA
Protein sequence

>Msa1100950

MLETKDSAIKLFGKTIPISEIHVGKTISESIDDHHHDFSTNSSNESHNNKDASQEHEIEKNTTGEKLSNKKNEDGFLAQSTEEFTNPDATSRTDEESVTVSTEREVATLKTSKTEEEQDETSNTQDKHLKKPDKIVPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSEATLQNSRIHPSLKCNGTILTFGSNSPLCDSVASVLKLADKTVQNYTRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNGHSFPPQGGYFPHGTPWHLPWNPMQTSSLIPPPAFCPSGFSMPFYPATYWGCTMPSAWNIPRQAQPSSPNGANHNSTTNSPTLGKHSREENMLKSSEGDGKKEISEEKSLWFPKTLRIDDSEEAEKSSFWTTLGIKNNNADSVPPRRLFQAFPSKCDEKNHSVQVSSVLQANPAALSRSLHFHETS*