AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1364360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364360 MtrunA17_Chr7g0217581 89.117 487 42 3 1 477 98 583 0.0 870
Msa1364360 MtrunA17_Chr6g0453321 56.313 499 192 10 1 477 1 495 4.69e-170 488
Msa1364360 MtrunA17_Chr4g0042481 42.857 497 228 12 1 475 1 463 9.60e-112 338
Msa1364360 MtrunA17_Chr3g0092111 39.847 522 212 19 1 477 1 465 3.18e-89 280
Msa1364360 MtrunA17_Chr5g0417601 37.654 486 181 15 4 475 2 379 8.51e-70 227
Msa1364360 MtrunA17_Chr8g0355261 34.888 493 239 21 3 476 9 438 1.50e-66 220
Msa1364360 MtrunA17_Chr5g0417561 35.579 475 188 18 4 475 2 361 8.76e-66 216
Msa1364360 MtrunA17_Chr5g0417551 35.041 488 181 20 4 475 2 369 5.31e-62 206
Msa1364360 MtrunA17_Chr7g0254161 34.651 430 195 14 78 476 49 423 2.84e-50 177
Msa1364360 MtrunA17_Chr5g0417571 41.434 251 119 7 6 238 4 244 2.72e-40 147
Msa1364360 MtrunA17_Chr6g0460731 37.282 287 97 10 2 253 7 245 7.62e-40 147
Msa1364360 MtrunA17_Chr6g0460721 64.211 95 34 0 95 189 48 142 3.69e-37 139
Msa1364360 MtrunA17_Chr2g0283811 83.333 60 10 0 130 189 41 100 2.58e-33 123
Msa1364360 MtrunA17_Chr3g0127201 66.667 60 20 0 133 192 24 83 8.94e-25 103
Msa1364360 MtrunA17_Chr8g0374111 68.966 58 18 0 136 193 29 86 1.60e-24 101
Msa1364360 MtrunA17_Chr8g0346551 66.102 59 20 0 131 189 19 77 3.83e-24 101
Msa1364360 MtrunA17_Chr8g0374251 75.472 53 13 0 138 190 70 122 3.99e-24 103
Msa1364360 MtrunA17_Chr2g0326001 56.098 82 28 1 108 189 20 93 4.62e-24 102
Msa1364360 MtrunA17_Chr4g0061761 71.698 53 15 0 134 186 38 90 4.70e-24 102
Msa1364360 MtrunA17_Chr1g0177251 59.211 76 30 1 131 205 6 81 5.55e-24 101
Msa1364360 MtrunA17_Chr8g0341671 73.077 52 14 0 136 187 20 71 6.78e-24 99.8
Msa1364360 MtrunA17_Chr2g0308011 75.510 49 12 0 136 184 37 85 8.76e-24 99.0
Msa1364360 MtrunA17_Chr4g0010151 61.290 62 24 0 128 189 74 135 9.87e-24 102
Msa1364360 MtrunA17_Chr4g0047001 47.222 108 41 3 93 189 6 108 1.10e-23 102
Msa1364360 MtrunA17_Chr2g0328021 66.667 57 19 0 138 194 64 120 1.73e-23 100
Msa1364360 MtrunA17_Chr7g0223311 41.176 119 68 2 86 203 28 145 1.78e-23 101
Msa1364360 MtrunA17_Chr8g0367161 52.000 75 36 0 115 189 11 85 3.09e-23 100
Msa1364360 MtrunA17_Chr4g0030051 66.154 65 21 1 125 188 29 93 4.09e-23 99.0
Msa1364360 MtrunA17_Chr3g0126201 68.421 57 17 1 134 189 48 104 7.25e-23 99.4
Msa1364360 MtrunA17_Chr1g0188851 67.925 53 17 0 136 188 43 95 8.59e-23 98.2
Msa1364360 MtrunA17_Chr4g0031411 63.333 60 22 0 129 188 68 127 1.22e-22 98.6
Msa1364360 MtrunA17_Chr2g0282051 74.074 54 13 1 136 189 46 98 5.81e-22 95.5
Msa1364360 MtrunA17_Chr5g0411951 65.455 55 19 0 132 186 39 93 7.03e-22 96.7
Msa1364360 MtrunA17_Chr2g0282441 72.000 50 14 0 138 187 27 76 1.15e-21 95.9
Msa1364360 MtrunA17_Chr2g0282511 73.469 49 13 0 136 184 45 93 1.61e-21 95.1
Msa1364360 MtrunA17_Chr4g0047761 69.231 52 16 0 138 189 74 125 1.68e-21 95.1
Msa1364360 MtrunA17_Chr7g0237921 69.231 52 16 0 138 189 78 129 1.75e-21 95.5
Msa1364360 MtrunA17_Chr3g0117601 59.091 66 26 1 122 186 46 111 3.50e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1364360 AT5G39660.3 41.051 514 202 19 6 477 3 457 1.06e-89 281
Msa1364360 AT5G39660.1 41.051 514 202 19 6 477 3 457 1.06e-89 281
Msa1364360 AT5G39660.2 41.051 514 202 19 6 477 3 457 1.06e-89 281
Msa1364360 AT3G47500.1 41.093 494 223 23 1 475 2 446 1.56e-81 260
Msa1364360 AT5G62430.1 38.095 378 122 16 108 475 21 296 3.09e-55 186
Msa1364360 AT1G69570.1 33.065 496 212 20 1 476 1 396 2.43e-50 176
Msa1364360 AT1G26790.1 31.263 499 186 24 1 476 7 371 2.00e-38 144
Msa1364360 AT1G29160.1 85.000 60 9 0 130 189 56 115 5.66e-35 129
Msa1364360 AT2G34140.1 81.667 60 11 0 130 189 52 111 4.43e-33 123
Msa1364360 AT5G60200.1 58.333 72 30 0 132 203 51 122 1.97e-25 105
Msa1364360 AT3G45610.1 45.263 95 52 0 101 195 5 99 4.17e-25 103
Msa1364360 AT5G60850.1 73.214 56 15 0 136 191 51 106 5.75e-25 105
Msa1364360 AT1G51700.1 68.421 57 18 0 136 192 33 89 1.89e-24 100
Msa1364360 AT3G61850.2 60.870 69 27 0 124 192 50 118 3.02e-24 102
Msa1364360 AT3G61850.3 60.870 69 27 0 124 192 50 118 3.02e-24 102
Msa1364360 AT3G61850.1 60.870 69 27 0 124 192 62 130 3.62e-24 102
Msa1364360 AT3G61850.5 60.870 69 27 0 124 192 50 118 5.11e-24 102
Msa1364360 AT3G61850.4 60.870 69 27 0 124 192 62 130 5.54e-24 102
Msa1364360 AT3G50410.1 68.966 58 18 0 136 193 30 87 7.23e-24 100
Msa1364360 AT3G55370.1 65.000 60 21 0 132 191 72 131 1.31e-23 101
Msa1364360 AT3G21270.1 76.471 51 12 0 138 188 31 81 1.32e-23 98.6
Msa1364360 AT3G55370.2 65.000 60 21 0 132 191 72 131 1.36e-23 102
Msa1364360 AT4G24060.1 68.421 57 18 0 133 189 50 106 1.43e-23 102
Msa1364360 AT3G55370.3 65.000 60 21 0 132 191 117 176 1.59e-23 102
Msa1364360 AT1G07640.1 68.333 60 18 1 138 196 23 82 1.75e-23 100
Msa1364360 AT2G28510.1 67.797 59 19 0 138 196 50 108 1.78e-23 100
Msa1364360 AT1G07640.2 68.333 60 18 1 138 196 79 138 2.75e-23 100
Msa1364360 AT1G07640.3 68.333 60 18 1 138 196 87 146 3.54e-23 100
Msa1364360 AT4G38000.1 55.844 77 29 2 135 210 40 112 4.52e-23 98.6
Msa1364360 AT2G28810.2 62.295 61 23 0 127 187 68 128 5.41e-23 99.8
Msa1364360 AT2G37590.1 56.061 66 29 0 124 189 77 142 6.68e-23 99.8
Msa1364360 AT5G66940.1 35.393 178 90 6 136 290 32 207 7.02e-23 97.4
Msa1364360 AT2G28810.1 62.295 61 23 0 127 187 85 145 8.11e-23 99.8
Msa1364360 AT1G28310.1 72.222 54 15 0 136 189 27 80 1.07e-22 99.0
Msa1364360 AT1G28310.2 72.222 54 15 0 136 189 51 104 1.75e-22 98.6
Msa1364360 AT5G65590.1 67.857 56 18 0 136 191 41 96 2.21e-22 97.8
Msa1364360 AT3G52440.2 43.299 97 49 2 110 200 12 108 2.23e-22 97.1
Msa1364360 AT1G64620.1 67.308 52 17 0 133 184 46 97 2.81e-22 98.2
Msa1364360 AT3G52440.1 57.353 68 28 1 134 200 22 89 3.28e-22 95.9
Msa1364360 AT1G21340.1 64.286 56 20 0 138 193 40 95 4.15e-22 95.9
Msa1364360 AT1G47655.1 71.429 49 14 0 136 184 29 77 1.12e-21 93.6
Msa1364360 AT4G00940.1 64.407 59 21 0 131 189 63 121 1.21e-21 95.5
Msa1364360 AT4G00940.3 64.407 59 21 0 131 189 63 121 1.21e-21 95.5
Msa1364360 AT4G00940.2 64.407 59 21 0 131 189 63 121 1.21e-21 95.5
Msa1364360 AT5G02460.1 63.793 58 21 0 132 189 91 148 1.81e-21 96.7
Msa1364360 AT2G46590.1 42.268 97 55 1 87 183 20 115 3.41e-21 95.1
Msa1364360 AT2G46590.2 42.268 97 55 1 87 183 32 127 4.15e-21 95.1
Msa1364360 AT4G21050.1 58.209 67 28 0 123 189 11 77 5.39e-21 91.7
Msa1364360 AT5G62940.1 62.295 61 22 1 127 186 63 123 3.13e-20 92.8
Msa1364360 AT4G21040.1 62.264 53 20 0 138 190 27 79 2.44e-18 84.3
Msa1364360 AT4G21080.1 60.377 53 21 0 138 190 27 79 1.32e-17 82.8
Msa1364360 AT4G21030.1 59.091 44 18 0 138 181 23 66 1.52e-11 63.9

Find 129 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTAGTTGAAACTTTA+TGG 0.068102 tig0018118:-8488 Msa1364360:three_prime_UTR
CCAACATGAATTTCTGAAAT+TGG 0.133092 tig0018118:+11562 None:intergenic
TCATAATCACTTATATATTT+TGG 0.145452 tig0018118:-8917 Msa1364360:exon
CATTCTATCCTGCAACTTAT+TGG 0.150210 tig0018118:-9345 Msa1364360:CDS
CTAATCTGGCATGGTTTATT+AGG 0.185719 tig0018118:-8516 Msa1364360:three_prime_UTR
ATTCTATCCTGCAACTTATT+GGG 0.232977 tig0018118:-9344 Msa1364360:CDS
CTGAACAAGAACCACATTAA+TGG 0.264740 tig0018118:-8721 Msa1364360:three_prime_UTR
GGGTTCAATTTGTACTTTCC+TGG 0.266809 tig0018118:-8579 Msa1364360:three_prime_UTR
TCCTCCGCGAAGACTCTTTC+AGG 0.296594 tig0018118:-9044 Msa1364360:CDS
GCAAGAACTGCCAGAGATAT+TGG 0.302290 tig0018118:-9858 Msa1364360:CDS
CTCTTAGATGTATATAAATA+AGG 0.319140 tig0018118:-8619 Msa1364360:three_prime_UTR
GAGAGTTTGTAGTAGAGTTA+TGG 0.354581 tig0018118:+9254 None:intergenic
TTGGTTGCGTCAAACTGATT+TGG 0.359459 tig0018118:-8883 Msa1364360:three_prime_UTR
GACTCTGCGATCAAACTGTT+TGG 0.377035 tig0018118:-11595 Msa1364360:CDS
CAATGTAGCAACCTCCCTTT+CGG 0.382427 tig0018118:+10041 None:intergenic
GCCAACCGAACAGAAGAAAA+AGG 0.384313 tig0018118:-8771 Msa1364360:three_prime_UTR
AGCTCTTTCTGGACAACCCT+TGG 0.392158 tig0018118:-9094 Msa1364360:CDS
ATCCTCCCCTTGTTCTTCAC+TGG 0.395303 tig0018118:+9579 None:intergenic
GTGCAAAATTACACAAGAAA+TGG 0.400392 tig0018118:-9643 Msa1364360:CDS
TGCACCTTCCGTCGACTTTG+TGG 0.406190 tig0018118:+9531 None:intergenic
CCTTGTTCTTCACTGGTATG+AGG 0.408705 tig0018118:+9586 None:intergenic
TATATACATCTAAGAGGTCT+TGG 0.409722 tig0018118:+8626 None:intergenic
CTCCCTTGAATGTTTACCTA+AGG 0.416607 tig0018118:+9228 None:intergenic
CTTGAATGTTTACCTAAGGT+TGG 0.421534 tig0018118:+9232 None:intergenic
AACGGTACAATCCTTACATT+TGG 0.421611 tig0018118:-9724 Msa1364360:CDS
TTATATATACATGAACTAAC+AGG 0.424598 tig0018118:+8686 None:intergenic
TCAGTTCTAGAAGTTGCATC+TGG 0.425578 tig0018118:+10087 None:intergenic
CAACCTTAGGTAAACATTCA+AGG 0.427611 tig0018118:-9231 Msa1364360:CDS
AAGCGACACTTCAGAATTCT+CGG 0.433945 tig0018118:-9768 Msa1364360:CDS
TTCAAAGACCGAAGAAGAAC+AGG 0.434370 tig0018118:-10013 Msa1364360:CDS
TGTCTCGTCCTGTTCTTCTT+CGG 0.435826 tig0018118:+10005 None:intergenic
GTACAACCCCAATAAGTTGC+AGG 0.438881 tig0018118:+9337 None:intergenic
TGTGGTTTCCTAAAACTTTG+AGG 0.440466 tig0018118:-9144 Msa1364360:CDS
TCATGAATCCAGAACACAAC+GGG 0.441078 tig0018118:-10177 Msa1364360:intron
CCTAGACAATGCCGCCGGAT+TGG 0.441868 tig0018118:+8961 None:intergenic
GAGTTATGGTTTGCACCATT+CGG 0.443392 tig0018118:+9268 None:intergenic
TTTCTGCGACCGGCACCTAC+TGG 0.444047 tig0018118:+9808 None:intergenic
GCTCTTTCTGGACAACCCTT+GGG 0.447364 tig0018118:-9093 Msa1364360:CDS
CACCTTGTGGTGGGAAGCTA+TGG 0.449902 tig0018118:+9470 None:intergenic
TTCAGTCTTGCAAGCCAATC+CGG 0.451150 tig0018118:-8975 Msa1364360:CDS
TTCTATCCTGCAACTTATTG+GGG 0.466905 tig0018118:-9343 Msa1364360:CDS
TTTAGTTGAAACTTTATGGC+TGG 0.467066 tig0018118:-8484 Msa1364360:three_prime_UTR
CACCGGCAGTCCAATATCTC+TGG 0.470878 tig0018118:+9848 None:intergenic
CTCGTTTGCATCGGATTCCA+TGG 0.476868 tig0018118:+9415 None:intergenic
GCAGTTCTTGCAGAAATGAC+GGG 0.478653 tig0018118:+9870 None:intergenic
GATTGTACCGTTGCATTTCA+AGG 0.479174 tig0018118:+9735 None:intergenic
CAATAAGTTGCAGGATAGAA+TGG 0.479650 tig0018118:+9346 None:intergenic
GGAAAATCCTGATGGACAAA+AGG 0.486001 tig0018118:+9372 None:intergenic
CTTATTTATATACATCTAAG+AGG 0.488347 tig0018118:+8620 None:intergenic
CCAATTTCAGAAATTCATGT+TGG 0.497810 tig0018118:-11562 Msa1364360:CDS
GATGGACAAAAGGCCGGTGG+TGG 0.498700 tig0018118:+9382 None:intergenic
TCATTGACTCTAATCTGGCA+TGG 0.501353 tig0018118:-8525 Msa1364360:three_prime_UTR
ACTACAAACTCTCCAACCTT+AGG 0.501563 tig0018118:-9244 Msa1364360:CDS
TAATGTGGTTCTTGTTCAGT+TGG 0.504875 tig0018118:+8725 None:intergenic
GGCAGTTCTTGCAGAAATGA+CGG 0.505612 tig0018118:+9869 None:intergenic
AAGGATAAGAATAAGAATGA+GGG 0.506790 tig0018118:-8600 Msa1364360:three_prime_UTR
ATCAGTGAGCTCGTTTGCAT+CGG 0.516857 tig0018118:+9406 None:intergenic
CGTGGAATGTTCCATGCACT+TGG 0.517020 tig0018118:+9310 None:intergenic
GTGAGTTGGATCCAAATGTA+AGG 0.517691 tig0018118:+9713 None:intergenic
AGCTTGTTCTTGAGATACAT+TGG 0.519714 tig0018118:+9504 None:intergenic
TTGTCCTCGTTGTAGTAGCA+TGG 0.523986 tig0018118:-9935 Msa1364360:CDS
TGCCAGAGATATTGGACTGC+CGG 0.524544 tig0018118:-9850 Msa1364360:CDS
ACCTACTGGTACGTTTCTCA+TGG 0.524953 tig0018118:+9822 None:intergenic
TACCGTTGCATTTCAAGGAA+GGG 0.526711 tig0018118:+9740 None:intergenic
TAAGGATAAGAATAAGAATG+AGG 0.530067 tig0018118:-8601 Msa1364360:three_prime_UTR
TACGTTTCTCATGGTTCCAC+CGG 0.531107 tig0018118:+9831 None:intergenic
TGAATCACATAAAGGTGAGT+TGG 0.531921 tig0018118:+9699 None:intergenic
GATGCCACTGAATCACATAA+AGG 0.533836 tig0018118:+9691 None:intergenic
GTACCGTTGCATTTCAAGGA+AGG 0.535966 tig0018118:+9739 None:intergenic
TCTTGCAGAAATGACGGGGT+TGG 0.542522 tig0018118:+9875 None:intergenic
TTTGCACCATTCGGTGATGA+TGG 0.554189 tig0018118:+9277 None:intergenic
GGAAAATAGCCACCTTGTGG+TGG 0.564170 tig0018118:+9460 None:intergenic
CACCCTTCCTTGAAATGCAA+CGG 0.569292 tig0018118:-9742 Msa1364360:CDS
ACTACAAATTAACAAGACTT+CGG 0.569954 tig0018118:+8808 None:intergenic
TTGTTCTTGAGATACATTGG+TGG 0.575585 tig0018118:+9507 None:intergenic
GAACTCCTTGGCATTTACCA+TGG 0.576696 tig0018118:-9432 Msa1364360:CDS
CAAGAACAAGCTATGTGGAA+TGG 0.577149 tig0018118:-9493 Msa1364360:CDS
AACCTTAGGTAAACATTCAA+GGG 0.580141 tig0018118:-9230 Msa1364360:CDS
CTCACCTTTATGTGATTCAG+TGG 0.580504 tig0018118:-9695 Msa1364360:CDS
ATTCTTCTGTTGATTGTGCA+AGG 0.584727 tig0018118:+10118 None:intergenic
AATGCCTGAAAGAGTCTTCG+CGG 0.584851 tig0018118:+9040 None:intergenic
AATGGCATGGAAAATCCTGA+TGG 0.590674 tig0018118:+9364 None:intergenic
TATCTCAAGAACAAGCTATG+TGG 0.592377 tig0018118:-9498 Msa1364360:CDS
TGTTACAGTATCCACCGAAA+GGG 0.593158 tig0018118:-10055 Msa1364360:CDS
CAAGTGCATGGAACATTCCA+CGG 0.594597 tig0018118:-9309 Msa1364360:CDS
CCTCATACCAGTGAAGAACA+AGG 0.595660 tig0018118:-9586 Msa1364360:CDS
GGCCATAGCTTCCCACCACA+AGG 0.598341 tig0018118:-9472 Msa1364360:CDS
CATTATGAAAGAAAGAAGCC+AGG 0.602999 tig0018118:+8561 None:intergenic
AATCCTGATGGACAAAAGGC+CGG 0.603585 tig0018118:+9376 None:intergenic
GGATCAATCAAATAAATCGT+CGG 0.604223 tig0018118:-9560 Msa1364360:CDS
ACCTTCCGTCGACTTTGTGG+AGG 0.610776 tig0018118:+9534 None:intergenic
GGATTCCATGGTAAATGCCA+AGG 0.611774 tig0018118:+9427 None:intergenic
CTGTTACAGTATCCACCGAA+AGG 0.612746 tig0018118:-10056 Msa1364360:CDS
CTAAAATCAAGCGAAGGAGA+TGG 0.613491 tig0018118:-9196 Msa1364360:CDS
TGTAGCAACCTCCCTTTCGG+TGG 0.614289 tig0018118:+10044 None:intergenic
GAAAATAGCCACCTTGTGGT+GGG 0.619044 tig0018118:+9461 None:intergenic
GATGATGGTTGTGCTTGCCG+TGG 0.621977 tig0018118:+9292 None:intergenic
ATGCTACTACAACGAGGACA+AGG 0.624918 tig0018118:+9937 None:intergenic
AGTTGCAGGATAGAATGGCA+TGG 0.625575 tig0018118:+9351 None:intergenic
TCTCGTGAAAAGGTTGAACA+CGG 0.626649 tig0018118:+8860 None:intergenic
GAGCTCACTGATTCCACCAC+CGG 0.627819 tig0018118:-9395 Msa1364360:CDS
CAGTTCTTGCAGAAATGACG+GGG 0.628674 tig0018118:+9871 None:intergenic
GTTGTACTATGCCAAGTGCA+TGG 0.629999 tig0018118:-9321 Msa1364360:CDS
ACAAGAATGCTCCATTAATG+TGG 0.631067 tig0018118:+8710 None:intergenic
TAAGCGAAGAAAAGAGCTTG+TGG 0.632631 tig0018118:-9162 Msa1364360:CDS
TACCAGTGAAGAACAAGGGG+AGG 0.634191 tig0018118:-9581 Msa1364360:CDS
TACAGTATCCACCGAAAGGG+AGG 0.634842 tig0018118:-10052 Msa1364360:CDS
ACCTCCACAAAGTCGACGGA+AGG 0.636006 tig0018118:-9535 Msa1364360:CDS
ACAAGAACATGAGATTGAGA+AGG 0.637128 tig0018118:-11452 Msa1364360:intron
AGGATAAGAATAAGAATGAG+GGG 0.637694 tig0018118:-8599 Msa1364360:three_prime_UTR
AACATGCTAAAATCAAGCGA+AGG 0.639475 tig0018118:-9202 Msa1364360:CDS
CTCATACCAGTGAAGAACAA+GGG 0.644364 tig0018118:-9585 Msa1364360:CDS
TCATACCAGTGAAGAACAAG+GGG 0.646136 tig0018118:-9584 Msa1364360:CDS
AGAAACGTACCAGTAGGTGC+CGG 0.653444 tig0018118:-9817 Msa1364360:CDS
TTTGAGGATCGATGACTCAG+AGG 0.659653 tig0018118:-9128 Msa1364360:CDS
CAGAGATATTGGACTGCCGG+TGG 0.661022 tig0018118:-9847 Msa1364360:CDS
CTTAGGTAAACATTCAAGGG+AGG 0.664142 tig0018118:-9227 Msa1364360:CDS
GGTTACCTCCACAAAGTCGA+CGG 0.667234 tig0018118:-9539 Msa1364360:CDS
TGAGGAAAATAGCCACCTTG+TGG 0.671039 tig0018118:+9457 None:intergenic
GCACAACCATCATCACCGAA+TGG 0.672816 tig0018118:-9283 Msa1364360:CDS
ACCATGAGAAACGTACCAGT+AGG 0.705884 tig0018118:-9823 Msa1364360:CDS
CCTGATGGACAAAAGGCCGG+TGG 0.706000 tig0018118:+9379 None:intergenic
GGACGAGACAAGTAACACAC+AGG 0.712817 tig0018118:-9992 Msa1364360:CDS
GCCTGAAAGAGTCTTCGCGG+AGG 0.713974 tig0018118:+9043 None:intergenic
CATAGCTTCCCACCACAAGG+TGG 0.714183 tig0018118:-9469 Msa1364360:CDS
AGTCTTGCAAGCCAATCCGG+CGG 0.717524 tig0018118:-8972 Msa1364360:CDS
AAATGCCAAGGAGTTCCATG+AGG 0.739950 tig0018118:+9439 None:intergenic
TTCATGAATCCAGAACACAA+CGG 0.740548 tig0018118:-10178 Msa1364360:intron
GTGTCCATGCTACTACAACG+AGG 0.808267 tig0018118:+9931 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGAGAATTTTGATTTTT+TGG - tig0018118:8739-8758 Msa1364360:three_prime_UTR 15.0%
!!! AATAATTTTTTCACTTTTCA+AGG - tig0018118:8940-8959 Msa1364360:CDS 15.0%
!! TTAAACTACATAGTATAATT+TGG + tig0018118:9034-9053 None:intergenic 15.0%
!!! TAAGTTTTTGAAGTTATATT+TGG - tig0018118:9051-9070 Msa1364360:CDS 15.0%
!! TTTATTTCATATACCAAATA+AGG + tig0018118:9117-9136 None:intergenic 15.0%
!!! TTCTTTTTATGATATTAATG+TGG - tig0018118:9913-9932 Msa1364360:CDS 15.0%
!!! TCATAATCACTTATATATTT+TGG - tig0018118:11244-11263 Msa1364360:intron 15.0%
!! ATTATTTAGTTGAAACTTTA+TGG - tig0018118:11673-11692 Msa1364360:five_prime_UTR 15.0%
!! AAAAAGAATGATGTTGTAAA+AGG + tig0018118:8478-8497 None:intergenic 20.0%
!! ATTCTTCCATTTCAAATAAA+GGG + tig0018118:8792-8811 None:intergenic 20.0%
!! TATTCTTCCATTTCAAATAA+AGG + tig0018118:8793-8812 None:intergenic 20.0%
!! TGAAATGGAAGAATATTTAA+TGG - tig0018118:8798-8817 Msa1364360:three_prime_UTR 20.0%
!! GAAATGGAAGAATATTTAAT+GGG - tig0018118:8799-8818 Msa1364360:three_prime_UTR 20.0%
!! ATTGAAAGAATTACCTTATT+TGG - tig0018118:9101-9120 Msa1364360:CDS 20.0%
!!! AAATCATGTTAGTTTATGTT+TGG + tig0018118:9379-9398 None:intergenic 20.0%
!!! CTTTTTCTTGTTTGAATTTT+GGG - tig0018118:9411-9430 Msa1364360:CDS 20.0%
!!! TTTGAATTTTGGGTTTTATA+TGG - tig0018118:9421-9440 Msa1364360:CDS 20.0%
!! TTTATTGCGAAAAAAACATT+TGG + tig0018118:9781-9800 None:intergenic 20.0%
!! CATGAATAAATACTAATCTT+TGG - tig0018118:9958-9977 Msa1364360:CDS 20.0%
!!! TATTTTGGTAATTGTGTTTT+TGG - tig0018118:11259-11278 Msa1364360:intron 20.0%
!! TTATATATACATGAACTAAC+AGG + tig0018118:11478-11497 None:intergenic 20.0%
!! CTTATTTATATACATCTAAG+AGG + tig0018118:11544-11563 None:intergenic 20.0%
!! CTCTTAGATGTATATAAATA+AGG - tig0018118:11542-11561 Msa1364360:CDS 20.0%
!!! GTTTTTAGCAACAAAAATGT+TGG - tig0018118:8535-8554 Msa1364360:three_prime_UTR 25.0%
!! TTATGACCCTTTATTTGAAA+TGG - tig0018118:8783-8802 Msa1364360:three_prime_UTR 25.0%
!!! AAAATTCATTTGACTTGCTT+TGG - tig0018118:8847-8866 Msa1364360:three_prime_UTR 25.0%
!! ATTTTGGATTGTTTTCAATC+TGG - tig0018118:8977-8996 Msa1364360:CDS 25.0%
!! TTTTGGATTGTTTTCAATCT+GGG - tig0018118:8978-8997 Msa1364360:CDS 25.0%
!! TTTGAAGTTATATTTGGCTT+TGG - tig0018118:9057-9076 Msa1364360:CDS 25.0%
!!! GGTGAAGTTTTATTTATTCA+TGG - tig0018118:9078-9097 Msa1364360:CDS 25.0%
!! TATTGAAAGGAAAGTGATTT+TGG - tig0018118:9252-9271 Msa1364360:CDS 25.0%
!! TTAGTTTATGTTTGGAATCA+CGG + tig0018118:9371-9390 None:intergenic 25.0%
!!! GCTTTTTCTTGTTTGAATTT+TGG - tig0018118:9410-9429 Msa1364360:CDS 25.0%
!!! TTTAAAATTCGACAGTTTTC+TGG + tig0018118:9459-9478 None:intergenic 25.0%
!!! AAACTGTCGAATTTTAAAAC+TGG - tig0018118:9461-9480 Msa1364360:CDS 25.0%
! ACTACAAATTAACAAGACTT+CGG + tig0018118:11356-11375 None:intergenic 25.0%
! TAAGGATAAGAATAAGAATG+AGG - tig0018118:11560-11579 Msa1364360:CDS 25.0%
! AAGGATAAGAATAAGAATGA+GGG - tig0018118:11561-11580 Msa1364360:CDS 25.0%
!! CCAACATGAATTTCTGAAAT+TGG + tig0018118:8602-8621 None:intergenic 30.0%
CCAATTTCAGAAATTCATGT+TGG - tig0018118:8599-8618 Msa1364360:three_prime_UTR 30.0%
!! GGAGTTTCAATGTTTGATTT+TGG - tig0018118:8961-8980 Msa1364360:CDS 30.0%
AGAATTAGGAAGCTATTGAA+AGG - tig0018118:9239-9258 Msa1364360:CDS 30.0%
GTTCAACAAAATCACAATCA+CGG - tig0018118:9320-9339 Msa1364360:CDS 30.0%
CACAAACTGATACAAAAACA+AGG - tig0018118:9649-9668 Msa1364360:CDS 30.0%
TCGAATAAAAAGAACGAAGA+TGG - tig0018118:10017-10036 Msa1364360:CDS 30.0%
GTGCAAAATTACACAAGAAA+TGG - tig0018118:10518-10537 Msa1364360:intron 30.0%
GGATCAATCAAATAAATCGT+CGG - tig0018118:10601-10620 Msa1364360:intron 30.0%
ATTCTATCCTGCAACTTATT+GGG - tig0018118:10817-10836 Msa1364360:intron 30.0%
AACCTTAGGTAAACATTCAA+GGG - tig0018118:10931-10950 Msa1364360:intron 30.0%
!!! GTTGTTGTTTTTAATCCCAA+GGG + tig0018118:11086-11105 None:intergenic 30.0%
! TTTGTGATTTTCTCGTGAAA+AGG + tig0018118:11314-11333 None:intergenic 30.0%
TATATACATCTAAGAGGTCT+TGG + tig0018118:11538-11557 None:intergenic 30.0%
AGGATAAGAATAAGAATGAG+GGG - tig0018118:11562-11581 Msa1364360:CDS 30.0%
!!! GTTTTTCATTGACTCTAATC+TGG - tig0018118:11631-11650 Msa1364360:exon 30.0%
TTTAGTTGAAACTTTATGGC+TGG - tig0018118:11677-11696 Msa1364360:five_prime_UTR 30.0%
ACAAGAACATGAGATTGAGA+AGG - tig0018118:8709-8728 Msa1364360:three_prime_UTR 35.0%
ACCTTGTTGATGCTAGAATT+AGG - tig0018118:9225-9244 Msa1364360:CDS 35.0%
TCCTAATTCTAGCATCAACA+AGG + tig0018118:9229-9248 None:intergenic 35.0%
! ATTCGACAGTTTTCTGGATT+TGG + tig0018118:9453-9472 None:intergenic 35.0%
! TCAGTTTTACTCAATTCCCT+TGG - tig0018118:9537-9556 Msa1364360:CDS 35.0%
AATTCCCTTGGTTTAATGTC+TGG - tig0018118:9549-9568 Msa1364360:CDS 35.0%
AACACCAGACATTAAACCAA+GGG + tig0018118:9556-9575 None:intergenic 35.0%
AAACACCAGACATTAAACCA+AGG + tig0018118:9557-9576 None:intergenic 35.0%
TTAATGTCTGGTGTTTGTGT+CGG - tig0018118:9561-9580 Msa1364360:CDS 35.0%
TCGAATGATAGGATCCAATT+TGG + tig0018118:9610-9629 None:intergenic 35.0%
GTTAGGAAACATCGAATGAT+AGG + tig0018118:9621-9640 None:intergenic 35.0%
CAGTTTGTGTAGAATCTGTT+AGG + tig0018118:9638-9657 None:intergenic 35.0%
CATTAGCAGTAGACTCAATA+TGG + tig0018118:9691-9710 None:intergenic 35.0%
TTCATGAATCCAGAACACAA+CGG - tig0018118:9983-10002 Msa1364360:CDS 35.0%
! ATTCTTCTGTTGATTGTGCA+AGG + tig0018118:10046-10065 None:intergenic 35.0%
! CTATTTTGTCCGGTTTTTTG+AGG + tig0018118:10202-10221 None:intergenic 35.0%
AACGGTACAATCCTTACATT+TGG - tig0018118:10437-10456 Msa1364360:intron 35.0%
TGAATCACATAAAGGTGAGT+TGG + tig0018118:10465-10484 None:intergenic 35.0%
TTGTTCTTGAGATACATTGG+TGG + tig0018118:10657-10676 None:intergenic 35.0%
! AGCTTGTTCTTGAGATACAT+TGG + tig0018118:10660-10679 None:intergenic 35.0%
TATCTCAAGAACAAGCTATG+TGG - tig0018118:10663-10682 Msa1364360:intron 35.0%
CAATAAGTTGCAGGATAGAA+TGG + tig0018118:10818-10837 None:intergenic 35.0%
CATTCTATCCTGCAACTTAT+TGG - tig0018118:10816-10835 Msa1364360:intron 35.0%
TTCTATCCTGCAACTTATTG+GGG - tig0018118:10818-10837 Msa1364360:intron 35.0%
GAGAGTTTGTAGTAGAGTTA+TGG + tig0018118:10910-10929 None:intergenic 35.0%
CTTGAATGTTTACCTAAGGT+TGG + tig0018118:10932-10951 None:intergenic 35.0%
CAACCTTAGGTAAACATTCA+AGG - tig0018118:10930-10949 Msa1364360:intron 35.0%
AACATGCTAAAATCAAGCGA+AGG - tig0018118:10959-10978 Msa1364360:intron 35.0%
TGTGGTTTCCTAAAACTTTG+AGG - tig0018118:11017-11036 Msa1364360:intron 35.0%
! TCATCGATCCTCAAAGTTTT+AGG + tig0018118:11028-11047 None:intergenic 35.0%
AAGCAGAAAAAAGCTCTTTC+TGG - tig0018118:11056-11075 Msa1364360:intron 35.0%
!!! CGTTGTTGTTTTTAATCCCA+AGG + tig0018118:11087-11106 None:intergenic 35.0%
! ACCAACCTTTTTCTTCTGTT+CGG + tig0018118:11398-11417 None:intergenic 35.0%
TAATGTGGTTCTTGTTCAGT+TGG + tig0018118:11439-11458 None:intergenic 35.0%
CTGAACAAGAACCACATTAA+TGG - tig0018118:11440-11459 Msa1364360:intron 35.0%
ACAAGAATGCTCCATTAATG+TGG + tig0018118:11454-11473 None:intergenic 35.0%
CATTATGAAAGAAAGAAGCC+AGG + tig0018118:11603-11622 None:intergenic 35.0%
CTAATCTGGCATGGTTTATT+AGG - tig0018118:11645-11664 Msa1364360:five_prime_UTR 35.0%
GAACTGAGAGTTACAAGAGT+TGG + tig0018118:9195-9214 None:intergenic 40.0%
ACTCTTGTAACTCTCAGTTC+AGG - tig0018118:9195-9214 Msa1364360:CDS 40.0%
TAGTAAAAGCCACACTTTCG+AGG - tig0018118:9298-9317 Msa1364360:CDS 40.0%
TTTGTTGAACCTCGAAAGTG+TGG + tig0018118:9310-9329 None:intergenic 40.0%
CGGTGAATTTCACGAAATCA+TGG + tig0018118:9351-9370 None:intergenic 40.0%
GGAATCTGCTCAAAGATGTT+AGG + tig0018118:9487-9506 None:intergenic 40.0%
GGGGATTAACTCATCCAAAT+TGG - tig0018118:9593-9612 Msa1364360:CDS 40.0%
TCATGAATCCAGAACACAAC+GGG - tig0018118:9984-10003 Msa1364360:CDS 40.0%
!! TCAGTTCTAGAAGTTGCATC+TGG + tig0018118:10077-10096 None:intergenic 40.0%
TGTTACAGTATCCACCGAAA+GGG - tig0018118:10106-10125 Msa1364360:CDS 40.0%
TTCAAAGACCGAAGAAGAAC+AGG - tig0018118:10148-10167 Msa1364360:CDS 40.0%
GGATAAGCACCTCAAAAAAC+CGG - tig0018118:10190-10209 Msa1364360:intron 40.0%
! GGACAAGGAACTATTTTGTC+CGG + tig0018118:10212-10231 None:intergenic 40.0%
AAGCGACACTTCAGAATTCT+CGG - tig0018118:10393-10412 Msa1364360:intron 40.0%
TACCGTTGCATTTCAAGGAA+GGG + tig0018118:10424-10443 None:intergenic 40.0%
GATTGTACCGTTGCATTTCA+AGG + tig0018118:10429-10448 None:intergenic 40.0%
! GTGAGTTGGATCCAAATGTA+AGG + tig0018118:10451-10470 None:intergenic 40.0%
CTCACCTTTATGTGATTCAG+TGG - tig0018118:10466-10485 Msa1364360:intron 40.0%
GATGCCACTGAATCACATAA+AGG + tig0018118:10473-10492 None:intergenic 40.0%
CTCATACCAGTGAAGAACAA+GGG - tig0018118:10576-10595 Msa1364360:intron 40.0%
TCATACCAGTGAAGAACAAG+GGG - tig0018118:10577-10596 Msa1364360:intron 40.0%
CAAGAACAAGCTATGTGGAA+TGG - tig0018118:10668-10687 Msa1364360:intron 40.0%
! ATTTTCCTCATGGAACTCCT+TGG - tig0018118:10717-10736 Msa1364360:intron 40.0%
! GGAAAATCCTGATGGACAAA+AGG + tig0018118:10792-10811 None:intergenic 40.0%
AATGGCATGGAAAATCCTGA+TGG + tig0018118:10800-10819 None:intergenic 40.0%
! GAGTTATGGTTTGCACCATT+CGG + tig0018118:10896-10915 None:intergenic 40.0%
ACTACAAACTCTCCAACCTT+AGG - tig0018118:10917-10936 Msa1364360:intron 40.0%
CTCCCTTGAATGTTTACCTA+AGG + tig0018118:10936-10955 None:intergenic 40.0%
CTTAGGTAAACATTCAAGGG+AGG - tig0018118:10934-10953 Msa1364360:intron 40.0%
CTAAAATCAAGCGAAGGAGA+TGG - tig0018118:10965-10984 Msa1364360:intron 40.0%
TAAGCGAAGAAAAGAGCTTG+TGG - tig0018118:10999-11018 Msa1364360:intron 40.0%
! TTTTCTCGTCGCACTTTGAA+GGG + tig0018118:11147-11166 None:intergenic 40.0%
! TTTTTCTCGTCGCACTTTGA+AGG + tig0018118:11148-11167 None:intergenic 40.0%
TTGGTTGCGTCAAACTGATT+TGG - tig0018118:11278-11297 Msa1364360:intron 40.0%
TCTCGTGAAAAGGTTGAACA+CGG + tig0018118:11304-11323 None:intergenic 40.0%
! ACCTTTTTCTTCTGTTCGGT+TGG + tig0018118:11394-11413 None:intergenic 40.0%
ACCGAACAGAAGAAAAAGGT+TGG - tig0018118:11394-11413 Msa1364360:intron 40.0%
GGGTTCAATTTGTACTTTCC+TGG - tig0018118:11582-11601 Msa1364360:CDS 40.0%
!! TCATTGACTCTAATCTGGCA+TGG - tig0018118:11636-11655 Msa1364360:five_prime_UTR 40.0%
GACTCTGCGATCAAACTGTT+TGG - tig0018118:8566-8585 Msa1364360:three_prime_UTR 45.0%
AAGTGCAGAGCATATGATGC+AGG + tig0018118:9508-9527 None:intergenic 45.0%
! TGTTTGTGTCGGTGCTTCAT+AGG - tig0018118:9572-9591 Msa1364360:CDS 45.0%
! GTTTGTGTCGGTGCTTCATA+GGG - tig0018118:9573-9592 Msa1364360:CDS 45.0%
! TTTGTGTCGGTGCTTCATAG+GGG - tig0018118:9574-9593 Msa1364360:CDS 45.0%
GTCTACTGCTAATGCTCTCA+TGG - tig0018118:9697-9716 Msa1364360:CDS 45.0%
! GTTTTTCTCCCGTTGTGTTC+TGG + tig0018118:9995-10014 None:intergenic 45.0%
CTGTTACAGTATCCACCGAA+AGG - tig0018118:10105-10124 Msa1364360:CDS 45.0%
CAATGTAGCAACCTCCCTTT+CGG + tig0018118:10123-10142 None:intergenic 45.0%
TGTCTCGTCCTGTTCTTCTT+CGG + tig0018118:10159-10178 None:intergenic 45.0%
ATGCTACTACAACGAGGACA+AGG + tig0018118:10227-10246 None:intergenic 45.0%
TTGTCCTCGTTGTAGTAGCA+TGG - tig0018118:10226-10245 Msa1364360:intron 45.0%
CAGTTCTTGCAGAAATGACG+GGG + tig0018118:10293-10312 None:intergenic 45.0%
GCAGTTCTTGCAGAAATGAC+GGG + tig0018118:10294-10313 None:intergenic 45.0%
GGCAGTTCTTGCAGAAATGA+CGG + tig0018118:10295-10314 None:intergenic 45.0%
GCAAGAACTGCCAGAGATAT+TGG - tig0018118:10303-10322 Msa1364360:intron 45.0%
TACGTTTCTCATGGTTCCAC+CGG + tig0018118:10333-10352 None:intergenic 45.0%
ACCATGAGAAACGTACCAGT+AGG - tig0018118:10338-10357 Msa1364360:intron 45.0%
ACCTACTGGTACGTTTCTCA+TGG + tig0018118:10342-10361 None:intergenic 45.0%
!!! GCTCTTGTTTTTTCTGCGAC+CGG + tig0018118:10366-10385 None:intergenic 45.0%
CACCCTTCCTTGAAATGCAA+CGG - tig0018118:10419-10438 Msa1364360:intron 45.0%
GTACCGTTGCATTTCAAGGA+AGG + tig0018118:10425-10444 None:intergenic 45.0%
CCTTGTTCTTCACTGGTATG+AGG + tig0018118:10578-10597 None:intergenic 45.0%
CCTCATACCAGTGAAGAACA+AGG - tig0018118:10575-10594 Msa1364360:intron 45.0%
GAAAATAGCCACCTTGTGGT+GGG + tig0018118:10703-10722 None:intergenic 45.0%
TGAGGAAAATAGCCACCTTG+TGG + tig0018118:10707-10726 None:intergenic 45.0%
!! CAAGGTGGCTATTTTCCTCA+TGG - tig0018118:10707-10726 Msa1364360:intron 45.0%
AAATGCCAAGGAGTTCCATG+AGG + tig0018118:10725-10744 None:intergenic 45.0%
GAACTCCTTGGCATTTACCA+TGG - tig0018118:10729-10748 Msa1364360:intron 45.0%
GGATTCCATGGTAAATGCCA+AGG + tig0018118:10737-10756 None:intergenic 45.0%
ATCAGTGAGCTCGTTTGCAT+CGG + tig0018118:10758-10777 None:intergenic 45.0%
! AATCCTGATGGACAAAAGGC+CGG + tig0018118:10788-10807 None:intergenic 45.0%
AGTTGCAGGATAGAATGGCA+TGG + tig0018118:10813-10832 None:intergenic 45.0%
GTACAACCCCAATAAGTTGC+AGG + tig0018118:10827-10846 None:intergenic 45.0%
GTTGTACTATGCCAAGTGCA+TGG - tig0018118:10840-10859 Msa1364360:intron 45.0%
CAAGTGCATGGAACATTCCA+CGG - tig0018118:10852-10871 Msa1364360:intron 45.0%
! TTTGCACCATTCGGTGATGA+TGG + tig0018118:10887-10906 None:intergenic 45.0%
TTTGAGGATCGATGACTCAG+AGG - tig0018118:11033-11052 Msa1364360:intron 45.0%
AATGCCTGAAAGAGTCTTCG+CGG + tig0018118:11124-11143 None:intergenic 45.0%
GTGCGACGAGAAAAATCACT+CGG - tig0018118:11153-11172 Msa1364360:intron 45.0%
TTCAGTCTTGCAAGCCAATC+CGG - tig0018118:11186-11205 Msa1364360:intron 45.0%
GCCAACCGAACAGAAGAAAA+AGG - tig0018118:11390-11409 Msa1364360:intron 45.0%
TACAGTATCCACCGAAAGGG+AGG - tig0018118:10109-10128 Msa1364360:CDS 50.0%
GGACGAGACAAGTAACACAC+AGG - tig0018118:10169-10188 Msa1364360:intron 50.0%
GTGTCCATGCTACTACAACG+AGG + tig0018118:10233-10252 None:intergenic 50.0%
! TCTTGCAGAAATGACGGGGT+TGG + tig0018118:10289-10308 None:intergenic 50.0%
TGCCAGAGATATTGGACTGC+CGG - tig0018118:10311-10330 Msa1364360:intron 50.0%
AGAAACGTACCAGTAGGTGC+CGG - tig0018118:10344-10363 Msa1364360:intron 50.0%
TACCAGTGAAGAACAAGGGG+AGG - tig0018118:10580-10599 Msa1364360:intron 50.0%
ATCCTCCCCTTGTTCTTCAC+TGG + tig0018118:10585-10604 None:intergenic 50.0%
GGTTACCTCCACAAAGTCGA+CGG - tig0018118:10622-10641 Msa1364360:intron 50.0%
GGAAAATAGCCACCTTGTGG+TGG + tig0018118:10704-10723 None:intergenic 50.0%
CTCGTTTGCATCGGATTCCA+TGG + tig0018118:10749-10768 None:intergenic 50.0%
CGTGGAATGTTCCATGCACT+TGG + tig0018118:10854-10873 None:intergenic 50.0%
GCACAACCATCATCACCGAA+TGG - tig0018118:10878-10897 Msa1364360:intron 50.0%
AGCTCTTTCTGGACAACCCT+TGG - tig0018118:11067-11086 Msa1364360:intron 50.0%
GCTCTTTCTGGACAACCCTT+GGG - tig0018118:11068-11087 Msa1364360:intron 50.0%
TGTAGCAACCTCCCTTTCGG+TGG + tig0018118:10120-10139 None:intergenic 55.0%
CACCGGCAGTCCAATATCTC+TGG + tig0018118:10316-10335 None:intergenic 55.0%
CAGAGATATTGGACTGCCGG+TGG - tig0018118:10314-10333 Msa1364360:intron 55.0%
ACCTCCACAAAGTCGACGGA+AGG - tig0018118:10626-10645 Msa1364360:intron 55.0%
!! ACCTTCCGTCGACTTTGTGG+AGG + tig0018118:10630-10649 None:intergenic 55.0%
!! TGCACCTTCCGTCGACTTTG+TGG + tig0018118:10633-10652 None:intergenic 55.0%
! CACCTTGTGGTGGGAAGCTA+TGG + tig0018118:10694-10713 None:intergenic 55.0%
CATAGCTTCCCACCACAAGG+TGG - tig0018118:10692-10711 Msa1364360:intron 55.0%
!! GAGCTCACTGATTCCACCAC+CGG - tig0018118:10766-10785 Msa1364360:intron 55.0%
! GATGATGGTTGTGCTTGCCG+TGG + tig0018118:10872-10891 None:intergenic 55.0%
TCCTCCGCGAAGACTCTTTC+AGG - tig0018118:11117-11136 Msa1364360:intron 55.0%
AGTCTTGCAAGCCAATCCGG+CGG - tig0018118:11189-11208 Msa1364360:intron 55.0%
TTTCTGCGACCGGCACCTAC+TGG + tig0018118:10356-10375 None:intergenic 60.0%
GGCCATAGCTTCCCACCACA+AGG - tig0018118:10689-10708 Msa1364360:intron 60.0%
GATGGACAAAAGGCCGGTGG+TGG + tig0018118:10782-10801 None:intergenic 60.0%
! CCTGATGGACAAAAGGCCGG+TGG + tig0018118:10785-10804 None:intergenic 60.0%
! CCACCGGCCTTTTGTCCATC+AGG - tig0018118:10782-10801 Msa1364360:intron 60.0%
GCCTGAAAGAGTCTTCGCGG+AGG + tig0018118:11121-11140 None:intergenic 60.0%
CCTAGACAATGCCGCCGGAT+TGG + tig0018118:11203-11222 None:intergenic 60.0%
CCAATCCGGCGGCATTGTCT+AGG - tig0018118:11200-11219 Msa1364360:intron 60.0%
AGCGACCTAGACAATGCCGC+CGG + tig0018118:11208-11227 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0018118 gene 8451 11732 8451 ID=Msa1364360;Name=Msa1364360
tig0018118 mRNA 8451 11732 8451 ID=Msa1364360-mRNA-1;Parent=Msa1364360;Name=Msa1364360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=100|1|1|1|1|1|2|483|477
tig0018118 exon 8451 10187 8451 ID=Msa1364360-mRNA-1:exon:13980;Parent=Msa1364360-mRNA-1
tig0018118 exon 11453 11732 11453 ID=Msa1364360-mRNA-1:exon:13979;Parent=Msa1364360-mRNA-1
tig0018118 five_prime_UTR 11633 11732 11633 ID=Msa1364360-mRNA-1:five_prime_utr;Parent=Msa1364360-mRNA-1
tig0018118 CDS 11453 11632 11453 ID=Msa1364360-mRNA-1:cds;Parent=Msa1364360-mRNA-1
tig0018118 CDS 8934 10187 8934 ID=Msa1364360-mRNA-1:cds;Parent=Msa1364360-mRNA-1
tig0018118 three_prime_UTR 8451 8933 8451 ID=Msa1364360-mRNA-1:three_prime_utr;Parent=Msa1364360-mRNA-1
Gene Sequence

>Msa1364360

ATGTTGGAGACAAAAGACTCTGCGATCAAACTGTTTGGAAAAACAATTCCAATTTCAGAAATTCATGTTGGAAAAACAATTTCAGAGAGTATTGATGATCATCATCATGATTTTTCTACAAACTCTTCAAATGAGTCTCATAATAATAAAGATGCTTCACAAGAACATGAGATTGAGAAGAACACAACGGGAGAAAAACTGTCGAATAAAAAGAACGAAGATGGATTCCTTGCACAATCAACAGAAGAATTCACTAATCCAGATGCAACTTCTAGAACTGATGAAGAATCTGTTACAGTATCCACCGAAAGGGAGGTTGCTACATTGAAAACTTCAAAGACCGAAGAAGAACAGGACGAGACAAGTAACACACAGGATAAGCACCTCAAAAAACCGGACAAAATAGTTCCTTGTCCTCGTTGTAGTAGCATGGACACGAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGTCATTTCTGCAAGAACTGCCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCAGTAGGTGCCGGTCGCAGAAAAAACAAGAGCTCTTCAGAAGCGACACTTCAGAATTCTCGGATACACCCTTCCTTGAAATGCAACGGTACAATCCTTACATTTGGATCCAACTCACCTTTATGTGATTCAGTGGCATCTGTTTTGAAACTTGCTGATAAAACAGTGCAAAATTACACAAGAAATGGATATCATAAACATGAAGAACTAAGAATTTGTGTTCCTCATACCAGTGAAGAACAAGGGGAGGATCAATCAAATAAATCGTCGGTTACCTCCACAAAGTCGACGGAAGGTGCAACCACCAATGTATCTCAAGAACAAGCTATGTGGAATGGCCATAGCTTCCCACCACAAGGTGGCTATTTTCCTCATGGAACTCCTTGGCATTTACCATGGAATCCGATGCAAACGAGCTCACTGATTCCACCACCGGCCTTTTGTCCATCAGGATTTTCCATGCCATTCTATCCTGCAACTTATTGGGGTTGTACTATGCCAAGTGCATGGAACATTCCACGGCAAGCACAACCATCATCACCGAATGGTGCAAACCATAACTCTACTACAAACTCTCCAACCTTAGGTAAACATTCAAGGGAGGAAAACATGCTAAAATCAAGCGAAGGAGATGGTAAGAAAGAAATAAGCGAAGAAAAGAGCTTGTGGTTTCCTAAAACTTTGAGGATCGATGACTCAGAGGAAGCAGAAAAAAGCTCTTTCTGGACAACCCTTGGGATTAAAAACAACAACGCTGACTCAGTTCCTCCGCGAAGACTCTTTCAGGCATTCCCTTCAAAGTGCGACGAGAAAAATCACTCGGTACAAGTGTCTTCAGTCTTGCAAGCCAATCCGGCGGCATTGTCTAGGTCGCTTCACTTTCACGAGACTTCATAA
Protein sequence

>Msa1364360

MLETKDSAIKLFGKTIPISEIHVGKTISESIDDHHHDFSTNSSNESHNNKDASQEHEIEKNTTGEKLSNKKNEDGFLAQSTEEFTNPDATSRTDEESVTVSTEREVATLKTSKTEEEQDETSNTQDKHLKKPDKIVPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSEATLQNSRIHPSLKCNGTILTFGSNSPLCDSVASVLKLADKTVQNYTRNGYHKHEELRICVPHTSEEQGEDQSNKSSVTSTKSTEGATTNVSQEQAMWNGHSFPPQGGYFPHGTPWHLPWNPMQTSSLIPPPAFCPSGFSMPFYPATYWGCTMPSAWNIPRQAQPSSPNGANHNSTTNSPTLGKHSREENMLKSSEGDGKKEISEEKSLWFPKTLRIDDSEEAEKSSFWTTLGIKNNNADSVPPRRLFQAFPSKCDEKNHSVQVSSVLQANPAALSRSLHFHETS*