Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102360 | XP_013443380.1 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102360 | sp|P57758|CTNS_ARATH | 72.157 | 255 | 69 | 1 | 1 | 255 | 1 | 253 | 1.52e-135 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102360 | A0A072TV48 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604290 | Msa1102360 | 0.809055 | 2.285825e-50 | -8.615850e-47 |
| Msa0685090 | Msa1102360 | 0.801635 | 8.206285e-49 | -8.615850e-47 |
| Msa0994370 | Msa1102360 | 0.810763 | 9.803967e-51 | -8.615850e-47 |
| Msa1016000 | Msa1102360 | 0.819948 | 8.883629e-53 | -8.615850e-47 |
| Msa1057280 | Msa1102360 | 0.811288 | 7.547603e-51 | -8.615850e-47 |
| Msa1102360 | Msa1150710 | 0.803271 | 3.775609e-49 | -8.615850e-47 |
| Msa1102360 | Msa1206100 | 0.803613 | 3.206026e-49 | -8.615850e-47 |
| Msa1102360 | Msa1329550 | 0.807879 | 4.074234e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102360 | MtrunA17_Chr7g0230141 | 98.148 | 270 | 5 | 0 | 1 | 270 | 1 | 270 | 0.0 | 546 |
| Msa1102360 | MtrunA17_Chr7g0230151 | 71.119 | 277 | 73 | 2 | 1 | 270 | 1 | 277 | 1.96e-146 | 411 |
| Msa1102360 | MtrunA17_Chr6g0458341 | 61.011 | 277 | 99 | 2 | 2 | 270 | 4 | 279 | 1.28e-117 | 338 |
| Msa1102360 | MtrunA17_Chr6g0458361 | 59.244 | 238 | 90 | 2 | 34 | 269 | 19 | 251 | 3.77e-99 | 290 |
| Msa1102360 | MtrunA17_Chr6g0458381 | 48.913 | 184 | 66 | 3 | 115 | 270 | 3 | 186 | 2.53e-53 | 171 |
| Msa1102360 | MtrunA17_Chr6g0458371 | 61.947 | 113 | 43 | 0 | 1 | 113 | 1 | 113 | 1.09e-44 | 149 |
| Msa1102360 | MtrunA17_Chr6g0458351 | 69.048 | 42 | 13 | 0 | 1 | 42 | 1 | 42 | 5.60e-14 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102360 | AT5G40670.1 | 72.157 | 255 | 69 | 1 | 1 | 255 | 1 | 253 | 1.55e-136 | 386 |
Find 35 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTCACAAACCTCTTTC+TGG | 0.134131 | 7_3:-35167295 | None:intergenic |
| CTTTATAACATTATATAAAA+AGG | 0.176506 | 7_3:-35170838 | None:intergenic |
| CATGTCTCTTATGAAGCTTT+AGG | 0.224216 | 7_3:+35166981 | Msa1102360:CDS |
| ATGTCTCTTATGAAGCTTTA+GGG | 0.295292 | 7_3:+35166982 | Msa1102360:CDS |
| TAACATCATAGATTGCAATT+TGG | 0.357252 | 7_3:-35169436 | None:intergenic |
| GTACTGATGGATGGAGCATT+TGG | 0.371191 | 7_3:+35170289 | Msa1102360:CDS |
| AGAAATCGATCATGTCTTCT+TGG | 0.379460 | 7_3:+35166943 | Msa1102360:exon |
| TTGCATTGCACAATCATCAT+TGG | 0.400882 | 7_3:+35169633 | Msa1102360:CDS |
| AGAACTATATTTGAGAATTG+AGG | 0.427451 | 7_3:-35170882 | None:intergenic |
| TCTTAAACTTTCGCAGGAAA+AGG | 0.446843 | 7_3:+35167051 | Msa1102360:CDS |
| GAACTATATTTGAGAATTGA+GGG | 0.449381 | 7_3:-35170881 | None:intergenic |
| TTGTGTTTGATTAGTGTGGT+TGG | 0.463223 | 7_3:+35167158 | Msa1102360:intron |
| GAGCATTTGGAACATTCTAC+TGG | 0.464204 | 7_3:+35170302 | Msa1102360:CDS |
| ATATTAGTGACCTTGATCAA+TGG | 0.482678 | 7_3:-35170370 | None:intergenic |
| CAAGTCTTCTGCTCAGACAT+TGG | 0.485895 | 7_3:+35170741 | Msa1102360:CDS |
| GACTTGGCATTATCAAAGTC+AGG | 0.493047 | 7_3:-35170724 | None:intergenic |
| CAATGTCTGAGCAGAAGACT+TGG | 0.496767 | 7_3:-35170740 | None:intergenic |
| GGTAGCAAACTATGCACAAA+TGG | 0.504062 | 7_3:+35170338 | Msa1102360:CDS |
| AGGAAAACTATTGCTATCCT+TGG | 0.507090 | 7_3:+35170500 | Msa1102360:CDS |
| GGTCGTAAAATATATTCCTC+AGG | 0.510399 | 7_3:+35169810 | Msa1102360:CDS |
| AAGTGATCTTAAACTTTCGC+AGG | 0.514012 | 7_3:+35167045 | Msa1102360:CDS |
| TGCACAATCATCATTGGCTA+TGG | 0.522187 | 7_3:+35169639 | Msa1102360:CDS |
| CAACAATATAGAGATAAATA+CGG | 0.539767 | 7_3:+35167272 | Msa1102360:CDS |
| CAGGATATAACACATAATGT+TGG | 0.552953 | 7_3:-35170675 | None:intergenic |
| GCTATGCAATCCATTGATCA+AGG | 0.566651 | 7_3:+35170360 | Msa1102360:CDS |
| AGATAAATACGGCCAGAAAG+AGG | 0.569324 | 7_3:+35167283 | Msa1102360:CDS |
| GCAACATCATTTGCTGCCAC+AGG | 0.569606 | 7_3:-35169371 | None:intergenic |
| GCTTCATAAGAGACATGAAG+TGG | 0.576703 | 7_3:-35166975 | None:intergenic |
| TATCATTCAAGTTTCTATGA+CGG | 0.577201 | 7_3:+35169789 | Msa1102360:CDS |
| CATAATGTTGGATGATGAAG+AGG | 0.579723 | 7_3:-35170663 | None:intergenic |
| CGAAAGTTTAAGATCACTTG+AGG | 0.587893 | 7_3:-35167041 | None:intergenic |
| TCTCTTATGAAGCTTTAGGG+TGG | 0.598428 | 7_3:+35166985 | Msa1102360:CDS |
| CTGCTGTTAGTAGCACTGCA+TGG | 0.608153 | 7_3:-35169403 | None:intergenic |
| AAAGTATCTAAAATTGCTTG+TGG | 0.608644 | 7_3:+35169566 | Msa1102360:CDS |
| GTGGAATAGTCACTGTTGCA+TGG | 0.616465 | 7_3:+35169585 | Msa1102360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATCATAAAAACAA+TGG | - | chr7_3:35167106-35167125 | None:intergenic | 10.0% |
| !! | AATAAATATATTGAATTGAA+TGG | - | chr7_3:35167328-35167347 | None:intergenic | 10.0% |
| !!! | TTATCATTTTAAAATTTTTG+AGG | + | chr7_3:35168032-35168051 | Msa1102360:intron | 10.0% |
| !! | AAAAAAAAAACATAAAAAAG+AGG | - | chr7_3:35168868-35168887 | None:intergenic | 10.0% |
| !!! | TCTTTTTTATGTTTTTTTTT+TGG | + | chr7_3:35168867-35168886 | Msa1102360:intron | 10.0% |
| !!! | CTTTTTTATGTTTTTTTTTT+GGG | + | chr7_3:35168868-35168887 | Msa1102360:intron | 10.0% |
| !! | CTTTATAACATTATATAAAA+AGG | - | chr7_3:35170841-35170860 | None:intergenic | 10.0% |
| !! | CAATTTAACATGAATAATAA+AGG | - | chr7_3:35167353-35167372 | None:intergenic | 15.0% |
| !! | AAAAACATTAAACTATCATA+TGG | + | chr7_3:35167658-35167677 | Msa1102360:intron | 15.0% |
| !!! | AGTAATTTTTTCTTGTAAAT+AGG | - | chr7_3:35167840-35167859 | None:intergenic | 15.0% |
| !!! | TACAAGAAAAAATTACTTTT+TGG | + | chr7_3:35167843-35167862 | Msa1102360:intron | 15.0% |
| !!! | TTGTTTCTTATAAATAAGAT+CGG | + | chr7_3:35167942-35167961 | Msa1102360:intron | 15.0% |
| !! | TATCAAAAAGATAGTTAAAT+AGG | - | chr7_3:35168198-35168217 | None:intergenic | 15.0% |
| !! | TAATTGTTAAAAATTTCAAG+TGG | + | chr7_3:35168375-35168394 | Msa1102360:intron | 15.0% |
| !! | GCAAAAAAATATGAATTTAT+TGG | + | chr7_3:35168586-35168605 | Msa1102360:intron | 15.0% |
| !! | AAAAAATATGAATTTATTGG+TGG | + | chr7_3:35168589-35168608 | Msa1102360:intron | 15.0% |
| !! | TATAAAAAAGACACTTAAAA+AGG | + | chr7_3:35168677-35168696 | Msa1102360:intron | 15.0% |
| !! | AAATATAGTAAATATTGCAT+TGG | + | chr7_3:35168924-35168943 | Msa1102360:intron | 15.0% |
| !! | TTATACATGAACAAAAATAA+GGG | - | chr7_3:35169303-35169322 | None:intergenic | 15.0% |
| !! | TTTATACATGAACAAAAATA+AGG | - | chr7_3:35169304-35169323 | None:intergenic | 15.0% |
| !! | AGAATAAAAATTAAGCTAAA+TGG | - | chr7_3:35169478-35169497 | None:intergenic | 15.0% |
| !!! | TGTTTTGTATTAATATATGT+CGG | + | chr7_3:35170790-35170809 | Msa1102360:three_prime_UTR | 15.0% |
| !! | ATATCATAAAAACAATGGTA+AGG | - | chr7_3:35167101-35167120 | None:intergenic | 20.0% |
| !! | CAACAATATAGAGATAAATA+CGG | + | chr7_3:35167272-35167291 | Msa1102360:CDS | 20.0% |
| !!! | TCCTTTTTAAATGTCTTTTT+AGG | + | chr7_3:35168159-35168178 | Msa1102360:intron | 20.0% |
| !!! | CCTTTTTAAATGTCTTTTTA+GGG | + | chr7_3:35168160-35168179 | Msa1102360:intron | 20.0% |
| !!! | CTTTTTAAATGTCTTTTTAG+GGG | + | chr7_3:35168161-35168180 | Msa1102360:intron | 20.0% |
| !!! | CAAAATTTTGTTACAAACAA+TGG | + | chr7_3:35168325-35168344 | Msa1102360:intron | 20.0% |
| !!! | TTTATTGGTGGATTAAAATA+AGG | + | chr7_3:35168601-35168620 | Msa1102360:intron | 20.0% |
| !! | GGATTAAAATAAGGTATAAT+AGG | + | chr7_3:35168610-35168629 | Msa1102360:intron | 20.0% |
| !! | AAAAATACACATCGTTAATT+TGG | + | chr7_3:35168645-35168664 | Msa1102360:intron | 20.0% |
| !! | AAAATTAAGCTAAATGGTAA+AGG | - | chr7_3:35169472-35169491 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTTGATGCATTA+TGG | + | chr7_3:35169708-35169727 | Msa1102360:intron | 20.0% |
| !! | TAAAAAGGATAAACTACAAA+TGG | - | chr7_3:35170826-35170845 | None:intergenic | 20.0% |
| !!! | TTTGTTGGTCAATTAGTTTT+TGG | + | chr7_3:35167018-35167037 | Msa1102360:CDS | 25.0% |
| !! | TTTTGTATACACTCGTAATT+TGG | + | chr7_3:35167411-35167430 | Msa1102360:intron | 25.0% |
| ! | AATAAGAAAATGACGTGTTA+CGG | + | chr7_3:35167719-35167738 | Msa1102360:intron | 25.0% |
| ! | GTTGAATGGGATTAATTAAA+AGG | + | chr7_3:35167768-35167787 | Msa1102360:intron | 25.0% |
| ! | TTCTTGTAAATAGGATATCA+GGG | - | chr7_3:35167831-35167850 | None:intergenic | 25.0% |
| ! | TTTCTTGTAAATAGGATATC+AGG | - | chr7_3:35167832-35167851 | None:intergenic | 25.0% |
| ! | TTTCTTATAAATAAGATCGG+AGG | + | chr7_3:35167945-35167964 | Msa1102360:intron | 25.0% |
| ! | TTCTTATAAATAAGATCGGA+GGG | + | chr7_3:35167946-35167965 | Msa1102360:intron | 25.0% |
| ! | CCCTAAAAAGACATTTAAAA+AGG | - | chr7_3:35168163-35168182 | None:intergenic | 25.0% |
| ! | ACATAAGAGTAATTGACAAA+TGG | - | chr7_3:35168232-35168251 | None:intergenic | 25.0% |
| !!! | ACTTATCTTTTAACTCTTCT+TGG | - | chr7_3:35168353-35168372 | None:intergenic | 25.0% |
| !!! | AAAGACAATTGTTTGTTATG+AGG | + | chr7_3:35168459-35168478 | Msa1102360:intron | 25.0% |
| !!! | AAGACAATTGTTTGTTATGA+GGG | + | chr7_3:35168460-35168479 | Msa1102360:intron | 25.0% |
| !! | TAGTCTTTAGTTCATGTTAA+AGG | + | chr7_3:35168768-35168787 | Msa1102360:intron | 25.0% |
| !! | AGTCTTTAGTTCATGTTAAA+GGG | + | chr7_3:35168769-35168788 | Msa1102360:intron | 25.0% |
| ! | ACTGGTTAAGAAAACTAAAA+AGG | - | chr7_3:35169008-35169027 | None:intergenic | 25.0% |
| ! | GTTAAACATTTCATTAGCTA+TGG | + | chr7_3:35169253-35169272 | Msa1102360:intron | 25.0% |
| ! | TAACATCATAGATTGCAATT+TGG | - | chr7_3:35169439-35169458 | None:intergenic | 25.0% |
| !! | AAGCAATTTTAGATACTTTC+TGG | - | chr7_3:35169565-35169584 | None:intergenic | 25.0% |
| !! | AAAGTATCTAAAATTGCTTG+TGG | + | chr7_3:35169566-35169585 | Msa1102360:CDS | 25.0% |
| ! | AATGCATCAAAATTCAAAAG+TGG | - | chr7_3:35169707-35169726 | None:intergenic | 25.0% |
| !! | TTTTGATGCATTATGGTTTA+TGG | + | chr7_3:35169715-35169734 | Msa1102360:intron | 25.0% |
| !! | TATCATTCAAGTTTCTATGA+CGG | + | chr7_3:35169789-35169808 | Msa1102360:CDS | 25.0% |
| ! | ACCAATTATGTTGTGAAAAT+AGG | + | chr7_3:35170242-35170261 | Msa1102360:intron | 25.0% |
| ! | AATTATGTTGTGAAAATAGG+CGG | + | chr7_3:35170245-35170264 | Msa1102360:intron | 25.0% |
| !! | TTTAAAATCACGTTTCTTCA+AGG | - | chr7_3:35170432-35170451 | None:intergenic | 25.0% |
| !!! | AAATTCCATCTTTGTTTTTC+AGG | + | chr7_3:35170450-35170469 | Msa1102360:intron | 25.0% |
| !! | GTGAACTTTTATGGAAATAT+AGG | + | chr7_3:35170480-35170499 | Msa1102360:CDS | 25.0% |
| ! | GAACTATATTTGAGAATTGA+GGG | - | chr7_3:35170884-35170903 | None:intergenic | 25.0% |
| ! | AGAACTATATTTGAGAATTG+AGG | - | chr7_3:35170885-35170904 | None:intergenic | 25.0% |
| ATGTCTCTTATGAAGCTTTA+GGG | + | chr7_3:35166982-35167001 | Msa1102360:CDS | 30.0% | |
| !!! | AATGGTAAGGTATTGTTTTC+TGG | - | chr7_3:35167088-35167107 | None:intergenic | 30.0% |
| ! | GTTTTTGTGTTTGATTAGTG+TGG | + | chr7_3:35167154-35167173 | Msa1102360:intron | 30.0% |
| AAAATTCACAAACCTCTTTC+TGG | - | chr7_3:35167298-35167317 | None:intergenic | 30.0% | |
| ! | GCACAAACACTTGTTAAATT+AGG | + | chr7_3:35167447-35167466 | Msa1102360:intron | 30.0% |
| !! | GACTTTTGTGAAAGTGTAAA+TGG | - | chr7_3:35167684-35167703 | None:intergenic | 30.0% |
| !! | GTAATAAATAGGCGTTGAAT+GGG | + | chr7_3:35167755-35167774 | Msa1102360:intron | 30.0% |
| TAAATAGGATATCAGGGATA+AGG | - | chr7_3:35167825-35167844 | None:intergenic | 30.0% | |
| AGCGTAAATTTAATAGTGTG+AGG | + | chr7_3:35168127-35168146 | Msa1102360:intron | 30.0% | |
| GTAAATTTAATAGTGTGAGG+AGG | + | chr7_3:35168130-35168149 | Msa1102360:intron | 30.0% | |
| TCACAGTAACAAACAATTGT+CGG | - | chr7_3:35168533-35168552 | None:intergenic | 30.0% | |
| !!! | AGACTTTTTTGTTGTATCTG+AGG | + | chr7_3:35168745-35168764 | Msa1102360:intron | 30.0% |
| ATGACTTGAGGTCTAAAAAT+TGG | - | chr7_3:35168836-35168855 | None:intergenic | 30.0% | |
| TGGGACACTTTAAACAAAAA+GGG | - | chr7_3:35169055-35169074 | None:intergenic | 30.0% | |
| TTGGGACACTTTAAACAAAA+AGG | - | chr7_3:35169056-35169075 | None:intergenic | 30.0% | |
| ! | TTTGTTTAAAGTGTCCCAAT+AGG | + | chr7_3:35169057-35169076 | Msa1102360:intron | 30.0% |
| TCTCAATTCTCAAACAATGT+AGG | + | chr7_3:35169120-35169139 | Msa1102360:intron | 30.0% | |
| ! | CAAACAATGTAGGACTTTTT+AGG | + | chr7_3:35169130-35169149 | Msa1102360:intron | 30.0% |
| !! | TCAATTTCTGAAATGCATGA+TGG | - | chr7_3:35169280-35169299 | None:intergenic | 30.0% |
| TTAAAATCGATACTAACCTG+AGG | - | chr7_3:35169829-35169848 | None:intergenic | 30.0% | |
| ! | CATTGAGTTTTGCAGAATTA+TGG | + | chr7_3:35170067-35170086 | Msa1102360:intron | 30.0% |
| TAATGAGTTCGACAAAATCA+TGG | - | chr7_3:35170151-35170170 | None:intergenic | 30.0% | |
| GCTAACTTCAGAACAAAAAA+TGG | - | chr7_3:35170211-35170230 | None:intergenic | 30.0% | |
| ACATAATTGGTTAAGATGGA+TGG | - | chr7_3:35170233-35170252 | None:intergenic | 30.0% | |
| CACAACATAATTGGTTAAGA+TGG | - | chr7_3:35170237-35170256 | None:intergenic | 30.0% | |
| ! | GCCTATTTTCACAACATAAT+TGG | - | chr7_3:35170246-35170265 | None:intergenic | 30.0% |
| !! | TTCATGAGAAAAAGTACTGA+TGG | + | chr7_3:35170276-35170295 | Msa1102360:CDS | 30.0% |
| ATATTAGTGACCTTGATCAA+TGG | - | chr7_3:35170373-35170392 | None:intergenic | 30.0% | |
| AAGAACCTGAAAAACAAAGA+TGG | - | chr7_3:35170458-35170477 | None:intergenic | 30.0% | |
| !!! | ATCTTTGTTTTTCAGGTTCT+TGG | + | chr7_3:35170457-35170476 | Msa1102360:intron | 30.0% |
| !!! | TCTTTGTTTTTCAGGTTCTT+GGG | + | chr7_3:35170458-35170477 | Msa1102360:intron | 30.0% |
| CAGGATATAACACATAATGT+TGG | - | chr7_3:35170678-35170697 | None:intergenic | 30.0% | |
| !! | TCTAATTTGCGTTTTCTTTC+AGG | - | chr7_3:35170697-35170716 | None:intergenic | 30.0% |
| AGAAATCGATCATGTCTTCT+TGG | + | chr7_3:35166943-35166962 | Msa1102360:exon | 35.0% | |
| CATGTCTCTTATGAAGCTTT+AGG | + | chr7_3:35166981-35167000 | Msa1102360:CDS | 35.0% | |
| ! | CGAAAGTTTAAGATCACTTG+AGG | - | chr7_3:35167044-35167063 | None:intergenic | 35.0% |
| AAGTGATCTTAAACTTTCGC+AGG | + | chr7_3:35167045-35167064 | Msa1102360:CDS | 35.0% | |
| TCTTAAACTTTCGCAGGAAA+AGG | + | chr7_3:35167051-35167070 | Msa1102360:CDS | 35.0% | |
| TTGTGTTTGATTAGTGTGGT+TGG | + | chr7_3:35167158-35167177 | Msa1102360:intron | 35.0% | |
| ! | AGGAAGGAAGCGTAATAAAT+AGG | + | chr7_3:35167744-35167763 | Msa1102360:intron | 35.0% |
| !! | CGTAATAAATAGGCGTTGAA+TGG | + | chr7_3:35167754-35167773 | Msa1102360:intron | 35.0% |
| AGACACTTAAAAAGGAACGA+AGG | + | chr7_3:35168685-35168704 | Msa1102360:intron | 35.0% | |
| AGTTCATGTTAAAGGGCTAA+AGG | + | chr7_3:35168776-35168795 | Msa1102360:intron | 35.0% | |
| AGGTCTTTGAATATGACTTG+AGG | - | chr7_3:35168848-35168867 | None:intergenic | 35.0% | |
| !! | TTTTGGGAAATGTTAACCAG+TGG | + | chr7_3:35168884-35168903 | Msa1102360:intron | 35.0% |
| TTTGGGAAATGTTAACCAGT+GGG | + | chr7_3:35168885-35168904 | Msa1102360:intron | 35.0% | |
| !! | ACAAAAAGGGTCTTGTTAAC+CGG | - | chr7_3:35169042-35169061 | None:intergenic | 35.0% |
| !!! | TCGATTATTTTTATGCAGCG+TGG | + | chr7_3:35169536-35169555 | Msa1102360:intron | 35.0% |
| TTGCATTGCACAATCATCAT+TGG | + | chr7_3:35169633-35169652 | Msa1102360:CDS | 35.0% | |
| !!! | GGTTTATGGAAGCTTTGTTT+TGG | + | chr7_3:35169729-35169748 | Msa1102360:intron | 35.0% |
| GGTCGTAAAATATATTCCTC+AGG | + | chr7_3:35169810-35169829 | Msa1102360:CDS | 35.0% | |
| ATCCAACAATGATACATGTC+AGG | - | chr7_3:35169922-35169941 | None:intergenic | 35.0% | |
| !! | TGAGAAAAAGTACTGATGGA+TGG | + | chr7_3:35170280-35170299 | Msa1102360:CDS | 35.0% |
| ! | AACATTCTACTGGACTTTTC+TGG | + | chr7_3:35170312-35170331 | Msa1102360:CDS | 35.0% |
| AGGAAAACTATTGCTATCCT+TGG | + | chr7_3:35170500-35170519 | Msa1102360:CDS | 35.0% | |
| TGATACACTGTTACATACCA+AGG | - | chr7_3:35170520-35170539 | None:intergenic | 35.0% | |
| ! | TCGCATTCTTTTAACATTGC+AGG | + | chr7_3:35170621-35170640 | Msa1102360:intron | 35.0% |
| CATAATGTTGGATGATGAAG+AGG | - | chr7_3:35170666-35170685 | None:intergenic | 35.0% | |
| GCTTCATAAGAGACATGAAG+TGG | - | chr7_3:35166978-35166997 | None:intergenic | 40.0% | |
| !! | TCTCTTATGAAGCTTTAGGG+TGG | + | chr7_3:35166985-35167004 | Msa1102360:CDS | 40.0% |
| !!! | GGTGGTTTGCTTTTGTTTGT+TGG | + | chr7_3:35167003-35167022 | Msa1102360:CDS | 40.0% |
| AGATAAATACGGCCAGAAAG+AGG | + | chr7_3:35167283-35167302 | Msa1102360:CDS | 40.0% | |
| TAATTACAAGTGCCCGACAT+CGG | - | chr7_3:35167479-35167498 | None:intergenic | 40.0% | |
| GTGCTTATCGAAAAGATGTG+CGG | + | chr7_3:35167618-35167637 | Msa1102360:intron | 40.0% | |
| GAAAATGACGTGTTACGGTT+AGG | + | chr7_3:35167724-35167743 | Msa1102360:intron | 40.0% | |
| TTGCACTTTCTCGACCTATT+GGG | - | chr7_3:35169074-35169093 | None:intergenic | 40.0% | |
| ! | TCTTTTGCAGATGATACCTG+TGG | + | chr7_3:35169355-35169374 | Msa1102360:intron | 40.0% |
| ! | TGCACAATCATCATTGGCTA+TGG | + | chr7_3:35169639-35169658 | Msa1102360:CDS | 40.0% |
| TGCCTGACATGTATCATTGT+TGG | + | chr7_3:35169917-35169936 | Msa1102360:intron | 40.0% | |
| TGAGTTCGACAAAATCATGG+TGG | - | chr7_3:35170148-35170167 | None:intergenic | 40.0% | |
| ! | GAGCATTTGGAACATTCTAC+TGG | + | chr7_3:35170302-35170321 | Msa1102360:CDS | 40.0% |
| ! | ATTCTACTGGACTTTTCTGG+AGG | + | chr7_3:35170315-35170334 | Msa1102360:CDS | 40.0% |
| ! | TTCTACTGGACTTTTCTGGA+GGG | + | chr7_3:35170316-35170335 | Msa1102360:CDS | 40.0% |
| GGTAGCAAACTATGCACAAA+TGG | + | chr7_3:35170338-35170357 | Msa1102360:CDS | 40.0% | |
| GCTATGCAATCCATTGATCA+AGG | + | chr7_3:35170360-35170379 | Msa1102360:CDS | 40.0% | |
| ! | GGTTCTTGGGTGAACTTTTA+TGG | + | chr7_3:35170471-35170490 | Msa1102360:intron | 40.0% |
| GACTTGGCATTATCAAAGTC+AGG | - | chr7_3:35170727-35170746 | None:intergenic | 40.0% | |
| AATTAGGCGTGTTCCGATGT+CGG | + | chr7_3:35167463-35167482 | Msa1102360:intron | 45.0% | |
| TGCTATGTGAAGCACATGCA+CGG | - | chr7_3:35167577-35167596 | None:intergenic | 45.0% | |
| ATGACGTGTTACGGTTAGGA+AGG | + | chr7_3:35167728-35167747 | Msa1102360:intron | 45.0% | |
| GGAGCGCACGCAAAAAAAAA+AGG | + | chr7_3:35168481-35168500 | Msa1102360:intron | 45.0% | |
| AAAGGAACTTGTGTGTGGCT+TGG | + | chr7_3:35168794-35168813 | Msa1102360:intron | 45.0% | |
| AAATGTTAACCAGTGGGCAC+TGG | + | chr7_3:35168891-35168910 | Msa1102360:intron | 45.0% | |
| ! | AGTTTTCTTAACCAGTGCCC+CGG | + | chr7_3:35169012-35169031 | Msa1102360:intron | 45.0% |
| CTTGCACTTTCTCGACCTAT+TGG | - | chr7_3:35169075-35169094 | None:intergenic | 45.0% | |
| GTGGAATAGTCACTGTTGCA+TGG | + | chr7_3:35169585-35169604 | Msa1102360:CDS | 45.0% | |
| ! | GTACTGATGGATGGAGCATT+TGG | + | chr7_3:35170289-35170308 | Msa1102360:CDS | 45.0% |
| !! | TCTACTGGACTTTTCTGGAG+GGG | + | chr7_3:35170317-35170336 | Msa1102360:CDS | 45.0% |
| CAATGTCTGAGCAGAAGACT+TGG | - | chr7_3:35170743-35170762 | None:intergenic | 45.0% | |
| CAAGTCTTCTGCTCAGACAT+TGG | + | chr7_3:35170741-35170760 | Msa1102360:CDS | 45.0% | |
| !! | AAAATAAAATATAATTACTA+AGG | - | chr7_3:35167994-35168013 | None:intergenic | 5.0% |
| !! | AAATTAAAAGTAAAAAAAAA+AGG | + | chr7_3:35168072-35168091 | Msa1102360:intron | 5.0% |
| !! | AAAAATAACATTAAATTTAT+TGG | + | chr7_3:35168555-35168574 | Msa1102360:intron | 5.0% |
| ATTAGGCGTGTTCCGATGTC+GGG | + | chr7_3:35167464-35167483 | Msa1102360:intron | 50.0% | |
| GGGCTAAAGGAACTTGTGTG+TGG | + | chr7_3:35168789-35168808 | Msa1102360:intron | 50.0% | |
| !! | TAACCAGTGGGCACTGGATA+AGG | + | chr7_3:35168897-35168916 | Msa1102360:intron | 50.0% |
| ATTCCTTATCCAGTGCCCAC+TGG | - | chr7_3:35168903-35168922 | None:intergenic | 50.0% | |
| ! | GTTTTCTTAACCAGTGCCCC+GGG | + | chr7_3:35169013-35169032 | Msa1102360:intron | 50.0% |
| ! | TTTTCTTAACCAGTGCCCCG+GGG | + | chr7_3:35169014-35169033 | Msa1102360:intron | 50.0% |
| ! | GCAACATCATTTGCTGCCAC+AGG | - | chr7_3:35169374-35169393 | None:intergenic | 50.0% |
| CTGCTGTTAGTAGCACTGCA+TGG | - | chr7_3:35169406-35169425 | None:intergenic | 50.0% | |
| ACATGCACGGACACGGATAC+TGG | - | chr7_3:35167564-35167583 | None:intergenic | 55.0% | |
| GTGAAGCACATGCACGGACA+CGG | - | chr7_3:35167571-35167590 | None:intergenic | 55.0% | |
| TCTTGTTAACCGGTGCCCCG+GGG | - | chr7_3:35169032-35169051 | None:intergenic | 60.0% | |
| ! | GTCTTGTTAACCGGTGCCCC+GGG | - | chr7_3:35169033-35169052 | None:intergenic | 60.0% |
| !! | GGTCTTGTTAACCGGTGCCC+CGG | - | chr7_3:35169034-35169053 | None:intergenic | 60.0% |
| TAACCAGTGCCCCGGGGCAC+CGG | + | chr7_3:35169020-35169039 | Msa1102360:intron | 70.0% | |
| TAACCGGTGCCCCGGGGCAC+TGG | - | chr7_3:35169026-35169045 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 35166930 | 35170910 | 35166930 | ID=Msa1102360;Name=Msa1102360 |
| chr7_3 | mRNA | 35166930 | 35170910 | 35166930 | ID=Msa1102360-mRNA-1;Parent=Msa1102360;Name=Msa1102360-mRNA-1;_AED=0.14;_eAED=0.14;_QI=24|1|1|1|1|1|8|133|270 |
| chr7_3 | exon | 35166930 | 35167072 | 35166930 | ID=Msa1102360-mRNA-1:exon:7401;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35167172 | 35167304 | 35167172 | ID=Msa1102360-mRNA-1:exon:7402;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35169365 | 35169454 | 35169365 | ID=Msa1102360-mRNA-1:exon:7403;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35169554 | 35169678 | 35169554 | ID=Msa1102360-mRNA-1:exon:7404;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35169789 | 35169831 | 35169789 | ID=Msa1102360-mRNA-1:exon:7405;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35170264 | 35170381 | 35170264 | ID=Msa1102360-mRNA-1:exon:7406;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35170472 | 35170521 | 35170472 | ID=Msa1102360-mRNA-1:exon:7407;Parent=Msa1102360-mRNA-1 |
| chr7_3 | exon | 35170643 | 35170910 | 35170643 | ID=Msa1102360-mRNA-1:exon:7408;Parent=Msa1102360-mRNA-1 |
| chr7_3 | five_prime_UTR | 35166930 | 35166953 | 35166930 | ID=Msa1102360-mRNA-1:five_prime_utr;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35166954 | 35167072 | 35166954 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35167172 | 35167304 | 35167172 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35169365 | 35169454 | 35169365 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35169554 | 35169678 | 35169554 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35169789 | 35169831 | 35169789 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35170264 | 35170381 | 35170264 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35170472 | 35170521 | 35170472 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | CDS | 35170643 | 35170777 | 35170643 | ID=Msa1102360-mRNA-1:cds;Parent=Msa1102360-mRNA-1 |
| chr7_3 | three_prime_UTR | 35170778 | 35170910 | 35170778 | ID=Msa1102360-mRNA-1:three_prime_utr;Parent=Msa1102360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
