AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604290 MtrunA17_Chr4g0033361 98.801 584 7 0 1 584 1 584 0.0 1215
Msa0604290 MtrunA17_Chr2g0329221 80.268 598 102 4 1 584 1 596 0.0 967
Msa0604290 MtrunA17_Chr3g0110331 71.160 586 153 6 1 582 1 574 0.0 840
Msa0604290 MtrunA17_Chr3g0110341 69.244 582 149 5 1 582 30 581 0.0 792
Msa0604290 MtrunA17_Chr5g0447801 83.746 283 46 0 254 536 3 285 5.84e-177 502
Msa0604290 MtrunA17_Chr4g0038181 41.841 478 233 9 57 519 2 449 4.14e-128 383
Msa0604290 MtrunA17_Chr4g0034371 29.423 537 336 13 18 529 2 520 5.12e-65 222
Msa0604290 MtrunA17_Chr4g0038201 36.438 365 164 11 38 395 10 313 6.25e-61 205
Msa0604290 MtrunA17_Chr4g0038191 56.667 90 38 1 430 519 2 90 1.62e-26 104
Msa0604290 MtrunA17_Chr5g0434721 25.229 218 121 6 117 329 134 314 3.88e-15 77.0
Msa0604290 MtrunA17_Chr3g0103961 24.359 234 166 7 102 329 20 248 1.21e-13 71.2
Msa0604290 MtrunA17_Chr3g0103941 24.123 228 152 9 124 343 33 247 1.09e-12 68.6
Msa0604290 MtrunA17_Chr2g0301841 25.743 202 140 6 129 325 88 284 5.13e-12 67.0
Msa0604290 MtrunA17_Chr4g0029991 26.190 210 135 7 136 331 306 509 1.33e-11 67.4
Msa0604290 MtrunA17_Chr3g0103931 24.402 209 146 7 127 330 43 244 1.65e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604290 AT2G31510.1 72.887 568 138 5 1 559 1 561 0.0 847
Msa0604290 AT1G65430.1 69.338 574 159 4 18 584 4 567 0.0 823
Msa0604290 AT2G31510.3 76.892 489 109 2 74 559 2 489 0.0 792
Msa0604290 AT2G31510.2 74.206 504 118 3 1 498 1 498 0.0 792
Msa0604290 AT1G05890.1 70.385 520 138 4 20 533 16 525 0.0 768
Msa0604290 AT1G05890.2 73.684 475 122 2 59 533 96 567 0.0 754
Msa0604290 AT2G31770.1 56.673 517 195 8 16 522 3 500 0.0 599
Msa0604290 AT2G31760.1 59.140 465 171 6 57 519 40 487 0.0 582
Msa0604290 AT2G31780.1 55.677 458 179 8 1 451 1 441 0.0 520
Msa0604290 AT1G05880.2 39.407 472 253 8 61 523 40 487 8.61e-108 333
Msa0604290 AT1G05880.1 39.195 472 247 10 61 523 40 480 2.53e-103 321
Msa0604290 AT1G05880.3 38.546 454 246 8 61 505 40 469 2.07e-97 305
Msa0604290 AT4G34370.1 30.490 551 330 18 19 535 2 533 9.14e-68 231
Msa0604290 AT2G16090.1 29.744 585 341 18 19 559 2 560 8.44e-64 220
Msa0604290 AT2G16090.4 29.188 579 346 16 19 559 2 554 1.11e-62 217
Msa0604290 AT2G16090.3 30.286 525 313 15 19 516 2 500 1.59e-62 216
Msa0604290 AT3G27710.1 29.412 476 294 14 62 516 45 499 5.55e-59 206
Msa0604290 AT2G16090.2 29.865 519 302 15 82 559 3 500 1.27e-58 205
Msa0604290 AT5G63750.1 29.541 501 297 15 57 519 6 488 2.38e-58 204
Msa0604290 AT2G16090.5 30.501 459 274 12 82 516 3 440 2.60e-57 200
Msa0604290 AT5G08730.1 27.484 473 307 10 58 523 6 449 4.51e-56 197
Msa0604290 AT5G63730.1 27.190 548 315 18 52 580 4 486 2.79e-50 181
Msa0604290 AT4G34370.2 33.333 378 207 14 187 535 5 366 9.70e-48 172
Msa0604290 AT3G27720.1 32.047 337 190 10 199 516 143 459 8.48e-43 160
Msa0604290 AT5G63760.1 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0604290 AT5G63760.3 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0604290 AT5G63760.2 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0604290 AT5G63760.4 28.021 389 207 15 208 580 2 333 1.16e-33 131
Msa0604290 AT5G10370.1 26.693 251 170 9 87 330 1512 1755 7.18e-12 69.3
Msa0604290 AT2G26135.1 26.291 213 139 8 121 325 140 342 1.89e-11 66.6
Msa0604290 AT3G45580.1 29.469 207 124 10 136 329 172 369 2.26e-11 66.6

Find 166 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAGTCCATTGAAGAATT+TGG 0.153603 4_2:-49759814 None:intergenic
CCAGCAAAATTCAAATTTAC+AGG 0.232442 4_2:-49763215 None:intergenic
ATCGACGTTGATTGCAAATC+TGG 0.244897 4_2:-49766835 None:intergenic
GAATCTAGGGCTTGAGAAAT+TGG 0.246818 4_2:-49759779 None:intergenic
AAGGAATAGAAGTTGAAAAT+TGG 0.256098 4_2:-49759657 None:intergenic
CAAGCCCTAGATTCTCGATT+TGG 0.256493 4_2:+49759788 Msa0604290:five_prime_UTR
TCTTCATCGTCTTCACATAT+TGG 0.270709 4_2:-49766950 None:intergenic
TTCGATTGGTCGCTTGCATT+TGG 0.271459 4_2:-49763155 None:intergenic
TCCTTTCTTCTTTCCTTTCA+CGG 0.296568 4_2:+49759675 Msa0604290:five_prime_UTR
GAATTATATACCATATCATT+TGG 0.302570 4_2:+49767212 Msa0604290:three_prime_UTR
GATATCAGATTCCTTCAATA+TGG 0.313478 4_2:-49760732 None:intergenic
TATCTCACCTCGCTAGTATT+AGG 0.330743 4_2:-49761451 None:intergenic
TGGCCCACCGCTCATAATAA+TGG 0.335297 4_2:-49763828 None:intergenic
CCCACTTGTGGCGCTGCTAT+TGG 0.344918 4_2:+49761989 Msa0604290:CDS
GGGAGCAGTAAGGGGAGAGC+TGG 0.349500 4_2:+49766713 Msa0604290:CDS
AGTCATTGAATTCTTTAGAT+TGG 0.359218 4_2:-49766460 None:intergenic
TCGATTGGTCGCTTGCATTT+GGG 0.365336 4_2:-49763154 None:intergenic
ATTACAAATCCCAAATGATA+TGG 0.368424 4_2:-49767222 None:intergenic
TGTCATCTTCCTGTCTTACT+TGG 0.369228 4_2:-49760754 None:intergenic
TTATATACACGAATATATCT+AGG 0.373577 4_2:-49767138 None:intergenic
GTCACAGCTTAAGTTTATTA+CGG 0.378239 4_2:+49765962 Msa0604290:CDS
CCGAAAAGCGGTTGGCTTGT+TGG 0.378590 4_2:+49761408 Msa0604290:CDS
CTATCTGATGTAGATGCTAA+TGG 0.382104 4_2:+49766650 Msa0604290:CDS
AATCTAGGGCTTGAGAAATT+GGG 0.384209 4_2:-49759778 None:intergenic
TATGCACGATGCTCACGATA+TGG 0.384878 4_2:+49759843 Msa0604290:CDS
TACTACTTCGTCACCACAAT+TGG 0.386991 4_2:+49760825 Msa0604290:CDS
GGGAGAGCTGGGAGAGGAAA+GGG 0.387635 4_2:+49766725 Msa0604290:CDS
CGTGTATATAAATAACCTTA+TGG 0.392253 4_2:+49767150 Msa0604290:three_prime_UTR
GGATCCCAAATCGAGAATCT+AGG 0.392687 4_2:-49759793 None:intergenic
TTATATCGAAGACAATAAAA+AGG 0.396653 4_2:+49762081 Msa0604290:CDS
AATTATATACCATATCATTT+GGG 0.399795 4_2:+49767213 Msa0604290:three_prime_UTR
ATCCATACTGTTTCTCATGC+TGG 0.403926 4_2:+49761646 Msa0604290:CDS
GTATTAGGATGCTGGACAAC+TGG 0.406004 4_2:-49761436 None:intergenic
AACTATCCTCGCTCTGGGAT+TGG 0.407143 4_2:+49761606 Msa0604290:CDS
AAGCCCTAGATTCTCGATTT+GGG 0.408853 4_2:+49759789 Msa0604290:five_prime_UTR
TATCTGATGTAGATGCTAAT+GGG 0.411020 4_2:+49766651 Msa0604290:CDS
GACTTTCGTACAAAATTAGC+TGG 0.416189 4_2:+49766479 Msa0604290:CDS
GCAGCGCCACAAGTGGGTTC+AGG 0.416212 4_2:-49761983 None:intergenic
TTGGGATCCAAATTCTTCAA+TGG 0.417203 4_2:+49759807 Msa0604290:exon
TCCCAGCATGAGAAACAGTA+TGG 0.418225 4_2:-49761648 None:intergenic
GGGTTCTTCTCATTATATGC+TGG 0.420860 4_2:+49766925 Msa0604290:three_prime_UTR
ACTGCACCAAAGGCTGAGAT+TGG 0.427723 4_2:+49766904 Msa0604290:three_prime_UTR
AACAAATTCAGCTGAGTGAT+AGG 0.433492 4_2:-49767004 None:intergenic
TTTGAAAACTATCCTCGCTC+TGG 0.436202 4_2:+49761600 Msa0604290:CDS
GGGGAGAGCTGGGAGAGGAA+AGG 0.438486 4_2:+49766724 Msa0604290:CDS
TTAGTGAGGGCTTTAGAGAA+TGG 0.439616 4_2:+49766626 Msa0604290:CDS
TATATAAATAACCTTATGGT+TGG 0.440179 4_2:+49767154 Msa0604290:three_prime_UTR
GGCCCACCGCTCATAATAAT+GGG 0.441437 4_2:-49763827 None:intergenic
CTGAAATGGACGTATGCATA+TGG 0.442573 4_2:+49766218 Msa0604290:CDS
AAGAACCCAATCTCAGCCTT+TGG 0.445930 4_2:-49766910 None:intergenic
TACTGAAAGAAGAAGGGAAA+TGG 0.451324 4_2:+49763780 Msa0604290:CDS
GGTCGCTTGCATTTGGGACA+TGG 0.453953 4_2:-49763148 None:intergenic
TGTAGAAATCGTCATCTTCA+AGG 0.456356 4_2:-49759870 None:intergenic
CACTGGACGATGAGCCTCCT+CGG 0.458483 4_2:-49762608 None:intergenic
TCCGTTAGAAACACTTGTTA+AGG 0.461348 4_2:+49766872 Msa0604290:three_prime_UTR
ATGATGATACTGAAAGAAGA+AGG 0.463836 4_2:+49763773 Msa0604290:CDS
GGAGCAGTAAGGGGAGAGCT+GGG 0.464600 4_2:+49766714 Msa0604290:CDS
ACATCCAGGACCATCATTGA+TGG 0.478158 4_2:-49761945 None:intergenic
AGCAGCTAAGCAAGAGGGAG+TGG 0.478756 4_2:+49763659 Msa0604290:CDS
TCCATACTGTTTCTCATGCT+GGG 0.479243 4_2:+49761647 Msa0604290:CDS
AGTGTAGGAGAGTGCTGAAA+TGG 0.479640 4_2:+49766204 Msa0604290:CDS
ATAAGATCTACGAAGGTAAC+GGG 0.483111 4_2:-49762062 None:intergenic
TCAAAGTGGTGTCCTGCCCC+TGG 0.492940 4_2:+49762405 Msa0604290:CDS
CAGAGTCTGAAAACATGAAC+TGG 0.493565 4_2:+49762671 Msa0604290:CDS
GATACATACAGATTGGTTGC+TGG 0.496836 4_2:-49763848 None:intergenic
ATCTGATATCCAAGTAAGAC+AGG 0.497385 4_2:+49760745 Msa0604290:CDS
AGGTGAAGCAGAATCTGGTC+TGG 0.499622 4_2:+49766382 Msa0604290:intron
TATTACGGAGGCCTGGCTGC+AGG 0.501896 4_2:+49765977 Msa0604290:CDS
TCAACAAGATAGTTGACAAA+AGG 0.502770 4_2:-49767246 None:intergenic
ACCAATAGCAGCGCCACAAG+TGG 0.504223 4_2:-49761990 None:intergenic
ATAAACTTAAGCTGTGACTC+AGG 0.505087 4_2:-49765957 None:intergenic
GGAAATGGCGAAGAATTCAT+TGG 0.506032 4_2:+49763795 Msa0604290:CDS
TACTGTTTCTCATGCTGGGA+AGG 0.514636 4_2:+49761651 Msa0604290:CDS
ATATAAATAACCTTATGGTT+GGG 0.517339 4_2:+49767155 Msa0604290:three_prime_UTR
TATCTACATAGGTTATGCCT+TGG 0.517708 4_2:+49763579 Msa0604290:intron
AAGTTGAAAATTGGAAGATA+AGG 0.517922 4_2:-49759648 None:intergenic
GAAATTGAATTTACCAATTG+TGG 0.519364 4_2:-49760838 None:intergenic
GTGCGTGGCCACTGCACCAA+AGG 0.519803 4_2:+49766894 Msa0604290:three_prime_UTR
AATCTCAGCCTTTGGTGCAG+TGG 0.521654 4_2:-49766902 None:intergenic
AAATGCTGCAGGGAGCAGTA+AGG 0.522523 4_2:+49766703 Msa0604290:CDS
CCTCGCTAGTATTAGGATGC+TGG 0.523850 4_2:-49761444 None:intergenic
AGCATCGTGCATATCATCTT+CGG 0.523950 4_2:-49759833 None:intergenic
CGATTTCTACAGTGGTGATA+CGG 0.524021 4_2:+49759882 Msa0604290:CDS
TTGAAAACTATCCTCGCTCT+GGG 0.528875 4_2:+49761601 Msa0604290:CDS
CTGCACCAAAGGCTGAGATT+GGG 0.530403 4_2:+49766905 Msa0604290:three_prime_UTR
ACCACAGTGCCACAGTCCAC+TGG 0.533681 4_2:-49762625 None:intergenic
TTAAGTTTATTACGGAGGCC+TGG 0.533852 4_2:+49765970 Msa0604290:CDS
TCCGTGAAAGGAAAGAAGAA+AGG 0.536977 4_2:-49759676 None:intergenic
GATCCCAAATCGAGAATCTA+GGG 0.539031 4_2:-49759792 None:intergenic
CAGCAATTCCTCAGTGCTGA+AGG 0.541611 4_2:+49766437 Msa0604290:CDS
CAAAATTAGCTGGATTGACT+AGG 0.541759 4_2:+49766489 Msa0604290:CDS
ACGTCCATCAATGATGGTCC+TGG 0.548432 4_2:+49761941 Msa0604290:CDS
TGAGCTCGTTGCTTTGCTGA+AGG 0.552429 4_2:-49766678 None:intergenic
ATCAGCACGTCCATCAATGA+TGG 0.552763 4_2:+49761935 Msa0604290:CDS
CAAATCATTTACCTGCAGCC+AGG 0.554241 4_2:-49765988 None:intergenic
ATAGGTTATGCCTTGGTGCA+TGG 0.554336 4_2:+49763586 Msa0604290:intron
TGATGATACTGAAAGAAGAA+GGG 0.556998 4_2:+49763774 Msa0604290:CDS
TACAGTGGTGATACGGAAGA+AGG 0.559004 4_2:+49759889 Msa0604290:CDS
GAAACACTTGTTAAGGTGCG+TGG 0.559118 4_2:+49766879 Msa0604290:three_prime_UTR
AATGCTGCAGGGAGCAGTAA+GGG 0.560155 4_2:+49766704 Msa0604290:CDS
ACTTAAGCTGTGACTCAGGT+TGG 0.561742 4_2:-49765953 None:intergenic
GAACTTCTGATGATAGTCAC+TGG 0.562651 4_2:+49766765 Msa0604290:CDS
CAGTTCTTTGAGTATTTGCA+AGG 0.563576 4_2:+49766275 Msa0604290:CDS
AATCAACGTCGATGAAAATG+TGG 0.565537 4_2:+49766845 Msa0604290:exon
CTACTTCGAGAATTTAGTGA+GGG 0.566132 4_2:+49766613 Msa0604290:CDS
AGTAAGGGGAGAGCTGGGAG+AGG 0.566304 4_2:+49766719 Msa0604290:CDS
TGCTGTGGCCAGCTTACATG+TGG 0.566414 4_2:+49761570 Msa0604290:intron
ATCTAGGGCTTGAGAAATTG+GGG 0.572034 4_2:-49759777 None:intergenic
TCTTCCAGATAGTTGAGTGT+AGG 0.573883 4_2:+49766189 Msa0604290:intron
GCATATTCACAACCAGGGGC+AGG 0.573937 4_2:-49762417 None:intergenic
CAGCAAAATTCAAATTTACA+GGG 0.574826 4_2:-49763214 None:intergenic
TGTTGTAACATAATAGATGC+TGG 0.575149 4_2:+49767060 Msa0604290:three_prime_UTR
TCAGACCATGGTGAAAGAAC+TGG 0.575256 4_2:+49763609 Msa0604290:CDS
GGGATTGGAATGGCTTCTTG+TGG 0.575363 4_2:+49761621 Msa0604290:CDS
AGTGATTATGATGATGATGC+TGG 0.577389 4_2:+49759928 Msa0604290:CDS
TCCTCGCTCTGGGATTGGAA+TGG 0.579366 4_2:+49761611 Msa0604290:CDS
GTAGAAATCGTCATCTTCAA+GGG 0.579796 4_2:-49759869 None:intergenic
AAATTCAGCTGAGTGATAGG+AGG 0.580861 4_2:-49767001 None:intergenic
ACTGTGGCACTGTGGTAAAG+TGG 0.587937 4_2:+49762632 Msa0604290:CDS
ACACCCATTATTATGAGCGG+TGG 0.591402 4_2:+49763824 Msa0604290:CDS
TATAAGATCTACGAAGGTAA+CGG 0.591928 4_2:-49762063 None:intergenic
GAGCGAGTCCGAAAAGCGGT+TGG 0.598853 4_2:+49761400 Msa0604290:CDS
CATCTCAACATCAAACATCC+AGG 0.599803 4_2:-49761959 None:intergenic
CCAATAGCAGCGCCACAAGT+GGG 0.601504 4_2:-49761989 None:intergenic
AATTCAGCTGAGTGATAGGA+GGG 0.602797 4_2:-49767000 None:intergenic
GTACTATTTACCTGAGCATG+AGG 0.605750 4_2:+49766241 Msa0604290:CDS
ATGCTGCAGGGAGCAGTAAG+GGG 0.605774 4_2:+49766705 Msa0604290:CDS
CACCCATTATTATGAGCGGT+GGG 0.609091 4_2:+49763825 Msa0604290:CDS
TGAAATGGACGTATGCATAT+GGG 0.610291 4_2:+49766219 Msa0604290:CDS
ACCTTAACAAGTGTTTCTAA+CGG 0.610291 4_2:-49766873 None:intergenic
ATGTGATGATGGTCCGTGAA+AGG 0.615803 4_2:-49759688 None:intergenic
AGATGTCCTGAACCCACTTG+TGG 0.620859 4_2:+49761977 Msa0604290:CDS
CAAAATTCAAATTTACAGGG+TGG 0.621414 4_2:-49763211 None:intergenic
TTATGAAGCAGCTAAGCAAG+AGG 0.623330 4_2:+49763653 Msa0604290:CDS
CGAGGAGGCTCATCGTCCAG+TGG 0.625879 4_2:+49762609 Msa0604290:CDS
ATCTGATGTAGATGCTAATG+GGG 0.630234 4_2:+49766652 Msa0604290:CDS
TGATACGGAAGAAGGTGCGA+TGG 0.632626 4_2:+49759897 Msa0604290:CDS
GAAGATGACGATTTCTACAG+TGG 0.633360 4_2:+49759874 Msa0604290:CDS
TATGAAGCAGCTAAGCAAGA+GGG 0.635282 4_2:+49763654 Msa0604290:CDS
TGAAGAGCGAGTCCGAAAAG+CGG 0.637498 4_2:+49761396 Msa0604290:CDS
ATCAACGTCGATGAAAATGT+GGG 0.639035 4_2:+49766846 Msa0604290:exon
GATTGAGTCTCGTCGACCTG+AGG 0.639074 4_2:+49759975 Msa0604290:CDS
GCCATTCCAATCCCAGAGCG+AGG 0.643551 4_2:-49761612 None:intergenic
GACCATGGTGAAAGAACTGG+TGG 0.643713 4_2:+49763612 Msa0604290:CDS
ACAGCTTAAGTTTATTACGG+AGG 0.646409 4_2:+49765965 Msa0604290:CDS
CTTCGATATAAGATCTACGA+AGG 0.648378 4_2:-49762069 None:intergenic
GCTCATCGTCCAGTGGACTG+TGG 0.650054 4_2:+49762616 Msa0604290:CDS
TACTATTTACCTGAGCATGA+GGG 0.652156 4_2:+49766242 Msa0604290:CDS
ACTACTTCGAGAATTTAGTG+AGG 0.655176 4_2:+49766612 Msa0604290:CDS
GTAACTGCATATTCACAACC+AGG 0.655441 4_2:-49762423 None:intergenic
AACAAAAGCTATACGAACAG+AGG 0.655471 4_2:-49762482 None:intergenic
AACTGCATATTCACAACCAG+GGG 0.659172 4_2:-49762421 None:intergenic
ATTGCAAATCTGGCATGTGG+TGG 0.660392 4_2:-49766825 None:intergenic
AACCACCAGTTCTTTCACCA+TGG 0.660461 4_2:-49763614 None:intergenic
TCAGTAAAGTGCATGATGCA+TGG 0.665829 4_2:+49761365 Msa0604290:CDS
TAACTGCATATTCACAACCA+GGG 0.669788 4_2:-49762422 None:intergenic
TAGATTGGCCTTCAGCACTG+AGG 0.685503 4_2:-49766445 None:intergenic
GATACACCCATTATTATGAG+CGG 0.686220 4_2:+49763821 Msa0604290:CDS
TTGATTGCAAATCTGGCATG+TGG 0.691443 4_2:-49766828 None:intergenic
GAATCTACAGTGCACCGAGG+AGG 0.691639 4_2:+49762594 Msa0604290:intron
CCAGCATCCTAATACTAGCG+AGG 0.692364 4_2:+49761444 Msa0604290:CDS
CATGGTCTGACCATGCACCA+AGG 0.699416 4_2:-49763596 None:intergenic
CTTGGTGCATGGTCAGACCA+TGG 0.701151 4_2:+49763597 Msa0604290:CDS
TCCAGTGGACTGTGGCACTG+TGG 0.734400 4_2:+49762624 Msa0604290:CDS
GGCAGATTTGACATTCACAG+AGG 0.749917 4_2:-49766804 None:intergenic
TGTGAATCTACAGTGCACCG+AGG 0.790165 4_2:+49762591 Msa0604290:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCTCTATATAATTTTT+TGG + chr4_2:49761537-49761556 Msa0604290:intron 10.0%
!!! TAAGAATTTTATAAATGAAA+TGG + chr4_2:49762894-49762913 Msa0604290:intron 10.0%
!!! TTTTGAACAATTATTTTTTT+GGG + chr4_2:49763494-49763513 Msa0604290:intron 10.0%
!! AATTAGATTTAGATAATATA+AGG - chr4_2:49764928-49764947 None:intergenic 10.0%
!! ATAAAATAAAAATGTGATGA+TGG - chr4_2:49759702-49759721 None:intergenic 15.0%
!! AATCAACATTAAAAAAAACA+GGG - chr4_2:49760243-49760262 None:intergenic 15.0%
!! TAATCAACATTAAAAAAAAC+AGG - chr4_2:49760244-49760263 None:intergenic 15.0%
!! AAAAAAAACATATTCAAAAC+AGG - chr4_2:49760869-49760888 None:intergenic 15.0%
!!! TTTACAAAACAATCAATTTT+AGG - chr4_2:49760895-49760914 None:intergenic 15.0%
!!! TAAAATTGATTGTTTTGTAA+AGG + chr4_2:49760894-49760913 Msa0604290:intron 15.0%
!! ATAAATATAACATATGAAAC+AGG - chr4_2:49761833-49761852 None:intergenic 15.0%
!! AATATATCTAATGTCTTAAA+CGG + chr4_2:49762771-49762790 Msa0604290:intron 15.0%
!! ATTTGATTAAAAAACATGTT+GGG - chr4_2:49763267-49763286 None:intergenic 15.0%
!! AATTTGATTAAAAAACATGT+TGG - chr4_2:49763268-49763287 None:intergenic 15.0%
!! TAGTTTATATAACATAGAAA+AGG + chr4_2:49763431-49763450 Msa0604290:intron 15.0%
!! CAAAAAAATAATTGTTCAAA+AGG - chr4_2:49763495-49763514 None:intergenic 15.0%
!!! CTTTTGAACAATTATTTTTT+TGG + chr4_2:49763493-49763512 Msa0604290:intron 15.0%
!!! TTTGAACAATTATTTTTTTG+GGG + chr4_2:49763495-49763514 Msa0604290:intron 15.0%
!!! AGATAAGACTTTTTTTTTAA+TGG - chr4_2:49764407-49764426 None:intergenic 15.0%
!!! TTAAAAAAAAAGTCTTATCT+CGG + chr4_2:49764407-49764426 Msa0604290:intron 15.0%
!! ATGTATATAATTTATGTGAA+AGG - chr4_2:49764734-49764753 None:intergenic 15.0%
!! CATAAATTATATACATGTAT+AGG + chr4_2:49764738-49764757 Msa0604290:intron 15.0%
!!! AAATCAATTTAGTTTTACAT+GGG - chr4_2:49764829-49764848 None:intergenic 15.0%
!!! AAAATCAATTTAGTTTTACA+TGG - chr4_2:49764830-49764849 None:intergenic 15.0%
!!! ACTTGATGATAATTATTTAT+AGG - chr4_2:49765041-49765060 None:intergenic 15.0%
!!! TATTTTTATGATCTTTATGT+TGG + chr4_2:49766081-49766100 Msa0604290:intron 15.0%
!!! CATTTTTAAAAATCATGATA+AGG + chr4_2:49767181-49767200 Msa0604290:three_prime_UTR 15.0%
!! AATTATATACCATATCATTT+GGG + chr4_2:49767213-49767232 Msa0604290:three_prime_UTR 15.0%
!!! TGTTTGTTTTTTTTTTGATC+AGG + chr4_2:49760174-49760193 Msa0604290:intron 20.0%
!! TACAGAATTTATGAAATGTT+TGG + chr4_2:49760301-49760320 Msa0604290:intron 20.0%
!!! AAAAAAAACAAGCTTTTGTT+TGG - chr4_2:49760386-49760405 None:intergenic 20.0%
!!! TCACTAAATCAATCTTTTTA+AGG - chr4_2:49760418-49760437 None:intergenic 20.0%
!!! TAGATTCTGTTTTTTTTTGT+AGG + chr4_2:49760514-49760533 Msa0604290:intron 20.0%
!!! TTTTTTTTGTTGGTTTTGAA+TGG + chr4_2:49760602-49760621 Msa0604290:intron 20.0%
!! AAATGAATATGATTCAAATG+AGG + chr4_2:49761059-49761078 Msa0604290:intron 20.0%
!!! AAAAAAAAAGTGTTTCTGTA+TGG + chr4_2:49761180-49761199 Msa0604290:intron 20.0%
!!! TGTTAATTCTGATCAAATTT+TGG + chr4_2:49761704-49761723 Msa0604290:intron 20.0%
!!! ATATGTCCTTTTTATTGTTT+TGG + chr4_2:49761740-49761759 Msa0604290:intron 20.0%
!!! TATGTCCTTTTTATTGTTTT+GGG + chr4_2:49761741-49761760 Msa0604290:intron 20.0%
!! TTATATCGAAGACAATAAAA+AGG + chr4_2:49762081-49762100 Msa0604290:CDS 20.0%
!! CAAAAGAAGTAAAAAAAATG+AGG - chr4_2:49762374-49762393 None:intergenic 20.0%
!! AAATTCTTATAAATGAAGTG+AGG - chr4_2:49762883-49762902 None:intergenic 20.0%
!!! TTGATACATTTTATCTACAT+AGG + chr4_2:49763568-49763587 Msa0604290:intron 20.0%
!! ATCAATAATTTATAGTTGCT+AGG + chr4_2:49763941-49763960 Msa0604290:intron 20.0%
!!! CTAATATTTTGATAGCTAAA+TGG + chr4_2:49763968-49763987 Msa0604290:intron 20.0%
!!! TATGTATATTTTTTGTTCAC+TGG + chr4_2:49764047-49764066 Msa0604290:intron 20.0%
!!! AATCAATTTAGTTTTACATG+GGG - chr4_2:49764828-49764847 None:intergenic 20.0%
!! TATCGAATAAGTATTAAACT+CGG - chr4_2:49764887-49764906 None:intergenic 20.0%
!! TATCTAAATCTCAGAATATT+TGG + chr4_2:49764955-49764974 Msa0604290:intron 20.0%
!! AGCTAAAATTAATGCTAAAT+TGG - chr4_2:49765003-49765022 None:intergenic 20.0%
!!! TGAATTTTAATACATTGTCA+AGG + chr4_2:49765160-49765179 Msa0604290:intron 20.0%
!! ACTATAAAGTATAAACTAAC+CGG - chr4_2:49765354-49765373 None:intergenic 20.0%
!!! CAGTTTAAAATATAGAATCA+AGG - chr4_2:49765406-49765425 None:intergenic 20.0%
!! AGCTACAATACAAAATTAAA+AGG - chr4_2:49765652-49765671 None:intergenic 20.0%
!! AAAAAAAATCTAACTAGCAA+GGG - chr4_2:49765816-49765835 None:intergenic 20.0%
!!! TAATTAGAAACATGTGTTTT+TGG + chr4_2:49766319-49766338 Msa0604290:intron 20.0%
!! TATAGTTGAGTATTAATCAT+GGG - chr4_2:49766352-49766371 None:intergenic 20.0%
!! ATATAGTTGAGTATTAATCA+TGG - chr4_2:49766353-49766372 None:intergenic 20.0%
!!! TATTCTTAATTTTGATTTCC+TGG + chr4_2:49766563-49766582 Msa0604290:intron 20.0%
!!! TGTTGTTTATTTTCTGTTAT+AGG + chr4_2:49767023-49767042 Msa0604290:three_prime_UTR 20.0%
!! TTATATACACGAATATATCT+AGG - chr4_2:49767141-49767160 None:intergenic 20.0%
!! TATATAAATAACCTTATGGT+TGG + chr4_2:49767154-49767173 Msa0604290:three_prime_UTR 20.0%
!! ATATAAATAACCTTATGGTT+GGG + chr4_2:49767155-49767174 Msa0604290:three_prime_UTR 20.0%
!! GAATTATATACCATATCATT+TGG + chr4_2:49767212-49767231 Msa0604290:three_prime_UTR 20.0%
! AAGGAATAGAAGTTGAAAAT+TGG - chr4_2:49759660-49759679 None:intergenic 25.0%
!! TAATGTTGCTTATGTGAATT+TGG + chr4_2:49760101-49760120 Msa0604290:intron 25.0%
!! AAAAAAACAGGGTTTTTGTT+TGG - chr4_2:49760232-49760251 None:intergenic 25.0%
!! GTTGATTATGTGAATTTGTT+TGG + chr4_2:49760256-49760275 Msa0604290:intron 25.0%
!! TTTGGTTTCTTGAAATTACT+TGG + chr4_2:49760274-49760293 Msa0604290:intron 25.0%
! TTGGTTTCTTGAAATTACTT+GGG + chr4_2:49760275-49760294 Msa0604290:intron 25.0%
!! AAGATTGATTTAGTGATTAG+TGG + chr4_2:49760422-49760441 Msa0604290:intron 25.0%
!!! AGATAAGATGTTGGTTTTAA+TGG + chr4_2:49760490-49760509 Msa0604290:intron 25.0%
!!! ATTCTGTTTTTTTTTGTAGG+TGG + chr4_2:49760517-49760536 Msa0604290:intron 25.0%
!!! ACTGTGTTTGTTTTTTTTGT+TGG + chr4_2:49760592-49760611 Msa0604290:intron 25.0%
!! GCAAAATTTTACCATATTGA+AGG + chr4_2:49760721-49760740 Msa0604290:intron 25.0%
! GAAATTGAATTTACCAATTG+TGG - chr4_2:49760841-49760860 None:intergenic 25.0%
!! TGAAGTCTTTTAAACCTTAT+TGG + chr4_2:49761126-49761145 Msa0604290:intron 25.0%
! GAAACAAATATCAACCAATA+AGG - chr4_2:49761143-49761162 None:intergenic 25.0%
! GAAAGTTAAAACACTAAAGA+AGG - chr4_2:49761217-49761236 None:intergenic 25.0%
! TCAGAATTAACAAAAGAAGA+GGG - chr4_2:49761696-49761715 None:intergenic 25.0%
! ATCAGAATTAACAAAAGAAG+AGG - chr4_2:49761697-49761716 None:intergenic 25.0%
! TATCACCCAAAACAATAAAA+AGG - chr4_2:49761749-49761768 None:intergenic 25.0%
! AAAAAACTTAAGATGGGTAT+AGG - chr4_2:49761796-49761815 None:intergenic 25.0%
!!! TATACCCATCTTAAGTTTTT+TGG + chr4_2:49761795-49761814 Msa0604290:intron 25.0%
!!! AAGTTTTTTGGTAGCTTTTA+TGG + chr4_2:49761807-49761826 Msa0604290:intron 25.0%
! AAAGAACAAAAAAGAACTGA+AGG - chr4_2:49761875-49761894 None:intergenic 25.0%
!!! TGACATTTTTTTGTCCTTTT+TGG + chr4_2:49761899-49761918 Msa0604290:intron 25.0%
! TTGACATATTTATTATGTCC+TGG + chr4_2:49762220-49762239 Msa0604290:intron 25.0%
! GGAATTGTTTCCAATTATTA+CGG + chr4_2:49762522-49762541 Msa0604290:intron 25.0%
! AAATCCAATACCGTAATAAT+TGG - chr4_2:49762535-49762554 None:intergenic 25.0%
! TCAACTTAAGCATGAAAATA+TGG - chr4_2:49762832-49762851 None:intergenic 25.0%
! AGTTATAGTCCAAACATAAA+GGG - chr4_2:49762937-49762956 None:intergenic 25.0%
! AAGTTATAGTCCAAACATAA+AGG - chr4_2:49762938-49762957 None:intergenic 25.0%
!! AATAATCCATGGACTATATT+AGG + chr4_2:49762971-49762990 Msa0604290:intron 25.0%
!!! ATGAATAAATTGCTGCTTTT+TGG + chr4_2:49763056-49763075 Msa0604290:intron 25.0%
! AATTAAATTAACAGTCAGCT+CGG - chr4_2:49763101-49763120 None:intergenic 25.0%
! CTGTTAATTTAATTACTTGC+AGG + chr4_2:49763107-49763126 Msa0604290:intron 25.0%
! CAGCAAAATTCAAATTTACA+GGG - chr4_2:49763217-49763236 None:intergenic 25.0%
! TATATTGCATTCTATGTTCT+TGG + chr4_2:49763287-49763306 Msa0604290:intron 25.0%
! TTTCAAGAAAGTTACAAGTA+TGG + chr4_2:49763352-49763371 Msa0604290:intron 25.0%
! TTCAAGAAAGTTACAAGTAT+GGG + chr4_2:49763353-49763372 Msa0604290:intron 25.0%
! AAGTTTATTATTTCGTTGCA+TGG + chr4_2:49763999-49764018 Msa0604290:intron 25.0%
!!! GAAAGTACATCTATGATTTT+CGG - chr4_2:49764086-49764105 None:intergenic 25.0%
!! TCATAAAAGCTTAAGTTGTT+AGG - chr4_2:49764110-49764129 None:intergenic 25.0%
!! TGCACAAACATAAAATTTTG+CGG - chr4_2:49764433-49764452 None:intergenic 25.0%
! TTAACCATATAATCCACATA+GGG - chr4_2:49764531-49764550 None:intergenic 25.0%
!! GAAGATTTTTCTATAACTAG+AGG - chr4_2:49764619-49764638 None:intergenic 25.0%
! TCGTTGTAAATATCTTTACT+TGG + chr4_2:49764658-49764677 Msa0604290:intron 25.0%
! TGTGAAAGGAAAAATAATGA+TGG - chr4_2:49764720-49764739 None:intergenic 25.0%
! TTTATGTGATGTGAATATCT+TGG + chr4_2:49764847-49764866 Msa0604290:intron 25.0%
! TTCGATATATGTTTATCATG+TGG + chr4_2:49764900-49764919 Msa0604290:intron 25.0%
! TGTTGAATGATTGACTAATA+AGG + chr4_2:49765261-49765280 Msa0604290:intron 25.0%
! TTTGAATATGCAAACTTACA+TGG + chr4_2:49765315-49765334 Msa0604290:intron 25.0%
! ACAATACAAAATTAAAAGGC+CGG - chr4_2:49765648-49765667 None:intergenic 25.0%
! ATAAGCTACTATTGTAGAAA+TGG - chr4_2:49765790-49765809 None:intergenic 25.0%
! CAAAAAAAATCTAACTAGCA+AGG - chr4_2:49765817-49765836 None:intergenic 25.0%
! GAAATGAACTTCAGAAATTA+TGG - chr4_2:49766129-49766148 None:intergenic 25.0%
!!! AATTTCTGAAGTTCATTTCA+AGG + chr4_2:49766130-49766149 Msa0604290:intron 25.0%
! ATAGTTGAGTATTAATCATG+GGG - chr4_2:49766351-49766370 None:intergenic 25.0%
!!! CTCAACTATATTTTGTTTTC+AGG + chr4_2:49766362-49766381 Msa0604290:intron 25.0%
! AGTCATTGAATTCTTTAGAT+TGG - chr4_2:49766463-49766482 None:intergenic 25.0%
! CGTGTATATAAATAACCTTA+TGG + chr4_2:49767150-49767169 Msa0604290:three_prime_UTR 25.0%
! ATTACAAATCCCAAATGATA+TGG - chr4_2:49767225-49767244 None:intergenic 25.0%
GAGAAATTGATATATACCTC+AGG - chr4_2:49759994-49760013 None:intergenic 30.0%
! TTGTTTGGTTTCAGAAAATG+TGG - chr4_2:49760217-49760236 None:intergenic 30.0%
! TTGTTTGGTTTCAGAAAATG+TGG - chr4_2:49760217-49760236 None:intergenic 30.0%
! ATTGATTTAGTGATTAGTGG+TGG + chr4_2:49760425-49760444 Msa0604290:intron 30.0%
AGGTTAATTGCAGTAATTGT+TGG + chr4_2:49760455-49760474 Msa0604290:intron 30.0%
GCTATAATGAGATAAGATGT+TGG + chr4_2:49760481-49760500 Msa0604290:intron 30.0%
AACCAAACTAATCAGTTACA+CGG - chr4_2:49760693-49760712 None:intergenic 30.0%
GATATCAGATTCCTTCAATA+TGG - chr4_2:49760735-49760754 None:intergenic 30.0%
!!! ATGTGTTTTAGTCCTCATAA+AGG + chr4_2:49760992-49761011 Msa0604290:intron 30.0%
TTAGACTTTAGTCCTTTATG+AGG - chr4_2:49761007-49761026 None:intergenic 30.0%
CAGAATTAACAAAAGAAGAG+GGG - chr4_2:49761695-49761714 None:intergenic 30.0%
GCTACCAAAAAACTTAAGAT+GGG - chr4_2:49761802-49761821 None:intergenic 30.0%
AGCTACCAAAAAACTTAAGA+TGG - chr4_2:49761803-49761822 None:intergenic 30.0%
ACAAAAAAGAACTGAAGGAA+AGG - chr4_2:49761870-49761889 None:intergenic 30.0%
TATAAGATCTACGAAGGTAA+CGG - chr4_2:49762066-49762085 None:intergenic 30.0%
TGGATAACATATAGTCTACA+TGG - chr4_2:49762149-49762168 None:intergenic 30.0%
CGCATGATGAAAATGAAATA+TGG - chr4_2:49762169-49762188 None:intergenic 30.0%
TTGATTGAGAAAAGTAGTGA+AGG - chr4_2:49762300-49762319 None:intergenic 30.0%
!!! TTGTTTTTGTCTAGTCAAAG+TGG + chr4_2:49762391-49762410 Msa0604290:intron 30.0%
GTTTCCAATTATTACGGTAT+TGG + chr4_2:49762528-49762547 Msa0604290:intron 30.0%
ATGTCTTAAACGGATACTAA+TGG + chr4_2:49762781-49762800 Msa0604290:intron 30.0%
!! ACTAATGGAGAGTATTTAAG+CGG + chr4_2:49762796-49762815 Msa0604290:intron 30.0%
!!! TTTTCATGCTTAAGTTGAAG+TGG + chr4_2:49762834-49762853 Msa0604290:intron 30.0%
TAGAATCCTAATATAGTCCA+TGG - chr4_2:49762980-49762999 None:intergenic 30.0%
ATTAAATTAACAGTCAGCTC+GGG - chr4_2:49763100-49763119 None:intergenic 30.0%
!!! CATCCTTGATTTTTTTCGAT+TGG - chr4_2:49763172-49763191 None:intergenic 30.0%
CAAAATTCAAATTTACAGGG+TGG - chr4_2:49763214-49763233 None:intergenic 30.0%
CCAGCAAAATTCAAATTTAC+AGG - chr4_2:49763218-49763237 None:intergenic 30.0%
! CCTGTAAATTTGAATTTTGC+TGG + chr4_2:49763215-49763234 Msa0604290:CDS 30.0%
AGTTACAAGTATGGGTATAT+TGG + chr4_2:49763361-49763380 Msa0604290:intron 30.0%
! GAACAAACTTTTCTTGATTC+AGG + chr4_2:49763697-49763716 Msa0604290:intron 30.0%
ATGATGATACTGAAAGAAGA+AGG + chr4_2:49763773-49763792 Msa0604290:CDS 30.0%
TGATGATACTGAAAGAAGAA+GGG + chr4_2:49763774-49763793 Msa0604290:CDS 30.0%
ATAGAGTGATACATACAGAT+TGG - chr4_2:49763858-49763877 None:intergenic 30.0%
TCACTCTATACTTACTTGTT+CGG + chr4_2:49763869-49763888 Msa0604290:intron 30.0%
TTTCTTTGGTCTCTCTTAAA+AGG + chr4_2:49764317-49764336 Msa0604290:intron 30.0%
! ATTTTCCTTTTGAACTTGAG+TGG + chr4_2:49764457-49764476 Msa0604290:intron 30.0%
GTTAACCATATAATCCACAT+AGG - chr4_2:49764532-49764551 None:intergenic 30.0%
!!! TTATCTTTTAGTCTTGGTTC+TGG - chr4_2:49764571-49764590 None:intergenic 30.0%
AGAACCAAGACTAAAAGATA+AGG + chr4_2:49764570-49764589 Msa0604290:intron 30.0%
! TTTTTCTATAACTAGAGGTG+TGG - chr4_2:49764614-49764633 None:intergenic 30.0%
!! CTAAGAAAGGTGTTATGATT+GGG - chr4_2:49764693-49764712 None:intergenic 30.0%
AGATTCATGGAAAGATATCA+GGG - chr4_2:49764776-49764795 None:intergenic 30.0%
AAGATTCATGGAAAGATATC+AGG - chr4_2:49764777-49764796 None:intergenic 30.0%
CTACTTACTACAAAGATTCA+TGG - chr4_2:49764789-49764808 None:intergenic 30.0%
!! ATTCTGAGATTTAGATAGCA+CGG - chr4_2:49764952-49764971 None:intergenic 30.0%
AGAATCAAACTTTATACCAC+AGG - chr4_2:49765112-49765131 None:intergenic 30.0%
TCAATCATTCAACATAGTCA+AGG - chr4_2:49765255-49765274 None:intergenic 30.0%
ATATGCAAACTTACATGGAA+TGG + chr4_2:49765320-49765339 Msa0604290:intron 30.0%
AGTGATTTCTTTCTTGATTG+AGG + chr4_2:49765371-49765390 Msa0604290:intron 30.0%
!! TGTATTTTGTGTTACTACTC+TGG + chr4_2:49765424-49765443 Msa0604290:intron 30.0%
CAATACAAAATTAAAAGGCC+GGG - chr4_2:49765647-49765666 None:intergenic 30.0%
GTCACAGCTTAAGTTTATTA+CGG + chr4_2:49765962-49765981 Msa0604290:CDS 30.0%
TCATTTCAAGGTGAAATAGA+AGG + chr4_2:49766142-49766161 Msa0604290:intron 30.0%
ACACTACGAAAAAATATACC+AGG - chr4_2:49766584-49766603 None:intergenic 30.0%
TATCTGATGTAGATGCTAAT+GGG + chr4_2:49766651-49766670 Msa0604290:CDS 30.0%
! ACCTTAACAAGTGTTTCTAA+CGG - chr4_2:49766876-49766895 None:intergenic 30.0%
TGTTGTAACATAATAGATGC+TGG + chr4_2:49767060-49767079 Msa0604290:three_prime_UTR 30.0%
AAAAATGTAACCCAACCATA+AGG - chr4_2:49767168-49767187 None:intergenic 30.0%
TCAACAAGATAGTTGACAAA+AGG - chr4_2:49767249-49767268 None:intergenic 30.0%
TCCTTTCTTCTTTCCTTTCA+CGG + chr4_2:49759675-49759694 Msa0604290:five_prime_UTR 35.0%
! AATCTAGGGCTTGAGAAATT+GGG - chr4_2:49759781-49759800 None:intergenic 35.0%
TTGGGATCCAAATTCTTCAA+TGG + chr4_2:49759807-49759826 Msa0604290:exon 35.0%
GTAGAAATCGTCATCTTCAA+GGG - chr4_2:49759872-49759891 None:intergenic 35.0%
TGTAGAAATCGTCATCTTCA+AGG - chr4_2:49759873-49759892 None:intergenic 35.0%
! AGTGATTATGATGATGATGC+TGG + chr4_2:49759928-49759947 Msa0604290:CDS 35.0%
ATTTAGTGATTAGTGGTGGT+TGG + chr4_2:49760429-49760448 Msa0604290:intron 35.0%
!!! CTGTTTTTTTTTGTAGGTGG+TGG + chr4_2:49760520-49760539 Msa0604290:intron 35.0%
CTAATCAGTTACACGGAAAT+CGG - chr4_2:49760686-49760705 None:intergenic 35.0%
! TTCCGTGTAACTGATTAGTT+TGG + chr4_2:49760688-49760707 Msa0604290:intron 35.0%
!! GTGTAACTGATTAGTTTGGT+TGG + chr4_2:49760692-49760711 Msa0604290:intron 35.0%
ATCTGATATCCAAGTAAGAC+AGG + chr4_2:49760745-49760764 Msa0604290:CDS 35.0%
!!! TTGATTTTTTCTCCTGCTGT+GGG + chr4_2:49761510-49761529 Msa0604290:intron 35.0%
!! TTTGGTATTTGTTTCTGCTG+TGG + chr4_2:49761555-49761574 Msa0604290:intron 35.0%
TTAACAAAAGAAGAGGGGAA+TGG - chr4_2:49761690-49761709 None:intergenic 35.0%
GGGTGATAGAATATGCAATT+TGG + chr4_2:49761761-49761780 Msa0604290:intron 35.0%
ATAAGATCTACGAAGGTAAC+GGG - chr4_2:49762065-49762084 None:intergenic 35.0%
CTTCGATATAAGATCTACGA+AGG - chr4_2:49762072-49762091 None:intergenic 35.0%
TAGTCTACATGGATTCGAAT+TGG - chr4_2:49762138-49762157 None:intergenic 35.0%
!! TTACTAGTTTAGCTTTAGCC+AGG - chr4_2:49762241-49762260 None:intergenic 35.0%
TAACTGCATATTCACAACCA+GGG - chr4_2:49762425-49762444 None:intergenic 35.0%
!!! TATGCAGTTACTTTTGATGC+TGG + chr4_2:49762435-49762454 Msa0604290:CDS 35.0%
AACAAAAGCTATACGAACAG+AGG - chr4_2:49762485-49762504 None:intergenic 35.0%
! TCTGTTCGTATAGCTTTTGT+TGG + chr4_2:49762484-49762503 Msa0604290:CDS 35.0%
AGTAGAAAGAGAGAGTAATG+TGG + chr4_2:49762733-49762752 Msa0604290:intron 35.0%
!! CCATGGATTATTAGTTTGTC+TGG - chr4_2:49762963-49762982 None:intergenic 35.0%
CCAGACAAACTAATAATCCA+TGG + chr4_2:49762960-49762979 Msa0604290:intron 35.0%
ATTAGGATTCTACATTCGCT+TGG + chr4_2:49762988-49763007 Msa0604290:intron 35.0%
CGACCAATCGAAAAAAATCA+AGG + chr4_2:49763166-49763185 Msa0604290:CDS 35.0%
GCATTCTATGTTCTTGGATA+AGG + chr4_2:49763293-49763312 Msa0604290:intron 35.0%
GCTCAATCAGTTTGAAAACA+TGG - chr4_2:49763538-49763557 None:intergenic 35.0%
TATCTACATAGGTTATGCCT+TGG + chr4_2:49763579-49763598 Msa0604290:intron 35.0%
!! CTTTTCTTGATTCAGGTTTC+TGG + chr4_2:49763704-49763723 Msa0604290:intron 35.0%
TACTGAAAGAAGAAGGGAAA+TGG + chr4_2:49763780-49763799 Msa0604290:CDS 35.0%
GATACACCCATTATTATGAG+CGG + chr4_2:49763821-49763840 Msa0604290:CDS 35.0%
!! TCAAATAAGAAGTGTCTTGC+AGG - chr4_2:49764168-49764187 None:intergenic 35.0%
! TGTCACTTCAGGTTTATCAA+AGG - chr4_2:49764227-49764246 None:intergenic 35.0%
! AAAAAGAACTCTGTCACTTC+AGG - chr4_2:49764238-49764257 None:intergenic 35.0%
TTGTATACTTCTCCTCCTAA+TGG + chr4_2:49764281-49764300 Msa0604290:intron 35.0%
GAGAGACCAAAGAAAACTAT+AGG - chr4_2:49764312-49764331 None:intergenic 35.0%
! GGTACCTTATCTTTTAGTCT+TGG - chr4_2:49764577-49764596 None:intergenic 35.0%
!! GCTAAGAAAGGTGTTATGAT+TGG - chr4_2:49764694-49764713 None:intergenic 35.0%
! TAATGATGGAGTGCTAAGAA+AGG - chr4_2:49764706-49764725 None:intergenic 35.0%
ACATGGAATGGAAAGTTAAC+CGG + chr4_2:49765332-49765351 Msa0604290:intron 35.0%
! AAAAATGTTTCGCCTTGTTC+AGG + chr4_2:49765758-49765777 Msa0604290:intron 35.0%
AAATGGCATATTCCTGAACA+AGG - chr4_2:49765773-49765792 None:intergenic 35.0%
AGTGAAAGATGAGGATTAAC+TGG - chr4_2:49765898-49765917 None:intergenic 35.0%
AATCCTCATCTTTCACTTTC+TGG + chr4_2:49765901-49765920 Msa0604290:intron 35.0%
ATAAACTTAAGCTGTGACTC+AGG - chr4_2:49765960-49765979 None:intergenic 35.0%
ACAGCTTAAGTTTATTACGG+AGG + chr4_2:49765965-49765984 Msa0604290:CDS 35.0%
TGAAATGGACGTATGCATAT+GGG + chr4_2:49766219-49766238 Msa0604290:CDS 35.0%
TACTATTTACCTGAGCATGA+GGG + chr4_2:49766242-49766261 Msa0604290:CDS 35.0%
CAGTTCTTTGAGTATTTGCA+AGG + chr4_2:49766275-49766294 Msa0604290:CDS 35.0%
GACTTTCGTACAAAATTAGC+TGG + chr4_2:49766479-49766498 Msa0604290:CDS 35.0%
CAAAATTAGCTGGATTGACT+AGG + chr4_2:49766489-49766508 Msa0604290:CDS 35.0%
ACTACTTCGAGAATTTAGTG+AGG + chr4_2:49766612-49766631 Msa0604290:CDS 35.0%
CTACTTCGAGAATTTAGTGA+GGG + chr4_2:49766613-49766632 Msa0604290:CDS 35.0%
CTATCTGATGTAGATGCTAA+TGG + chr4_2:49766650-49766669 Msa0604290:CDS 35.0%
ATCTGATGTAGATGCTAATG+GGG + chr4_2:49766652-49766671 Msa0604290:CDS 35.0%
AATCAACGTCGATGAAAATG+TGG + chr4_2:49766845-49766864 Msa0604290:exon 35.0%
ATCAACGTCGATGAAAATGT+GGG + chr4_2:49766846-49766865 Msa0604290:exon 35.0%
! TCCGTTAGAAACACTTGTTA+AGG + chr4_2:49766872-49766891 Msa0604290:three_prime_UTR 35.0%
TCTTCATCGTCTTCACATAT+TGG - chr4_2:49766953-49766972 None:intergenic 35.0%
AACAAATTCAGCTGAGTGAT+AGG - chr4_2:49767007-49767026 None:intergenic 35.0%
TCCGTGAAAGGAAAGAAGAA+AGG - chr4_2:49759679-49759698 None:intergenic 40.0%
! ATCTAGGGCTTGAGAAATTG+GGG - chr4_2:49759780-49759799 None:intergenic 40.0%
! GAATCTAGGGCTTGAGAAAT+TGG - chr4_2:49759782-49759801 None:intergenic 40.0%
AAGCCCTAGATTCTCGATTT+GGG + chr4_2:49759789-49759808 Msa0604290:five_prime_UTR 40.0%
GATCCCAAATCGAGAATCTA+GGG - chr4_2:49759795-49759814 None:intergenic 40.0%
TCGGAGTCCATTGAAGAATT+TGG - chr4_2:49759817-49759836 None:intergenic 40.0%
AGCATCGTGCATATCATCTT+CGG - chr4_2:49759836-49759855 None:intergenic 40.0%
GAAGATGACGATTTCTACAG+TGG + chr4_2:49759874-49759893 Msa0604290:CDS 40.0%
CGATTTCTACAGTGGTGATA+CGG + chr4_2:49759882-49759901 Msa0604290:CDS 40.0%
TGTCATCTTCCTGTCTTACT+TGG - chr4_2:49760757-49760776 None:intergenic 40.0%
TACTACTTCGTCACCACAAT+TGG + chr4_2:49760825-49760844 Msa0604290:CDS 40.0%
TGAGAGATGCTTTGTGTTGT+AGG + chr4_2:49761338-49761357 Msa0604290:intron 40.0%
TCAGTAAAGTGCATGATGCA+TGG + chr4_2:49761365-49761384 Msa0604290:CDS 40.0%
TATCTCACCTCGCTAGTATT+AGG - chr4_2:49761454-49761473 None:intergenic 40.0%
AATACTAGCGAGGTGAGATA+TGG + chr4_2:49761454-49761473 Msa0604290:intron 40.0%
!!! CTTGATTTTTTCTCCTGCTG+TGG + chr4_2:49761509-49761528 Msa0604290:intron 40.0%
TTTGAAAACTATCCTCGCTC+TGG + chr4_2:49761600-49761619 Msa0604290:CDS 40.0%
TTGAAAACTATCCTCGCTCT+GGG + chr4_2:49761601-49761620 Msa0604290:CDS 40.0%
! ATCCATACTGTTTCTCATGC+TGG + chr4_2:49761646-49761665 Msa0604290:CDS 40.0%
! TCCATACTGTTTCTCATGCT+GGG + chr4_2:49761647-49761666 Msa0604290:CDS 40.0%
!! TTTGTCCTTTTTGGCATGCT+AGG + chr4_2:49761908-49761927 Msa0604290:intron 40.0%
TGTATCCTAGCATGCCAAAA+AGG - chr4_2:49761916-49761935 None:intergenic 40.0%
CATCTCAACATCAAACATCC+AGG - chr4_2:49761962-49761981 None:intergenic 40.0%
AACTGCATATTCACAACCAG+GGG - chr4_2:49762424-49762443 None:intergenic 40.0%
GTAACTGCATATTCACAACC+AGG - chr4_2:49762426-49762445 None:intergenic 40.0%
TGTTGGAATGTAAGTTCTGC+TGG + chr4_2:49762501-49762520 Msa0604290:intron 40.0%
GATTCACAGTCACATTAGTC+AGG - chr4_2:49762579-49762598 None:intergenic 40.0%
CAGAGTCTGAAAACATGAAC+TGG + chr4_2:49762671-49762690 Msa0604290:CDS 40.0%
TTGAAGTGGACCTTGGTTAA+AGG + chr4_2:49762848-49762867 Msa0604290:intron 40.0%
TGAAGTGGACCTTGGTTAAA+GGG + chr4_2:49762849-49762868 Msa0604290:intron 40.0%
TAGTCCAAACATAAAGGGCT+AGG - chr4_2:49762932-49762951 None:intergenic 40.0%
GAGTTTCTCTGCATTTCTGT+AGG + chr4_2:49763028-49763047 Msa0604290:intron 40.0%
TTATGAAGCAGCTAAGCAAG+AGG + chr4_2:49763653-49763672 Msa0604290:CDS 40.0%
TATGAAGCAGCTAAGCAAGA+GGG + chr4_2:49763654-49763673 Msa0604290:CDS 40.0%
GGAAATGGCGAAGAATTCAT+TGG + chr4_2:49763795-49763814 Msa0604290:CDS 40.0%
! GATACATACAGATTGGTTGC+TGG - chr4_2:49763851-49763870 None:intergenic 40.0%
TTGTTCGGTAGTCATGTCTT+AGG + chr4_2:49763884-49763903 Msa0604290:intron 40.0%
TGTTCGGTAGTCATGTCTTA+GGG + chr4_2:49763885-49763904 Msa0604290:intron 40.0%
!! AATAAGAAGTGTCTTGCAGG+AGG - chr4_2:49764165-49764184 None:intergenic 40.0%
CAAAGGAATAACCAGTCAAG+AGG - chr4_2:49764210-49764229 None:intergenic 40.0%
AAACTATAGGCCAGACCATT+AGG - chr4_2:49764299-49764318 None:intergenic 40.0%
! GTCTGGCCTATAGTTTTCTT+TGG + chr4_2:49764303-49764322 Msa0604290:intron 40.0%
AAGCACCACTCAAGTTCAAA+AGG - chr4_2:49764465-49764484 None:intergenic 40.0%
TTTGTTTCAACCTCCCTATG+TGG + chr4_2:49764515-49764534 Msa0604290:intron 40.0%
! ACCTCCCTATGTGGATTATA+TGG + chr4_2:49764524-49764543 Msa0604290:intron 40.0%
ACCATATAATCCACATAGGG+AGG - chr4_2:49764528-49764547 None:intergenic 40.0%
CAGCTTCAACATTCCTCTAA+GGG - chr4_2:49765193-49765212 None:intergenic 40.0%
ACAGCTTCAACATTCCTCTA+AGG - chr4_2:49765194-49765213 None:intergenic 40.0%
AGAGGAATGTTGAAGCTGTT+GGG + chr4_2:49765195-49765214 Msa0604290:intron 40.0%
! TTTTTCTCGTCTCACAGTCA+AGG + chr4_2:49765550-49765569 Msa0604290:intron 40.0%
CATCAACGACAGATTATGCA+AGG - chr4_2:49765854-49765873 None:intergenic 40.0%
AATCTGTCGTTGATGCTTCT+AGG + chr4_2:49765859-49765878 Msa0604290:intron 40.0%
ATCTGTCGTTGATGCTTCTA+GGG + chr4_2:49765860-49765879 Msa0604290:intron 40.0%
TTAAGTTTATTACGGAGGCC+TGG + chr4_2:49765970-49765989 Msa0604290:CDS 40.0%
TCTTCCAGATAGTTGAGTGT+AGG + chr4_2:49766189-49766208 Msa0604290:intron 40.0%
CTGAAATGGACGTATGCATA+TGG + chr4_2:49766218-49766237 Msa0604290:CDS 40.0%
GTACTATTTACCTGAGCATG+AGG + chr4_2:49766241-49766260 Msa0604290:CDS 40.0%
!!! TTTTCAGGTGAAGCAGAATC+TGG + chr4_2:49766377-49766396 Msa0604290:intron 40.0%
!! TTAGTGAGGGCTTTAGAGAA+TGG + chr4_2:49766626-49766645 Msa0604290:CDS 40.0%
GAACTTCTGATGATAGTCAC+TGG + chr4_2:49766765-49766784 Msa0604290:CDS 40.0%
TTGATTGCAAATCTGGCATG+TGG - chr4_2:49766831-49766850 None:intergenic 40.0%
! ATCGACGTTGATTGCAAATC+TGG - chr4_2:49766838-49766857 None:intergenic 40.0%
GGGTTCTTCTCATTATATGC+TGG + chr4_2:49766925-49766944 Msa0604290:three_prime_UTR 40.0%
AATTCAGCTGAGTGATAGGA+GGG - chr4_2:49767003-49767022 None:intergenic 40.0%
AAATTCAGCTGAGTGATAGG+AGG - chr4_2:49767004-49767023 None:intergenic 40.0%
!! ATGTGATGATGGTCCGTGAA+AGG - chr4_2:49759691-49759710 None:intergenic 45.0%
CAAGCCCTAGATTCTCGATT+TGG + chr4_2:49759788-49759807 Msa0604290:five_prime_UTR 45.0%
GGATCCCAAATCGAGAATCT+AGG - chr4_2:49759796-49759815 None:intergenic 45.0%
TATGCACGATGCTCACGATA+TGG + chr4_2:49759843-49759862 Msa0604290:CDS 45.0%
TACAGTGGTGATACGGAAGA+AGG + chr4_2:49759889-49759908 Msa0604290:CDS 45.0%
TGATTAGTGGTGGTTGGATG+AGG + chr4_2:49760435-49760454 Msa0604290:intron 45.0%
GTATTAGGATGCTGGACAAC+TGG - chr4_2:49761439-49761458 None:intergenic 45.0%
TAGCGAGGTGAGATATGGAT+GGG + chr4_2:49761459-49761478 Msa0604290:intron 45.0%
AACAGATGCCACATGTAAGC+TGG - chr4_2:49761581-49761600 None:intergenic 45.0%
TCCCAGCATGAGAAACAGTA+TGG - chr4_2:49761651-49761670 None:intergenic 45.0%
! TACTGTTTCTCATGCTGGGA+AGG + chr4_2:49761651-49761670 Msa0604290:CDS 45.0%
ATCAGCACGTCCATCAATGA+TGG + chr4_2:49761935-49761954 Msa0604290:CDS 45.0%
ACATCCAGGACCATCATTGA+TGG - chr4_2:49761948-49761967 None:intergenic 45.0%
CTACATGGATTCGAATTGGC+AGG - chr4_2:49762134-49762153 None:intergenic 45.0%
!!! GCAGTTACTTTTGATGCTGG+AGG + chr4_2:49762438-49762457 Msa0604290:CDS 45.0%
!!! GTTACTTTTGATGCTGGAGG+TGG + chr4_2:49762441-49762460 Msa0604290:CDS 45.0%
!! GCTTAAGTTGAAGTGGACCT+TGG + chr4_2:49762841-49762860 Msa0604290:intron 45.0%
GAAGTGGACCTTGGTTAAAG+GGG + chr4_2:49762850-49762869 Msa0604290:intron 45.0%
GATGCCTAGCCCTTTATGTT+TGG + chr4_2:49762925-49762944 Msa0604290:intron 45.0%
! TCGATTGGTCGCTTGCATTT+GGG - chr4_2:49763157-49763176 None:intergenic 45.0%
! TTCGATTGGTCGCTTGCATT+TGG - chr4_2:49763158-49763177 None:intergenic 45.0%
! ATAGGTTATGCCTTGGTGCA+TGG + chr4_2:49763586-49763605 Msa0604290:intron 45.0%
TCAGACCATGGTGAAAGAAC+TGG + chr4_2:49763609-49763628 Msa0604290:CDS 45.0%
AACCACCAGTTCTTTCACCA+TGG - chr4_2:49763617-49763636 None:intergenic 45.0%
ACACCCATTATTATGAGCGG+TGG + chr4_2:49763824-49763843 Msa0604290:CDS 45.0%
CACCCATTATTATGAGCGGT+GGG + chr4_2:49763825-49763844 Msa0604290:CDS 45.0%
TACTTCTCCTCCTAATGGTC+TGG + chr4_2:49764286-49764305 Msa0604290:intron 45.0%
TGGTCTCTCTTAAAAGGTCC+AGG + chr4_2:49764323-49764342 Msa0604290:intron 45.0%
GGTCTCTCTTAAAAGGTCCA+GGG + chr4_2:49764324-49764343 Msa0604290:intron 45.0%
! ATAAGGTACCCCAAGTCTCT+TGG + chr4_2:49764587-49764606 Msa0604290:intron 45.0%
! TAAGGTACCCCAAGTCTCTT+GGG + chr4_2:49764588-49764607 Msa0604290:intron 45.0%
ATCTGTTCTGTGTCATCCTG+TGG + chr4_2:49765093-49765112 Msa0604290:intron 45.0%
! CAACATTCCTCTAAGGGAGT+TGG - chr4_2:49765187-49765206 None:intergenic 45.0%
CAGCTTCAACATTCCTCTGA+GGG - chr4_2:49765218-49765237 None:intergenic 45.0%
ACAGCTTCAACATTCCTCTG+AGG - chr4_2:49765219-49765238 None:intergenic 45.0%
CAGAGGAATGTTGAAGCTGT+TGG + chr4_2:49765219-49765238 Msa0604290:intron 45.0%
CTGCCAGAAAGTGAAAGATG+AGG - chr4_2:49765907-49765926 None:intergenic 45.0%
ACTTAAGCTGTGACTCAGGT+TGG - chr4_2:49765956-49765975 None:intergenic 45.0%
CAAATCATTTACCTGCAGCC+AGG - chr4_2:49765991-49766010 None:intergenic 45.0%
CTCTCCTACACTCAACTATC+TGG - chr4_2:49766196-49766215 None:intergenic 45.0%
!! AGTGTAGGAGAGTGCTGAAA+TGG + chr4_2:49766204-49766223 Msa0604290:CDS 45.0%
!!! TTTTTTGCACCCTCATGCTC+AGG - chr4_2:49766254-49766273 None:intergenic 45.0%
ACGAGCTCAAAAAATGCTGC+AGG + chr4_2:49766692-49766711 Msa0604290:CDS 45.0%
CGAGCTCAAAAAATGCTGCA+GGG + chr4_2:49766693-49766712 Msa0604290:CDS 45.0%
GGCAGATTTGACATTCACAG+AGG - chr4_2:49766807-49766826 None:intergenic 45.0%
ATTGCAAATCTGGCATGTGG+TGG - chr4_2:49766828-49766847 None:intergenic 45.0%
! GAAACACTTGTTAAGGTGCG+TGG + chr4_2:49766879-49766898 Msa0604290:three_prime_UTR 45.0%
AAGAACCCAATCTCAGCCTT+TGG - chr4_2:49766913-49766932 None:intergenic 45.0%
!!! CATTTTTATTTTATTTTTTT+TGG + chr4_2:49759708-49759727 Msa0604290:five_prime_UTR 5.0%
!! TTAAAAATATTACAAATAAT+TGG + chr4_2:49765068-49765087 Msa0604290:intron 5.0%
!! ATAAAATAAAATACAAAAAA+AGG - chr4_2:49767112-49767131 None:intergenic 5.0%
! TGATACGGAAGAAGGTGCGA+TGG + chr4_2:49759897-49759916 Msa0604290:CDS 50.0%
TGAAGAGCGAGTCCGAAAAG+CGG + chr4_2:49761396-49761415 Msa0604290:CDS 50.0%
!! CCAACAAGCCAACCGCTTTT+CGG - chr4_2:49761411-49761430 None:intergenic 50.0%
CCTCGCTAGTATTAGGATGC+TGG - chr4_2:49761447-49761466 None:intergenic 50.0%
CCAGCATCCTAATACTAGCG+AGG + chr4_2:49761444-49761463 Msa0604290:CDS 50.0%
CTAGCGAGGTGAGATATGGA+TGG + chr4_2:49761458-49761477 Msa0604290:intron 50.0%
GAGAATATAGCTCCCACAGC+AGG - chr4_2:49761525-49761544 None:intergenic 50.0%
!! AACTATCCTCGCTCTGGGAT+TGG + chr4_2:49761606-49761625 Msa0604290:CDS 50.0%
GGGATTGGAATGGCTTCTTG+TGG + chr4_2:49761621-49761640 Msa0604290:CDS 50.0%
ACGTCCATCAATGATGGTCC+TGG + chr4_2:49761941-49761960 Msa0604290:CDS 50.0%
AGATGTCCTGAACCCACTTG+TGG + chr4_2:49761977-49761996 Msa0604290:CDS 50.0%
TGTGAATCTACAGTGCACCG+AGG + chr4_2:49762591-49762610 Msa0604290:intron 50.0%
ACTGTGGCACTGTGGTAAAG+TGG + chr4_2:49762632-49762651 Msa0604290:CDS 50.0%
GACTCACACCCCTTTAACCA+AGG - chr4_2:49762861-49762880 None:intergenic 50.0%
GACCATGGTGAAAGAACTGG+TGG + chr4_2:49763612-49763631 Msa0604290:CDS 50.0%
AAGCAAGAGGGAGTGGTAAG+AGG + chr4_2:49763666-49763685 Msa0604290:intron 50.0%
GGCCCACCGCTCATAATAAT+GGG - chr4_2:49763830-49763849 None:intergenic 50.0%
TGGCCCACCGCTCATAATAA+TGG - chr4_2:49763831-49763850 None:intergenic 50.0%
!! TCTTGCAGGAGGAGCATTGT+TGG - chr4_2:49764154-49764173 None:intergenic 50.0%
!! CCAGTCAAGAGGAGTACTCT+TGG - chr4_2:49764199-49764218 None:intergenic 50.0%
!! CCAAGAGTACTCCTCTTGAC+TGG + chr4_2:49764196-49764215 Msa0604290:intron 50.0%
CTATAGGCCAGACCATTAGG+AGG - chr4_2:49764296-49764315 None:intergenic 50.0%
! AAGGTCCAGGGTTCAAGTTC+TGG + chr4_2:49764336-49764355 Msa0604290:intron 50.0%
TCAAGGACCAACTCCCTTAG+AGG + chr4_2:49765177-49765196 Msa0604290:intron 50.0%
TGTTGAAGCTGTTCCCTCAG+AGG + chr4_2:49765202-49765221 Msa0604290:intron 50.0%
GTTGAAGCTGTTGGGTGAGT+TGG + chr4_2:49765228-49765247 Msa0604290:intron 50.0%
TTAAAAGGCCGGGAGAGAGA+TGG - chr4_2:49765637-49765656 None:intergenic 50.0%
AGGTGAAGCAGAATCTGGTC+TGG + chr4_2:49766382-49766401 Msa0604290:intron 50.0%
! CAGCAATTCCTCAGTGCTGA+AGG + chr4_2:49766437-49766456 Msa0604290:CDS 50.0%
!! TAGATTGGCCTTCAGCACTG+AGG - chr4_2:49766448-49766467 None:intergenic 50.0%
! TGAGCTCGTTGCTTTGCTGA+AGG - chr4_2:49766681-49766700 None:intergenic 50.0%
AAATGCTGCAGGGAGCAGTA+AGG + chr4_2:49766703-49766722 Msa0604290:CDS 50.0%
AATGCTGCAGGGAGCAGTAA+GGG + chr4_2:49766704-49766723 Msa0604290:CDS 50.0%
! AATCTCAGCCTTTGGTGCAG+TGG - chr4_2:49766905-49766924 None:intergenic 50.0%
ACTGCACCAAAGGCTGAGAT+TGG + chr4_2:49766904-49766923 Msa0604290:three_prime_UTR 50.0%
CTGCACCAAAGGCTGAGATT+GGG + chr4_2:49766905-49766924 Msa0604290:three_prime_UTR 50.0%
GATTGAGTCTCGTCGACCTG+AGG + chr4_2:49759975-49759994 Msa0604290:CDS 55.0%
!! CCGAAAAGCGGTTGGCTTGT+TGG + chr4_2:49761408-49761427 Msa0604290:CDS 55.0%
TGCTGTGGCCAGCTTACATG+TGG + chr4_2:49761570-49761589 Msa0604290:intron 55.0%
!! TCCTCGCTCTGGGATTGGAA+TGG + chr4_2:49761611-49761630 Msa0604290:CDS 55.0%
CCAATAGCAGCGCCACAAGT+GGG - chr4_2:49761992-49762011 None:intergenic 55.0%
ACCAATAGCAGCGCCACAAG+TGG - chr4_2:49761993-49762012 None:intergenic 55.0%
GCATATTCACAACCAGGGGC+AGG - chr4_2:49762420-49762439 None:intergenic 55.0%
GAATCTACAGTGCACCGAGG+AGG + chr4_2:49762594-49762613 Msa0604290:intron 55.0%
! GGTCGCTTGCATTTGGGACA+TGG - chr4_2:49763151-49763170 None:intergenic 55.0%
CATGGTCTGACCATGCACCA+AGG - chr4_2:49763599-49763618 None:intergenic 55.0%
! CTTGGTGCATGGTCAGACCA+TGG + chr4_2:49763597-49763616 Msa0604290:CDS 55.0%
AGCAGCTAAGCAAGAGGGAG+TGG + chr4_2:49763659-49763678 Msa0604290:CDS 55.0%
CCTTGCCAGAACTTGAACCC+TGG - chr4_2:49764344-49764363 None:intergenic 55.0%
! CCAGGGTTCAAGTTCTGGCA+AGG + chr4_2:49764341-49764360 Msa0604290:intron 55.0%
AGGTGTGGCCCAAGAGACTT+GGG - chr4_2:49764599-49764618 None:intergenic 55.0%
GTACTCAGCCATCTCTCTCC+CGG + chr4_2:49765626-49765645 Msa0604290:intron 55.0%
ATGCTGCAGGGAGCAGTAAG+GGG + chr4_2:49766705-49766724 Msa0604290:CDS 55.0%
GAGCGAGTCCGAAAAGCGGT+TGG + chr4_2:49761400-49761419 Msa0604290:CDS 60.0%
GCCATTCCAATCCCAGAGCG+AGG - chr4_2:49761615-49761634 None:intergenic 60.0%
CCCACTTGTGGCGCTGCTAT+TGG + chr4_2:49761989-49762008 Msa0604290:CDS 60.0%
TCAAAGTGGTGTCCTGCCCC+TGG + chr4_2:49762405-49762424 Msa0604290:CDS 60.0%
CACTGGACGATGAGCCTCCT+CGG - chr4_2:49762611-49762630 None:intergenic 60.0%
!! GCTCATCGTCCAGTGGACTG+TGG + chr4_2:49762616-49762635 Msa0604290:CDS 60.0%
!! TCCAGTGGACTGTGGCACTG+TGG + chr4_2:49762624-49762643 Msa0604290:CDS 60.0%
ACCACAGTGCCACAGTCCAC+TGG - chr4_2:49762628-49762647 None:intergenic 60.0%
GGTGTGGCCCAAGAGACTTG+GGG - chr4_2:49764598-49764617 None:intergenic 60.0%
GAGGTGTGGCCCAAGAGACT+TGG - chr4_2:49764600-49764619 None:intergenic 60.0%
TATTACGGAGGCCTGGCTGC+AGG + chr4_2:49765977-49765996 Msa0604290:CDS 60.0%
GGAGCAGTAAGGGGAGAGCT+GGG + chr4_2:49766714-49766733 Msa0604290:CDS 60.0%
AGTAAGGGGAGAGCTGGGAG+AGG + chr4_2:49766719-49766738 Msa0604290:CDS 60.0%
GGGAGAGCTGGGAGAGGAAA+GGG + chr4_2:49766725-49766744 Msa0604290:CDS 60.0%
! GCAGCGCCACAAGTGGGTTC+AGG - chr4_2:49761986-49762005 None:intergenic 65.0%
CGAGGAGGCTCATCGTCCAG+TGG + chr4_2:49762609-49762628 Msa0604290:CDS 65.0%
GGGAGCAGTAAGGGGAGAGC+TGG + chr4_2:49766713-49766732 Msa0604290:CDS 65.0%
GGGGAGAGCTGGGAGAGGAA+AGG + chr4_2:49766724-49766743 Msa0604290:CDS 65.0%
GTGCGTGGCCACTGCACCAA+AGG + chr4_2:49766894-49766913 Msa0604290:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 49759650 49767275 49759650 ID=Msa0604290;Name=Msa0604290
chr4_2 mRNA 49759650 49767275 49759650 ID=Msa0604290-mRNA-1;Parent=Msa0604290;Name=Msa0604290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=176|1|1|1|0.92|1|15|416|584
chr4_2 exon 49759650 49759996 49759650 ID=Msa0604290-mRNA-1:exon:11498;Parent=Msa0604290-mRNA-1
chr4_2 exon 49760722 49760846 49760722 ID=Msa0604290-mRNA-1:exon:11499;Parent=Msa0604290-mRNA-1
chr4_2 exon 49761360 49761465 49761360 ID=Msa0604290-mRNA-1:exon:11500;Parent=Msa0604290-mRNA-1
chr4_2 exon 49761582 49761672 49761582 ID=Msa0604290-mRNA-1:exon:11501;Parent=Msa0604290-mRNA-1
chr4_2 exon 49761930 49762102 49761930 ID=Msa0604290-mRNA-1:exon:11502;Parent=Msa0604290-mRNA-1
chr4_2 exon 49762405 49762509 49762405 ID=Msa0604290-mRNA-1:exon:11503;Parent=Msa0604290-mRNA-1
chr4_2 exon 49762604 49762692 49762604 ID=Msa0604290-mRNA-1:exon:11504;Parent=Msa0604290-mRNA-1
chr4_2 exon 49763129 49763236 49763129 ID=Msa0604290-mRNA-1:exon:11505;Parent=Msa0604290-mRNA-1
chr4_2 exon 49763590 49763680 49763590 ID=Msa0604290-mRNA-1:exon:11506;Parent=Msa0604290-mRNA-1
chr4_2 exon 49763772 49763861 49763772 ID=Msa0604290-mRNA-1:exon:11507;Parent=Msa0604290-mRNA-1
chr4_2 exon 49765567 49765614 49765567 ID=Msa0604290-mRNA-1:exon:11508;Parent=Msa0604290-mRNA-1
chr4_2 exon 49765927 49765998 49765927 ID=Msa0604290-mRNA-1:exon:11509;Parent=Msa0604290-mRNA-1
chr4_2 exon 49766197 49766296 49766197 ID=Msa0604290-mRNA-1:exon:11510;Parent=Msa0604290-mRNA-1
chr4_2 exon 49766384 49766510 49766384 ID=Msa0604290-mRNA-1:exon:11511;Parent=Msa0604290-mRNA-1
chr4_2 exon 49766601 49767275 49766601 ID=Msa0604290-mRNA-1:exon:11512;Parent=Msa0604290-mRNA-1
chr4_2 five_prime_UTR 49759650 49759825 49759650 ID=Msa0604290-mRNA-1:five_prime_utr;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49759826 49759996 49759826 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49760722 49760846 49760722 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49761360 49761465 49761360 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49761582 49761672 49761582 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49761930 49762102 49761930 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49762405 49762509 49762405 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49762604 49762692 49762604 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49763129 49763236 49763129 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49763590 49763680 49763590 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49763772 49763861 49763772 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49765567 49765614 49765567 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49765927 49765998 49765927 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49766197 49766296 49766197 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49766384 49766510 49766384 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 CDS 49766601 49766859 49766601 ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2 three_prime_UTR 49766860 49767275 49766860 ID=Msa0604290-mRNA-1:three_prime_utr;Parent=Msa0604290-mRNA-1
Gene Sequence

>Msa0604290

ATGGACTCCGAAGATGATATGCACGATGCTCACGATATGGAGTCCCTTGAAGATGACGATTTCTACAGTGGTGATACGGAAGAAGGTGCGATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACCATATTGAAGGAATCTGATATCCAAGTAAGACAGGAAGATGACATTGATACAGTTGCAGCTGTTCTTTCTGTATCAAAAGTTGCTGCAAGCATACTACTTCGTCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTCCGAAAAGCGGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATACTAGCGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGCTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATACATCAGCACGTCCATCAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGCGCTGCTATTGGTCAAGATATGATTGATTCATTAGCATGTAATGAAGATAAAGAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAATGCAAGCGACCAATCGAAAAAAATCAAGGATGCATGCACATCACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAGAGATACACCCATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGAACAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAGCATGAGGGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAAGAGCTACAGCAATTCCTCAGTGCTGAAGGCCAATCTAAAGAATTCAATGACTTTCGTACAAAATTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCTGATGTAGATGCTAATGGGGCTTCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGTAAGGGGAGAGCTGGGAGAGGAAAGGGAGCTTTGCGATCAAACAGAACTTCTGATGATAGTCACTGGAGCTGCGAACATTGTACCTCTGTGAATGTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA
Protein sequence

>Msa0604290

MDSEDDMHDAHDMESLEDDDFYSGDTEEGAMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIQVRQEDDIDTVAAVLSVSKVAASILLRHHNWSVSKVHDAWFADEERVRKAVGLLEKPVVQHPNTSELTCGICFENYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDSLACNEDKEKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLEQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEGAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSAEGQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGASFSKATSSKNAAGSSKGRAGRGKGALRSNRTSDDSHWSCEHCTSVNVKSATTCQICNQRR*