AlfalfaGEDB | Msa0604290

M. sativa cultivar zhongmu-4 / Msa0604290

KEGG: K11968
GO: GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
PFAM: PF01485.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604290	XP_013456272.1	98.801	584	7	0	1	584	1	584	0.0	1215

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604290	sp\|Q84RR0\|ARI7_ARATH	72.887	568	138	5	1	559	1	561	0.0	847

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa0604290	0.855986	4.364161e-62	-8.615850e-47
Msa0001830	Msa0604290	0.837186	6.029432e-57	-8.615850e-47
Msa0004840	Msa0604290	0.846928	1.595968e-59	-8.615850e-47
Msa0007440	Msa0604290	0.819467	1.143893e-52	-8.615850e-47
Msa0008200	Msa0604290	0.826112	3.243824e-54	-8.615850e-47
Msa0010110	Msa0604290	0.811176	7.982062e-51	-8.615850e-47
Msa0010490	Msa0604290	0.851034	1.154433e-60	-8.615850e-47
Msa0010500	Msa0604290	0.835660	1.474442e-56	-8.615850e-47
Msa0012710	Msa0604290	0.803202	3.900444e-49	-8.615850e-47
Msa0015090	Msa0604290	0.857963	1.140297e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604290	MtrunA17_Chr4g0033361	98.801	584	7	0	1	584	1	584	0.0	1215
Msa0604290	MtrunA17_Chr2g0329221	80.268	598	102	4	1	584	1	596	0.0	967
Msa0604290	MtrunA17_Chr3g0110331	71.160	586	153	6	1	582	1	574	0.0	840
Msa0604290	MtrunA17_Chr3g0110341	69.244	582	149	5	1	582	30	581	0.0	792
Msa0604290	MtrunA17_Chr5g0447801	83.746	283	46	0	254	536	3	285	5.84e-177	502
Msa0604290	MtrunA17_Chr4g0038181	41.841	478	233	9	57	519	2	449	4.14e-128	383
Msa0604290	MtrunA17_Chr4g0034371	29.423	537	336	13	18	529	2	520	5.12e-65	222
Msa0604290	MtrunA17_Chr4g0038201	36.438	365	164	11	38	395	10	313	6.25e-61	205
Msa0604290	MtrunA17_Chr4g0038191	56.667	90	38	1	430	519	2	90	1.62e-26	104
Msa0604290	MtrunA17_Chr5g0434721	25.229	218	121	6	117	329	134	314	3.88e-15	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0604290	AT2G31510.1	72.887	568	138	5	1	559	1	561	0.0	847
Msa0604290	AT1G65430.1	69.338	574	159	4	18	584	4	567	0.0	823
Msa0604290	AT2G31510.3	76.892	489	109	2	74	559	2	489	0.0	792
Msa0604290	AT2G31510.2	74.206	504	118	3	1	498	1	498	0.0	792
Msa0604290	AT1G05890.1	70.385	520	138	4	20	533	16	525	0.0	768
Msa0604290	AT1G05890.2	73.684	475	122	2	59	533	96	567	0.0	754
Msa0604290	AT2G31770.1	56.673	517	195	8	16	522	3	500	0.0	599
Msa0604290	AT2G31760.1	59.140	465	171	6	57	519	40	487	0.0	582
Msa0604290	AT2G31780.1	55.677	458	179	8	1	451	1	441	0.0	520
Msa0604290	AT1G05880.2	39.407	472	253	8	61	523	40	487	8.61e-108	333

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Find 166 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTGCAGGGAGCAGTA+AGG	0.522523	4_2:+49766703	Msa0604290:CDS
AAATTCAGCTGAGTGATAGG+AGG	0.580861	4_2:-49767001	None:intergenic
AACAAAAGCTATACGAACAG+AGG	0.655471	4_2:-49762482	None:intergenic
AACAAATTCAGCTGAGTGAT+AGG	0.433492	4_2:-49767004	None:intergenic
AACCACCAGTTCTTTCACCA+TGG	0.660461	4_2:-49763614	None:intergenic
AACTATCCTCGCTCTGGGAT+TGG	0.407143	4_2:+49761606	Msa0604290:CDS
AACTGCATATTCACAACCAG+GGG	0.659172	4_2:-49762421	None:intergenic
AAGAACCCAATCTCAGCCTT+TGG	0.445930	4_2:-49766910	None:intergenic
AAGCCCTAGATTCTCGATTT+GGG	0.408853	4_2:+49759789	Msa0604290:five_prime_UTR
AAGGAATAGAAGTTGAAAAT+TGG	0.256098	4_2:-49759657	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAATTGATATATACCTC+AGG	-	chr4_2:49759994-49760013	None:intergenic	30.0%
AGGTTAATTGCAGTAATTGT+TGG	+	chr4_2:49760455-49760474	Msa0604290:intron	30.0%
GCTATAATGAGATAAGATGT+TGG	+	chr4_2:49760481-49760500	Msa0604290:intron	30.0%
AACCAAACTAATCAGTTACA+CGG	-	chr4_2:49760693-49760712	None:intergenic	30.0%
GATATCAGATTCCTTCAATA+TGG	-	chr4_2:49760735-49760754	None:intergenic	30.0%
TTAGACTTTAGTCCTTTATG+AGG	-	chr4_2:49761007-49761026	None:intergenic	30.0%
CAGAATTAACAAAAGAAGAG+GGG	-	chr4_2:49761695-49761714	None:intergenic	30.0%
GCTACCAAAAAACTTAAGAT+GGG	-	chr4_2:49761802-49761821	None:intergenic	30.0%
AGCTACCAAAAAACTTAAGA+TGG	-	chr4_2:49761803-49761822	None:intergenic	30.0%
ACAAAAAAGAACTGAAGGAA+AGG	-	chr4_2:49761870-49761889	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	49759650	49767275	49759650	ID=Msa0604290;Name=Msa0604290
chr4_2	mRNA	49759650	49767275	49759650	ID=Msa0604290-mRNA-1;Parent=Msa0604290;Name=Msa0604290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=176\|1\|1\|1\|0.92\|1\|15\|416\|584
chr4_2	exon	49759650	49759996	49759650	ID=Msa0604290-mRNA-1:exon:11498;Parent=Msa0604290-mRNA-1
chr4_2	exon	49760722	49760846	49760722	ID=Msa0604290-mRNA-1:exon:11499;Parent=Msa0604290-mRNA-1
chr4_2	exon	49761360	49761465	49761360	ID=Msa0604290-mRNA-1:exon:11500;Parent=Msa0604290-mRNA-1
chr4_2	exon	49761582	49761672	49761582	ID=Msa0604290-mRNA-1:exon:11501;Parent=Msa0604290-mRNA-1
chr4_2	exon	49761930	49762102	49761930	ID=Msa0604290-mRNA-1:exon:11502;Parent=Msa0604290-mRNA-1
chr4_2	exon	49762405	49762509	49762405	ID=Msa0604290-mRNA-1:exon:11503;Parent=Msa0604290-mRNA-1
chr4_2	exon	49762604	49762692	49762604	ID=Msa0604290-mRNA-1:exon:11504;Parent=Msa0604290-mRNA-1
chr4_2	exon	49763129	49763236	49763129	ID=Msa0604290-mRNA-1:exon:11505;Parent=Msa0604290-mRNA-1
chr4_2	exon	49763590	49763680	49763590	ID=Msa0604290-mRNA-1:exon:11506;Parent=Msa0604290-mRNA-1
chr4_2	exon	49763772	49763861	49763772	ID=Msa0604290-mRNA-1:exon:11507;Parent=Msa0604290-mRNA-1
chr4_2	exon	49765567	49765614	49765567	ID=Msa0604290-mRNA-1:exon:11508;Parent=Msa0604290-mRNA-1
chr4_2	exon	49765927	49765998	49765927	ID=Msa0604290-mRNA-1:exon:11509;Parent=Msa0604290-mRNA-1
chr4_2	exon	49766197	49766296	49766197	ID=Msa0604290-mRNA-1:exon:11510;Parent=Msa0604290-mRNA-1
chr4_2	exon	49766384	49766510	49766384	ID=Msa0604290-mRNA-1:exon:11511;Parent=Msa0604290-mRNA-1
chr4_2	exon	49766601	49767275	49766601	ID=Msa0604290-mRNA-1:exon:11512;Parent=Msa0604290-mRNA-1
chr4_2	five_prime_UTR	49759650	49759825	49759650	ID=Msa0604290-mRNA-1:five_prime_utr;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49759826	49759996	49759826	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49760722	49760846	49760722	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49761360	49761465	49761360	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49761582	49761672	49761582	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49761930	49762102	49761930	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49762405	49762509	49762405	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49762604	49762692	49762604	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49763129	49763236	49763129	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49763590	49763680	49763590	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49763772	49763861	49763772	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49765567	49765614	49765567	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49765927	49765998	49765927	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49766197	49766296	49766197	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49766384	49766510	49766384	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	CDS	49766601	49766859	49766601	ID=Msa0604290-mRNA-1:cds;Parent=Msa0604290-mRNA-1
chr4_2	three_prime_UTR	49766860	49767275	49766860	ID=Msa0604290-mRNA-1:three_prime_utr;Parent=Msa0604290-mRNA-1

Gene Sequence

>Msa0604290

ATGGACTCCGAAGATGATATGCACGATGCTCACGATATGGAGTCCCTTGAAGATGACGATTTCTACAGTGGTGATACGGAAGAAGGTGCGATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACCATATTGAAGGAATCTGATATCCAAGTAAGACAGGAAGATGACATTGATACAGTTGCAGCTGTTCTTTCTGTATCAAAAGTTGCTGCAAGCATACTACTTCGTCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTCCGAAAAGCGGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATACTAGCGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGCTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATACATCAGCACGTCCATCAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGCGCTGCTATTGGTCAAGATATGATTGATTCATTAGCATGTAATGAAGATAAAGAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAATGCAAGCGACCAATCGAAAAAAATCAAGGATGCATGCACATCACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAGAGATACACCCATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGAACAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAGCATGAGGGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAAGAGCTACAGCAATTCCTCAGTGCTGAAGGCCAATCTAAAGAATTCAATGACTTTCGTACAAAATTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCTGATGTAGATGCTAATGGGGCTTCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGTAAGGGGAGAGCTGGGAGAGGAAAGGGAGCTTTGCGATCAAACAGAACTTCTGATGATAGTCACTGGAGCTGCGAACATTGTACCTCTGTGAATGTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA

Protein sequence

>Msa0604290

MDSEDDMHDAHDMESLEDDDFYSGDTEEGAMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIQVRQEDDIDTVAAVLSVSKVAASILLRHHNWSVSKVHDAWFADEERVRKAVGLLEKPVVQHPNTSELTCGICFENYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDSLACNEDKEKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLEQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEGAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSAEGQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGASFSKATSSKNAAGSSKGRAGRGKGALRSNRTSDDSHWSCEHCTSVNVKSATTCQICNQRR*