AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685090 MtrunA17_Chr4g0033361 98.973 584 6 0 1 584 1 584 0.0 1216
Msa0685090 MtrunA17_Chr2g0329221 80.100 598 103 4 1 584 1 596 0.0 967
Msa0685090 MtrunA17_Chr3g0110331 70.990 586 154 6 1 582 1 574 0.0 838
Msa0685090 MtrunA17_Chr3g0110341 69.244 582 149 5 1 582 30 581 0.0 791
Msa0685090 MtrunA17_Chr5g0447801 83.746 283 46 0 254 536 3 285 5.71e-177 502
Msa0685090 MtrunA17_Chr4g0038181 41.841 478 233 9 57 519 2 449 4.52e-128 383
Msa0685090 MtrunA17_Chr4g0034371 29.423 537 336 13 18 529 2 520 5.02e-65 222
Msa0685090 MtrunA17_Chr4g0038201 36.438 365 164 11 38 395 10 313 6.45e-61 205
Msa0685090 MtrunA17_Chr4g0038191 56.667 90 38 1 430 519 2 90 1.62e-26 104
Msa0685090 MtrunA17_Chr5g0434721 25.229 218 121 6 117 329 134 314 4.02e-15 76.6
Msa0685090 MtrunA17_Chr3g0103961 24.359 234 166 7 102 329 20 248 1.18e-13 71.2
Msa0685090 MtrunA17_Chr3g0103941 24.123 228 152 9 124 343 33 247 1.10e-12 68.6
Msa0685090 MtrunA17_Chr2g0301841 25.743 202 140 6 129 325 88 284 4.95e-12 67.0
Msa0685090 MtrunA17_Chr4g0029991 26.190 210 135 7 136 331 306 509 1.25e-11 67.4
Msa0685090 MtrunA17_Chr3g0103931 24.402 209 146 7 127 330 43 244 1.62e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685090 AT2G31510.1 72.887 568 138 5 1 559 1 561 0.0 848
Msa0685090 AT1G65430.1 69.338 574 159 4 18 584 4 567 0.0 823
Msa0685090 AT2G31510.3 76.892 489 109 2 74 559 2 489 0.0 793
Msa0685090 AT2G31510.2 74.206 504 118 3 1 498 1 498 0.0 791
Msa0685090 AT1G05890.1 70.385 520 138 4 20 533 16 525 0.0 769
Msa0685090 AT1G05890.2 73.684 475 122 2 59 533 96 567 0.0 754
Msa0685090 AT2G31770.1 56.673 517 195 8 16 522 3 500 0.0 599
Msa0685090 AT2G31760.1 59.140 465 171 6 57 519 40 487 0.0 582
Msa0685090 AT2G31780.1 55.677 458 179 8 1 451 1 441 0.0 520
Msa0685090 AT1G05880.2 39.407 472 253 8 61 523 40 487 1.06e-107 333
Msa0685090 AT1G05880.1 39.195 472 247 10 61 523 40 480 2.98e-103 321
Msa0685090 AT1G05880.3 38.546 454 246 8 61 505 40 469 1.94e-97 305
Msa0685090 AT4G34370.1 30.490 551 330 18 19 535 2 533 9.93e-68 231
Msa0685090 AT2G16090.1 29.573 585 342 18 19 559 2 560 1.63e-63 219
Msa0685090 AT2G16090.3 30.286 525 313 15 19 516 2 500 1.32e-62 216
Msa0685090 AT2G16090.4 29.016 579 347 16 19 559 2 554 2.37e-62 216
Msa0685090 AT3G27710.1 29.412 476 294 14 62 516 45 499 5.78e-59 206
Msa0685090 AT5G63750.1 29.541 501 297 15 57 519 6 488 2.38e-58 204
Msa0685090 AT2G16090.2 29.672 519 303 15 82 559 3 500 2.43e-58 204
Msa0685090 AT2G16090.5 30.501 459 274 12 82 516 3 440 2.82e-57 200
Msa0685090 AT5G08730.1 27.484 473 307 10 58 523 6 449 4.12e-56 197
Msa0685090 AT5G63730.1 27.190 548 315 18 52 580 4 486 2.58e-50 181
Msa0685090 AT4G34370.2 33.333 378 207 14 187 535 5 366 8.94e-48 173
Msa0685090 AT3G27720.1 32.047 337 190 10 199 516 143 459 8.15e-43 160
Msa0685090 AT5G63760.1 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0685090 AT5G63760.3 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0685090 AT5G63760.2 27.711 498 270 21 113 580 2 439 1.15e-42 159
Msa0685090 AT5G63760.4 28.021 389 207 15 208 580 2 333 1.03e-33 132
Msa0685090 AT5G10370.1 26.693 251 170 9 87 330 1512 1755 6.94e-12 69.3
Msa0685090 AT2G26135.1 26.291 213 139 8 121 325 140 342 1.80e-11 66.6
Msa0685090 AT3G45580.1 29.469 207 124 10 136 329 172 369 2.24e-11 66.6

Find 165 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAGTCCATTGAAGAATT+TGG 0.153603 4_4:-49137579 None:intergenic
CCAGCAAAATTCAAATTTAC+AGG 0.232442 4_4:-49140959 None:intergenic
ATCGACGTTGATTGCAAATC+TGG 0.244897 4_4:-49144574 None:intergenic
AAGGAATAGAAGTTGAAAAT+TGG 0.256098 4_4:-49137421 None:intergenic
CAAGCCCTAGATTCTCGATT+TGG 0.256493 4_4:+49137553 Msa0685090:five_prime_UTR
TCTTCATCGTCTTCACATAT+TGG 0.270709 4_4:-49144689 None:intergenic
TTCGATTGGTCGCTTGCATT+TGG 0.271459 4_4:-49140899 None:intergenic
ATGTGATGATGGTACGTAAA+AGG 0.297606 4_4:-49137452 None:intergenic
GAATTATATACCATATCATT+TGG 0.302570 4_4:+49144951 Msa0685090:three_prime_UTR
GATATCAGATTCCTTCAATA+TGG 0.313478 4_4:-49138475 None:intergenic
TATCTCACCTCGCTAGTATT+AGG 0.330743 4_4:-49139197 None:intergenic
TGGCCCACCGCTCATAATAA+TGG 0.335297 4_4:-49141568 None:intergenic
CCCACTTGTGGCGCTGCTAT+TGG 0.344918 4_4:+49139735 Msa0685090:CDS
GGGAGCAGTAAGGGGAGAGC+TGG 0.349500 4_4:+49144452 Msa0685090:CDS
AGTCATTGAATTCTTTAGAT+TGG 0.359218 4_4:-49144199 None:intergenic
TCGATTGGTCGCTTGCATTT+GGG 0.365336 4_4:-49140898 None:intergenic
ATTACAAATCCCAAATGATA+TGG 0.368424 4_4:-49144961 None:intergenic
TGTCATCTTCCTGTCTTACT+TGG 0.369228 4_4:-49138497 None:intergenic
TTATATACACGAATATATCT+AGG 0.373577 4_4:-49144877 None:intergenic
GTCACAGCTTAAGTTTATTA+CGG 0.378239 4_4:+49143701 Msa0685090:CDS
CCGAAAAGCGGTTGGCTTGT+TGG 0.378590 4_4:+49139154 Msa0685090:CDS
TATGCACGATGCTCACGATA+TGG 0.384878 4_4:+49137608 Msa0685090:CDS
TACTACTTCGTCACCACAAT+TGG 0.386991 4_4:+49138568 Msa0685090:CDS
GGGAGAGCTGGGAGAGGAAA+GGG 0.387635 4_4:+49144464 Msa0685090:CDS
CGTGTATATAAATAACCTTA+TGG 0.392253 4_4:+49144889 Msa0685090:three_prime_UTR
GGATCCCAAATCGAGAATCT+AGG 0.392687 4_4:-49137558 None:intergenic
TTATATCGAAGACAATAAAA+AGG 0.396653 4_4:+49139827 Msa0685090:CDS
AATTATATACCATATCATTT+GGG 0.399795 4_4:+49144952 Msa0685090:three_prime_UTR
ATCCATACTGTTTCTCATGC+TGG 0.403926 4_4:+49139392 Msa0685090:CDS
GTATTAGGATGCTGGACAAC+TGG 0.406004 4_4:-49139182 None:intergenic
AACTATCCTCGCTCTGGGAT+TGG 0.407143 4_4:+49139352 Msa0685090:CDS
AAGCCCTAGATTCTCGATTT+GGG 0.408853 4_4:+49137554 Msa0685090:five_prime_UTR
GACTTTCGTACAAAATTAGC+TGG 0.416189 4_4:+49144218 Msa0685090:CDS
GCAGCGCCACAAGTGGGTTC+AGG 0.416212 4_4:-49139729 None:intergenic
TTGGGATCCAAATTCTTCAA+TGG 0.417203 4_4:+49137572 Msa0685090:exon
TCCCAGCATGAGAAACAGTA+TGG 0.418225 4_4:-49139394 None:intergenic
GGGTTCTTCTCATTATATGC+TGG 0.420860 4_4:+49144664 Msa0685090:three_prime_UTR
ACTGCACCAAAGGCTGAGAT+TGG 0.427723 4_4:+49144643 Msa0685090:three_prime_UTR
AACAAATTCAGCTGAGTGAT+AGG 0.433492 4_4:-49144743 None:intergenic
TTTGAAAACTATCCTCGCTC+TGG 0.436202 4_4:+49139346 Msa0685090:CDS
TATCCGATGTAGATGCTAAC+GGG 0.436487 4_4:+49144390 Msa0685090:CDS
GGGGAGAGCTGGGAGAGGAA+AGG 0.438486 4_4:+49144463 Msa0685090:CDS
TTAGTGAGGGCTTTAGAGAA+TGG 0.439616 4_4:+49144365 Msa0685090:CDS
TATATAAATAACCTTATGGT+TGG 0.440179 4_4:+49144893 Msa0685090:three_prime_UTR
GGCCCACCGCTCATAATAAT+GGG 0.441437 4_4:-49141567 None:intergenic
TAAAATGTAACCCAACCATA+AGG 0.442051 4_4:-49144904 None:intergenic
CTGAAATGGACGTATGCATA+TGG 0.442573 4_4:+49143957 Msa0685090:CDS
AAGAACCCAATCTCAGCCTT+TGG 0.445930 4_4:-49144649 None:intergenic
TACTGAAAGAAGAAGGGAAA+TGG 0.451324 4_4:+49141520 Msa0685090:CDS
GGTCGCTTGCATTTGGGACA+TGG 0.453953 4_4:-49140892 None:intergenic
TGTAGAAATCGTCATCTTCA+AGG 0.456356 4_4:-49137635 None:intergenic
CACTGGACGATGAGCCTCCT+CGG 0.458483 4_4:-49140352 None:intergenic
ATGATGATACTGAAAGAAGA+AGG 0.463836 4_4:+49141513 Msa0685090:CDS
GGAGCAGTAAGGGGAGAGCT+GGG 0.464600 4_4:+49144453 Msa0685090:CDS
ACATCCAGGACCATCATTGA+TGG 0.478158 4_4:-49139691 None:intergenic
AGCAGCTAAGCAAGAGGGAG+TGG 0.478756 4_4:+49141399 Msa0685090:CDS
TCCATACTGTTTCTCATGCT+GGG 0.479243 4_4:+49139393 Msa0685090:CDS
AGTGTAGGAGAGTGCTGAAA+TGG 0.479640 4_4:+49143943 Msa0685090:CDS
ATAAGATCTACGAAGGTAAC+GGG 0.483111 4_4:-49139808 None:intergenic
ATCTAGGGCTTGAGAAATTG+AGG 0.492539 4_4:-49137542 None:intergenic
TCAAAGTGGTGTCCTGCCCC+TGG 0.492940 4_4:+49140151 Msa0685090:CDS
CAGAGTCTGAAAACATGAAC+TGG 0.493565 4_4:+49140415 Msa0685090:CDS
GATACATACAGATTGGTTGC+TGG 0.496836 4_4:-49141588 None:intergenic
ATCTGATATCCAAGTAAGAC+AGG 0.497385 4_4:+49138488 Msa0685090:CDS
AGGTGAAGCAGAATCTGGTC+TGG 0.499622 4_4:+49144121 Msa0685090:intron
TATTACGGAGGCCTGGCTGC+AGG 0.501896 4_4:+49143716 Msa0685090:CDS
TCAACAAGATAGTTGACAAA+AGG 0.502770 4_4:-49144985 None:intergenic
ACCAATAGCAGCGCCACAAG+TGG 0.504223 4_4:-49139736 None:intergenic
ATAAACTTAAGCTGTGACTC+AGG 0.505087 4_4:-49143696 None:intergenic
GGAAATGGCGAAGAATTCAT+TGG 0.506032 4_4:+49141535 Msa0685090:CDS
GAAACACTTGTTACGGTGCG+TGG 0.510936 4_4:+49144618 Msa0685090:three_prime_UTR
TACTGTTTCTCATGCTGGGA+AGG 0.514636 4_4:+49139397 Msa0685090:CDS
ATATAAATAACCTTATGGTT+GGG 0.517339 4_4:+49144894 Msa0685090:three_prime_UTR
AAGTTGAAAATTGGAAGATA+AGG 0.517922 4_4:-49137412 None:intergenic
GAAATTGAATTTACCAATTG+TGG 0.519364 4_4:-49138581 None:intergenic
TATCCACATAGGTTATGCCT+TGG 0.520190 4_4:+49141319 Msa0685090:intron
AATCTCAGCCTTTGGTGCAG+TGG 0.521654 4_4:-49144641 None:intergenic
AAATGCTGCAGGGAGCAGTA+AGG 0.522523 4_4:+49144442 Msa0685090:CDS
CCTCGCTAGTATTAGGATGC+TGG 0.523850 4_4:-49139190 None:intergenic
AGCATCGTGCATATCATCTT+CGG 0.523950 4_4:-49137598 None:intergenic
CGATTTCTACAGTGGTGATA+CGG 0.524021 4_4:+49137647 Msa0685090:CDS
TTGAAAACTATCCTCGCTCT+GGG 0.528875 4_4:+49139347 Msa0685090:CDS
CTGCACCAAAGGCTGAGATT+GGG 0.530403 4_4:+49144644 Msa0685090:three_prime_UTR
TCCGTTAGAAACACTTGTTA+CGG 0.532432 4_4:+49144611 Msa0685090:three_prime_UTR
ACCACAGTGCCACAGTCCAC+TGG 0.533681 4_4:-49140369 None:intergenic
TTAAGTTTATTACGGAGGCC+TGG 0.533852 4_4:+49143709 Msa0685090:CDS
TACGTAAAAGGAAAGAAGAA+AGG 0.534295 4_4:-49137440 None:intergenic
GTGCGTGGCCACTGCACCAA+AGG 0.538093 4_4:+49144633 Msa0685090:three_prime_UTR
GATCCCAAATCGAGAATCTA+GGG 0.539031 4_4:-49137557 None:intergenic
CAGCAATTCCTCAGTGCTGA+AGG 0.541611 4_4:+49144176 Msa0685090:CDS
CAAAATTAGCTGGATTGACT+AGG 0.541759 4_4:+49144228 Msa0685090:CDS
ACGTCCATCAATGATGGTCC+TGG 0.548432 4_4:+49139687 Msa0685090:CDS
TGAGCTCGTTGCTTTGCTGA+AGG 0.552429 4_4:-49144417 None:intergenic
ATCAGCACGTCCATCAATGA+TGG 0.552763 4_4:+49139681 Msa0685090:CDS
CAAATCATTTACCTGCAGCC+AGG 0.554241 4_4:-49143727 None:intergenic
ATAGGTTATGCCTTGGTGCA+TGG 0.554256 4_4:+49141326 Msa0685090:intron
TGATGATACTGAAAGAAGAA+GGG 0.556998 4_4:+49141514 Msa0685090:CDS
TACAGTGGTGATACGGAAGA+AGG 0.559004 4_4:+49137654 Msa0685090:CDS
AATGCTGCAGGGAGCAGTAA+GGG 0.560155 4_4:+49144443 Msa0685090:CDS
ACTTAAGCTGTGACTCAGGT+TGG 0.561742 4_4:-49143692 None:intergenic
GAACTTCTGATGATAGTCAC+TGG 0.562651 4_4:+49144504 Msa0685090:CDS
CAGTTCTTTGAGTATTTGCA+AGG 0.563576 4_4:+49144014 Msa0685090:CDS
AATCAACGTCGATGAAAATG+TGG 0.565537 4_4:+49144584 Msa0685090:exon
CTACTTCGAGAATTTAGTGA+GGG 0.566132 4_4:+49144352 Msa0685090:CDS
AGTAAGGGGAGAGCTGGGAG+AGG 0.566304 4_4:+49144458 Msa0685090:CDS
TGCTGTGGCCAGCTTACATG+TGG 0.566414 4_4:+49139316 Msa0685090:intron
TCTTCCAGATAGTTGAGTGT+AGG 0.573883 4_4:+49143928 Msa0685090:intron
GCATATTCACAACCAGGGGC+AGG 0.573937 4_4:-49140163 None:intergenic
CTATCCGATGTAGATGCTAA+CGG 0.574691 4_4:+49144389 Msa0685090:CDS
CAGCAAAATTCAAATTTACA+GGG 0.574826 4_4:-49140958 None:intergenic
TGTTGTAACATAATAGATGC+TGG 0.575149 4_4:+49144799 Msa0685090:three_prime_UTR
TCAGACCATGGTGAAAGAAC+TGG 0.575256 4_4:+49141349 Msa0685090:CDS
GGGATTGGAATGGCTTCTTG+TGG 0.575363 4_4:+49139367 Msa0685090:CDS
AGTGATTATGATGATGATGC+TGG 0.577389 4_4:+49137693 Msa0685090:CDS
TCCTCGCTCTGGGATTGGAA+TGG 0.579366 4_4:+49139357 Msa0685090:CDS
GTAGAAATCGTCATCTTCAA+GGG 0.579796 4_4:-49137634 None:intergenic
AAATTCAGCTGAGTGATAGG+AGG 0.580861 4_4:-49144740 None:intergenic
ACTGTGGCACTGTGGTAAAG+TGG 0.587937 4_4:+49140376 Msa0685090:CDS
ACACCCATTATTATGAGCGG+TGG 0.591402 4_4:+49141564 Msa0685090:CDS
TATAAGATCTACGAAGGTAA+CGG 0.591928 4_4:-49139809 None:intergenic
GAGCGAGTCCGAAAAGCGGT+TGG 0.598853 4_4:+49139146 Msa0685090:CDS
CATCTCAACATCAAACATCC+AGG 0.599803 4_4:-49139705 None:intergenic
CCAATAGCAGCGCCACAAGT+GGG 0.601504 4_4:-49139735 None:intergenic
AATTCAGCTGAGTGATAGGA+GGG 0.602797 4_4:-49144739 None:intergenic
GTACTATTTACCTGAGCATG+AGG 0.605750 4_4:+49143980 Msa0685090:CDS
ATGCTGCAGGGAGCAGTAAG+GGG 0.605774 4_4:+49144444 Msa0685090:CDS
CACCCATTATTATGAGCGGT+GGG 0.609091 4_4:+49141565 Msa0685090:CDS
TGAAATGGACGTATGCATAT+GGG 0.610291 4_4:+49143958 Msa0685090:CDS
AGATGTCCTGAACCCACTTG+TGG 0.620859 4_4:+49139723 Msa0685090:CDS
CAAAATTCAAATTTACAGGG+TGG 0.621414 4_4:-49140955 None:intergenic
TTATGAAGCAGCTAAGCAAG+AGG 0.623330 4_4:+49141393 Msa0685090:CDS
CGAGGAGGCTCATCGTCCAG+TGG 0.625879 4_4:+49140353 Msa0685090:CDS
TGATACGGAAGAAGGTGCGA+TGG 0.632626 4_4:+49137662 Msa0685090:CDS
GAAGATGACGATTTCTACAG+TGG 0.633360 4_4:+49137639 Msa0685090:CDS
TATGAAGCAGCTAAGCAAGA+GGG 0.635282 4_4:+49141394 Msa0685090:CDS
TGAAGAGCGAGTCCGAAAAG+CGG 0.637498 4_4:+49139142 Msa0685090:CDS
ATCAACGTCGATGAAAATGT+GGG 0.639035 4_4:+49144585 Msa0685090:exon
GATTGAGTCTCGTCGACCTG+AGG 0.639074 4_4:+49137740 Msa0685090:CDS
GCCATTCCAATCCCAGAGCG+AGG 0.643551 4_4:-49139358 None:intergenic
GACCATGGTGAAAGAACTGG+TGG 0.643713 4_4:+49141352 Msa0685090:CDS
ACAGCTTAAGTTTATTACGG+AGG 0.646409 4_4:+49143704 Msa0685090:CDS
CTTCGATATAAGATCTACGA+AGG 0.648378 4_4:-49139815 None:intergenic
GCTCATCGTCCAGTGGACTG+TGG 0.650054 4_4:+49140360 Msa0685090:CDS
TACTATTTACCTGAGCATGA+GGG 0.652156 4_4:+49143981 Msa0685090:CDS
ACTACTTCGAGAATTTAGTG+AGG 0.655176 4_4:+49144351 Msa0685090:CDS
GTAACTGCATATTCACAACC+AGG 0.655441 4_4:-49140169 None:intergenic
AACAAAAGCTATACGAACAG+AGG 0.655471 4_4:-49140228 None:intergenic
AACTGCATATTCACAACCAG+GGG 0.659172 4_4:-49140167 None:intergenic
ATTGCAAATCTGGCATGTGG+TGG 0.660392 4_4:-49144564 None:intergenic
ACCGTAACAAGTGTTTCTAA+CGG 0.660392 4_4:-49144612 None:intergenic
AACCACCAGTTCTTTCACCA+TGG 0.660461 4_4:-49141354 None:intergenic
TCAGTAAAGTGCATGATGCA+TGG 0.665829 4_4:+49139111 Msa0685090:CDS
TAACTGCATATTCACAACCA+GGG 0.669788 4_4:-49140168 None:intergenic
TAGATTGGCCTTCAGCACTG+AGG 0.685503 4_4:-49144184 None:intergenic
GATACACCCATTATTATGAG+CGG 0.686220 4_4:+49141561 Msa0685090:CDS
TTGATTGCAAATCTGGCATG+TGG 0.691443 4_4:-49144567 None:intergenic
CCAGCATCCTAATACTAGCG+AGG 0.692364 4_4:+49139190 Msa0685090:CDS
GAATCTACAGTGCACCGAGG+AGG 0.695123 4_4:+49140338 Msa0685090:intron
AGCCCCGTTAGCATCTACAT+CGG 0.697364 4_4:-49144393 None:intergenic
CATGGTCTGACCATGCACCA+AGG 0.699416 4_4:-49141336 None:intergenic
CTTGGTGCATGGTCAGACCA+TGG 0.701151 4_4:+49141337 Msa0685090:CDS
ATCCGATGTAGATGCTAACG+GGG 0.717867 4_4:+49144391 Msa0685090:CDS
TCCAGTGGACTGTGGCACTG+TGG 0.734400 4_4:+49140368 Msa0685090:CDS
GGCAGATTTGACATTCACAG+AGG 0.749917 4_4:-49144543 None:intergenic
ACTGAATCTACAGTGCACCG+AGG 0.790165 4_4:+49140335 Msa0685090:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTCTCTATATAATTTTT+TGG + chr4_4:49139283-49139302 Msa0685090:intron 10.0%
!!! TAAGAATTTTATAAATGAAA+TGG + chr4_4:49140638-49140657 Msa0685090:intron 10.0%
!!! TTTTGAACAATTATTTTTTT+GGG + chr4_4:49141234-49141253 Msa0685090:intron 10.0%
!! AATTAGATTTAGATAATATA+AGG - chr4_4:49142666-49142685 None:intergenic 10.0%
!!! ATTTGATGATAATTATTTAT+AGG - chr4_4:49142778-49142797 None:intergenic 10.0%
!! ATAAAATAAAAATGTGATGA+TGG - chr4_4:49137466-49137485 None:intergenic 15.0%
!!! GTTTTTTGTTTTTTTTTGTT+TGG + chr4_4:49137923-49137942 Msa0685090:intron 15.0%
!!! TAATGTTGTTTATATGAATT+TGG + chr4_4:49137999-49138018 Msa0685090:intron 15.0%
!! AAAAAAAACATATTCAAAAC+AGG - chr4_4:49138612-49138631 None:intergenic 15.0%
!!! TACAAAACATAATCAATTTT+AGG - chr4_4:49138638-49138657 None:intergenic 15.0%
!!! AAATTGATTATGTTTTGTAA+AGG + chr4_4:49138639-49138658 Msa0685090:intron 15.0%
!!! AAAAAAAAAGTGTTTTTGTA+TGG + chr4_4:49138926-49138945 Msa0685090:intron 15.0%
!! ATAAATATAACATATGAAAC+AGG - chr4_4:49139579-49139598 None:intergenic 15.0%
!! AATATATCTAATGTCTTAAA+CGG + chr4_4:49140515-49140534 Msa0685090:intron 15.0%
!! ATTTGATTAAAAAACATGTT+GGG - chr4_4:49141007-49141026 None:intergenic 15.0%
!! AATTTGATTAAAAAACATGT+TGG - chr4_4:49141008-49141027 None:intergenic 15.0%
!! TAGTTTATATAACATAGAAA+AGG + chr4_4:49141171-49141190 Msa0685090:intron 15.0%
!! CAAAAAAATAATTGTTCAAA+AGG - chr4_4:49141235-49141254 None:intergenic 15.0%
!!! CTTTTGAACAATTATTTTTT+TGG + chr4_4:49141233-49141252 Msa0685090:intron 15.0%
!!! TTTGAACAATTATTTTTTTG+GGG + chr4_4:49141235-49141254 Msa0685090:intron 15.0%
!!! AAATCAATTTAGTTTTACAT+GGG - chr4_4:49142567-49142586 None:intergenic 15.0%
!!! AAAATCAATTTAGTTTTACA+TGG - chr4_4:49142568-49142587 None:intergenic 15.0%
!!! TATTTTTATGATCTTTATGT+TGG + chr4_4:49143820-49143839 Msa0685090:intron 15.0%
!!! CATTTTAAAAAATCATGATA+AGG + chr4_4:49144920-49144939 Msa0685090:three_prime_UTR 15.0%
!! AATTATATACCATATCATTT+GGG + chr4_4:49144952-49144971 Msa0685090:three_prime_UTR 15.0%
!!! TAATGTTGTTTATGTGAATT+TGG + chr4_4:49137857-49137876 Msa0685090:intron 20.0%
!! TACAGAATTTATGAAATGTT+TGG + chr4_4:49138044-49138063 Msa0685090:intron 20.0%
!!! AAAAAAAACAAGCTTTTGTT+TGG - chr4_4:49138132-49138151 None:intergenic 20.0%
!!! TCACTAAATCAATCTTTTTA+AGG - chr4_4:49138162-49138181 None:intergenic 20.0%
!!! TAGATTCTGTTTTTTTTTGT+AGG + chr4_4:49138258-49138277 Msa0685090:intron 20.0%
!! AAATGAATATGATTCAAATG+AGG + chr4_4:49138804-49138823 Msa0685090:intron 20.0%
!!! TGTTAATTCTGATCAAATTT+TGG + chr4_4:49139450-49139469 Msa0685090:intron 20.0%
!!! ATATGTCCTTTTTATTGTTT+TGG + chr4_4:49139486-49139505 Msa0685090:intron 20.0%
!!! TATGTCCTTTTTATTGTTTT+GGG + chr4_4:49139487-49139506 Msa0685090:intron 20.0%
!! TTATATCGAAGACAATAAAA+AGG + chr4_4:49139827-49139846 Msa0685090:CDS 20.0%
!! CAAAAGAAGTAAAAAAAATG+AGG - chr4_4:49140120-49140139 None:intergenic 20.0%
!! AAATTCTTATAAATGAAGTG+AGG - chr4_4:49140627-49140646 None:intergenic 20.0%
!! ATCAATAATTTATAGTTGCT+AGG + chr4_4:49141681-49141700 Msa0685090:intron 20.0%
!!! CTAATATTTTGATAGCTAAA+TGG + chr4_4:49141708-49141727 Msa0685090:intron 20.0%
!!! AGATAAGACTTTTTTTTTAG+TGG - chr4_4:49142145-49142164 None:intergenic 20.0%
!!! CTAAAAAAAAAGTCTTATCT+CGG + chr4_4:49142145-49142164 Msa0685090:intron 20.0%
!! ATGTATATAATTGATGTGAA+AGG - chr4_4:49142472-49142491 None:intergenic 20.0%
!! CATCAATTATATACATGTAT+AGG + chr4_4:49142476-49142495 Msa0685090:intron 20.0%
!!! AATCAATTTAGTTTTACATG+GGG - chr4_4:49142566-49142585 None:intergenic 20.0%
!! TATCGAATAAGTATTAAACT+CGG - chr4_4:49142625-49142644 None:intergenic 20.0%
!! TATCTAAATCTCAGAATATT+TGG + chr4_4:49142692-49142711 Msa0685090:intron 20.0%
!!! TGAATTTTAATACATTGTCA+AGG + chr4_4:49142897-49142916 Msa0685090:intron 20.0%
!! ACTATAAAGTATAAACTAAC+CGG - chr4_4:49143091-49143110 None:intergenic 20.0%
!!! CAGTTTAAAATATAGAATCA+AGG - chr4_4:49143143-49143162 None:intergenic 20.0%
!! AGCTACAATACAAAATTAAA+AGG - chr4_4:49143389-49143408 None:intergenic 20.0%
!! AAAAAAAATCTAACTAGCAA+GGG - chr4_4:49143555-49143574 None:intergenic 20.0%
!!! TAATTAGAAACATGTGTTTT+TGG + chr4_4:49144058-49144077 Msa0685090:intron 20.0%
!! TATAGTTGAGTATTAATCAT+GGG - chr4_4:49144091-49144110 None:intergenic 20.0%
!! ATATAGTTGAGTATTAATCA+TGG - chr4_4:49144092-49144111 None:intergenic 20.0%
!!! TATTCTTAATTTTGATTTCC+TGG + chr4_4:49144302-49144321 Msa0685090:intron 20.0%
!!! TGTTGTTTATTTTCTGTTAT+AGG + chr4_4:49144762-49144781 Msa0685090:three_prime_UTR 20.0%
!! TTATATACACGAATATATCT+AGG - chr4_4:49144880-49144899 None:intergenic 20.0%
!! TATATAAATAACCTTATGGT+TGG + chr4_4:49144893-49144912 Msa0685090:three_prime_UTR 20.0%
!! ATATAAATAACCTTATGGTT+GGG + chr4_4:49144894-49144913 Msa0685090:three_prime_UTR 20.0%
!! GAATTATATACCATATCATT+TGG + chr4_4:49144951-49144970 Msa0685090:three_prime_UTR 20.0%
! AAGGAATAGAAGTTGAAAAT+TGG - chr4_4:49137424-49137443 None:intergenic 25.0%
! AGTTATGTGTAACAGAATTT+AGG + chr4_4:49137892-49137911 Msa0685090:intron 25.0%
!!! TTTTGTTTGGTTTTTTGATC+AGG + chr4_4:49137936-49137955 Msa0685090:intron 25.0%
! AAAAACATGTTCAGAAAATG+TGG - chr4_4:49137976-49137995 None:intergenic 25.0%
!! TTTGGTTTCTTGAAATTACT+TGG + chr4_4:49138017-49138036 Msa0685090:intron 25.0%
! TTGGTTTCTTGAAATTACTT+GGG + chr4_4:49138018-49138037 Msa0685090:intron 25.0%
!! AAGATTGATTTAGTGATTAG+TGG + chr4_4:49138166-49138185 Msa0685090:intron 25.0%
!!! AGATAAGATGTTGGTTTTAA+TGG + chr4_4:49138234-49138253 Msa0685090:intron 25.0%
!!! ATTCTGTTTTTTTTTGTAGG+TGG + chr4_4:49138261-49138280 Msa0685090:intron 25.0%
!!! AACTGTGTTTGTTTTTTTGT+TGG + chr4_4:49138335-49138354 Msa0685090:intron 25.0%
!!! GTTTTTTTGTTGGTTTTGAA+TGG + chr4_4:49138345-49138364 Msa0685090:intron 25.0%
!! GCAAAATTTTACCATATTGA+AGG + chr4_4:49138464-49138483 Msa0685090:intron 25.0%
! GAAATTGAATTTACCAATTG+TGG - chr4_4:49138584-49138603 None:intergenic 25.0%
!! TGAAGTCTTTTAAACCTTAT+TGG + chr4_4:49138871-49138890 Msa0685090:intron 25.0%
! GAAACAAATATCAACCAATA+AGG - chr4_4:49138888-49138907 None:intergenic 25.0%
! GAAAGTTAAAACACTAAAGA+AGG - chr4_4:49138963-49138982 None:intergenic 25.0%
! TCAGAATTAACAAAAGAAGA+GGG - chr4_4:49139442-49139461 None:intergenic 25.0%
! ATCAGAATTAACAAAAGAAG+AGG - chr4_4:49139443-49139462 None:intergenic 25.0%
! TATCACCCAAAACAATAAAA+AGG - chr4_4:49139495-49139514 None:intergenic 25.0%
! AAAAAACTTAAGATGGGTAT+AGG - chr4_4:49139542-49139561 None:intergenic 25.0%
!!! TATACCCATCTTAAGTTTTT+TGG + chr4_4:49139541-49139560 Msa0685090:intron 25.0%
!!! AAGTTTTTTGGTAGCTTTTA+TGG + chr4_4:49139553-49139572 Msa0685090:intron 25.0%
! AAAGAACAAAAAAGAACTGA+AGG - chr4_4:49139621-49139640 None:intergenic 25.0%
!!! TGACATTTTTTTGTCCTTTT+CGG + chr4_4:49139645-49139664 Msa0685090:intron 25.0%
! TTGACATATTTATTATGTCC+TGG + chr4_4:49139966-49139985 Msa0685090:intron 25.0%
! GGAATTGTTTCCAATTATTA+CGG + chr4_4:49140268-49140287 Msa0685090:intron 25.0%
! AAATCCAATACCGTAATAAT+TGG - chr4_4:49140281-49140300 None:intergenic 25.0%
! TCAACTTAAGCATGAAAATA+TGG - chr4_4:49140576-49140595 None:intergenic 25.0%
! AGTTATAGTCCAAACATAAA+GGG - chr4_4:49140681-49140700 None:intergenic 25.0%
! AAGTTATAGTCCAAACATAA+AGG - chr4_4:49140682-49140701 None:intergenic 25.0%
!! AATAATCCATGGACTATATT+AGG + chr4_4:49140715-49140734 Msa0685090:intron 25.0%
!!! ATGAATAAATTGCTGCTTTT+TGG + chr4_4:49140800-49140819 Msa0685090:intron 25.0%
! AATTAAATTAACAGTCAGCT+CGG - chr4_4:49140845-49140864 None:intergenic 25.0%
! CTGTTAATTTAATTACTTGC+AGG + chr4_4:49140851-49140870 Msa0685090:intron 25.0%
! CAGCAAAATTCAAATTTACA+GGG - chr4_4:49140961-49140980 None:intergenic 25.0%
! TATATTGCATTCTATGTTCT+TGG + chr4_4:49141027-49141046 Msa0685090:intron 25.0%
! TTTCAAGAAAGTTACAAGTA+TGG + chr4_4:49141092-49141111 Msa0685090:intron 25.0%
! TTCAAGAAAGTTACAAGTAT+GGG + chr4_4:49141093-49141112 Msa0685090:intron 25.0%
!! TTGATACATTTTATCCACAT+AGG + chr4_4:49141308-49141327 Msa0685090:intron 25.0%
! AAGTTTATTATTTCGTTGCA+TGG + chr4_4:49141739-49141758 Msa0685090:intron 25.0%
!!! CTTATGTATTTTTTGTTCAC+TGG + chr4_4:49141785-49141804 Msa0685090:intron 25.0%
!! TCATAAAAGCTTAAGTTGTT+AGG - chr4_4:49141848-49141867 None:intergenic 25.0%
!! TGCACAAACATAAAATTTTG+CGG - chr4_4:49142171-49142190 None:intergenic 25.0%
! TTAACCATATAATCCACATA+GGG - chr4_4:49142269-49142288 None:intergenic 25.0%
!! GAAGATTTTTCTATAACTAG+AGG - chr4_4:49142357-49142376 None:intergenic 25.0%
! TGTGAAAGGAAAAATAATGA+TGG - chr4_4:49142458-49142477 None:intergenic 25.0%
! TTTATGTGATGTGAATATCT+TGG + chr4_4:49142585-49142604 Msa0685090:intron 25.0%
! TTCGATATATGTTTATCATG+TGG + chr4_4:49142638-49142657 Msa0685090:intron 25.0%
! AGCTAAACTTAATGCTAAAT+TGG - chr4_4:49142740-49142759 None:intergenic 25.0%
! TGTTGAATGATTGACTAATA+AGG + chr4_4:49142998-49143017 Msa0685090:intron 25.0%
! TTTGAATATGCAAACTTACA+TGG + chr4_4:49143052-49143071 Msa0685090:intron 25.0%
! ATAAGCTACTATTGTAGAAA+TGG - chr4_4:49143529-49143548 None:intergenic 25.0%
! CAAAAAAAATCTAACTAGCA+AGG - chr4_4:49143556-49143575 None:intergenic 25.0%
! GAAATGAACTTCAGAAATTA+TGG - chr4_4:49143868-49143887 None:intergenic 25.0%
!!! AATTTCTGAAGTTCATTTCA+AGG + chr4_4:49143869-49143888 Msa0685090:intron 25.0%
! ATAGTTGAGTATTAATCATG+GGG - chr4_4:49144090-49144109 None:intergenic 25.0%
!!! CTCAACTATATTTTGTTTTC+AGG + chr4_4:49144101-49144120 Msa0685090:intron 25.0%
! AGTCATTGAATTCTTTAGAT+TGG - chr4_4:49144202-49144221 None:intergenic 25.0%
! CGTGTATATAAATAACCTTA+TGG + chr4_4:49144889-49144908 Msa0685090:three_prime_UTR 25.0%
! ATTACAAATCCCAAATGATA+TGG - chr4_4:49144964-49144983 None:intergenic 25.0%
TACGTAAAAGGAAAGAAGAA+AGG - chr4_4:49137443-49137462 None:intergenic 30.0%
GAGAAATTGATATATACCTC+AGG - chr4_4:49137759-49137778 None:intergenic 30.0%
! TTGTTTGGTTTCAGAAAATG+TGG - chr4_4:49138117-49138136 None:intergenic 30.0%
! ATTGATTTAGTGATTAGTGG+TGG + chr4_4:49138169-49138188 Msa0685090:intron 30.0%
AGGTTAATTGCAGTAATTGT+TGG + chr4_4:49138199-49138218 Msa0685090:intron 30.0%
GCTATAATGAGATAAGATGT+TGG + chr4_4:49138225-49138244 Msa0685090:intron 30.0%
AACCAAACTAATCAGTTACA+CGG - chr4_4:49138436-49138455 None:intergenic 30.0%
GATATCAGATTCCTTCAATA+TGG - chr4_4:49138478-49138497 None:intergenic 30.0%
!!! ATGTGTTTTAGTCCTCATAA+AGG + chr4_4:49138737-49138756 Msa0685090:intron 30.0%
TTAGACTTTAGTCCTTTATG+AGG - chr4_4:49138752-49138771 None:intergenic 30.0%
CAGAATTAACAAAAGAAGAG+GGG - chr4_4:49139441-49139460 None:intergenic 30.0%
GCTACCAAAAAACTTAAGAT+GGG - chr4_4:49139548-49139567 None:intergenic 30.0%
AGCTACCAAAAAACTTAAGA+TGG - chr4_4:49139549-49139568 None:intergenic 30.0%
ACAAAAAAGAACTGAAGGAA+AGG - chr4_4:49139616-49139635 None:intergenic 30.0%
TATAAGATCTACGAAGGTAA+CGG - chr4_4:49139812-49139831 None:intergenic 30.0%
TGGATAACATATAGTCTACA+TGG - chr4_4:49139895-49139914 None:intergenic 30.0%
CGCATGATGAAAATGAAATA+TGG - chr4_4:49139915-49139934 None:intergenic 30.0%
TTGATTGAGAAAAGTAGTGA+AGG - chr4_4:49140046-49140065 None:intergenic 30.0%
!!! TTGTTTTTGTCTAGTCAAAG+TGG + chr4_4:49140137-49140156 Msa0685090:intron 30.0%
GTTTCCAATTATTACGGTAT+TGG + chr4_4:49140274-49140293 Msa0685090:intron 30.0%
ATGTCTTAAACGGATACTAA+TGG + chr4_4:49140525-49140544 Msa0685090:intron 30.0%
!! ACTAATGGAGAGTATTTAAG+CGG + chr4_4:49140540-49140559 Msa0685090:intron 30.0%
!!! TTTTCATGCTTAAGTTGAAG+TGG + chr4_4:49140578-49140597 Msa0685090:intron 30.0%
TAGAATCCTAATATAGTCCA+TGG - chr4_4:49140724-49140743 None:intergenic 30.0%
ATTAAATTAACAGTCAGCTC+GGG - chr4_4:49140844-49140863 None:intergenic 30.0%
!!! CATCCTTGATTTTTTTCGAT+TGG - chr4_4:49140916-49140935 None:intergenic 30.0%
CAAAATTCAAATTTACAGGG+TGG - chr4_4:49140958-49140977 None:intergenic 30.0%
CCAGCAAAATTCAAATTTAC+AGG - chr4_4:49140962-49140981 None:intergenic 30.0%
! CCTGTAAATTTGAATTTTGC+TGG + chr4_4:49140959-49140978 Msa0685090:CDS 30.0%
AGTTACAAGTATGGGTATAT+TGG + chr4_4:49141101-49141120 Msa0685090:intron 30.0%
! GAACAAACTTTTCTTGATTC+AGG + chr4_4:49141437-49141456 Msa0685090:intron 30.0%
ATGATGATACTGAAAGAAGA+AGG + chr4_4:49141513-49141532 Msa0685090:CDS 30.0%
TGATGATACTGAAAGAAGAA+GGG + chr4_4:49141514-49141533 Msa0685090:CDS 30.0%
ATAGAGTGATACATACAGAT+TGG - chr4_4:49141598-49141617 None:intergenic 30.0%
TCACTCTATACTTACTTGTT+CGG + chr4_4:49141609-49141628 Msa0685090:intron 30.0%
!! GAAAGTACATCTATGGTTTT+CGG - chr4_4:49141824-49141843 None:intergenic 30.0%
TTTCTTTGGTCTCTCTTAAA+AGG + chr4_4:49142055-49142074 Msa0685090:intron 30.0%
! ATTTTCCTTTTGAACTTGAG+TGG + chr4_4:49142195-49142214 Msa0685090:intron 30.0%
GTTAACCATATAATCCACAT+AGG - chr4_4:49142270-49142289 None:intergenic 30.0%
!!! TTATCTTTTAGTCTTGGTTC+TGG - chr4_4:49142309-49142328 None:intergenic 30.0%
AGAACCAAGACTAAAAGATA+AGG + chr4_4:49142308-49142327 Msa0685090:intron 30.0%
! TTTTTCTATAACTAGAGGTG+TGG - chr4_4:49142352-49142371 None:intergenic 30.0%
!! CTAAGAAAGGTGTTATGATT+GGG - chr4_4:49142431-49142450 None:intergenic 30.0%
AGATTGATGGAAAGATATCA+GGG - chr4_4:49142514-49142533 None:intergenic 30.0%
AAGATTGATGGAAAGATATC+AGG - chr4_4:49142515-49142534 None:intergenic 30.0%
CTACTTACTACAAAGATTGA+TGG - chr4_4:49142527-49142546 None:intergenic 30.0%
!! TATTCTGAGATTTAGATAGC+AGG - chr4_4:49142690-49142709 None:intergenic 30.0%
AGAATCAAACTTTATACCAC+AGG - chr4_4:49142849-49142868 None:intergenic 30.0%
TCAATCATTCAACATAGTCA+AGG - chr4_4:49142992-49143011 None:intergenic 30.0%
ATATGCAAACTTACATGGAA+TGG + chr4_4:49143057-49143076 Msa0685090:intron 30.0%
AGTGATTTCTTTCTTGATTG+AGG + chr4_4:49143108-49143127 Msa0685090:intron 30.0%
!! TGTATTTTGTGTTACTACTC+TGG + chr4_4:49143161-49143180 Msa0685090:intron 30.0%
CAATACAAAATTAAAAGGCC+AGG - chr4_4:49143384-49143403 None:intergenic 30.0%
GTCACAGCTTAAGTTTATTA+CGG + chr4_4:49143701-49143720 Msa0685090:CDS 30.0%
TCATTTCAAGGTGAAATAGA+AGG + chr4_4:49143881-49143900 Msa0685090:intron 30.0%
ACACTACGAAAAAATATACC+AGG - chr4_4:49144323-49144342 None:intergenic 30.0%
TGTTGTAACATAATAGATGC+TGG + chr4_4:49144799-49144818 Msa0685090:three_prime_UTR 30.0%
TAAAATGTAACCCAACCATA+AGG - chr4_4:49144907-49144926 None:intergenic 30.0%
TCAACAAGATAGTTGACAAA+AGG - chr4_4:49144988-49145007 None:intergenic 30.0%
!! ATGTGATGATGGTACGTAAA+AGG - chr4_4:49137455-49137474 None:intergenic 35.0%
TTGGGATCCAAATTCTTCAA+TGG + chr4_4:49137572-49137591 Msa0685090:exon 35.0%
GTAGAAATCGTCATCTTCAA+GGG - chr4_4:49137637-49137656 None:intergenic 35.0%
TGTAGAAATCGTCATCTTCA+AGG - chr4_4:49137638-49137657 None:intergenic 35.0%
! AGTGATTATGATGATGATGC+TGG + chr4_4:49137693-49137712 Msa0685090:CDS 35.0%
ATTTAGTGATTAGTGGTGGT+TGG + chr4_4:49138173-49138192 Msa0685090:intron 35.0%
!!! CTGTTTTTTTTTGTAGGTGG+TGG + chr4_4:49138264-49138283 Msa0685090:intron 35.0%
CTAATCAGTTACACGGAAAT+CGG - chr4_4:49138429-49138448 None:intergenic 35.0%
! TTCCGTGTAACTGATTAGTT+TGG + chr4_4:49138431-49138450 Msa0685090:intron 35.0%
!! GTGTAACTGATTAGTTTGGT+TGG + chr4_4:49138435-49138454 Msa0685090:intron 35.0%
ATCTGATATCCAAGTAAGAC+AGG + chr4_4:49138488-49138507 Msa0685090:CDS 35.0%
!!! TTGATTTTTTCTCCTGCTGT+GGG + chr4_4:49139256-49139275 Msa0685090:intron 35.0%
!! TTTGGTATTTGTTTCTGCTG+TGG + chr4_4:49139301-49139320 Msa0685090:intron 35.0%
TTAACAAAAGAAGAGGGGAA+TGG - chr4_4:49139436-49139455 None:intergenic 35.0%
GGGTGATAGAATATGCAATT+TGG + chr4_4:49139507-49139526 Msa0685090:intron 35.0%
ATAAGATCTACGAAGGTAAC+GGG - chr4_4:49139811-49139830 None:intergenic 35.0%
CTTCGATATAAGATCTACGA+AGG - chr4_4:49139818-49139837 None:intergenic 35.0%
TAGTCTACATGGATTCGAAT+TGG - chr4_4:49139884-49139903 None:intergenic 35.0%
!! TTACTAGTTTAGCTTTAGCC+AGG - chr4_4:49139987-49140006 None:intergenic 35.0%
TAACTGCATATTCACAACCA+GGG - chr4_4:49140171-49140190 None:intergenic 35.0%
!!! TATGCAGTTACTTTTGATGC+TGG + chr4_4:49140181-49140200 Msa0685090:CDS 35.0%
AACAAAAGCTATACGAACAG+AGG - chr4_4:49140231-49140250 None:intergenic 35.0%
! TCTGTTCGTATAGCTTTTGT+TGG + chr4_4:49140230-49140249 Msa0685090:CDS 35.0%
TAGATTCAGTCACATTAGTC+AGG - chr4_4:49140325-49140344 None:intergenic 35.0%
AGTAGAAAGAGAGAGTAATG+TGG + chr4_4:49140477-49140496 Msa0685090:intron 35.0%
!! CCATGGATTATTAGTTTGTC+TGG - chr4_4:49140707-49140726 None:intergenic 35.0%
CCAGACAAACTAATAATCCA+TGG + chr4_4:49140704-49140723 Msa0685090:intron 35.0%
ATTAGGATTCTACATTCGCT+TGG + chr4_4:49140732-49140751 Msa0685090:intron 35.0%
CGACCAATCGAAAAAAATCA+AGG + chr4_4:49140910-49140929 Msa0685090:CDS 35.0%
GCATTCTATGTTCTTGGATA+AGG + chr4_4:49141033-49141052 Msa0685090:intron 35.0%
GCTCAATCAGTTTGAAAACA+TGG - chr4_4:49141278-49141297 None:intergenic 35.0%
!! CTTTTCTTGATTCAGGTTTC+TGG + chr4_4:49141444-49141463 Msa0685090:intron 35.0%
TACTGAAAGAAGAAGGGAAA+TGG + chr4_4:49141520-49141539 Msa0685090:CDS 35.0%
GATACACCCATTATTATGAG+CGG + chr4_4:49141561-49141580 Msa0685090:CDS 35.0%
! GTTAGGTGAAAGTACATCTA+TGG - chr4_4:49141831-49141850 None:intergenic 35.0%
!! TCAAATAAGAAGTGTCTTGC+AGG - chr4_4:49141906-49141925 None:intergenic 35.0%
! TGTCACTTCAGGTTTATCAA+AGG - chr4_4:49141965-49141984 None:intergenic 35.0%
! AAAAAGAACTCTGTCACTTC+AGG - chr4_4:49141976-49141995 None:intergenic 35.0%
TTGTATACTTCTCCTCCTAA+TGG + chr4_4:49142019-49142038 Msa0685090:intron 35.0%
GAGAGACCAAAGAAAACTAT+AGG - chr4_4:49142050-49142069 None:intergenic 35.0%
! GGTACCTTATCTTTTAGTCT+TGG - chr4_4:49142315-49142334 None:intergenic 35.0%
CGAGAAACAGCTAGAAAATT+TGG - chr4_4:49142379-49142398 None:intergenic 35.0%
!! GCTAAGAAAGGTGTTATGAT+TGG - chr4_4:49142432-49142451 None:intergenic 35.0%
! TAATGATGGAGTGCTAAGAA+AGG - chr4_4:49142444-49142463 None:intergenic 35.0%
ACATGGAATGGAAAGTTAAC+CGG + chr4_4:49143069-49143088 Msa0685090:intron 35.0%
! AAAAATGTTTCGCCTTGTTC+AGG + chr4_4:49143497-49143516 Msa0685090:intron 35.0%
AAATGGCATATTCCTGAACA+AGG - chr4_4:49143512-49143531 None:intergenic 35.0%
AGTGAAAGATGAGGATTAAC+TGG - chr4_4:49143637-49143656 None:intergenic 35.0%
AATCCTCATCTTTCACTTTC+TGG + chr4_4:49143640-49143659 Msa0685090:intron 35.0%
ATAAACTTAAGCTGTGACTC+AGG - chr4_4:49143699-49143718 None:intergenic 35.0%
ACAGCTTAAGTTTATTACGG+AGG + chr4_4:49143704-49143723 Msa0685090:CDS 35.0%
TGAAATGGACGTATGCATAT+GGG + chr4_4:49143958-49143977 Msa0685090:CDS 35.0%
TACTATTTACCTGAGCATGA+GGG + chr4_4:49143981-49144000 Msa0685090:CDS 35.0%
CAGTTCTTTGAGTATTTGCA+AGG + chr4_4:49144014-49144033 Msa0685090:CDS 35.0%
GACTTTCGTACAAAATTAGC+TGG + chr4_4:49144218-49144237 Msa0685090:CDS 35.0%
CAAAATTAGCTGGATTGACT+AGG + chr4_4:49144228-49144247 Msa0685090:CDS 35.0%
ACTACTTCGAGAATTTAGTG+AGG + chr4_4:49144351-49144370 Msa0685090:CDS 35.0%
CTACTTCGAGAATTTAGTGA+GGG + chr4_4:49144352-49144371 Msa0685090:CDS 35.0%
AATCAACGTCGATGAAAATG+TGG + chr4_4:49144584-49144603 Msa0685090:exon 35.0%
ATCAACGTCGATGAAAATGT+GGG + chr4_4:49144585-49144604 Msa0685090:exon 35.0%
! TCCGTTAGAAACACTTGTTA+CGG + chr4_4:49144611-49144630 Msa0685090:three_prime_UTR 35.0%
! ACCGTAACAAGTGTTTCTAA+CGG - chr4_4:49144615-49144634 None:intergenic 35.0%
TCTTCATCGTCTTCACATAT+TGG - chr4_4:49144692-49144711 None:intergenic 35.0%
AACAAATTCAGCTGAGTGAT+AGG - chr4_4:49144746-49144765 None:intergenic 35.0%
! ATCTAGGGCTTGAGAAATTG+AGG - chr4_4:49137545-49137564 None:intergenic 40.0%
AAGCCCTAGATTCTCGATTT+GGG + chr4_4:49137554-49137573 Msa0685090:five_prime_UTR 40.0%
GATCCCAAATCGAGAATCTA+GGG - chr4_4:49137560-49137579 None:intergenic 40.0%
TCGGAGTCCATTGAAGAATT+TGG - chr4_4:49137582-49137601 None:intergenic 40.0%
AGCATCGTGCATATCATCTT+CGG - chr4_4:49137601-49137620 None:intergenic 40.0%
GAAGATGACGATTTCTACAG+TGG + chr4_4:49137639-49137658 Msa0685090:CDS 40.0%
CGATTTCTACAGTGGTGATA+CGG + chr4_4:49137647-49137666 Msa0685090:CDS 40.0%
TGTCATCTTCCTGTCTTACT+TGG - chr4_4:49138500-49138519 None:intergenic 40.0%
TACTACTTCGTCACCACAAT+TGG + chr4_4:49138568-49138587 Msa0685090:CDS 40.0%
TGAGAGATGCTTTGTGTTGT+AGG + chr4_4:49139084-49139103 Msa0685090:intron 40.0%
TCAGTAAAGTGCATGATGCA+TGG + chr4_4:49139111-49139130 Msa0685090:CDS 40.0%
TATCTCACCTCGCTAGTATT+AGG - chr4_4:49139200-49139219 None:intergenic 40.0%
AATACTAGCGAGGTGAGATA+TGG + chr4_4:49139200-49139219 Msa0685090:intron 40.0%
!!! CTTGATTTTTTCTCCTGCTG+TGG + chr4_4:49139255-49139274 Msa0685090:intron 40.0%
TTTGAAAACTATCCTCGCTC+TGG + chr4_4:49139346-49139365 Msa0685090:CDS 40.0%
TTGAAAACTATCCTCGCTCT+GGG + chr4_4:49139347-49139366 Msa0685090:CDS 40.0%
! ATCCATACTGTTTCTCATGC+TGG + chr4_4:49139392-49139411 Msa0685090:CDS 40.0%
! TCCATACTGTTTCTCATGCT+GGG + chr4_4:49139393-49139412 Msa0685090:CDS 40.0%
CATCTCAACATCAAACATCC+AGG - chr4_4:49139708-49139727 None:intergenic 40.0%
AACTGCATATTCACAACCAG+GGG - chr4_4:49140170-49140189 None:intergenic 40.0%
GTAACTGCATATTCACAACC+AGG - chr4_4:49140172-49140191 None:intergenic 40.0%
TGTTGGAATGTAAGTTCTGC+TGG + chr4_4:49140247-49140266 Msa0685090:intron 40.0%
CAGAGTCTGAAAACATGAAC+TGG + chr4_4:49140415-49140434 Msa0685090:CDS 40.0%
TTGAAGTGGACCTTGGTTAA+AGG + chr4_4:49140592-49140611 Msa0685090:intron 40.0%
TGAAGTGGACCTTGGTTAAA+GGG + chr4_4:49140593-49140612 Msa0685090:intron 40.0%
TAGTCCAAACATAAAGGGCT+AGG - chr4_4:49140676-49140695 None:intergenic 40.0%
GAGTTTCTCTGCATTTCTGT+AGG + chr4_4:49140772-49140791 Msa0685090:intron 40.0%
TATCCACATAGGTTATGCCT+TGG + chr4_4:49141319-49141338 Msa0685090:intron 40.0%
TTATGAAGCAGCTAAGCAAG+AGG + chr4_4:49141393-49141412 Msa0685090:CDS 40.0%
TATGAAGCAGCTAAGCAAGA+GGG + chr4_4:49141394-49141413 Msa0685090:CDS 40.0%
GGAAATGGCGAAGAATTCAT+TGG + chr4_4:49141535-49141554 Msa0685090:CDS 40.0%
! GATACATACAGATTGGTTGC+TGG - chr4_4:49141591-49141610 None:intergenic 40.0%
TTGTTCGGTAGTCATGTCTT+AGG + chr4_4:49141624-49141643 Msa0685090:intron 40.0%
TGTTCGGTAGTCATGTCTTA+GGG + chr4_4:49141625-49141644 Msa0685090:intron 40.0%
!! AATAAGAAGTGTCTTGCAGG+AGG - chr4_4:49141903-49141922 None:intergenic 40.0%
CAAAGGAATAACCAGTCAAG+AGG - chr4_4:49141948-49141967 None:intergenic 40.0%
AAACTATAGGCCAGACCATT+AGG - chr4_4:49142037-49142056 None:intergenic 40.0%
! GTCTGGCCTATAGTTTTCTT+TGG + chr4_4:49142041-49142060 Msa0685090:intron 40.0%
AAGCACCACTCAAGTTCAAA+AGG - chr4_4:49142203-49142222 None:intergenic 40.0%
TTTGTTTCAACCTCCCTATG+TGG + chr4_4:49142253-49142272 Msa0685090:intron 40.0%
! ACCTCCCTATGTGGATTATA+TGG + chr4_4:49142262-49142281 Msa0685090:intron 40.0%
ACCATATAATCCACATAGGG+AGG - chr4_4:49142266-49142285 None:intergenic 40.0%
CAGCTTCAACATTCCTCTAA+GGG - chr4_4:49142930-49142949 None:intergenic 40.0%
ACAGCTTCAACATTCCTCTA+AGG - chr4_4:49142931-49142950 None:intergenic 40.0%
AGAGGAATGTTGAAGCTGTT+GGG + chr4_4:49142932-49142951 Msa0685090:intron 40.0%
! TTTTTCTCGTCTCACAGTCA+AGG + chr4_4:49143287-49143306 Msa0685090:intron 40.0%
CATCAACGACAGATTATGCA+AGG - chr4_4:49143593-49143612 None:intergenic 40.0%
AATCTGTCGTTGATGCTTCT+AGG + chr4_4:49143598-49143617 Msa0685090:intron 40.0%
ATCTGTCGTTGATGCTTCTA+GGG + chr4_4:49143599-49143618 Msa0685090:intron 40.0%
TTAAGTTTATTACGGAGGCC+TGG + chr4_4:49143709-49143728 Msa0685090:CDS 40.0%
TCTTCCAGATAGTTGAGTGT+AGG + chr4_4:49143928-49143947 Msa0685090:intron 40.0%
CTGAAATGGACGTATGCATA+TGG + chr4_4:49143957-49143976 Msa0685090:CDS 40.0%
GTACTATTTACCTGAGCATG+AGG + chr4_4:49143980-49143999 Msa0685090:CDS 40.0%
!!! TTTTCAGGTGAAGCAGAATC+TGG + chr4_4:49144116-49144135 Msa0685090:intron 40.0%
!! TTAGTGAGGGCTTTAGAGAA+TGG + chr4_4:49144365-49144384 Msa0685090:CDS 40.0%
CTATCCGATGTAGATGCTAA+CGG + chr4_4:49144389-49144408 Msa0685090:CDS 40.0%
TATCCGATGTAGATGCTAAC+GGG + chr4_4:49144390-49144409 Msa0685090:CDS 40.0%
GAACTTCTGATGATAGTCAC+TGG + chr4_4:49144504-49144523 Msa0685090:CDS 40.0%
TTGATTGCAAATCTGGCATG+TGG - chr4_4:49144570-49144589 None:intergenic 40.0%
! ATCGACGTTGATTGCAAATC+TGG - chr4_4:49144577-49144596 None:intergenic 40.0%
GGGTTCTTCTCATTATATGC+TGG + chr4_4:49144664-49144683 Msa0685090:three_prime_UTR 40.0%
AATTCAGCTGAGTGATAGGA+GGG - chr4_4:49144742-49144761 None:intergenic 40.0%
AAATTCAGCTGAGTGATAGG+AGG - chr4_4:49144743-49144762 None:intergenic 40.0%
CAAGCCCTAGATTCTCGATT+TGG + chr4_4:49137553-49137572 Msa0685090:five_prime_UTR 45.0%
GGATCCCAAATCGAGAATCT+AGG - chr4_4:49137561-49137580 None:intergenic 45.0%
TATGCACGATGCTCACGATA+TGG + chr4_4:49137608-49137627 Msa0685090:CDS 45.0%
TACAGTGGTGATACGGAAGA+AGG + chr4_4:49137654-49137673 Msa0685090:CDS 45.0%
TGATTAGTGGTGGTTGGATG+AGG + chr4_4:49138179-49138198 Msa0685090:intron 45.0%
GTATTAGGATGCTGGACAAC+TGG - chr4_4:49139185-49139204 None:intergenic 45.0%
TAGCGAGGTGAGATATGGAT+GGG + chr4_4:49139205-49139224 Msa0685090:intron 45.0%
AACAGATGCCACATGTAAGC+TGG - chr4_4:49139327-49139346 None:intergenic 45.0%
TCCCAGCATGAGAAACAGTA+TGG - chr4_4:49139397-49139416 None:intergenic 45.0%
! TACTGTTTCTCATGCTGGGA+AGG + chr4_4:49139397-49139416 Msa0685090:CDS 45.0%
! TTTGTCCTTTTCGGCATGCT+AGG + chr4_4:49139654-49139673 Msa0685090:intron 45.0%
TGTATCCTAGCATGCCGAAA+AGG - chr4_4:49139662-49139681 None:intergenic 45.0%
ATCAGCACGTCCATCAATGA+TGG + chr4_4:49139681-49139700 Msa0685090:CDS 45.0%
ACATCCAGGACCATCATTGA+TGG - chr4_4:49139694-49139713 None:intergenic 45.0%
CTACATGGATTCGAATTGGC+AGG - chr4_4:49139880-49139899 None:intergenic 45.0%
!!! GCAGTTACTTTTGATGCTGG+AGG + chr4_4:49140184-49140203 Msa0685090:CDS 45.0%
!!! GTTACTTTTGATGCTGGAGG+TGG + chr4_4:49140187-49140206 Msa0685090:CDS 45.0%
!! GCTTAAGTTGAAGTGGACCT+TGG + chr4_4:49140585-49140604 Msa0685090:intron 45.0%
GAAGTGGACCTTGGTTAAAG+GGG + chr4_4:49140594-49140613 Msa0685090:intron 45.0%
GATGCCTAGCCCTTTATGTT+TGG + chr4_4:49140669-49140688 Msa0685090:intron 45.0%
! TCGATTGGTCGCTTGCATTT+GGG - chr4_4:49140901-49140920 None:intergenic 45.0%
! TTCGATTGGTCGCTTGCATT+TGG - chr4_4:49140902-49140921 None:intergenic 45.0%
! ATAGGTTATGCCTTGGTGCA+TGG + chr4_4:49141326-49141345 Msa0685090:intron 45.0%
TCAGACCATGGTGAAAGAAC+TGG + chr4_4:49141349-49141368 Msa0685090:CDS 45.0%
AACCACCAGTTCTTTCACCA+TGG - chr4_4:49141357-49141376 None:intergenic 45.0%
ACACCCATTATTATGAGCGG+TGG + chr4_4:49141564-49141583 Msa0685090:CDS 45.0%
CACCCATTATTATGAGCGGT+GGG + chr4_4:49141565-49141584 Msa0685090:CDS 45.0%
TACTTCTCCTCCTAATGGTC+TGG + chr4_4:49142024-49142043 Msa0685090:intron 45.0%
TGGTCTCTCTTAAAAGGTCC+AGG + chr4_4:49142061-49142080 Msa0685090:intron 45.0%
GGTCTCTCTTAAAAGGTCCA+GGG + chr4_4:49142062-49142081 Msa0685090:intron 45.0%
! ATAAGGTACCCCAAGTCTCT+TGG + chr4_4:49142325-49142344 Msa0685090:intron 45.0%
! TAAGGTACCCCAAGTCTCTT+GGG + chr4_4:49142326-49142345 Msa0685090:intron 45.0%
ATCTGTTCTGTGTCATCCTG+TGG + chr4_4:49142830-49142849 Msa0685090:intron 45.0%
! CAACATTCCTCTAAGGGAGT+TGG - chr4_4:49142924-49142943 None:intergenic 45.0%
CAGCTTCAACATTCCTCTGA+GGG - chr4_4:49142955-49142974 None:intergenic 45.0%
ACAGCTTCAACATTCCTCTG+AGG - chr4_4:49142956-49142975 None:intergenic 45.0%
CAGAGGAATGTTGAAGCTGT+TGG + chr4_4:49142956-49142975 Msa0685090:intron 45.0%
TTAAAAGGCCAGGAGAGAGA+TGG - chr4_4:49143374-49143393 None:intergenic 45.0%
CTGCCAGAAAGTGAAAGATG+AGG - chr4_4:49143646-49143665 None:intergenic 45.0%
ACTTAAGCTGTGACTCAGGT+TGG - chr4_4:49143695-49143714 None:intergenic 45.0%
CAAATCATTTACCTGCAGCC+AGG - chr4_4:49143730-49143749 None:intergenic 45.0%
CTCTCCTACACTCAACTATC+TGG - chr4_4:49143935-49143954 None:intergenic 45.0%
!! AGTGTAGGAGAGTGCTGAAA+TGG + chr4_4:49143943-49143962 Msa0685090:CDS 45.0%
!!! TTTTTTGCACCCTCATGCTC+AGG - chr4_4:49143993-49144012 None:intergenic 45.0%
ATCCGATGTAGATGCTAACG+GGG + chr4_4:49144391-49144410 Msa0685090:CDS 45.0%
ACGAGCTCAAAAAATGCTGC+AGG + chr4_4:49144431-49144450 Msa0685090:CDS 45.0%
CGAGCTCAAAAAATGCTGCA+GGG + chr4_4:49144432-49144451 Msa0685090:CDS 45.0%
GGCAGATTTGACATTCACAG+AGG - chr4_4:49144546-49144565 None:intergenic 45.0%
ATTGCAAATCTGGCATGTGG+TGG - chr4_4:49144567-49144586 None:intergenic 45.0%
AAGAACCCAATCTCAGCCTT+TGG - chr4_4:49144652-49144671 None:intergenic 45.0%
!!! CATTTTTATTTTATTTTTTT+TGG + chr4_4:49137472-49137491 Msa0685090:five_prime_UTR 5.0%
!! TTAAAAATATTACAAATAAT+TGG + chr4_4:49142805-49142824 Msa0685090:intron 5.0%
!! ATAAAATAAAATACAAAAAA+AGG - chr4_4:49144851-49144870 None:intergenic 5.0%
! TGATACGGAAGAAGGTGCGA+TGG + chr4_4:49137662-49137681 Msa0685090:CDS 50.0%
TGAAGAGCGAGTCCGAAAAG+CGG + chr4_4:49139142-49139161 Msa0685090:CDS 50.0%
!! CCAACAAGCCAACCGCTTTT+CGG - chr4_4:49139157-49139176 None:intergenic 50.0%
CCTCGCTAGTATTAGGATGC+TGG - chr4_4:49139193-49139212 None:intergenic 50.0%
CCAGCATCCTAATACTAGCG+AGG + chr4_4:49139190-49139209 Msa0685090:CDS 50.0%
CTAGCGAGGTGAGATATGGA+TGG + chr4_4:49139204-49139223 Msa0685090:intron 50.0%
GAGAATATAGCTCCCACAGC+AGG - chr4_4:49139271-49139290 None:intergenic 50.0%
!! AACTATCCTCGCTCTGGGAT+TGG + chr4_4:49139352-49139371 Msa0685090:CDS 50.0%
GGGATTGGAATGGCTTCTTG+TGG + chr4_4:49139367-49139386 Msa0685090:CDS 50.0%
ACGTCCATCAATGATGGTCC+TGG + chr4_4:49139687-49139706 Msa0685090:CDS 50.0%
AGATGTCCTGAACCCACTTG+TGG + chr4_4:49139723-49139742 Msa0685090:CDS 50.0%
ACTGAATCTACAGTGCACCG+AGG + chr4_4:49140335-49140354 Msa0685090:intron 50.0%
ACTGTGGCACTGTGGTAAAG+TGG + chr4_4:49140376-49140395 Msa0685090:CDS 50.0%
GACTCACACCCCTTTAACCA+AGG - chr4_4:49140605-49140624 None:intergenic 50.0%
GCACCAAGGCATAACCTATG+TGG - chr4_4:49141325-49141344 None:intergenic 50.0%
GACCATGGTGAAAGAACTGG+TGG + chr4_4:49141352-49141371 Msa0685090:CDS 50.0%
AAGCAAGAGGGAGTGGTAAG+AGG + chr4_4:49141406-49141425 Msa0685090:intron 50.0%
GGCCCACCGCTCATAATAAT+GGG - chr4_4:49141570-49141589 None:intergenic 50.0%
TGGCCCACCGCTCATAATAA+TGG - chr4_4:49141571-49141590 None:intergenic 50.0%
!! TCTTGCAGGAGGAGCATTGT+TGG - chr4_4:49141892-49141911 None:intergenic 50.0%
!! CCAGTCAAGAGGAGTACTCT+TGG - chr4_4:49141937-49141956 None:intergenic 50.0%
!! CCAAGAGTACTCCTCTTGAC+TGG + chr4_4:49141934-49141953 Msa0685090:intron 50.0%
CTATAGGCCAGACCATTAGG+AGG - chr4_4:49142034-49142053 None:intergenic 50.0%
! AAGGTCCAGGGTTCAAGTTC+TGG + chr4_4:49142074-49142093 Msa0685090:intron 50.0%
TCAAGGACCAACTCCCTTAG+AGG + chr4_4:49142914-49142933 Msa0685090:intron 50.0%
TGTTGAAGCTGTTCCCTCAG+AGG + chr4_4:49142939-49142958 Msa0685090:intron 50.0%
GTTGAAGCTGTTGGGTGAGT+TGG + chr4_4:49142965-49142984 Msa0685090:intron 50.0%
AGGTGAAGCAGAATCTGGTC+TGG + chr4_4:49144121-49144140 Msa0685090:intron 50.0%
! CAGCAATTCCTCAGTGCTGA+AGG + chr4_4:49144176-49144195 Msa0685090:CDS 50.0%
!! TAGATTGGCCTTCAGCACTG+AGG - chr4_4:49144187-49144206 None:intergenic 50.0%
AGCCCCGTTAGCATCTACAT+CGG - chr4_4:49144396-49144415 None:intergenic 50.0%
! TGAGCTCGTTGCTTTGCTGA+AGG - chr4_4:49144420-49144439 None:intergenic 50.0%
AAATGCTGCAGGGAGCAGTA+AGG + chr4_4:49144442-49144461 Msa0685090:CDS 50.0%
AATGCTGCAGGGAGCAGTAA+GGG + chr4_4:49144443-49144462 Msa0685090:CDS 50.0%
! GAAACACTTGTTACGGTGCG+TGG + chr4_4:49144618-49144637 Msa0685090:three_prime_UTR 50.0%
! AATCTCAGCCTTTGGTGCAG+TGG - chr4_4:49144644-49144663 None:intergenic 50.0%
ACTGCACCAAAGGCTGAGAT+TGG + chr4_4:49144643-49144662 Msa0685090:three_prime_UTR 50.0%
CTGCACCAAAGGCTGAGATT+GGG + chr4_4:49144644-49144663 Msa0685090:three_prime_UTR 50.0%
GATTGAGTCTCGTCGACCTG+AGG + chr4_4:49137740-49137759 Msa0685090:CDS 55.0%
!! CCGAAAAGCGGTTGGCTTGT+TGG + chr4_4:49139154-49139173 Msa0685090:CDS 55.0%
TGCTGTGGCCAGCTTACATG+TGG + chr4_4:49139316-49139335 Msa0685090:intron 55.0%
!! TCCTCGCTCTGGGATTGGAA+TGG + chr4_4:49139357-49139376 Msa0685090:CDS 55.0%
CCAATAGCAGCGCCACAAGT+GGG - chr4_4:49139738-49139757 None:intergenic 55.0%
ACCAATAGCAGCGCCACAAG+TGG - chr4_4:49139739-49139758 None:intergenic 55.0%
GCATATTCACAACCAGGGGC+AGG - chr4_4:49140166-49140185 None:intergenic 55.0%
GAATCTACAGTGCACCGAGG+AGG + chr4_4:49140338-49140357 Msa0685090:intron 55.0%
! GGTCGCTTGCATTTGGGACA+TGG - chr4_4:49140895-49140914 None:intergenic 55.0%
CATGGTCTGACCATGCACCA+AGG - chr4_4:49141339-49141358 None:intergenic 55.0%
! CTTGGTGCATGGTCAGACCA+TGG + chr4_4:49141337-49141356 Msa0685090:CDS 55.0%
AGCAGCTAAGCAAGAGGGAG+TGG + chr4_4:49141399-49141418 Msa0685090:CDS 55.0%
CCTTGCCAGAACTTGAACCC+TGG - chr4_4:49142082-49142101 None:intergenic 55.0%
! CCAGGGTTCAAGTTCTGGCA+AGG + chr4_4:49142079-49142098 Msa0685090:intron 55.0%
AGGTGTGGCCCAAGAGACTT+GGG - chr4_4:49142337-49142356 None:intergenic 55.0%
GTACTCAGCCATCTCTCTCC+TGG + chr4_4:49143363-49143382 Msa0685090:intron 55.0%
ATGCTGCAGGGAGCAGTAAG+GGG + chr4_4:49144444-49144463 Msa0685090:CDS 55.0%
GAGCGAGTCCGAAAAGCGGT+TGG + chr4_4:49139146-49139165 Msa0685090:CDS 60.0%
GCCATTCCAATCCCAGAGCG+AGG - chr4_4:49139361-49139380 None:intergenic 60.0%
CCCACTTGTGGCGCTGCTAT+TGG + chr4_4:49139735-49139754 Msa0685090:CDS 60.0%
TCAAAGTGGTGTCCTGCCCC+TGG + chr4_4:49140151-49140170 Msa0685090:CDS 60.0%
CACTGGACGATGAGCCTCCT+CGG - chr4_4:49140355-49140374 None:intergenic 60.0%
!! GCTCATCGTCCAGTGGACTG+TGG + chr4_4:49140360-49140379 Msa0685090:CDS 60.0%
!! TCCAGTGGACTGTGGCACTG+TGG + chr4_4:49140368-49140387 Msa0685090:CDS 60.0%
ACCACAGTGCCACAGTCCAC+TGG - chr4_4:49140372-49140391 None:intergenic 60.0%
GGTGTGGCCCAAGAGACTTG+GGG - chr4_4:49142336-49142355 None:intergenic 60.0%
GAGGTGTGGCCCAAGAGACT+TGG - chr4_4:49142338-49142357 None:intergenic 60.0%
TATTACGGAGGCCTGGCTGC+AGG + chr4_4:49143716-49143735 Msa0685090:CDS 60.0%
GGAGCAGTAAGGGGAGAGCT+GGG + chr4_4:49144453-49144472 Msa0685090:CDS 60.0%
AGTAAGGGGAGAGCTGGGAG+AGG + chr4_4:49144458-49144477 Msa0685090:CDS 60.0%
GGGAGAGCTGGGAGAGGAAA+GGG + chr4_4:49144464-49144483 Msa0685090:CDS 60.0%
! GCAGCGCCACAAGTGGGTTC+AGG - chr4_4:49139732-49139751 None:intergenic 65.0%
CGAGGAGGCTCATCGTCCAG+TGG + chr4_4:49140353-49140372 Msa0685090:CDS 65.0%
GGGAGCAGTAAGGGGAGAGC+TGG + chr4_4:49144452-49144471 Msa0685090:CDS 65.0%
GGGGAGAGCTGGGAGAGGAA+AGG + chr4_4:49144463-49144482 Msa0685090:CDS 65.0%
GTGCGTGGCCACTGCACCAA+AGG + chr4_4:49144633-49144652 Msa0685090:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49137414 49145014 49137414 ID=Msa0685090;Name=Msa0685090
chr4_4 mRNA 49137414 49145014 49137414 ID=Msa0685090-mRNA-1;Parent=Msa0685090;Name=Msa0685090-mRNA-1;_AED=0.09;_eAED=0.09;_QI=177|1|1|1|0.85|0.93|15|416|584
chr4_4 exon 49137414 49137761 49137414 ID=Msa0685090-mRNA-1:exon:12223;Parent=Msa0685090-mRNA-1
chr4_4 exon 49138465 49138589 49138465 ID=Msa0685090-mRNA-1:exon:12224;Parent=Msa0685090-mRNA-1
chr4_4 exon 49139106 49139211 49139106 ID=Msa0685090-mRNA-1:exon:12225;Parent=Msa0685090-mRNA-1
chr4_4 exon 49139328 49139418 49139328 ID=Msa0685090-mRNA-1:exon:12226;Parent=Msa0685090-mRNA-1
chr4_4 exon 49139676 49139848 49139676 ID=Msa0685090-mRNA-1:exon:12227;Parent=Msa0685090-mRNA-1
chr4_4 exon 49140151 49140255 49140151 ID=Msa0685090-mRNA-1:exon:12228;Parent=Msa0685090-mRNA-1
chr4_4 exon 49140348 49140436 49140348 ID=Msa0685090-mRNA-1:exon:12229;Parent=Msa0685090-mRNA-1
chr4_4 exon 49140873 49140980 49140873 ID=Msa0685090-mRNA-1:exon:12230;Parent=Msa0685090-mRNA-1
chr4_4 exon 49141330 49141420 49141330 ID=Msa0685090-mRNA-1:exon:12231;Parent=Msa0685090-mRNA-1
chr4_4 exon 49141512 49141601 49141512 ID=Msa0685090-mRNA-1:exon:12232;Parent=Msa0685090-mRNA-1
chr4_4 exon 49143304 49143351 49143304 ID=Msa0685090-mRNA-1:exon:12233;Parent=Msa0685090-mRNA-1
chr4_4 exon 49143666 49143737 49143666 ID=Msa0685090-mRNA-1:exon:12234;Parent=Msa0685090-mRNA-1
chr4_4 exon 49143936 49144035 49143936 ID=Msa0685090-mRNA-1:exon:12235;Parent=Msa0685090-mRNA-1
chr4_4 exon 49144123 49144249 49144123 ID=Msa0685090-mRNA-1:exon:12236;Parent=Msa0685090-mRNA-1
chr4_4 exon 49144340 49145014 49144340 ID=Msa0685090-mRNA-1:exon:12237;Parent=Msa0685090-mRNA-1
chr4_4 five_prime_UTR 49137414 49137590 49137414 ID=Msa0685090-mRNA-1:five_prime_utr;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49137591 49137761 49137591 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49138465 49138589 49138465 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49139106 49139211 49139106 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49139328 49139418 49139328 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49139676 49139848 49139676 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49140151 49140255 49140151 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49140348 49140436 49140348 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49140873 49140980 49140873 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49141330 49141420 49141330 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49141512 49141601 49141512 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49143304 49143351 49143304 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49143666 49143737 49143666 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49143936 49144035 49143936 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49144123 49144249 49144123 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 CDS 49144340 49144598 49144340 ID=Msa0685090-mRNA-1:cds;Parent=Msa0685090-mRNA-1
chr4_4 three_prime_UTR 49144599 49145014 49144599 ID=Msa0685090-mRNA-1:three_prime_utr;Parent=Msa0685090-mRNA-1
Gene Sequence

>Msa0685090

ATGGACTCCGAAGATGATATGCACGATGCTCACGATATGGAGTCCCTTGAAGATGACGATTTCTACAGTGGTGATACGGAAGAAGGTGCGATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACCATATTGAAGGAATCTGATATCCAAGTAAGACAGGAAGATGACATTGATACAGTTGCAGCTGTTCTTTCTGTATCAAAAGTTGCTGCAAGCATACTACTTCGTCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGAGCGAGTCCGAAAAGCGGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATACTAGCGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGCTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATACATCAGCACGTCCATCAATGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGCGCTGCTATTGGTCAAGATATGATTGATTCATTAGCATGTAATGAAGATAAAGAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCAGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACCGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAATGCAAGCGACCAATCGAAAAAAATCAAGGATGCATGCACATCACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCGAAGAATTCATTGGAGAGATACACCCATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGAACAGATGCAAAATGTTCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAGCATGAGGGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCTGAAAAAGAGCTACAGCAATTCCTCAGTGCTGAAGGCCAATCTAAAGAATTCAATGACTTTCGTACAAAATTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTAGATGCTAACGGGGCTTCCTTCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGTAAGGGGAGAGCTGGGAGAGGAAAGGGAGCTTTGCGAACAAACAGAACTTCTGATGATAGTCACTGGAGCTGTGAACATTGTACCTCTGTGAATGTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA
Protein sequence

>Msa0685090

MDSEDDMHDAHDMESLEDDDFYSGDTEEGAMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIQVRQEDDIDTVAAVLSVSKVAASILLRHHNWSVSKVHDAWFADEERVRKAVGLLEKPVVQHPNTSELTCGICFENYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDSLACNEDKEKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLEQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEGAKKQFFEYLQGEAESGLERLHQCAEKELQQFLSAEGQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGASFSKATSSKNAAGSSKGRAGRGKGALRTNRTSDDSHWSCEHCTSVNVKSATTCQICNQRR*