Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102700 | XP_003597698.1 | 82.909 | 275 | 29 | 2 | 1 | 257 | 1 | 275 | 4.54e-158 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102700 | sp|Q500U8|TKPR1_ARATH | 63.971 | 272 | 79 | 3 | 4 | 257 | 7 | 277 | 2.18e-120 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102700 | G7IUM5 | 82.909 | 275 | 29 | 2 | 1 | 257 | 1 | 275 | 2.17e-158 | 453 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719700 | Msa1102700 | 0.885506 | 7.668849e-72 | -8.615850e-47 |
| Msa1023450 | Msa1102700 | 0.844223 | 8.635797e-59 | -8.615850e-47 |
| Msa1062600 | Msa1102700 | 0.882616 | 8.968719e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102700 | MtrunA17_Chr2g0331211 | 82.909 | 275 | 29 | 2 | 1 | 257 | 1 | 275 | 4.17e-162 | 453 |
| Msa1102700 | MtrunA17_Chr3g0077231 | 45.556 | 270 | 129 | 4 | 5 | 257 | 6 | 274 | 1.04e-76 | 236 |
| Msa1102700 | MtrunA17_Chr3g0077221 | 45.185 | 270 | 130 | 4 | 5 | 257 | 10 | 278 | 2.74e-72 | 224 |
| Msa1102700 | MtrunA17_Chr8g0364051 | 43.985 | 266 | 132 | 4 | 5 | 254 | 8 | 272 | 6.27e-70 | 218 |
| Msa1102700 | MtrunA17_Chr8g0363831 | 44.487 | 263 | 129 | 4 | 5 | 251 | 9 | 270 | 8.10e-70 | 218 |
| Msa1102700 | MtrunA17_Chr4g0039311 | 42.379 | 269 | 137 | 4 | 5 | 256 | 11 | 278 | 6.99e-68 | 213 |
| Msa1102700 | MtrunA17_Chr4g0039321 | 41.636 | 269 | 139 | 4 | 5 | 256 | 9 | 276 | 5.23e-64 | 203 |
| Msa1102700 | MtrunA17_Chr1g0155411 | 40.293 | 273 | 139 | 6 | 5 | 256 | 8 | 277 | 1.09e-61 | 198 |
| Msa1102700 | MtrunA17_Chr5g0423551 | 40.149 | 269 | 143 | 3 | 4 | 255 | 3 | 270 | 9.36e-61 | 195 |
| Msa1102700 | MtrunA17_Chr5g0431311 | 41.091 | 275 | 134 | 5 | 5 | 257 | 5 | 273 | 1.23e-60 | 194 |
| Msa1102700 | MtrunA17_Chr4g0002661 | 38.929 | 280 | 144 | 5 | 4 | 262 | 12 | 285 | 2.48e-59 | 191 |
| Msa1102700 | MtrunA17_Chr1g0155431 | 37.269 | 271 | 150 | 4 | 5 | 256 | 8 | 277 | 1.22e-57 | 187 |
| Msa1102700 | MtrunA17_Chr3g0106111 | 37.956 | 274 | 152 | 4 | 1 | 257 | 1 | 273 | 5.75e-56 | 182 |
| Msa1102700 | MtrunA17_Chr4g0002961 | 38.214 | 280 | 146 | 4 | 4 | 262 | 12 | 285 | 8.03e-55 | 180 |
| Msa1102700 | MtrunA17_Chr4g0048961 | 36.299 | 281 | 149 | 5 | 4 | 256 | 13 | 291 | 7.18e-54 | 177 |
| Msa1102700 | MtrunA17_Chr7g0245671 | 37.011 | 281 | 148 | 8 | 4 | 259 | 7 | 283 | 2.40e-52 | 173 |
| Msa1102700 | MtrunA17_Chr7g0245641 | 35.125 | 279 | 156 | 6 | 4 | 259 | 44 | 320 | 1.79e-51 | 172 |
| Msa1102700 | MtrunA17_Chr7g0245741 | 35.165 | 273 | 155 | 5 | 4 | 256 | 7 | 277 | 5.28e-51 | 170 |
| Msa1102700 | MtrunA17_Chr7g0245691 | 34.643 | 280 | 157 | 5 | 4 | 259 | 7 | 284 | 1.02e-49 | 167 |
| Msa1102700 | MtrunA17_Chr2g0333781 | 39.033 | 269 | 140 | 5 | 5 | 256 | 20 | 281 | 4.53e-49 | 165 |
| Msa1102700 | MtrunA17_Chr7g0245631 | 37.407 | 270 | 147 | 5 | 4 | 253 | 7 | 274 | 6.58e-49 | 164 |
| Msa1102700 | MtrunA17_Chr2g0291541 | 36.296 | 270 | 152 | 6 | 5 | 255 | 10 | 278 | 9.71e-48 | 161 |
| Msa1102700 | MtrunA17_Chr7g0245731 | 34.432 | 273 | 157 | 5 | 4 | 256 | 57 | 327 | 7.05e-47 | 160 |
| Msa1102700 | MtrunA17_Chr4g0042101 | 33.688 | 282 | 149 | 5 | 4 | 250 | 23 | 301 | 3.95e-46 | 158 |
| Msa1102700 | MtrunA17_Chr4g0001321 | 38.462 | 273 | 136 | 7 | 5 | 256 | 17 | 278 | 4.26e-46 | 157 |
| Msa1102700 | MtrunA17_Chr4g0010991 | 31.502 | 273 | 159 | 8 | 5 | 253 | 8 | 276 | 2.31e-34 | 126 |
| Msa1102700 | MtrunA17_Chr7g0245711 | 30.672 | 238 | 144 | 4 | 38 | 256 | 4 | 239 | 1.70e-33 | 123 |
| Msa1102700 | MtrunA17_Chr6g0450211 | 29.766 | 299 | 176 | 10 | 5 | 275 | 55 | 347 | 3.98e-28 | 110 |
| Msa1102700 | MtrunA17_Chr7g0275521 | 31.849 | 292 | 153 | 11 | 3 | 253 | 5 | 291 | 7.65e-28 | 109 |
| Msa1102700 | MtrunA17_Chr2g0282001 | 28.125 | 288 | 170 | 7 | 2 | 253 | 4 | 290 | 3.19e-25 | 102 |
| Msa1102700 | MtrunA17_Chr2g0281991 | 28.866 | 291 | 162 | 8 | 3 | 253 | 6 | 291 | 9.35e-25 | 101 |
| Msa1102700 | MtrunA17_Chr5g0411071 | 29.278 | 263 | 154 | 9 | 5 | 249 | 12 | 260 | 5.64e-22 | 92.8 |
| Msa1102700 | MtrunA17_Chr2g0282011 | 28.425 | 292 | 170 | 8 | 3 | 257 | 6 | 295 | 6.64e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102700 | AT4G35420.1 | 63.971 | 272 | 79 | 3 | 4 | 257 | 7 | 277 | 2.21e-121 | 350 |
| Msa1102700 | AT1G51410.1 | 45.421 | 273 | 131 | 4 | 2 | 257 | 6 | 277 | 1.14e-70 | 221 |
| Msa1102700 | AT5G19440.1 | 44.815 | 270 | 131 | 4 | 5 | 257 | 10 | 278 | 3.13e-70 | 219 |
| Msa1102700 | AT5G58490.1 | 43.273 | 275 | 128 | 5 | 5 | 257 | 9 | 277 | 1.03e-66 | 211 |
| Msa1102700 | AT1G09480.2 | 42.424 | 264 | 134 | 5 | 5 | 251 | 8 | 270 | 1.36e-65 | 207 |
| Msa1102700 | AT1G09480.1 | 42.424 | 264 | 134 | 5 | 5 | 251 | 55 | 317 | 4.81e-65 | 207 |
| Msa1102700 | AT1G09510.1 | 40.283 | 283 | 150 | 5 | 5 | 269 | 8 | 289 | 1.28e-63 | 202 |
| Msa1102700 | AT1G66800.1 | 41.445 | 263 | 134 | 4 | 5 | 251 | 8 | 266 | 3.60e-62 | 199 |
| Msa1102700 | AT1G68540.1 | 38.951 | 267 | 145 | 3 | 7 | 255 | 6 | 272 | 1.03e-61 | 197 |
| Msa1102700 | AT1G09490.1 | 40.909 | 264 | 138 | 4 | 5 | 251 | 8 | 270 | 2.61e-61 | 197 |
| Msa1102700 | AT1G09500.3 | 39.773 | 264 | 142 | 3 | 5 | 251 | 8 | 271 | 3.86e-61 | 195 |
| Msa1102700 | AT1G09500.1 | 39.773 | 264 | 142 | 3 | 5 | 251 | 8 | 271 | 9.82e-61 | 195 |
| Msa1102700 | AT5G42800.1 | 40.074 | 272 | 141 | 5 | 5 | 256 | 8 | 277 | 2.74e-59 | 193 |
| Msa1102700 | AT1G25460.1 | 40.449 | 267 | 139 | 5 | 7 | 255 | 6 | 270 | 1.25e-55 | 182 |
| Msa1102700 | AT2G02400.1 | 37.970 | 266 | 145 | 5 | 5 | 253 | 6 | 268 | 1.32e-55 | 182 |
| Msa1102700 | AT1G61720.1 | 36.331 | 278 | 147 | 5 | 4 | 253 | 12 | 287 | 1.62e-51 | 172 |
| Msa1102700 | AT2G33590.1 | 37.113 | 291 | 162 | 5 | 4 | 275 | 8 | 296 | 5.00e-49 | 165 |
| Msa1102700 | AT1G76470.1 | 37.324 | 284 | 148 | 4 | 4 | 263 | 6 | 283 | 6.46e-48 | 162 |
| Msa1102700 | AT4G27250.2 | 34.317 | 271 | 146 | 7 | 6 | 250 | 14 | 278 | 1.35e-46 | 159 |
| Msa1102700 | AT2G33600.1 | 36.765 | 272 | 152 | 4 | 4 | 257 | 8 | 277 | 1.09e-45 | 156 |
| Msa1102700 | AT1G15950.5 | 37.818 | 275 | 147 | 6 | 5 | 262 | 13 | 280 | 1.20e-45 | 155 |
| Msa1102700 | AT1G09490.2 | 37.069 | 232 | 128 | 4 | 39 | 253 | 11 | 241 | 1.63e-45 | 155 |
| Msa1102700 | AT1G15950.6 | 38.290 | 269 | 142 | 6 | 5 | 256 | 13 | 274 | 1.86e-45 | 154 |
| Msa1102700 | AT1G09500.2 | 36.638 | 232 | 130 | 3 | 39 | 253 | 8 | 239 | 1.99e-45 | 155 |
| Msa1102700 | AT2G45400.2 | 35.943 | 281 | 147 | 7 | 5 | 256 | 40 | 316 | 2.90e-45 | 155 |
| Msa1102700 | AT4G27250.1 | 33.808 | 281 | 144 | 8 | 6 | 250 | 14 | 288 | 3.27e-45 | 156 |
| Msa1102700 | AT1G15950.4 | 38.290 | 269 | 142 | 6 | 5 | 256 | 13 | 274 | 5.06e-45 | 154 |
| Msa1102700 | AT2G45400.1 | 35.943 | 281 | 147 | 7 | 5 | 256 | 40 | 316 | 6.06e-45 | 155 |
| Msa1102700 | AT1G15950.3 | 38.290 | 269 | 142 | 6 | 5 | 256 | 13 | 274 | 6.41e-45 | 155 |
| Msa1102700 | AT1G15950.1 | 38.290 | 269 | 142 | 6 | 5 | 256 | 13 | 274 | 6.41e-45 | 155 |
| Msa1102700 | AT1G15950.2 | 38.290 | 269 | 142 | 6 | 5 | 256 | 13 | 274 | 1.16e-44 | 154 |
| Msa1102700 | AT1G80820.2 | 36.431 | 269 | 147 | 6 | 5 | 256 | 8 | 269 | 9.52e-42 | 144 |
| Msa1102700 | AT1G80820.1 | 36.431 | 269 | 147 | 6 | 5 | 256 | 8 | 269 | 3.68e-41 | 145 |
| Msa1102700 | AT2G45400.4 | 36.818 | 220 | 111 | 6 | 5 | 200 | 40 | 255 | 3.11e-32 | 119 |
| Msa1102700 | AT2G45400.3 | 32.389 | 247 | 136 | 6 | 37 | 256 | 17 | 259 | 3.11e-32 | 120 |
| Msa1102700 | AT1G68540.2 | 35.758 | 165 | 88 | 3 | 109 | 255 | 1 | 165 | 1.32e-28 | 108 |
| Msa1102700 | AT2G23910.2 | 26.667 | 270 | 171 | 7 | 6 | 256 | 11 | 272 | 1.53e-28 | 110 |
| Msa1102700 | AT2G23910.3 | 26.667 | 270 | 171 | 7 | 6 | 256 | 11 | 272 | 1.71e-28 | 110 |
| Msa1102700 | AT2G23910.1 | 26.667 | 270 | 171 | 7 | 6 | 256 | 11 | 272 | 2.56e-28 | 110 |
| Msa1102700 | AT4G30470.1 | 26.296 | 270 | 171 | 7 | 6 | 256 | 11 | 271 | 9.36e-23 | 95.5 |
| Msa1102700 | AT5G14700.1 | 28.571 | 266 | 153 | 10 | 5 | 240 | 55 | 313 | 1.07e-21 | 93.6 |
| Msa1102700 | AT2G23910.4 | 23.849 | 239 | 157 | 6 | 36 | 256 | 7 | 238 | 3.27e-19 | 85.1 |
| Msa1102700 | AT1G15950.7 | 32.203 | 177 | 102 | 3 | 97 | 256 | 1 | 176 | 1.79e-18 | 82.8 |
| Msa1102700 | AT5G14700.2 | 29.358 | 218 | 124 | 8 | 5 | 199 | 55 | 265 | 1.07e-15 | 75.9 |
| Msa1102700 | AT4G33360.2 | 26.740 | 273 | 165 | 12 | 4 | 256 | 14 | 271 | 6.67e-11 | 62.0 |
| Msa1102700 | AT4G33360.3 | 26.740 | 273 | 165 | 12 | 4 | 256 | 2 | 259 | 7.69e-11 | 62.0 |
| Msa1102700 | AT4G33360.1 | 26.740 | 273 | 165 | 12 | 4 | 256 | 14 | 271 | 9.15e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATAAAGTTGAACATTTA+TGG | 0.085081 | 7_3:-36551926 | Msa1102700:CDS |
| ATTAGAACAGTTAGAGATTT+AGG | 0.154769 | 7_3:-36552046 | Msa1102700:intron |
| TAGCTTCGACAATGCGATTA+TGG | 0.197247 | 7_3:-36551844 | Msa1102700:CDS |
| ATTCTACCATCATTCATAAT+TGG | 0.235090 | 7_3:-36551076 | Msa1102700:CDS |
| ACTAGTCCAAGCTGATTTAA+TGG | 0.254779 | 7_3:-36551874 | Msa1102700:CDS |
| CGCAAGGACACTCTACCTTT+TGG | 0.261628 | 7_3:+36550721 | None:intergenic |
| GACTCGTCTATTGGTATGTT+TGG | 0.328808 | 7_3:+36551467 | None:intergenic |
| AGTTGAACATTTATGGAAGT+TGG | 0.340616 | 7_3:-36551919 | Msa1102700:CDS |
| AATAATTGATAATGATGATT+TGG | 0.352042 | 7_3:-36550782 | Msa1102700:CDS |
| AGGATCATTTGATATATGAT+TGG | 0.357612 | 7_3:+36551785 | None:intergenic |
| CATAAATATGTTGGCAAGCT+AGG | 0.359702 | 7_3:+36551052 | None:intergenic |
| CAAAATACAGGCAGAAATCT+TGG | 0.360481 | 7_3:-36551606 | Msa1102700:intron |
| GAATGCAAAGTATGTGTAAC+AGG | 0.368238 | 7_3:-36552130 | Msa1102700:CDS |
| AGCTTCGACAATGCGATTAT+GGG | 0.388369 | 7_3:-36551843 | Msa1102700:CDS |
| CTCCAAGATGACTCGTCTAT+TGG | 0.402699 | 7_3:+36551458 | None:intergenic |
| GGATCATTTGATATATGATT+GGG | 0.413478 | 7_3:+36551786 | None:intergenic |
| GTATGTGTAACAGGAGCTTC+AGG | 0.422762 | 7_3:-36552121 | Msa1102700:CDS |
| TCTGCCAGTGTCTTTGAGAC+CGG | 0.441085 | 7_3:+36551148 | None:intergenic |
| TTTCTTCCATTAAATCAGCT+TGG | 0.450929 | 7_3:+36551868 | None:intergenic |
| TAGAGTGTCCTTGCGTTTCA+CGG | 0.461971 | 7_3:-36550713 | Msa1102700:CDS |
| AACACAACTCGAACAAGGGC+TGG | 0.477786 | 7_3:+36551533 | None:intergenic |
| TTTGATATATGATTGGGTAC+TGG | 0.478192 | 7_3:+36551792 | None:intergenic |
| TTGAATTAGGGCATGGTACC+CGG | 0.479414 | 7_3:-36551167 | Msa1102700:intron |
| ATGCTAGCAAATCGTTATCC+TGG | 0.493557 | 7_3:-36550754 | Msa1102700:CDS |
| AGGCTTTGTTCTCATAAAGA+AGG | 0.503784 | 7_3:+36550833 | None:intergenic |
| CTGCCAGTGTCTTTGAGACC+GGG | 0.512637 | 7_3:+36551149 | None:intergenic |
| TTTAGCGTACCTTGGACCGC+TGG | 0.513714 | 7_3:+36551581 | None:intergenic |
| TCATATATCAAATGATCCTA+AGG | 0.522536 | 7_3:-36551781 | Msa1102700:intron |
| CCTGGTTTCCCATTCCCAAA+AGG | 0.524676 | 7_3:-36550736 | Msa1102700:CDS |
| GCAACACATTTAGCGTACCT+TGG | 0.529211 | 7_3:+36551573 | None:intergenic |
| TGGGAATATTGCAATGAGAA+AGG | 0.533022 | 7_3:-36551115 | Msa1102700:CDS |
| CTAGGTCCAATTATGAATGA+TGG | 0.539988 | 7_3:+36551070 | None:intergenic |
| GCAGTGGAACATAAATATGT+TGG | 0.548336 | 7_3:+36551043 | None:intergenic |
| TGAACATTTATGGAAGTTGG+AGG | 0.548932 | 7_3:-36551916 | Msa1102700:CDS |
| CGGCTAACACAACTCGAACA+AGG | 0.552899 | 7_3:+36551528 | None:intergenic |
| CAATTATTGCTGAACTGCAA+AGG | 0.555112 | 7_3:+36550797 | None:intergenic |
| CAATGAGAAAGGAATAGACT+TGG | 0.556122 | 7_3:-36551104 | Msa1102700:CDS |
| TATGAGAACAAAGCCTCTCA+TGG | 0.568344 | 7_3:-36550826 | Msa1102700:CDS |
| ATCTTGGAACCAGCGGTCCA+AGG | 0.581499 | 7_3:-36551590 | Msa1102700:CDS |
| ACTAGTTCGAGTCTTTCTGT+TGG | 0.581772 | 7_3:+36551891 | None:intergenic |
| GGCTAACACAACTCGAACAA+GGG | 0.583718 | 7_3:+36551529 | None:intergenic |
| GCCTAGCACATCAGATGCAG+TGG | 0.588657 | 7_3:+36551027 | None:intergenic |
| TCCACTGCATCTGATGTGCT+AGG | 0.594949 | 7_3:-36551028 | Msa1102700:CDS |
| AGGATAACGATTTGCTAGCA+TGG | 0.597463 | 7_3:+36550756 | None:intergenic |
| GAACATTTATGGAAGTTGGA+GGG | 0.598986 | 7_3:-36551915 | Msa1102700:CDS |
| AATGCGATTATGGGATGCAA+AGG | 0.600616 | 7_3:-36551834 | Msa1102700:CDS |
| GATGTGCTAGGCTTGTTCAA+AGG | 0.618046 | 7_3:-36551016 | Msa1102700:CDS |
| GTGAACCACCGTGAAACGCA+AGG | 0.619513 | 7_3:+36550705 | None:intergenic |
| AGAACAAAGCCTCTCATGGT+AGG | 0.634432 | 7_3:-36550822 | Msa1102700:CDS |
| GCAAAGGTACCTACCATGAG+AGG | 0.646700 | 7_3:+36550813 | None:intergenic |
| TATATGATTGGGTACTGGAG+AGG | 0.647630 | 7_3:+36551797 | None:intergenic |
| GGCAGAAATCTTGGAACCAG+CGG | 0.649586 | 7_3:-36551597 | Msa1102700:CDS |
| GTACCCGGTCTCAAAGACAC+TGG | 0.671559 | 7_3:-36551152 | Msa1102700:CDS |
| ACTAACAGCTGAAGATGACA+CGG | 0.685672 | 7_3:+36551508 | None:intergenic |
| AGTGTCCTTGCGTTTCACGG+TGG | 0.687838 | 7_3:-36550710 | Msa1102700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCATTTATATTTTTCAT+AGG | - | chr7_3:36551062-36551081 | Msa1102700:CDS | 10.0% |
| !! | TACAAATATATAATTACTTG+AGG | + | chr7_3:36551420-36551439 | None:intergenic | 15.0% |
| !! | GTAATAGTAATACTATAAAA+GGG | + | chr7_3:36551503-36551522 | None:intergenic | 15.0% |
| !! | AGTAATAGTAATACTATAAA+AGG | + | chr7_3:36551504-36551523 | None:intergenic | 15.0% |
| !!! | AATAATTGATAATGATGATT+TGG | - | chr7_3:36552032-36552051 | Msa1102700:intron | 15.0% |
| !! | ACAAACATGTTATTGAATTA+GGG | - | chr7_3:36551635-36551654 | Msa1102700:intron | 20.0% |
| !!! | TGTTAGTTTAATTAGCAATA+TGG | + | chr7_3:36551887-36551906 | None:intergenic | 20.0% |
| !! | ATATTGCTAATTAAACTAAC+AGG | - | chr7_3:36551886-36551905 | Msa1102700:CDS | 20.0% |
| !! | TATTGCTAATTAAACTAACA+GGG | - | chr7_3:36551887-36551906 | Msa1102700:CDS | 20.0% |
| ! | ATTAGAACAGTTAGAGATTT+AGG | - | chr7_3:36550768-36550787 | Msa1102700:CDS | 25.0% |
| ! | GTGAAAAGTGAAAATACATT+TGG | + | chr7_3:36550814-36550833 | None:intergenic | 25.0% |
| ! | CCTGCAAGTATATATAAAAA+TGG | + | chr7_3:36550863-36550882 | None:intergenic | 25.0% |
| !!! | CCATTTTTATATATACTTGC+AGG | - | chr7_3:36550860-36550879 | Msa1102700:CDS | 25.0% |
| ! | AGCATAAAGTTGAACATTTA+TGG | - | chr7_3:36550888-36550907 | Msa1102700:intron | 25.0% |
| ! | GGATCATTTGATATATGATT+GGG | + | chr7_3:36551031-36551050 | None:intergenic | 25.0% |
| ! | AGGATCATTTGATATATGAT+TGG | + | chr7_3:36551032-36551051 | None:intergenic | 25.0% |
| ! | TCATATATCAAATGATCCTA+AGG | - | chr7_3:36551033-36551052 | Msa1102700:CDS | 25.0% |
| ! | TAAATGAAATATCACACCTT+AGG | + | chr7_3:36551052-36551071 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTCCAAAATAC+AGG | - | chr7_3:36551196-36551215 | Msa1102700:intron | 25.0% |
| ! | AGATAATGAAATGTAATTCG+AGG | - | chr7_3:36551555-36551574 | Msa1102700:CDS | 25.0% |
| ! | GACAAACATGTTATTGAATT+AGG | - | chr7_3:36551634-36551653 | Msa1102700:intron | 25.0% |
| ! | ATTCTACCATCATTCATAAT+TGG | - | chr7_3:36551738-36551757 | Msa1102700:intron | 25.0% |
| ! | ATTGCTAATTAAACTAACAG+GGG | - | chr7_3:36551888-36551907 | Msa1102700:CDS | 25.0% |
| AGTTGAACATTTATGGAAGT+TGG | - | chr7_3:36550895-36550914 | Msa1102700:intron | 30.0% | |
| TTTCTTCCATTAAATCAGCT+TGG | + | chr7_3:36550949-36550968 | None:intergenic | 30.0% | |
| TTTGATATATGATTGGGTAC+TGG | + | chr7_3:36551025-36551044 | None:intergenic | 30.0% | |
| TGATTAATGCATGAGCTTAT+AGG | + | chr7_3:36551104-36551123 | None:intergenic | 30.0% | |
| TAATCAAAATCCTCACATCA+TGG | - | chr7_3:36551118-36551137 | Msa1102700:CDS | 30.0% | |
| GGGAAACATAGAAATTTCAA+TGG | - | chr7_3:36551908-36551927 | Msa1102700:CDS | 30.0% | |
| ACATAGAAATTTCAATGGCA+TGG | - | chr7_3:36551913-36551932 | Msa1102700:CDS | 30.0% | |
| GAATGCAAAGTATGTGTAAC+AGG | - | chr7_3:36550684-36550703 | Msa1102700:CDS | 35.0% | |
| ! | ATGAAGCGACTTCTTTTGTT+TGG | - | chr7_3:36550735-36550754 | Msa1102700:CDS | 35.0% |
| TGAACATTTATGGAAGTTGG+AGG | - | chr7_3:36550898-36550917 | Msa1102700:intron | 35.0% | |
| GAACATTTATGGAAGTTGGA+GGG | - | chr7_3:36550899-36550918 | Msa1102700:intron | 35.0% | |
| ! | ACTAGTCCAAGCTGATTTAA+TGG | - | chr7_3:36550940-36550959 | Msa1102700:intron | 35.0% |
| TGTATAATCTCCATGATGTG+AGG | + | chr7_3:36551131-36551150 | None:intergenic | 35.0% | |
| ! | CAAGATTTCTGCCTGTATTT+TGG | + | chr7_3:36551210-36551229 | None:intergenic | 35.0% |
| CAAAATACAGGCAGAAATCT+TGG | - | chr7_3:36551208-36551227 | Msa1102700:intron | 35.0% | |
| CATGTTATTGAATTAGGGCA+TGG | - | chr7_3:36551640-36551659 | Msa1102700:intron | 35.0% | |
| TGGGAATATTGCAATGAGAA+AGG | - | chr7_3:36551699-36551718 | Msa1102700:intron | 35.0% | |
| CAATGAGAAAGGAATAGACT+TGG | - | chr7_3:36551710-36551729 | Msa1102700:intron | 35.0% | |
| CTAGGTCCAATTATGAATGA+TGG | + | chr7_3:36551747-36551766 | None:intergenic | 35.0% | |
| CATAAATATGTTGGCAAGCT+AGG | + | chr7_3:36551765-36551784 | None:intergenic | 35.0% | |
| GCAGTGGAACATAAATATGT+TGG | + | chr7_3:36551774-36551793 | None:intergenic | 35.0% | |
| AGAAATTTCAATGGCATGGA+AGG | - | chr7_3:36551917-36551936 | Msa1102700:CDS | 35.0% | |
| !! | AGGCTTTGTTCTCATAAAGA+AGG | + | chr7_3:36551984-36552003 | None:intergenic | 35.0% |
| CAATTATTGCTGAACTGCAA+AGG | + | chr7_3:36552020-36552039 | None:intergenic | 35.0% | |
| ACTAGTTCGAGTCTTTCTGT+TGG | + | chr7_3:36550926-36550945 | None:intergenic | 40.0% | |
| TAGCTTCGACAATGCGATTA+TGG | - | chr7_3:36550970-36550989 | Msa1102700:intron | 40.0% | |
| AGCTTCGACAATGCGATTAT+GGG | - | chr7_3:36550971-36550990 | Msa1102700:intron | 40.0% | |
| AATGCGATTATGGGATGCAA+AGG | - | chr7_3:36550980-36550999 | Msa1102700:intron | 40.0% | |
| !! | TATATGATTGGGTACTGGAG+AGG | + | chr7_3:36551020-36551039 | None:intergenic | 40.0% |
| ACTAACAGCTGAAGATGACA+CGG | + | chr7_3:36551309-36551328 | None:intergenic | 40.0% | |
| GACTCGTCTATTGGTATGTT+TGG | + | chr7_3:36551350-36551369 | None:intergenic | 40.0% | |
| TACCAATAGACGAGTCATCT+TGG | - | chr7_3:36551354-36551373 | Msa1102700:intron | 40.0% | |
| TACTTGAGGAAATGTGTACC+TGG | + | chr7_3:36551406-36551425 | None:intergenic | 40.0% | |
| ATTTCAATGGCATGGAAGGA+TGG | - | chr7_3:36551921-36551940 | Msa1102700:CDS | 40.0% | |
| TTTCAATGGCATGGAAGGAT+GGG | - | chr7_3:36551922-36551941 | Msa1102700:CDS | 40.0% | |
| TATGAGAACAAAGCCTCTCA+TGG | - | chr7_3:36551988-36552007 | Msa1102700:intron | 40.0% | |
| !! | AGGATAACGATTTGCTAGCA+TGG | + | chr7_3:36552061-36552080 | None:intergenic | 40.0% |
| ATGCTAGCAAATCGTTATCC+TGG | - | chr7_3:36552060-36552079 | Msa1102700:CDS | 40.0% | |
| !! | ACACTCTACCTTTTGGGAAT+GGG | + | chr7_3:36552089-36552108 | None:intergenic | 40.0% |
| GTATGTGTAACAGGAGCTTC+AGG | - | chr7_3:36550693-36550712 | Msa1102700:CDS | 45.0% | |
| ! | AACAGGAGCTTCAGGCTTTT+TGG | - | chr7_3:36550701-36550720 | Msa1102700:CDS | 45.0% |
| !!! | CTTCAGGCTTTTTGGCTTCT+TGG | - | chr7_3:36550709-36550728 | Msa1102700:CDS | 45.0% |
| GCAACACATTTAGCGTACCT+TGG | + | chr7_3:36551244-36551263 | None:intergenic | 45.0% | |
| GGCTAACACAACTCGAACAA+GGG | + | chr7_3:36551288-36551307 | None:intergenic | 45.0% | |
| CTCCAAGATGACTCGTCTAT+TGG | + | chr7_3:36551359-36551378 | None:intergenic | 45.0% | |
| GGAATTGTGTCAGAAACTCC+AGG | - | chr7_3:36551385-36551404 | Msa1102700:intron | 45.0% | |
| TTGAATTAGGGCATGGTACC+CGG | - | chr7_3:36551647-36551666 | Msa1102700:intron | 45.0% | |
| ACTGGCAGAAAAAGCAGCTT+GGG | - | chr7_3:36551680-36551699 | Msa1102700:intron | 45.0% | |
| ! | GATGTGCTAGGCTTGTTCAA+AGG | - | chr7_3:36551798-36551817 | Msa1102700:CDS | 45.0% |
| AGAACAAAGCCTCTCATGGT+AGG | - | chr7_3:36551992-36552011 | Msa1102700:intron | 45.0% | |
| !! | GACACTCTACCTTTTGGGAA+TGG | + | chr7_3:36552090-36552109 | None:intergenic | 45.0% |
| ! | GCAAGGACACTCTACCTTTT+GGG | + | chr7_3:36552095-36552114 | None:intergenic | 45.0% |
| ! | TAGAGTGTCCTTGCGTTTCA+CGG | - | chr7_3:36552101-36552120 | Msa1102700:CDS | 45.0% |
| !!! | TTTTTTTTATATTTTACAAA+TGG | - | chr7_3:36551592-36551611 | Msa1102700:CDS | 5.0% |
| GGCAGAAATCTTGGAACCAG+CGG | - | chr7_3:36551217-36551236 | Msa1102700:intron | 50.0% | |
| AACACAACTCGAACAAGGGC+TGG | + | chr7_3:36551284-36551303 | None:intergenic | 50.0% | |
| CGGCTAACACAACTCGAACA+AGG | + | chr7_3:36551289-36551308 | None:intergenic | 50.0% | |
| CGAGTCATCTTGGAGCTCAT+AGG | - | chr7_3:36551364-36551383 | Msa1102700:intron | 50.0% | |
| !! | TCTGCCAGTGTCTTTGAGAC+CGG | + | chr7_3:36551669-36551688 | None:intergenic | 50.0% |
| CACTGGCAGAAAAAGCAGCT+TGG | - | chr7_3:36551679-36551698 | Msa1102700:intron | 50.0% | |
| TCCACTGCATCTGATGTGCT+AGG | - | chr7_3:36551786-36551805 | Msa1102700:CDS | 50.0% | |
| !! | GCAAAGGTACCTACCATGAG+AGG | + | chr7_3:36552004-36552023 | None:intergenic | 50.0% |
| !! | CCTTTTGGGAATGGGAAACC+AGG | + | chr7_3:36552081-36552100 | None:intergenic | 50.0% |
| CCTGGTTTCCCATTCCCAAA+AGG | - | chr7_3:36552078-36552097 | Msa1102700:CDS | 50.0% | |
| ! | CGCAAGGACACTCTACCTTT+TGG | + | chr7_3:36552096-36552115 | None:intergenic | 50.0% |
| ATCTTGGAACCAGCGGTCCA+AGG | - | chr7_3:36551224-36551243 | Msa1102700:intron | 55.0% | |
| TTTAGCGTACCTTGGACCGC+TGG | + | chr7_3:36551236-36551255 | None:intergenic | 55.0% | |
| GTACCCGGTCTCAAAGACAC+TGG | - | chr7_3:36551662-36551681 | Msa1102700:intron | 55.0% | |
| !! | CTGCCAGTGTCTTTGAGACC+GGG | + | chr7_3:36551668-36551687 | None:intergenic | 55.0% |
| GCCTAGCACATCAGATGCAG+TGG | + | chr7_3:36551790-36551809 | None:intergenic | 55.0% | |
| AGTGTCCTTGCGTTTCACGG+TGG | - | chr7_3:36552104-36552123 | Msa1102700:CDS | 55.0% | |
| GTGAACCACCGTGAAACGCA+AGG | + | chr7_3:36552112-36552131 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 36550681 | 36552155 | 36550681 | ID=Msa1102700;Name=Msa1102700 |
| chr7_3 | mRNA | 36550681 | 36552155 | 36550681 | ID=Msa1102700-mRNA-1;Parent=Msa1102700;Name=Msa1102700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.5|0.4|5|0|275 |
| chr7_3 | exon | 36552047 | 36552155 | 36552047 | ID=Msa1102700-mRNA-1:exon:7593;Parent=Msa1102700-mRNA-1 |
| chr7_3 | exon | 36551782 | 36551954 | 36551782 | ID=Msa1102700-mRNA-1:exon:7592;Parent=Msa1102700-mRNA-1 |
| chr7_3 | exon | 36551470 | 36551618 | 36551470 | ID=Msa1102700-mRNA-1:exon:7591;Parent=Msa1102700-mRNA-1 |
| chr7_3 | exon | 36551001 | 36551180 | 36551001 | ID=Msa1102700-mRNA-1:exon:7590;Parent=Msa1102700-mRNA-1 |
| chr7_3 | exon | 36550681 | 36550897 | 36550681 | ID=Msa1102700-mRNA-1:exon:7589;Parent=Msa1102700-mRNA-1 |
| chr7_3 | CDS | 36552047 | 36552155 | 36552047 | ID=Msa1102700-mRNA-1:cds;Parent=Msa1102700-mRNA-1 |
| chr7_3 | CDS | 36551782 | 36551954 | 36551782 | ID=Msa1102700-mRNA-1:cds;Parent=Msa1102700-mRNA-1 |
| chr7_3 | CDS | 36551470 | 36551618 | 36551470 | ID=Msa1102700-mRNA-1:cds;Parent=Msa1102700-mRNA-1 |
| chr7_3 | CDS | 36551001 | 36551180 | 36551001 | ID=Msa1102700-mRNA-1:cds;Parent=Msa1102700-mRNA-1 |
| chr7_3 | CDS | 36550681 | 36550897 | 36550681 | ID=Msa1102700-mRNA-1:cds;Parent=Msa1102700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
