Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105560 | AES79212.1 | 97.753 | 89 | 2 | 0 | 1 | 89 | 1 | 89 | 2.19e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105560 | sp|Q338G6|ILI7_ORYSJ | 42.105 | 76 | 44 | 0 | 12 | 87 | 15 | 90 | 1.92e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105560 | G7L2D1 | 97.753 | 89 | 2 | 0 | 1 | 89 | 1 | 89 | 1.05e-52 | 168 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1105560 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1021570 | Msa1105560 | 0.915057 | 9.245293e-85 | -8.615850e-47 |
| Msa1060310 | Msa1105560 | 0.925134 | 2.766322e-90 | -8.615850e-47 |
| Msa1105560 | Msa1148940 | 0.900878 | 4.713832e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105560 | MtrunA17_Chr7g0237771 | 97.753 | 89 | 2 | 0 | 1 | 89 | 1 | 89 | 2.02e-56 | 168 |
| Msa1105560 | MtrunA17_Chr8g0362131 | 50.746 | 67 | 32 | 1 | 10 | 76 | 15 | 80 | 3.29e-17 | 69.7 |
| Msa1105560 | MtrunA17_Chr3g0093001 | 50.794 | 63 | 31 | 0 | 12 | 74 | 17 | 79 | 5.07e-16 | 66.6 |
| Msa1105560 | MtrunA17_Chr5g0416431 | 46.970 | 66 | 35 | 0 | 11 | 76 | 16 | 81 | 5.67e-16 | 66.6 |
| Msa1105560 | MtrunA17_Chr7g0217141 | 43.836 | 73 | 41 | 0 | 2 | 74 | 6 | 78 | 1.55e-14 | 62.8 |
| Msa1105560 | MtrunA17_Chr6g0453041 | 49.206 | 63 | 32 | 0 | 12 | 74 | 15 | 77 | 1.86e-14 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105560 | AT1G26945.1 | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 2.04e-17 | 70.5 |
| Msa1105560 | AT3G47710.1 | 52.703 | 74 | 34 | 1 | 2 | 74 | 6 | 79 | 4.90e-17 | 69.7 |
| Msa1105560 | AT3G28857.1 | 47.945 | 73 | 37 | 1 | 3 | 74 | 6 | 78 | 7.00e-16 | 66.6 |
| Msa1105560 | AT5G39860.1 | 50.769 | 65 | 31 | 1 | 11 | 74 | 14 | 78 | 5.67e-15 | 64.3 |
| Msa1105560 | AT5G15160.1 | 53.226 | 62 | 28 | 1 | 16 | 76 | 20 | 81 | 1.08e-13 | 61.2 |
| Msa1105560 | AT1G74500.1 | 48.438 | 64 | 32 | 1 | 12 | 74 | 17 | 80 | 1.29e-13 | 60.8 |
Find 26 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAACATTGGATCATATT+AGG | 0.284722 | 7_3:-44116816 | Msa1105560:CDS |
| TAGCCACATCACAATCTATA+AGG | 0.298146 | 7_3:+44116609 | None:intergenic |
| AATAGACTGTAGAATTAAAA+AGG | 0.310346 | 7_3:+44116670 | None:intergenic |
| ATACCCTTGAGTTGTTTCTT+TGG | 0.331022 | 7_3:+44118327 | None:intergenic |
| CAATGTTTCCTGCAAGATCT+TGG | 0.360132 | 7_3:+44116828 | None:intergenic |
| TTGAATCTCTTGAGTTTCTC+TGG | 0.382021 | 7_3:+44118414 | None:intergenic |
| TGAGAGGCTAACACAATTGA+TGG | 0.413964 | 7_3:-44116764 | Msa1105560:CDS |
| ATCAGCCTCCAAGATCTTGC+AGG | 0.440449 | 7_3:-44116836 | Msa1105560:CDS |
| CTATAAGGGAAGGAAACATA+AGG | 0.484046 | 7_3:+44116624 | None:intergenic |
| CAAGATCTTGCAGGAAACAT+TGG | 0.497669 | 7_3:-44116827 | Msa1105560:CDS |
| AGCCACATCACAATCTATAA+GGG | 0.509284 | 7_3:+44116610 | None:intergenic |
| TGTTTCCTGCAAGATCTTGG+AGG | 0.509912 | 7_3:+44116831 | None:intergenic |
| TATAAGGGAAGGAAACATAA+GGG | 0.545314 | 7_3:+44116625 | None:intergenic |
| ATATTTAATAATTAAGAACA+AGG | 0.545635 | 7_3:-44116549 | Msa1105560:three_prime_UTR |
| TATTAGGAGGCTTCAGAAAG+AGG | 0.545892 | 7_3:-44116800 | Msa1105560:CDS |
| TTGTTTCTTTGGTTCAGCTG+AGG | 0.545919 | 7_3:+44118338 | None:intergenic |
| TTCCCTTATAGATTGTGATG+TGG | 0.561042 | 7_3:-44116612 | Msa1105560:three_prime_UTR |
| TATACATACATATACATGAT+GGG | 0.581615 | 7_3:+44116582 | None:intergenic |
| AAACATTGGATCATATTAGG+AGG | 0.601405 | 7_3:-44116813 | Msa1105560:CDS |
| ATATACATACATATACATGA+TGG | 0.604457 | 7_3:+44116581 | None:intergenic |
| ACATCACAATCTATAAGGGA+AGG | 0.609189 | 7_3:+44116614 | None:intergenic |
| TAGGAGGCTTCAGAAAGAGG+TGG | 0.622036 | 7_3:-44116797 | Msa1105560:CDS |
| TGAACCAAAGAAACAACTCA+AGG | 0.632348 | 7_3:-44118331 | Msa1105560:CDS |
| AGGTGGAAGATCTCAGTGAG+AGG | 0.651028 | 7_3:-44116780 | Msa1105560:CDS |
| AGATTAATGATCTTGTGTCA+AGG | 0.656005 | 7_3:-44118376 | Msa1105560:CDS |
| GAACCAAAGAAACAACTCAA+GGG | 0.668866 | 7_3:-44118330 | Msa1105560:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATACAAAAGTAAAAT+TGG | + | chr7_3:44116830-44116849 | None:intergenic | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_3:44118471-44118490 | Msa1105560:five_prime_UTR | 10.0% |
| !! | TATATATACAAAAGTAAAAT+TGG | + | chr7_3:44116830-44116849 | None:intergenic | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_3:44118471-44118490 | Msa1105560:five_prime_UTR | 10.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_3:44116935-44116954 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_3:44116958-44116977 | None:intergenic | 15.0% |
| !!! | TAAGAAAATAATTTTACCTT+TGG | - | chr7_3:44117056-44117075 | Msa1105560:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_3:44117169-44117188 | None:intergenic | 15.0% |
| !! | TTAATTATAACACAATTCAA+AGG | + | chr7_3:44117246-44117265 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTAAGGAA+AGG | + | chr7_3:44117734-44117753 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_3:44118030-44118049 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_3:44118086-44118105 | None:intergenic | 15.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_3:44116935-44116954 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_3:44116958-44116977 | None:intergenic | 15.0% |
| !!! | TAAGAAAATAATTTTACCTT+TGG | - | chr7_3:44117056-44117075 | Msa1105560:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_3:44117169-44117188 | None:intergenic | 15.0% |
| !! | TTAATTATAACACAATTCAA+AGG | + | chr7_3:44117246-44117265 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTAAGGAA+AGG | + | chr7_3:44117734-44117753 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_3:44118030-44118049 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_3:44118086-44118105 | None:intergenic | 15.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_3:44116561-44116580 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_3:44117600-44117619 | Msa1105560:intron | 20.0% |
| !!! | TTCGAAACATATCTTTTTAT+TGG | + | chr7_3:44117661-44117680 | None:intergenic | 20.0% |
| !! | CAGAAAAAGATATATAGTAT+AGG | + | chr7_3:44117984-44118003 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_3:44118116-44118135 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_3:44118117-44118136 | None:intergenic | 20.0% |
| !! | AATAGACTGTAGAATTAAAA+AGG | + | chr7_3:44118353-44118372 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_3:44118441-44118460 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_3:44118442-44118461 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_3:44116561-44116580 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_3:44117600-44117619 | Msa1105560:intron | 20.0% |
| !!! | TTCGAAACATATCTTTTTAT+TGG | + | chr7_3:44117661-44117680 | None:intergenic | 20.0% |
| !! | CAGAAAAAGATATATAGTAT+AGG | + | chr7_3:44117984-44118003 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_3:44118116-44118135 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_3:44118117-44118136 | None:intergenic | 20.0% |
| !! | AATAGACTGTAGAATTAAAA+AGG | + | chr7_3:44118353-44118372 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_3:44118441-44118460 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_3:44118442-44118461 | None:intergenic | 20.0% |
| !! | ATATGAATTCACTAGTTTCT+TGG | + | chr7_3:44116736-44116755 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_3:44116804-44116823 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_3:44116810-44116829 | None:intergenic | 25.0% |
| !! | TGTCATTTAATACAAACCAA+AGG | + | chr7_3:44117075-44117094 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_3:44117152-44117171 | None:intergenic | 25.0% |
| ! | ATACAAGTTTAGATTGCAAT+TGG | - | chr7_3:44117266-44117285 | Msa1105560:intron | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_3:44117338-44117357 | Msa1105560:intron | 25.0% |
| !! | GTCACACTAACAATTTTAAA+GGG | + | chr7_3:44117962-44117981 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_3:44117997-44118016 | Msa1105560:intron | 25.0% |
| !! | ATATGAATTCACTAGTTTCT+TGG | + | chr7_3:44116736-44116755 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_3:44116804-44116823 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_3:44116810-44116829 | None:intergenic | 25.0% |
| !! | TGTCATTTAATACAAACCAA+AGG | + | chr7_3:44117075-44117094 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_3:44117152-44117171 | None:intergenic | 25.0% |
| ! | ATACAAGTTTAGATTGCAAT+TGG | - | chr7_3:44117266-44117285 | Msa1105560:intron | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_3:44117338-44117357 | Msa1105560:intron | 25.0% |
| !! | GTCACACTAACAATTTTAAA+GGG | + | chr7_3:44117962-44117981 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_3:44117997-44118016 | Msa1105560:intron | 25.0% |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_3:44116644-44116663 | Msa1105560:three_prime_UTR | 30.0% | |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_3:44116847-44116866 | Msa1105560:intron | 30.0% | |
| GTAAGTAAAAGACGACAATT+TGG | - | chr7_3:44117100-44117119 | Msa1105560:intron | 30.0% | |
| ! | GGTCACACTAACAATTTTAA+AGG | + | chr7_3:44117963-44117982 | None:intergenic | 30.0% |
| AGGAAACATTGGATCATATT+AGG | - | chr7_3:44118204-44118223 | Msa1105560:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_3:44118207-44118226 | Msa1105560:intron | 30.0% | |
| TATAAGGGAAGGAAACATAA+GGG | + | chr7_3:44118398-44118417 | None:intergenic | 30.0% | |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_3:44116644-44116663 | Msa1105560:three_prime_UTR | 30.0% | |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_3:44116847-44116866 | Msa1105560:intron | 30.0% | |
| GTAAGTAAAAGACGACAATT+TGG | - | chr7_3:44117100-44117119 | Msa1105560:intron | 30.0% | |
| ! | GGTCACACTAACAATTTTAA+AGG | + | chr7_3:44117963-44117982 | None:intergenic | 30.0% |
| AGGAAACATTGGATCATATT+AGG | - | chr7_3:44118204-44118223 | Msa1105560:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_3:44118207-44118226 | Msa1105560:intron | 30.0% | |
| TATAAGGGAAGGAAACATAA+GGG | + | chr7_3:44118398-44118417 | None:intergenic | 30.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_3:44116609-44116628 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_3:44116689-44116708 | Msa1105560:exon | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_3:44116690-44116709 | Msa1105560:exon | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_3:44116696-44116715 | None:intergenic | 35.0% |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_3:44117383-44117402 | None:intergenic | 35.0% | |
| AGTCGTATAAGCCAAACAAT+TGG | + | chr7_3:44117404-44117423 | None:intergenic | 35.0% | |
| ! | ACATAGACCCGAAAGTATAA+AGG | - | chr7_3:44117764-44117783 | Msa1105560:intron | 35.0% |
| ! | CATAGACCCGAAAGTATAAA+GGG | - | chr7_3:44117765-44117784 | Msa1105560:intron | 35.0% |
| TCAGTACCCTTTATACTTTC+GGG | + | chr7_3:44117774-44117793 | None:intergenic | 35.0% | |
| CTCAGTACCCTTTATACTTT+CGG | + | chr7_3:44117775-44117794 | None:intergenic | 35.0% | |
| TAAGGGAGAAAAAGAGCAAT+AGG | + | chr7_3:44118381-44118400 | None:intergenic | 35.0% | |
| CTATAAGGGAAGGAAACATA+AGG | + | chr7_3:44118399-44118418 | None:intergenic | 35.0% | |
| ACATCACAATCTATAAGGGA+AGG | + | chr7_3:44118409-44118428 | None:intergenic | 35.0% | |
| TTCCCTTATAGATTGTGATG+TGG | - | chr7_3:44118408-44118427 | Msa1105560:CDS | 35.0% | |
| AGCCACATCACAATCTATAA+GGG | + | chr7_3:44118413-44118432 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCTATA+AGG | + | chr7_3:44118414-44118433 | None:intergenic | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_3:44116609-44116628 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_3:44116689-44116708 | Msa1105560:exon | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_3:44116690-44116709 | Msa1105560:exon | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_3:44116696-44116715 | None:intergenic | 35.0% |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_3:44117383-44117402 | None:intergenic | 35.0% | |
| AGTCGTATAAGCCAAACAAT+TGG | + | chr7_3:44117404-44117423 | None:intergenic | 35.0% | |
| ! | ACATAGACCCGAAAGTATAA+AGG | - | chr7_3:44117764-44117783 | Msa1105560:intron | 35.0% |
| ! | CATAGACCCGAAAGTATAAA+GGG | - | chr7_3:44117765-44117784 | Msa1105560:intron | 35.0% |
| TCAGTACCCTTTATACTTTC+GGG | + | chr7_3:44117774-44117793 | None:intergenic | 35.0% | |
| CTCAGTACCCTTTATACTTT+CGG | + | chr7_3:44117775-44117794 | None:intergenic | 35.0% | |
| TAAGGGAGAAAAAGAGCAAT+AGG | + | chr7_3:44118381-44118400 | None:intergenic | 35.0% | |
| CTATAAGGGAAGGAAACATA+AGG | + | chr7_3:44118399-44118418 | None:intergenic | 35.0% | |
| ACATCACAATCTATAAGGGA+AGG | + | chr7_3:44118409-44118428 | None:intergenic | 35.0% | |
| TTCCCTTATAGATTGTGATG+TGG | - | chr7_3:44118408-44118427 | Msa1105560:CDS | 35.0% | |
| AGCCACATCACAATCTATAA+GGG | + | chr7_3:44118413-44118432 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCTATA+AGG | + | chr7_3:44118414-44118433 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_3:44116685-44116704 | None:intergenic | 40.0% |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_3:44117119-44117138 | Msa1105560:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_3:44117390-44117409 | Msa1105560:intron | 40.0% | |
| ! | AAAGAAGACCTCTCTAGAGA+CGG | - | chr7_3:44117506-44117525 | Msa1105560:intron | 40.0% |
| ! | TAATTCTTCCGTCTCTAGAG+AGG | + | chr7_3:44117517-44117536 | None:intergenic | 40.0% |
| TGCGTTACTAACACTCTTCA+TGG | - | chr7_3:44117685-44117704 | Msa1105560:intron | 40.0% | |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_3:44118195-44118214 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_3:44118193-44118212 | Msa1105560:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_3:44118220-44118239 | Msa1105560:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_3:44118256-44118275 | Msa1105560:intron | 40.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_3:44116685-44116704 | None:intergenic | 40.0% |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_3:44117119-44117138 | Msa1105560:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_3:44117390-44117409 | Msa1105560:intron | 40.0% | |
| ! | AAAGAAGACCTCTCTAGAGA+CGG | - | chr7_3:44117506-44117525 | Msa1105560:intron | 40.0% |
| ! | TAATTCTTCCGTCTCTAGAG+AGG | + | chr7_3:44117517-44117536 | None:intergenic | 40.0% |
| TGCGTTACTAACACTCTTCA+TGG | - | chr7_3:44117685-44117704 | Msa1105560:intron | 40.0% | |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_3:44118195-44118214 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_3:44118193-44118212 | Msa1105560:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_3:44118220-44118239 | Msa1105560:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_3:44118256-44118275 | Msa1105560:intron | 40.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_3:44117127-44117146 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_3:44117124-44117143 | Msa1105560:intron | 45.0% |
| ! | GTCTCTAGAGAGGTCTTCTT+TGG | + | chr7_3:44117507-44117526 | None:intergenic | 45.0% |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_3:44118192-44118211 | None:intergenic | 45.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_3:44117127-44117146 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_3:44117124-44117143 | Msa1105560:intron | 45.0% |
| ! | GTCTCTAGAGAGGTCTTCTT+TGG | + | chr7_3:44117507-44117526 | None:intergenic | 45.0% |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_3:44118192-44118211 | None:intergenic | 45.0% | |
| !!! | TATTTTAAAAAAAAATACTT+AGG | - | chr7_3:44116900-44116919 | Msa1105560:intron | 5.0% |
| !!! | TTTTTGTTTTTTTTTTTTTA+AGG | + | chr7_3:44117739-44117758 | None:intergenic | 5.0% |
| !!! | TATTTTAAAAAAAAATACTT+AGG | - | chr7_3:44116900-44116919 | Msa1105560:intron | 5.0% |
| !!! | TTTTTGTTTTTTTTTTTTTA+AGG | + | chr7_3:44117739-44117758 | None:intergenic | 5.0% |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_3:44118184-44118203 | Msa1105560:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_3:44118223-44118242 | Msa1105560:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_3:44118240-44118259 | Msa1105560:intron | 50.0% | |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_3:44118184-44118203 | Msa1105560:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_3:44118223-44118242 | Msa1105560:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_3:44118240-44118259 | Msa1105560:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 44116543 | 44118499 | 44116543 | ID=Msa1105560;Name=Msa1105560 |
| chr7_3 | mRNA | 44116543 | 44118499 | 44116543 | ID=Msa1105560-mRNA-1;Parent=Msa1105560;Name=Msa1105560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55|1|1|1|1|1|2|162|89 |
| chr7_3 | exon | 44116543 | 44116860 | 44116543 | ID=Msa1105560-mRNA-1:exon:9113;Parent=Msa1105560-mRNA-1 |
| chr7_3 | exon | 44118331 | 44118499 | 44118331 | ID=Msa1105560-mRNA-1:exon:9112;Parent=Msa1105560-mRNA-1 |
| chr7_3 | five_prime_UTR | 44118445 | 44118499 | 44118445 | ID=Msa1105560-mRNA-1:five_prime_utr;Parent=Msa1105560-mRNA-1 |
| chr7_3 | CDS | 44118331 | 44118444 | 44118331 | ID=Msa1105560-mRNA-1:cds;Parent=Msa1105560-mRNA-1 |
| chr7_3 | CDS | 44116705 | 44116860 | 44116705 | ID=Msa1105560-mRNA-1:cds;Parent=Msa1105560-mRNA-1 |
| chr7_3 | three_prime_UTR | 44116543 | 44116704 | 44116543 | ID=Msa1105560-mRNA-1:three_prime_utr;Parent=Msa1105560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
