Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148940 | AES79212.1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 5.33e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148940 | sp|Q8GW32|PRE6_ARATH | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 1.58e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148940 | G7L2D1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 2.55e-52 | 167 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1148940 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1148940 | 0.823974 | 1.037305e-53 | -8.615850e-47 |
| Msa0158600 | Msa1148940 | 0.814694 | 1.352139e-51 | -8.615850e-47 |
| Msa0392420 | Msa1148940 | 0.822551 | 2.229998e-53 | -8.615850e-47 |
| Msa0392460 | Msa1148940 | 0.823679 | 1.216690e-53 | -8.615850e-47 |
| Msa0392490 | Msa1148940 | 0.817879 | 2.623057e-52 | -8.615850e-47 |
| Msa1005870 | Msa1148940 | 0.820892 | 5.395204e-53 | -8.615850e-47 |
| Msa1021570 | Msa1148940 | 0.937368 | 3.880756e-98 | -8.615850e-47 |
| Msa1047980 | Msa1148940 | 0.806022 | 1.006431e-49 | -8.615850e-47 |
| Msa1060310 | Msa1148940 | 0.942491 | 6.544269e-102 | -8.615850e-47 |
| Msa1092010 | Msa1148940 | 0.816477 | 5.420703e-52 | -8.615850e-47 |
| Msa1105560 | Msa1148940 | 0.900878 | 4.713832e-78 | -8.615850e-47 |
| Msa0344570 | Msa1148940 | 0.801380 | 9.253108e-49 | -8.615850e-47 |
| Msa1148940 | Msa1374550 | 0.841213 | 5.446543e-58 | -8.615850e-47 |
| Msa0487570 | Msa1148940 | 0.818062 | 2.384387e-52 | -8.615850e-47 |
| Msa0487630 | Msa1148940 | 0.821414 | 4.089568e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148940 | MtrunA17_Chr7g0237771 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 4.90e-56 | 167 |
| Msa1148940 | MtrunA17_Chr8g0362131 | 50.746 | 67 | 32 | 1 | 10 | 76 | 15 | 80 | 2.98e-17 | 69.7 |
| Msa1148940 | MtrunA17_Chr3g0093001 | 50.794 | 63 | 31 | 0 | 12 | 74 | 17 | 79 | 4.40e-16 | 67.0 |
| Msa1148940 | MtrunA17_Chr5g0416431 | 46.970 | 66 | 35 | 0 | 11 | 76 | 16 | 81 | 5.49e-16 | 66.6 |
| Msa1148940 | MtrunA17_Chr6g0453041 | 49.206 | 63 | 32 | 0 | 12 | 74 | 15 | 77 | 1.67e-14 | 62.8 |
| Msa1148940 | MtrunA17_Chr7g0217141 | 43.836 | 73 | 41 | 0 | 2 | 74 | 6 | 78 | 2.11e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1148940 | AT1G26945.1 | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 1.60e-17 | 70.9 |
| Msa1148940 | AT3G47710.1 | 53.521 | 71 | 32 | 1 | 5 | 74 | 9 | 79 | 6.29e-17 | 69.3 |
| Msa1148940 | AT3G28857.1 | 47.436 | 78 | 37 | 2 | 1 | 74 | 1 | 78 | 1.19e-15 | 66.2 |
| Msa1148940 | AT5G39860.1 | 50.769 | 65 | 31 | 1 | 11 | 74 | 14 | 78 | 6.18e-15 | 64.3 |
| Msa1148940 | AT5G15160.1 | 53.226 | 62 | 28 | 1 | 16 | 76 | 20 | 81 | 1.10e-13 | 61.2 |
| Msa1148940 | AT1G74500.1 | 48.438 | 64 | 32 | 1 | 12 | 74 | 17 | 80 | 1.14e-13 | 61.2 |
Find 26 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAACATTGGATCATATT+AGG | 0.284722 | 7_4:-29578936 | Msa1148940:CDS |
| TAGCCACATCACAATCAATA+AGG | 0.310279 | 7_4:+29578747 | None:intergenic |
| AATAGATTGTAGAATTAAAA+AGG | 0.313928 | 7_4:+29578790 | None:intergenic |
| ATACCCTTGAGTTGTTTCTT+TGG | 0.331022 | 7_4:+29580465 | None:intergenic |
| CAATGTTTCCTGCAAGATCT+TGG | 0.360132 | 7_4:+29578948 | None:intergenic |
| TTGAATCTCTTGAGTTTCTC+TGG | 0.365643 | 7_4:+29580552 | None:intergenic |
| TGAGAGGCTAACACAATTGA+TGG | 0.413964 | 7_4:-29578884 | Msa1148940:CDS |
| ATCAGCCTCCAAGATCTTGC+AGG | 0.440449 | 7_4:-29578956 | Msa1148940:CDS |
| CAAGATCTTGCAGGAAACAT+TGG | 0.497669 | 7_4:-29578947 | Msa1148940:CDS |
| TGTTTCCTGCAAGATCTTGG+AGG | 0.509912 | 7_4:+29578951 | None:intergenic |
| TTCCCTTATTGATTGTGATG+TGG | 0.517223 | 7_4:-29578750 | Msa1148940:three_prime_UTR |
| AGCCACATCACAATCAATAA+GGG | 0.527392 | 7_4:+29578748 | None:intergenic |
| TAAGAAAAGAGAGTCATGTC+TGG | 0.537278 | 7_4:-29580575 | Msa1148940:exon |
| CAATAAGGGAAGGAAACATA+AGG | 0.545153 | 7_4:+29578762 | None:intergenic |
| ATATTTAATAATTAAGAACA+AGG | 0.545635 | 7_4:-29578687 | Msa1148940:three_prime_UTR |
| TATTAGGAGGCTTCAGAAAG+AGG | 0.545892 | 7_4:-29578920 | Msa1148940:CDS |
| TTGTTTCTTTGGTTCAGCTG+AGG | 0.545919 | 7_4:+29580476 | None:intergenic |
| TATACATACATATACATGAT+GGG | 0.579176 | 7_4:+29578720 | None:intergenic |
| AAACATTGGATCATATTAGG+AGG | 0.601405 | 7_4:-29578933 | Msa1148940:CDS |
| ATATACATACATATACATGA+TGG | 0.602018 | 7_4:+29578719 | None:intergenic |
| TAGGAGGCTTCAGAAAGAGG+TGG | 0.622036 | 7_4:-29578917 | Msa1148940:CDS |
| TGAACCAAAGAAACAACTCA+AGG | 0.632348 | 7_4:-29580469 | Msa1148940:CDS |
| ACATCACAATCAATAAGGGA+AGG | 0.638985 | 7_4:+29578752 | None:intergenic |
| AGGTGGAAGATCTCAGTGAG+AGG | 0.651028 | 7_4:-29578900 | Msa1148940:CDS |
| AGATTAATGATCTTGTGTCA+AGG | 0.656005 | 7_4:-29580514 | Msa1148940:CDS |
| GAACCAAAGAAACAACTCAA+GGG | 0.668866 | 7_4:-29580468 | Msa1148940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTACAAAAAATATTATAAA+AGG | - | chr7_4:29578686-29578705 | Msa1148940:three_prime_UTR | 10.0% |
| !! | TATATATACAAAAGTAAAAT+TGG | + | chr7_4:29578981-29579000 | None:intergenic | 10.0% |
| !!! | TAAACATAATATCTTTTTAT+TGG | + | chr7_4:29579814-29579833 | None:intergenic | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_4:29580622-29580641 | Msa1148940:five_prime_UTR | 10.0% |
| !! | ACTACAAAAAATATTATAAA+AGG | - | chr7_4:29578686-29578705 | Msa1148940:three_prime_UTR | 10.0% |
| !! | TATATATACAAAAGTAAAAT+TGG | + | chr7_4:29578981-29579000 | None:intergenic | 10.0% |
| !!! | TAAACATAATATCTTTTTAT+TGG | + | chr7_4:29579814-29579833 | None:intergenic | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_4:29580622-29580641 | Msa1148940:five_prime_UTR | 10.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_4:29579087-29579106 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_4:29579110-29579129 | None:intergenic | 15.0% |
| !!! | ATAAGAAATAATTTTACCTT+TGG | - | chr7_4:29579211-29579230 | Msa1148940:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_4:29579324-29579343 | None:intergenic | 15.0% |
| !!! | AGTAATGTAAGAATTTTAAA+GGG | + | chr7_4:29580138-29580157 | None:intergenic | 15.0% |
| !!! | TAGTAATGTAAGAATTTTAA+AGG | + | chr7_4:29580139-29580158 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_4:29580199-29580218 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_4:29580255-29580274 | None:intergenic | 15.0% |
| !! | AATAGATTGTAGAATTAAAA+AGG | + | chr7_4:29580522-29580541 | None:intergenic | 15.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_4:29579087-29579106 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_4:29579110-29579129 | None:intergenic | 15.0% |
| !!! | ATAAGAAATAATTTTACCTT+TGG | - | chr7_4:29579211-29579230 | Msa1148940:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_4:29579324-29579343 | None:intergenic | 15.0% |
| !!! | AGTAATGTAAGAATTTTAAA+GGG | + | chr7_4:29580138-29580157 | None:intergenic | 15.0% |
| !!! | TAGTAATGTAAGAATTTTAA+AGG | + | chr7_4:29580139-29580158 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_4:29580199-29580218 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_4:29580255-29580274 | None:intergenic | 15.0% |
| !! | AATAGATTGTAGAATTAAAA+AGG | + | chr7_4:29580522-29580541 | None:intergenic | 15.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_4:29578712-29578731 | None:intergenic | 20.0% |
| !! | TTAATTAGAACACAATTCAA+AGG | + | chr7_4:29579401-29579420 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_4:29579753-29579772 | Msa1148940:intron | 20.0% |
| !!! | TTCGAAAGATATCTTTTTAT+TGG | + | chr7_4:29579845-29579864 | None:intergenic | 20.0% |
| !!! | GTTTTTGTGTTTTTTTTTGA+AGG | + | chr7_4:29579922-29579941 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_4:29580285-29580304 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_4:29580286-29580305 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_4:29580592-29580611 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_4:29580593-29580612 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_4:29578712-29578731 | None:intergenic | 20.0% |
| !! | TTAATTAGAACACAATTCAA+AGG | + | chr7_4:29579401-29579420 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_4:29579753-29579772 | Msa1148940:intron | 20.0% |
| !!! | TTCGAAAGATATCTTTTTAT+TGG | + | chr7_4:29579845-29579864 | None:intergenic | 20.0% |
| !!! | GTTTTTGTGTTTTTTTTTGA+AGG | + | chr7_4:29579922-29579941 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_4:29580285-29580304 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_4:29580286-29580305 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_4:29580592-29580611 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_4:29580593-29580612 | None:intergenic | 20.0% |
| !! | ATATGAATTCACTAGTTTCT+TGG | + | chr7_4:29578887-29578906 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_4:29578955-29578974 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_4:29578961-29578980 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_4:29579307-29579326 | None:intergenic | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_4:29579493-29579512 | Msa1148940:intron | 25.0% |
| !!! | TGTGTTTTTTTTTGAAGGAA+AGG | + | chr7_4:29579917-29579936 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_4:29580166-29580185 | Msa1148940:intron | 25.0% |
| !! | ATATGAATTCACTAGTTTCT+TGG | + | chr7_4:29578887-29578906 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_4:29578955-29578974 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_4:29578961-29578980 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_4:29579307-29579326 | None:intergenic | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_4:29579493-29579512 | Msa1148940:intron | 25.0% |
| !!! | TGTGTTTTTTTTTGAAGGAA+AGG | + | chr7_4:29579917-29579936 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_4:29580166-29580185 | Msa1148940:intron | 25.0% |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_4:29578795-29578814 | Msa1148940:three_prime_UTR | 30.0% | |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_4:29578998-29579017 | Msa1148940:intron | 30.0% | |
| TGTCATGTAATACAAACCAA+AGG | + | chr7_4:29579230-29579249 | None:intergenic | 30.0% | |
| GTAAGTAAAAGACGACAAAT+TGG | - | chr7_4:29579255-29579274 | Msa1148940:intron | 30.0% | |
| AGGTGATAAACGTGATAAAT+AGG | + | chr7_4:29579381-29579400 | None:intergenic | 30.0% | |
| AGGAAACATTGGATCATATT+AGG | - | chr7_4:29580373-29580392 | Msa1148940:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_4:29580376-29580395 | Msa1148940:intron | 30.0% | |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_4:29578795-29578814 | Msa1148940:three_prime_UTR | 30.0% | |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_4:29578998-29579017 | Msa1148940:intron | 30.0% | |
| TGTCATGTAATACAAACCAA+AGG | + | chr7_4:29579230-29579249 | None:intergenic | 30.0% | |
| GTAAGTAAAAGACGACAAAT+TGG | - | chr7_4:29579255-29579274 | Msa1148940:intron | 30.0% | |
| AGGTGATAAACGTGATAAAT+AGG | + | chr7_4:29579381-29579400 | None:intergenic | 30.0% | |
| AGGAAACATTGGATCATATT+AGG | - | chr7_4:29580373-29580392 | Msa1148940:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_4:29580376-29580395 | Msa1148940:intron | 30.0% | |
| TAAGAAAAGAGAGTCATGTC+TGG | - | chr7_4:29578734-29578753 | Msa1148940:three_prime_UTR | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_4:29578760-29578779 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_4:29578840-29578859 | Msa1148940:CDS | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_4:29578841-29578860 | Msa1148940:CDS | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_4:29578847-29578866 | None:intergenic | 35.0% |
| AGACGAGTTTAGATTGCAAT+TGG | - | chr7_4:29579421-29579440 | Msa1148940:intron | 35.0% | |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_4:29579538-29579557 | None:intergenic | 35.0% | |
| AGTCGTTTAAGCCAAACAAT+TGG | + | chr7_4:29579559-29579578 | None:intergenic | 35.0% | |
| ! | ACATAGACCCGAAAGTATAA+AGG | - | chr7_4:29579940-29579959 | Msa1148940:intron | 35.0% |
| ! | CATAGACCCGAAAGTATAAA+GGG | - | chr7_4:29579941-29579960 | Msa1148940:intron | 35.0% |
| TCAGTACCCTTTATACTTTC+GGG | + | chr7_4:29579950-29579969 | None:intergenic | 35.0% | |
| CTCAGTACCCTTTATACTTT+CGG | + | chr7_4:29579951-29579970 | None:intergenic | 35.0% | |
| CAATAAGGGAAGGAAACATA+AGG | + | chr7_4:29580550-29580569 | None:intergenic | 35.0% | |
| ACATCACAATCAATAAGGGA+AGG | + | chr7_4:29580560-29580579 | None:intergenic | 35.0% | |
| ! | TTCCCTTATTGATTGTGATG+TGG | - | chr7_4:29580559-29580578 | Msa1148940:CDS | 35.0% |
| AGCCACATCACAATCAATAA+GGG | + | chr7_4:29580564-29580583 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCAATA+AGG | + | chr7_4:29580565-29580584 | None:intergenic | 35.0% | |
| TAAGAAAAGAGAGTCATGTC+TGG | - | chr7_4:29578734-29578753 | Msa1148940:three_prime_UTR | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_4:29578760-29578779 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_4:29578840-29578859 | Msa1148940:CDS | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_4:29578841-29578860 | Msa1148940:CDS | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_4:29578847-29578866 | None:intergenic | 35.0% |
| AGACGAGTTTAGATTGCAAT+TGG | - | chr7_4:29579421-29579440 | Msa1148940:intron | 35.0% | |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_4:29579538-29579557 | None:intergenic | 35.0% | |
| AGTCGTTTAAGCCAAACAAT+TGG | + | chr7_4:29579559-29579578 | None:intergenic | 35.0% | |
| ! | ACATAGACCCGAAAGTATAA+AGG | - | chr7_4:29579940-29579959 | Msa1148940:intron | 35.0% |
| ! | CATAGACCCGAAAGTATAAA+GGG | - | chr7_4:29579941-29579960 | Msa1148940:intron | 35.0% |
| TCAGTACCCTTTATACTTTC+GGG | + | chr7_4:29579950-29579969 | None:intergenic | 35.0% | |
| CTCAGTACCCTTTATACTTT+CGG | + | chr7_4:29579951-29579970 | None:intergenic | 35.0% | |
| CAATAAGGGAAGGAAACATA+AGG | + | chr7_4:29580550-29580569 | None:intergenic | 35.0% | |
| ACATCACAATCAATAAGGGA+AGG | + | chr7_4:29580560-29580579 | None:intergenic | 35.0% | |
| ! | TTCCCTTATTGATTGTGATG+TGG | - | chr7_4:29580559-29580578 | Msa1148940:CDS | 35.0% |
| AGCCACATCACAATCAATAA+GGG | + | chr7_4:29580564-29580583 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCAATA+AGG | + | chr7_4:29580565-29580584 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_4:29578836-29578855 | None:intergenic | 40.0% |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_4:29579274-29579293 | Msa1148940:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_4:29579545-29579564 | Msa1148940:intron | 40.0% | |
| ! | AAAGAAGACCTCTCTAGAGA+CGG | - | chr7_4:29579661-29579680 | Msa1148940:intron | 40.0% |
| ! | TAATTCTTCCGTCTCTAGAG+AGG | + | chr7_4:29579672-29579691 | None:intergenic | 40.0% |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_4:29580364-29580383 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_4:29580362-29580381 | Msa1148940:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_4:29580389-29580408 | Msa1148940:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_4:29580425-29580444 | Msa1148940:intron | 40.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_4:29578836-29578855 | None:intergenic | 40.0% |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_4:29579274-29579293 | Msa1148940:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_4:29579545-29579564 | Msa1148940:intron | 40.0% | |
| ! | AAAGAAGACCTCTCTAGAGA+CGG | - | chr7_4:29579661-29579680 | Msa1148940:intron | 40.0% |
| ! | TAATTCTTCCGTCTCTAGAG+AGG | + | chr7_4:29579672-29579691 | None:intergenic | 40.0% |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_4:29580364-29580383 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_4:29580362-29580381 | Msa1148940:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_4:29580389-29580408 | Msa1148940:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_4:29580425-29580444 | Msa1148940:intron | 40.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_4:29579282-29579301 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_4:29579279-29579298 | Msa1148940:intron | 45.0% |
| ! | GTCTCTAGAGAGGTCTTCTT+TGG | + | chr7_4:29579662-29579681 | None:intergenic | 45.0% |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_4:29580361-29580380 | None:intergenic | 45.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_4:29579282-29579301 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_4:29579279-29579298 | Msa1148940:intron | 45.0% |
| ! | GTCTCTAGAGAGGTCTTCTT+TGG | + | chr7_4:29579662-29579681 | None:intergenic | 45.0% |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_4:29580361-29580380 | None:intergenic | 45.0% | |
| !!! | ATTTTTAAAAAAAAATACTT+AGG | - | chr7_4:29579052-29579071 | Msa1148940:intron | 5.0% |
| !!! | ATTTTTAAAAAAAAATACTT+AGG | - | chr7_4:29579052-29579071 | Msa1148940:intron | 5.0% |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_4:29580353-29580372 | Msa1148940:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_4:29580392-29580411 | Msa1148940:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_4:29580409-29580428 | Msa1148940:intron | 50.0% | |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_4:29580353-29580372 | Msa1148940:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_4:29580392-29580411 | Msa1148940:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_4:29580409-29580428 | Msa1148940:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 29578681 | 29580650 | 29578681 | ID=Msa1148940;Name=Msa1148940 |
| chr7_4 | mRNA | 29578681 | 29580650 | 29578681 | ID=Msa1148940-mRNA-1;Parent=Msa1148940;Name=Msa1148940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=68|1|1|1|1|1|2|144|89 |
| chr7_4 | exon | 29578681 | 29578980 | 29578681 | ID=Msa1148940-mRNA-1:exon:7270;Parent=Msa1148940-mRNA-1 |
| chr7_4 | exon | 29580469 | 29580650 | 29580469 | ID=Msa1148940-mRNA-1:exon:7269;Parent=Msa1148940-mRNA-1 |
| chr7_4 | five_prime_UTR | 29580583 | 29580650 | 29580583 | ID=Msa1148940-mRNA-1:five_prime_utr;Parent=Msa1148940-mRNA-1 |
| chr7_4 | CDS | 29580469 | 29580582 | 29580469 | ID=Msa1148940-mRNA-1:cds;Parent=Msa1148940-mRNA-1 |
| chr7_4 | CDS | 29578825 | 29578980 | 29578825 | ID=Msa1148940-mRNA-1:cds;Parent=Msa1148940-mRNA-1 |
| chr7_4 | three_prime_UTR | 29578681 | 29578824 | 29578681 | ID=Msa1148940-mRNA-1:three_prime_utr;Parent=Msa1148940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
