Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021570 | AES79212.1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 5.33e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021570 | sp|Q8GW32|PRE6_ARATH | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 1.58e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021570 | G7L2D1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 2.55e-52 | 167 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1021570 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1021570 | 0.866292 | 3.172882e-65 | -8.615850e-47 |
| Msa0112570 | Msa1021570 | 0.826511 | 2.605607e-54 | -8.615850e-47 |
| Msa0727930 | Msa1021570 | 0.822579 | 2.196423e-53 | -8.615850e-47 |
| Msa0769180 | Msa1021570 | 0.804151 | 2.478322e-49 | -8.615850e-47 |
| Msa0158600 | Msa1021570 | 0.820255 | 7.556443e-53 | -8.615850e-47 |
| Msa0392420 | Msa1021570 | 0.813163 | 2.941028e-51 | -8.615850e-47 |
| Msa0392460 | Msa1021570 | 0.818659 | 1.746293e-52 | -8.615850e-47 |
| Msa0392490 | Msa1021570 | 0.818239 | 2.174790e-52 | -8.615850e-47 |
| Msa1005870 | Msa1021570 | 0.813449 | 2.544868e-51 | -8.615850e-47 |
| Msa1021570 | Msa1047980 | 0.802785 | 4.756782e-49 | -8.615850e-47 |
| Msa1021570 | Msa1060310 | 0.961596 | 6.929250e-120 | -8.615850e-47 |
| Msa1021570 | Msa1092010 | 0.814642 | 1.388331e-51 | -8.615850e-47 |
| Msa1021570 | Msa1105560 | 0.915057 | 9.245293e-85 | -8.615850e-47 |
| Msa1021570 | Msa1135390 | 0.802278 | 6.053497e-49 | -8.615850e-47 |
| Msa1021570 | Msa1148940 | 0.937368 | 3.880756e-98 | -8.615850e-47 |
| Msa1021570 | Msa1218550 | 0.801973 | 6.994249e-49 | -8.615850e-47 |
| Msa1021570 | Msa1374550 | 0.828303 | 9.689775e-55 | -8.615850e-47 |
| Msa0344570 | Msa1021570 | 0.804879 | 1.747758e-49 | -8.615850e-47 |
| Msa0487570 | Msa1021570 | 0.815104 | 1.096616e-51 | -8.615850e-47 |
| Msa0487630 | Msa1021570 | 0.820093 | 8.227495e-53 | -8.615850e-47 |
| Msa0535040 | Msa1021570 | 0.802023 | 6.830085e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021570 | MtrunA17_Chr7g0237771 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 4.90e-56 | 167 |
| Msa1021570 | MtrunA17_Chr8g0362131 | 50.746 | 67 | 32 | 1 | 10 | 76 | 15 | 80 | 2.98e-17 | 69.7 |
| Msa1021570 | MtrunA17_Chr3g0093001 | 50.794 | 63 | 31 | 0 | 12 | 74 | 17 | 79 | 4.40e-16 | 67.0 |
| Msa1021570 | MtrunA17_Chr5g0416431 | 46.970 | 66 | 35 | 0 | 11 | 76 | 16 | 81 | 5.49e-16 | 66.6 |
| Msa1021570 | MtrunA17_Chr6g0453041 | 49.206 | 63 | 32 | 0 | 12 | 74 | 15 | 77 | 1.67e-14 | 62.8 |
| Msa1021570 | MtrunA17_Chr7g0217141 | 43.836 | 73 | 41 | 0 | 2 | 74 | 6 | 78 | 2.11e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021570 | AT1G26945.1 | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 1.60e-17 | 70.9 |
| Msa1021570 | AT3G47710.1 | 53.521 | 71 | 32 | 1 | 5 | 74 | 9 | 79 | 6.29e-17 | 69.3 |
| Msa1021570 | AT3G28857.1 | 47.436 | 78 | 37 | 2 | 1 | 74 | 1 | 78 | 1.19e-15 | 66.2 |
| Msa1021570 | AT5G39860.1 | 50.769 | 65 | 31 | 1 | 11 | 74 | 14 | 78 | 6.18e-15 | 64.3 |
| Msa1021570 | AT5G15160.1 | 53.226 | 62 | 28 | 1 | 16 | 76 | 20 | 81 | 1.10e-13 | 61.2 |
| Msa1021570 | AT1G74500.1 | 48.438 | 64 | 32 | 1 | 12 | 74 | 17 | 80 | 1.14e-13 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAACATTGGATCATATT+AGG | 0.284722 | 7_1:-46003898 | Msa1021570:CDS |
| TAGCCACATCACAATCAATA+AGG | 0.310279 | 7_1:+46003691 | None:intergenic |
| AATAGACTGTAGAATTAAAA+AGG | 0.310346 | 7_1:+46003752 | None:intergenic |
| ATACCCTTGAGTTGTTTCTT+TGG | 0.331022 | 7_1:+46005437 | None:intergenic |
| CAATGTTTCCTGCAAGATCT+TGG | 0.360132 | 7_1:+46003910 | None:intergenic |
| TTGAATCTCTTGAGTTTCTC+TGG | 0.365643 | 7_1:+46005524 | None:intergenic |
| TGAGAGGCTAACACAATTGA+TGG | 0.413964 | 7_1:-46003846 | Msa1021570:CDS |
| ATCAGCCTCCAAGATCTTGC+AGG | 0.440449 | 7_1:-46003918 | Msa1021570:CDS |
| CAATAAGGGAAGGAAACATA+AGG | 0.473262 | 7_1:+46003706 | None:intergenic |
| CAAGATCTTGCAGGAAACAT+TGG | 0.497669 | 7_1:-46003909 | Msa1021570:CDS |
| AGCCACATCACAATCAATAA+GGG | 0.500226 | 7_1:+46003692 | None:intergenic |
| TGTTTCCTGCAAGATCTTGG+AGG | 0.509912 | 7_1:+46003913 | None:intergenic |
| TTCCCTTATTGATTGTGATG+TGG | 0.517223 | 7_1:-46003694 | Msa1021570:three_prime_UTR |
| TAAGAAAAGAGAGTCATGTC+TGG | 0.537278 | 7_1:-46005547 | Msa1021570:exon |
| AATAAGGGAAGGAAACATAA+GGG | 0.545314 | 7_1:+46003707 | None:intergenic |
| ATATTTAATAATTAAGAACA+AGG | 0.545635 | 7_1:-46003631 | Msa1021570:three_prime_UTR |
| TATTAGGAGGCTTCAGAAAG+AGG | 0.545892 | 7_1:-46003882 | Msa1021570:CDS |
| TTGTTTCTTTGGTTCAGCTG+AGG | 0.545919 | 7_1:+46005448 | None:intergenic |
| TATACATACATATACATGAT+GGG | 0.581615 | 7_1:+46003664 | None:intergenic |
| AAACATTGGATCATATTAGG+AGG | 0.601405 | 7_1:-46003895 | Msa1021570:CDS |
| ATATACATACATATACATGA+TGG | 0.604457 | 7_1:+46003663 | None:intergenic |
| TAGGAGGCTTCAGAAAGAGG+TGG | 0.622036 | 7_1:-46003879 | Msa1021570:CDS |
| TGAACCAAAGAAACAACTCA+AGG | 0.632348 | 7_1:-46005441 | Msa1021570:CDS |
| ACATCACAATCAATAAGGGA+AGG | 0.638985 | 7_1:+46003696 | None:intergenic |
| AGGTGGAAGATCTCAGTGAG+AGG | 0.651028 | 7_1:-46003862 | Msa1021570:CDS |
| AGATTAATGATCTTGTGTCA+AGG | 0.656005 | 7_1:-46005486 | Msa1021570:CDS |
| GAACCAAAGAAACAACTCAA+GGG | 0.668866 | 7_1:-46005440 | Msa1021570:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATACAAAAGTAAAAT+TGG | + | chr7_1:46003912-46003931 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTTTTTTTTTGA+AGG | + | chr7_1:46004823-46004842 | None:intergenic | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_1:46005581-46005600 | Msa1021570:five_prime_UTR | 10.0% |
| !! | TATATATACAAAAGTAAAAT+TGG | + | chr7_1:46003912-46003931 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTTTTTTTTTGA+AGG | + | chr7_1:46004823-46004842 | None:intergenic | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_1:46005581-46005600 | Msa1021570:five_prime_UTR | 10.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_1:46004017-46004036 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_1:46004040-46004059 | None:intergenic | 15.0% |
| !!! | TAAGAAAATAATTTTACCTT+TGG | - | chr7_1:46004142-46004161 | Msa1021570:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_1:46004255-46004274 | None:intergenic | 15.0% |
| !! | TTAATTATAACACAATTCAA+AGG | + | chr7_1:46004332-46004351 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGAAGGAA+AGG | + | chr7_1:46004818-46004837 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_1:46005111-46005130 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_1:46005167-46005186 | None:intergenic | 15.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_1:46004017-46004036 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_1:46004040-46004059 | None:intergenic | 15.0% |
| !!! | TAAGAAAATAATTTTACCTT+TGG | - | chr7_1:46004142-46004161 | Msa1021570:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_1:46004255-46004274 | None:intergenic | 15.0% |
| !! | TTAATTATAACACAATTCAA+AGG | + | chr7_1:46004332-46004351 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTGAAGGAA+AGG | + | chr7_1:46004818-46004837 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_1:46005111-46005130 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_1:46005167-46005186 | None:intergenic | 15.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_1:46003643-46003662 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_1:46004684-46004703 | Msa1021570:intron | 20.0% |
| !!! | TTCGAAACATATCTTTTTAT+TGG | + | chr7_1:46004745-46004764 | None:intergenic | 20.0% |
| !! | CAGAAAAAGATATATAGTAT+AGG | + | chr7_1:46005065-46005084 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_1:46005197-46005216 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_1:46005198-46005217 | None:intergenic | 20.0% |
| !! | AATAGACTGTAGAATTAAAA+AGG | + | chr7_1:46005463-46005482 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_1:46005551-46005570 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_1:46005552-46005571 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_1:46003643-46003662 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_1:46004684-46004703 | Msa1021570:intron | 20.0% |
| !!! | TTCGAAACATATCTTTTTAT+TGG | + | chr7_1:46004745-46004764 | None:intergenic | 20.0% |
| !! | CAGAAAAAGATATATAGTAT+AGG | + | chr7_1:46005065-46005084 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_1:46005197-46005216 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_1:46005198-46005217 | None:intergenic | 20.0% |
| !! | AATAGACTGTAGAATTAAAA+AGG | + | chr7_1:46005463-46005482 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_1:46005551-46005570 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_1:46005552-46005571 | None:intergenic | 20.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_1:46003886-46003905 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_1:46003892-46003911 | None:intergenic | 25.0% |
| !! | TGTCATTTAATACAAACCAA+AGG | + | chr7_1:46004161-46004180 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_1:46004238-46004257 | None:intergenic | 25.0% |
| ! | ATACAAGTTTAGATTGCAAT+TGG | - | chr7_1:46004352-46004371 | Msa1021570:intron | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_1:46004424-46004443 | Msa1021570:intron | 25.0% |
| !! | GTCACACTAACAATTTTAAA+GGG | + | chr7_1:46005043-46005062 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_1:46005078-46005097 | Msa1021570:intron | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_1:46003886-46003905 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_1:46003892-46003911 | None:intergenic | 25.0% |
| !! | TGTCATTTAATACAAACCAA+AGG | + | chr7_1:46004161-46004180 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_1:46004238-46004257 | None:intergenic | 25.0% |
| ! | ATACAAGTTTAGATTGCAAT+TGG | - | chr7_1:46004352-46004371 | Msa1021570:intron | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_1:46004424-46004443 | Msa1021570:intron | 25.0% |
| !! | GTCACACTAACAATTTTAAA+GGG | + | chr7_1:46005043-46005062 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_1:46005078-46005097 | Msa1021570:intron | 25.0% |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_1:46003726-46003745 | Msa1021570:three_prime_UTR | 30.0% | |
| ! | GTATGAATTCACTAGTTTCT+TGG | + | chr7_1:46003818-46003837 | None:intergenic | 30.0% |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_1:46003929-46003948 | Msa1021570:intron | 30.0% | |
| GTAAGTAAAAGACGACAATT+TGG | - | chr7_1:46004186-46004205 | Msa1021570:intron | 30.0% | |
| ! | ATAGACCCGAAAGTATATAA+AGG | - | chr7_1:46004841-46004860 | Msa1021570:intron | 30.0% |
| ! | TAGACCCGAAAGTATATAAA+GGG | - | chr7_1:46004842-46004861 | Msa1021570:intron | 30.0% |
| AGTACCCTTTATATACTTTC+GGG | + | chr7_1:46004849-46004868 | None:intergenic | 30.0% | |
| CAGTACCCTTTATATACTTT+CGG | + | chr7_1:46004850-46004869 | None:intergenic | 30.0% | |
| ! | GGTCACACTAACAATTTTAA+AGG | + | chr7_1:46005044-46005063 | None:intergenic | 30.0% |
| AGGAAACATTGGATCATATT+AGG | - | chr7_1:46005314-46005333 | Msa1021570:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_1:46005317-46005336 | Msa1021570:intron | 30.0% | |
| AATAAGGGAAGGAAACATAA+GGG | + | chr7_1:46005508-46005527 | None:intergenic | 30.0% | |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_1:46003726-46003745 | Msa1021570:three_prime_UTR | 30.0% | |
| ! | GTATGAATTCACTAGTTTCT+TGG | + | chr7_1:46003818-46003837 | None:intergenic | 30.0% |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_1:46003929-46003948 | Msa1021570:intron | 30.0% | |
| GTAAGTAAAAGACGACAATT+TGG | - | chr7_1:46004186-46004205 | Msa1021570:intron | 30.0% | |
| ! | ATAGACCCGAAAGTATATAA+AGG | - | chr7_1:46004841-46004860 | Msa1021570:intron | 30.0% |
| ! | TAGACCCGAAAGTATATAAA+GGG | - | chr7_1:46004842-46004861 | Msa1021570:intron | 30.0% |
| AGTACCCTTTATATACTTTC+GGG | + | chr7_1:46004849-46004868 | None:intergenic | 30.0% | |
| CAGTACCCTTTATATACTTT+CGG | + | chr7_1:46004850-46004869 | None:intergenic | 30.0% | |
| ! | GGTCACACTAACAATTTTAA+AGG | + | chr7_1:46005044-46005063 | None:intergenic | 30.0% |
| AGGAAACATTGGATCATATT+AGG | - | chr7_1:46005314-46005333 | Msa1021570:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_1:46005317-46005336 | Msa1021570:intron | 30.0% | |
| AATAAGGGAAGGAAACATAA+GGG | + | chr7_1:46005508-46005527 | None:intergenic | 30.0% | |
| TAAGAAAAGAGAGTCATGTC+TGG | - | chr7_1:46003665-46003684 | Msa1021570:three_prime_UTR | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_1:46003691-46003710 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_1:46003771-46003790 | Msa1021570:exon | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_1:46003772-46003791 | Msa1021570:exon | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_1:46003778-46003797 | None:intergenic | 35.0% |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_1:46004469-46004488 | None:intergenic | 35.0% | |
| AGTCGTATAAGCCAAACAAT+TGG | + | chr7_1:46004490-46004509 | None:intergenic | 35.0% | |
| TAAGGGAGAAAAAGAGCAAT+AGG | + | chr7_1:46005491-46005510 | None:intergenic | 35.0% | |
| CAATAAGGGAAGGAAACATA+AGG | + | chr7_1:46005509-46005528 | None:intergenic | 35.0% | |
| ACATCACAATCAATAAGGGA+AGG | + | chr7_1:46005519-46005538 | None:intergenic | 35.0% | |
| ! | TTCCCTTATTGATTGTGATG+TGG | - | chr7_1:46005518-46005537 | Msa1021570:CDS | 35.0% |
| AGCCACATCACAATCAATAA+GGG | + | chr7_1:46005523-46005542 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCAATA+AGG | + | chr7_1:46005524-46005543 | None:intergenic | 35.0% | |
| TAAGAAAAGAGAGTCATGTC+TGG | - | chr7_1:46003665-46003684 | Msa1021570:three_prime_UTR | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_1:46003691-46003710 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_1:46003771-46003790 | Msa1021570:exon | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_1:46003772-46003791 | Msa1021570:exon | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_1:46003778-46003797 | None:intergenic | 35.0% |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_1:46004469-46004488 | None:intergenic | 35.0% | |
| AGTCGTATAAGCCAAACAAT+TGG | + | chr7_1:46004490-46004509 | None:intergenic | 35.0% | |
| TAAGGGAGAAAAAGAGCAAT+AGG | + | chr7_1:46005491-46005510 | None:intergenic | 35.0% | |
| CAATAAGGGAAGGAAACATA+AGG | + | chr7_1:46005509-46005528 | None:intergenic | 35.0% | |
| ACATCACAATCAATAAGGGA+AGG | + | chr7_1:46005519-46005538 | None:intergenic | 35.0% | |
| ! | TTCCCTTATTGATTGTGATG+TGG | - | chr7_1:46005518-46005537 | Msa1021570:CDS | 35.0% |
| AGCCACATCACAATCAATAA+GGG | + | chr7_1:46005523-46005542 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCAATA+AGG | + | chr7_1:46005524-46005543 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_1:46003767-46003786 | None:intergenic | 40.0% |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_1:46004205-46004224 | Msa1021570:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_1:46004476-46004495 | Msa1021570:intron | 40.0% | |
| AAAGAAGACCTCTCTAGACA+CGG | - | chr7_1:46004592-46004611 | Msa1021570:intron | 40.0% | |
| TAATTCTTCCGTGTCTAGAG+AGG | + | chr7_1:46004603-46004622 | None:intergenic | 40.0% | |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_1:46005305-46005324 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_1:46005303-46005322 | Msa1021570:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_1:46005330-46005349 | Msa1021570:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_1:46005366-46005385 | Msa1021570:intron | 40.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_1:46003767-46003786 | None:intergenic | 40.0% |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_1:46004205-46004224 | Msa1021570:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_1:46004476-46004495 | Msa1021570:intron | 40.0% | |
| AAAGAAGACCTCTCTAGACA+CGG | - | chr7_1:46004592-46004611 | Msa1021570:intron | 40.0% | |
| TAATTCTTCCGTGTCTAGAG+AGG | + | chr7_1:46004603-46004622 | None:intergenic | 40.0% | |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_1:46005305-46005324 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_1:46005303-46005322 | Msa1021570:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_1:46005330-46005349 | Msa1021570:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_1:46005366-46005385 | Msa1021570:intron | 40.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_1:46004213-46004232 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_1:46004210-46004229 | Msa1021570:intron | 45.0% |
| GTGTCTAGAGAGGTCTTCTT+TGG | + | chr7_1:46004593-46004612 | None:intergenic | 45.0% | |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_1:46005302-46005321 | None:intergenic | 45.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_1:46004213-46004232 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_1:46004210-46004229 | Msa1021570:intron | 45.0% |
| GTGTCTAGAGAGGTCTTCTT+TGG | + | chr7_1:46004593-46004612 | None:intergenic | 45.0% | |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_1:46005302-46005321 | None:intergenic | 45.0% | |
| !!! | TATTTTTAAAAAAAATACTT+AGG | - | chr7_1:46003982-46004001 | Msa1021570:intron | 5.0% |
| !!! | TATTTTTAAAAAAAATACTT+AGG | - | chr7_1:46003982-46004001 | Msa1021570:intron | 5.0% |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_1:46005294-46005313 | Msa1021570:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_1:46005333-46005352 | Msa1021570:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_1:46005350-46005369 | Msa1021570:intron | 50.0% | |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_1:46005294-46005313 | Msa1021570:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_1:46005333-46005352 | Msa1021570:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_1:46005350-46005369 | Msa1021570:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 46003625 | 46005609 | 46003625 | ID=Msa1021570;Name=Msa1021570 |
| chr7_1 | mRNA | 46003625 | 46005609 | 46003625 | ID=Msa1021570-mRNA-1;Parent=Msa1021570;Name=Msa1021570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55|1|1|1|1|1|2|162|89 |
| chr7_1 | exon | 46003625 | 46003942 | 46003625 | ID=Msa1021570-mRNA-1:exon:9138;Parent=Msa1021570-mRNA-1 |
| chr7_1 | exon | 46005441 | 46005609 | 46005441 | ID=Msa1021570-mRNA-1:exon:9137;Parent=Msa1021570-mRNA-1 |
| chr7_1 | five_prime_UTR | 46005555 | 46005609 | 46005555 | ID=Msa1021570-mRNA-1:five_prime_utr;Parent=Msa1021570-mRNA-1 |
| chr7_1 | CDS | 46005441 | 46005554 | 46005441 | ID=Msa1021570-mRNA-1:cds;Parent=Msa1021570-mRNA-1 |
| chr7_1 | CDS | 46003787 | 46003942 | 46003787 | ID=Msa1021570-mRNA-1:cds;Parent=Msa1021570-mRNA-1 |
| chr7_1 | three_prime_UTR | 46003625 | 46003786 | 46003625 | ID=Msa1021570-mRNA-1:three_prime_utr;Parent=Msa1021570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
