AlfalfaGEDB | Msa1060310

M. sativa cultivar zhongmu-4 / Msa1060310

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060310	AES79212.1	96.629	89	3	0	1	89	1	89	5.33e-52	167

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060310	sp\|Q8GW32\|PRE6_ARATH	47.297	74	39	0	16	89	21	94	1.58e-16	70.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060310	G7L2D1	96.629	89	3	0	1	89	1	89	2.55e-52	167

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TFs/TRs:

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Gene ID	Type	Classification
Msa1060310	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000190	Msa1060310	0.837764	4.288199e-57	-8.615850e-47
Msa0112570	Msa1060310	0.806025	1.005190e-49	-8.615850e-47
Msa0158600	Msa1060310	0.808266	3.369554e-50	-8.615850e-47
Msa0221290	Msa1060310	0.802961	4.376121e-49	-8.615850e-47
Msa0392420	Msa1060310	0.804441	2.157528e-49	-8.615850e-47
Msa0392460	Msa1060310	0.809191	2.137985e-50	-8.615850e-47
Msa0392490	Msa1060310	0.801647	8.158736e-49	-8.615850e-47
Msa0487630	Msa1060310	0.803595	3.234916e-49	-8.615850e-47
Msa0727930	Msa1060310	0.805618	1.223784e-49	-8.615850e-47
Msa1005870	Msa1060310	0.806270	8.926010e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060310	MtrunA17_Chr7g0237771	96.629	89	3	0	1	89	1	89	4.90e-56	167
Msa1060310	MtrunA17_Chr8g0362131	50.746	67	32	1	10	76	15	80	2.98e-17	69.7
Msa1060310	MtrunA17_Chr3g0093001	50.794	63	31	0	12	74	17	79	4.40e-16	67.0
Msa1060310	MtrunA17_Chr5g0416431	46.970	66	35	0	11	76	16	81	5.49e-16	66.6
Msa1060310	MtrunA17_Chr6g0453041	49.206	63	32	0	12	74	15	77	1.67e-14	62.8
Msa1060310	MtrunA17_Chr7g0217141	43.836	73	41	0	2	74	6	78	2.11e-14	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1060310	AT1G26945.1	47.297	74	39	0	16	89	21	94	1.60e-17	70.9
Msa1060310	AT3G47710.1	53.521	71	32	1	5	74	9	79	6.29e-17	69.3
Msa1060310	AT3G28857.1	47.436	78	37	2	1	74	1	78	1.19e-15	66.2
Msa1060310	AT5G39860.1	50.769	65	31	1	11	74	14	78	6.18e-15	64.3
Msa1060310	AT5G15160.1	53.226	62	28	1	16	76	20	81	1.10e-13	61.2
Msa1060310	AT1G74500.1	48.438	64	32	1	12	74	17	80	1.14e-13	61.2

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Find 27 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGGATCATATTAGG+AGG	0.601405	7_2:-48134191	Msa1060310:CDS
AATAGACTGTAGAATTAAAA+AGG	0.310346	7_2:+48134048	None:intergenic
ACATCACAATCTATAAGGGA+AGG	0.609189	7_2:+48133992	None:intergenic
AGATTAATGATCTTGTGTCA+AGG	0.656005	7_2:-48135946	Msa1060310:CDS
AGCCACATCACAATCTATAA+GGG	0.509284	7_2:+48133988	None:intergenic
AGGAAACATTGGATCATATT+AGG	0.284722	7_2:-48134194	Msa1060310:CDS
AGGTGGAAGATCTCAGTGAG+AGG	0.651028	7_2:-48134158	Msa1060310:CDS
ATACCCTTGAGTTGTTTCTT+TGG	0.331022	7_2:+48135897	None:intergenic
ATATACATACATATACATGA+TGG	0.604457	7_2:+48133959	None:intergenic
ATATTTAATAATTAAGAACA+AGG	0.545635	7_2:-48133927	Msa1060310:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTAATGATCTTGTGTCA+AGG	-	chr7_2:48134022-48134041	Msa1060310:three_prime_UTR	30.0%
ATAGCTAGATAGACATATGA+TGG	-	chr7_2:48134242-48134261	Msa1060310:intron	30.0%
AAAGTGAAAATCACACCTTA+AGG	+	chr7_2:48134470-48134489	None:intergenic	30.0%
GTAAGTAAAAGACGACAATT+TGG	-	chr7_2:48134679-48134698	Msa1060310:intron	30.0%
AGTACCCTTTATATACTTTC+GGG	+	chr7_2:48135339-48135358	None:intergenic	30.0%
CAGTACCCTTTATATACTTT+CGG	+	chr7_2:48135340-48135359	None:intergenic	30.0%
AGGAAACATTGGATCATATT+AGG	-	chr7_2:48135774-48135793	Msa1060310:intron	30.0%
AAACATTGGATCATATTAGG+AGG	-	chr7_2:48135777-48135796	Msa1060310:intron	30.0%
TATAAGGGAAGGAAACATAA+GGG	+	chr7_2:48135968-48135987	None:intergenic	30.0%
AGATTAATGATCTTGTGTCA+AGG	-	chr7_2:48134022-48134041	Msa1060310:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	48133921	48136069	48133921	ID=Msa1060310;Name=Msa1060310
chr7_2	mRNA	48133921	48136069	48133921	ID=Msa1060310-mRNA-1;Parent=Msa1060310;Name=Msa1060310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55\|1\|1\|1\|1\|1\|2\|162\|89
chr7_2	exon	48133921	48134238	48133921	ID=Msa1060310-mRNA-1:exon:8709;Parent=Msa1060310-mRNA-1
chr7_2	exon	48135901	48136069	48135901	ID=Msa1060310-mRNA-1:exon:8708;Parent=Msa1060310-mRNA-1
chr7_2	five_prime_UTR	48136015	48136069	48136015	ID=Msa1060310-mRNA-1:five_prime_utr;Parent=Msa1060310-mRNA-1
chr7_2	CDS	48135901	48136014	48135901	ID=Msa1060310-mRNA-1:cds;Parent=Msa1060310-mRNA-1
chr7_2	CDS	48134083	48134238	48134083	ID=Msa1060310-mRNA-1:cds;Parent=Msa1060310-mRNA-1
chr7_2	three_prime_UTR	48133921	48134082	48133921	ID=Msa1060310-mRNA-1:three_prime_utr;Parent=Msa1060310-mRNA-1

Gene Sequence	>Msa1060310 ATGTCTGGCCAGAGAAACTCAAGAGATTCAAAGTTGAAAGAGAAACAGATTAATGATCTTGTGTCAAGGTTACAACTACTATTGCCTCAGCTGAACCAAAGAAACAACTCAAGGCAATCAGCCTCCAAGATCTTGCAGGAAACATTGGATCATATTAGGAGGCTTCAGAAAGAGGTGGAAGATCTCAGTGAGAGGCTAACACAATTGATGGATTCTGCAGATATCAATGATAATGACAGAAGAACTTTAGAGAACTTTTTTCAATATTAA
Protein sequence	>Msa1060310 MSGQRNSRDSKLKEKQINDLVSRLQLLLPQLNQRNNSRQSASKILQETLDHIRRLQKEVEDLSERLTQLMDSADINDNDRRTLENFFQY*