Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060310 | AES79212.1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 5.33e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060310 | sp|Q8GW32|PRE6_ARATH | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 1.58e-16 | 70.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060310 | G7L2D1 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 2.55e-52 | 167 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1060310 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1060310 | 0.837764 | 4.288199e-57 | -8.615850e-47 |
| Msa0112570 | Msa1060310 | 0.806025 | 1.005190e-49 | -8.615850e-47 |
| Msa0727930 | Msa1060310 | 0.805618 | 1.223784e-49 | -8.615850e-47 |
| Msa0158600 | Msa1060310 | 0.808266 | 3.369554e-50 | -8.615850e-47 |
| Msa0221290 | Msa1060310 | 0.802961 | 4.376121e-49 | -8.615850e-47 |
| Msa0392420 | Msa1060310 | 0.804441 | 2.157528e-49 | -8.615850e-47 |
| Msa0392460 | Msa1060310 | 0.809191 | 2.137985e-50 | -8.615850e-47 |
| Msa0392490 | Msa1060310 | 0.801647 | 8.158736e-49 | -8.615850e-47 |
| Msa1005870 | Msa1060310 | 0.806270 | 8.926010e-50 | -8.615850e-47 |
| Msa1021570 | Msa1060310 | 0.961596 | 6.929250e-120 | -8.615850e-47 |
| Msa1060310 | Msa1092010 | 0.809604 | 1.743012e-50 | -8.615850e-47 |
| Msa1060310 | Msa1105560 | 0.925134 | 2.766322e-90 | -8.615850e-47 |
| Msa1060310 | Msa1148940 | 0.942491 | 6.544269e-102 | -8.615850e-47 |
| Msa1060310 | Msa1374550 | 0.810749 | 9.871721e-51 | -8.615850e-47 |
| Msa0487630 | Msa1060310 | 0.803595 | 3.234916e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060310 | MtrunA17_Chr7g0237771 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 4.90e-56 | 167 |
| Msa1060310 | MtrunA17_Chr8g0362131 | 50.746 | 67 | 32 | 1 | 10 | 76 | 15 | 80 | 2.98e-17 | 69.7 |
| Msa1060310 | MtrunA17_Chr3g0093001 | 50.794 | 63 | 31 | 0 | 12 | 74 | 17 | 79 | 4.40e-16 | 67.0 |
| Msa1060310 | MtrunA17_Chr5g0416431 | 46.970 | 66 | 35 | 0 | 11 | 76 | 16 | 81 | 5.49e-16 | 66.6 |
| Msa1060310 | MtrunA17_Chr6g0453041 | 49.206 | 63 | 32 | 0 | 12 | 74 | 15 | 77 | 1.67e-14 | 62.8 |
| Msa1060310 | MtrunA17_Chr7g0217141 | 43.836 | 73 | 41 | 0 | 2 | 74 | 6 | 78 | 2.11e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1060310 | AT1G26945.1 | 47.297 | 74 | 39 | 0 | 16 | 89 | 21 | 94 | 1.60e-17 | 70.9 |
| Msa1060310 | AT3G47710.1 | 53.521 | 71 | 32 | 1 | 5 | 74 | 9 | 79 | 6.29e-17 | 69.3 |
| Msa1060310 | AT3G28857.1 | 47.436 | 78 | 37 | 2 | 1 | 74 | 1 | 78 | 1.19e-15 | 66.2 |
| Msa1060310 | AT5G39860.1 | 50.769 | 65 | 31 | 1 | 11 | 74 | 14 | 78 | 6.18e-15 | 64.3 |
| Msa1060310 | AT5G15160.1 | 53.226 | 62 | 28 | 1 | 16 | 76 | 20 | 81 | 1.10e-13 | 61.2 |
| Msa1060310 | AT1G74500.1 | 48.438 | 64 | 32 | 1 | 12 | 74 | 17 | 80 | 1.14e-13 | 61.2 |
Find 27 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAAACATTGGATCATATT+AGG | 0.284722 | 7_2:-48134194 | Msa1060310:CDS |
| TAGCCACATCACAATCTATA+AGG | 0.298146 | 7_2:+48133987 | None:intergenic |
| AATAGACTGTAGAATTAAAA+AGG | 0.310346 | 7_2:+48134048 | None:intergenic |
| ATACCCTTGAGTTGTTTCTT+TGG | 0.331022 | 7_2:+48135897 | None:intergenic |
| CAATGTTTCCTGCAAGATCT+TGG | 0.360132 | 7_2:+48134206 | None:intergenic |
| TTGAATCTCTTGAGTTTCTC+TGG | 0.365643 | 7_2:+48135984 | None:intergenic |
| TGAGAGGCTAACACAATTGA+TGG | 0.413964 | 7_2:-48134142 | Msa1060310:CDS |
| ATCAGCCTCCAAGATCTTGC+AGG | 0.440449 | 7_2:-48134214 | Msa1060310:CDS |
| CTATAAGGGAAGGAAACATA+AGG | 0.484046 | 7_2:+48134002 | None:intergenic |
| CAAGATCTTGCAGGAAACAT+TGG | 0.497669 | 7_2:-48134205 | Msa1060310:CDS |
| AGCCACATCACAATCTATAA+GGG | 0.509284 | 7_2:+48133988 | None:intergenic |
| TGTTTCCTGCAAGATCTTGG+AGG | 0.509912 | 7_2:+48134209 | None:intergenic |
| TAAGAAAAGAGAGTCATGTC+TGG | 0.537278 | 7_2:-48136007 | Msa1060310:exon |
| TATAAGGGAAGGAAACATAA+GGG | 0.545314 | 7_2:+48134003 | None:intergenic |
| ATATTTAATAATTAAGAACA+AGG | 0.545635 | 7_2:-48133927 | Msa1060310:three_prime_UTR |
| TATTAGGAGGCTTCAGAAAG+AGG | 0.545892 | 7_2:-48134178 | Msa1060310:CDS |
| TTGTTTCTTTGGTTCAGCTG+AGG | 0.545919 | 7_2:+48135908 | None:intergenic |
| TTCCCTTATAGATTGTGATG+TGG | 0.561042 | 7_2:-48133990 | Msa1060310:three_prime_UTR |
| TATACATACATATACATGAT+GGG | 0.581615 | 7_2:+48133960 | None:intergenic |
| AAACATTGGATCATATTAGG+AGG | 0.601405 | 7_2:-48134191 | Msa1060310:CDS |
| ATATACATACATATACATGA+TGG | 0.604457 | 7_2:+48133959 | None:intergenic |
| ACATCACAATCTATAAGGGA+AGG | 0.609189 | 7_2:+48133992 | None:intergenic |
| TAGGAGGCTTCAGAAAGAGG+TGG | 0.622036 | 7_2:-48134175 | Msa1060310:CDS |
| TGAACCAAAGAAACAACTCA+AGG | 0.632348 | 7_2:-48135901 | Msa1060310:CDS |
| AGGTGGAAGATCTCAGTGAG+AGG | 0.651028 | 7_2:-48134158 | Msa1060310:CDS |
| AGATTAATGATCTTGTGTCA+AGG | 0.656005 | 7_2:-48135946 | Msa1060310:CDS |
| GAACCAAAGAAACAACTCAA+GGG | 0.668866 | 7_2:-48135900 | Msa1060310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTAAAAAAAATACTT+AGG | - | chr7_2:48134296-48134315 | Msa1060310:intron | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_2:48136041-48136060 | Msa1060310:five_prime_UTR | 10.0% |
| !!! | AGTTTTTAAAAAAAATACTT+AGG | - | chr7_2:48134296-48134315 | Msa1060310:intron | 10.0% |
| !! | ATATTTAATAATTAAGAACA+AGG | - | chr7_2:48136041-48136060 | Msa1060310:five_prime_UTR | 10.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_2:48134331-48134350 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_2:48134354-48134373 | None:intergenic | 15.0% |
| !!! | TAAGAAAATAATTTTACCTT+TGG | - | chr7_2:48134635-48134654 | Msa1060310:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_2:48134748-48134767 | None:intergenic | 15.0% |
| !! | TTAATTATAACACAATTCAA+AGG | + | chr7_2:48134825-48134844 | None:intergenic | 15.0% |
| !!! | TCTATGTTTTTTTTTTTTGA+AGG | + | chr7_2:48135316-48135335 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_2:48135600-48135619 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_2:48135656-48135675 | None:intergenic | 15.0% |
| !! | ATGAAAAATAAACTTTAAGT+TGG | + | chr7_2:48134331-48134350 | None:intergenic | 15.0% |
| !! | AAATCATATTATAGTAACAT+AGG | + | chr7_2:48134354-48134373 | None:intergenic | 15.0% |
| !!! | TAAGAAAATAATTTTACCTT+TGG | - | chr7_2:48134635-48134654 | Msa1060310:intron | 15.0% |
| !! | TATATGAATCATACAATTTA+TGG | + | chr7_2:48134748-48134767 | None:intergenic | 15.0% |
| !! | TTAATTATAACACAATTCAA+AGG | + | chr7_2:48134825-48134844 | None:intergenic | 15.0% |
| !!! | TCTATGTTTTTTTTTTTTGA+AGG | + | chr7_2:48135316-48135335 | None:intergenic | 15.0% |
| !!! | TAAAGTGCTAAATATTATAT+AGG | + | chr7_2:48135600-48135619 | None:intergenic | 15.0% |
| !! | TCTATGTTTAGATTAAAATT+TGG | + | chr7_2:48135656-48135675 | None:intergenic | 15.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_2:48133939-48133958 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_2:48135177-48135196 | Msa1060310:intron | 20.0% |
| !!! | TTCGAAACATATCTTTTTAT+TGG | + | chr7_2:48135238-48135257 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTGAAGGAA+AGG | + | chr7_2:48135311-48135330 | None:intergenic | 20.0% |
| !! | CAGAAAAAGATATATAGTAT+AGG | + | chr7_2:48135554-48135573 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_2:48135686-48135705 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_2:48135687-48135706 | None:intergenic | 20.0% |
| !! | AATAGACTGTAGAATTAAAA+AGG | + | chr7_2:48135923-48135942 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_2:48136011-48136030 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_2:48136012-48136031 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGCTTACAATATT+TGG | + | chr7_2:48133939-48133958 | None:intergenic | 20.0% |
| !!! | CATTTTAATAAATCTATGTG+TGG | - | chr7_2:48135177-48135196 | Msa1060310:intron | 20.0% |
| !!! | TTCGAAACATATCTTTTTAT+TGG | + | chr7_2:48135238-48135257 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTTGAAGGAA+AGG | + | chr7_2:48135311-48135330 | None:intergenic | 20.0% |
| !! | CAGAAAAAGATATATAGTAT+AGG | + | chr7_2:48135554-48135573 | None:intergenic | 20.0% |
| !!! | GTATATAACTCTAGAAAAAA+GGG | + | chr7_2:48135686-48135705 | None:intergenic | 20.0% |
| !!! | AGTATATAACTCTAGAAAAA+AGG | + | chr7_2:48135687-48135706 | None:intergenic | 20.0% |
| !! | AATAGACTGTAGAATTAAAA+AGG | + | chr7_2:48135923-48135942 | None:intergenic | 20.0% |
| !! | TATACATACATATACATGAT+GGG | + | chr7_2:48136011-48136030 | None:intergenic | 20.0% |
| !! | ATATACATACATATACATGA+TGG | + | chr7_2:48136012-48136031 | None:intergenic | 20.0% |
| !! | ATATGAATTCACTAGTTTCT+TGG | + | chr7_2:48134114-48134133 | None:intergenic | 25.0% |
| ! | TAATGGAGTAAAATTGGTAA+TGG | + | chr7_2:48134182-48134201 | None:intergenic | 25.0% |
| !!! | AATTGGTAATGGAGTAAAAT+TGG | + | chr7_2:48134188-48134207 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_2:48134199-48134218 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_2:48134205-48134224 | None:intergenic | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | - | chr7_2:48134567-48134586 | Msa1060310:intron | 25.0% |
| !! | TGTCATTTAATACAAACCAA+AGG | + | chr7_2:48134654-48134673 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_2:48134731-48134750 | None:intergenic | 25.0% |
| ! | ATACAAGTTTAGATTGCAAT+TGG | - | chr7_2:48134845-48134864 | Msa1060310:intron | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_2:48134917-48134936 | Msa1060310:intron | 25.0% |
| !! | GTCACACTAACAATTTTAAA+GGG | + | chr7_2:48135532-48135551 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_2:48135567-48135586 | Msa1060310:intron | 25.0% |
| !! | ATATGAATTCACTAGTTTCT+TGG | + | chr7_2:48134114-48134133 | None:intergenic | 25.0% |
| ! | TAATGGAGTAAAATTGGTAA+TGG | + | chr7_2:48134182-48134201 | None:intergenic | 25.0% |
| !!! | AATTGGTAATGGAGTAAAAT+TGG | + | chr7_2:48134188-48134207 | None:intergenic | 25.0% |
| ! | TCTCAAAGTAAAATTGGTAA+TGG | + | chr7_2:48134199-48134218 | None:intergenic | 25.0% |
| !! | TGGTTTTCTCAAAGTAAAAT+TGG | + | chr7_2:48134205-48134224 | None:intergenic | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | - | chr7_2:48134567-48134586 | Msa1060310:intron | 25.0% |
| !! | TGTCATTTAATACAAACCAA+AGG | + | chr7_2:48134654-48134673 | None:intergenic | 25.0% |
| !!! | TTATGGTTTTGTAACATTCA+TGG | + | chr7_2:48134731-48134750 | None:intergenic | 25.0% |
| ! | ATACAAGTTTAGATTGCAAT+TGG | - | chr7_2:48134845-48134864 | Msa1060310:intron | 25.0% |
| !!! | TTGTTTCTACAAACTGATTT+TGG | - | chr7_2:48134917-48134936 | Msa1060310:intron | 25.0% |
| !! | GTCACACTAACAATTTTAAA+GGG | + | chr7_2:48135532-48135551 | None:intergenic | 25.0% |
| !! | TTTTCTGTCAAAGATATAGT+AGG | - | chr7_2:48135567-48135586 | Msa1060310:intron | 25.0% |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_2:48134022-48134041 | Msa1060310:three_prime_UTR | 30.0% | |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_2:48134242-48134261 | Msa1060310:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | - | chr7_2:48134452-48134471 | Msa1060310:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr7_2:48134470-48134489 | None:intergenic | 30.0% | |
| !! | AAAGACACCAACTTACTTTT+AGG | + | chr7_2:48134522-48134541 | None:intergenic | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr7_2:48134580-48134599 | None:intergenic | 30.0% |
| GTAAGTAAAAGACGACAATT+TGG | - | chr7_2:48134679-48134698 | Msa1060310:intron | 30.0% | |
| ! | ATAGACCCGAAAGTATATAA+AGG | - | chr7_2:48135331-48135350 | Msa1060310:intron | 30.0% |
| ! | TAGACCCGAAAGTATATAAA+GGG | - | chr7_2:48135332-48135351 | Msa1060310:intron | 30.0% |
| AGTACCCTTTATATACTTTC+GGG | + | chr7_2:48135339-48135358 | None:intergenic | 30.0% | |
| CAGTACCCTTTATATACTTT+CGG | + | chr7_2:48135340-48135359 | None:intergenic | 30.0% | |
| ! | GGTCACACTAACAATTTTAA+AGG | + | chr7_2:48135533-48135552 | None:intergenic | 30.0% |
| AGGAAACATTGGATCATATT+AGG | - | chr7_2:48135774-48135793 | Msa1060310:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_2:48135777-48135796 | Msa1060310:intron | 30.0% | |
| TATAAGGGAAGGAAACATAA+GGG | + | chr7_2:48135968-48135987 | None:intergenic | 30.0% | |
| AGATTAATGATCTTGTGTCA+AGG | - | chr7_2:48134022-48134041 | Msa1060310:three_prime_UTR | 30.0% | |
| ATAGCTAGATAGACATATGA+TGG | - | chr7_2:48134242-48134261 | Msa1060310:intron | 30.0% | |
| ! | TTTTATCAAGTCACACCTTA+AGG | - | chr7_2:48134452-48134471 | Msa1060310:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr7_2:48134470-48134489 | None:intergenic | 30.0% | |
| !! | AAAGACACCAACTTACTTTT+AGG | + | chr7_2:48134522-48134541 | None:intergenic | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr7_2:48134580-48134599 | None:intergenic | 30.0% |
| GTAAGTAAAAGACGACAATT+TGG | - | chr7_2:48134679-48134698 | Msa1060310:intron | 30.0% | |
| ! | ATAGACCCGAAAGTATATAA+AGG | - | chr7_2:48135331-48135350 | Msa1060310:intron | 30.0% |
| ! | TAGACCCGAAAGTATATAAA+GGG | - | chr7_2:48135332-48135351 | Msa1060310:intron | 30.0% |
| AGTACCCTTTATATACTTTC+GGG | + | chr7_2:48135339-48135358 | None:intergenic | 30.0% | |
| CAGTACCCTTTATATACTTT+CGG | + | chr7_2:48135340-48135359 | None:intergenic | 30.0% | |
| ! | GGTCACACTAACAATTTTAA+AGG | + | chr7_2:48135533-48135552 | None:intergenic | 30.0% |
| AGGAAACATTGGATCATATT+AGG | - | chr7_2:48135774-48135793 | Msa1060310:intron | 30.0% | |
| AAACATTGGATCATATTAGG+AGG | - | chr7_2:48135777-48135796 | Msa1060310:intron | 30.0% | |
| TATAAGGGAAGGAAACATAA+GGG | + | chr7_2:48135968-48135987 | None:intergenic | 30.0% | |
| TAAGAAAAGAGAGTCATGTC+TGG | - | chr7_2:48133961-48133980 | Msa1060310:three_prime_UTR | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_2:48133987-48134006 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_2:48134067-48134086 | Msa1060310:exon | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_2:48134068-48134087 | Msa1060310:exon | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_2:48134074-48134093 | None:intergenic | 35.0% |
| TGATAAAAGACACCACCAAA+GGG | + | chr7_2:48134440-48134459 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | + | chr7_2:48134441-48134460 | None:intergenic | 35.0% | |
| ACACCTTCCTAAAAGTAAGT+TGG | - | chr7_2:48134512-48134531 | Msa1060310:intron | 35.0% | |
| !! | ACACCAACTTACTTTTAGGA+AGG | + | chr7_2:48134518-48134537 | None:intergenic | 35.0% |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_2:48134962-48134981 | None:intergenic | 35.0% | |
| AGTCGTATAAGCCAAACAAT+TGG | + | chr7_2:48134983-48135002 | None:intergenic | 35.0% | |
| TAAGGGAGAAAAAGAGCAAT+AGG | + | chr7_2:48135951-48135970 | None:intergenic | 35.0% | |
| CTATAAGGGAAGGAAACATA+AGG | + | chr7_2:48135969-48135988 | None:intergenic | 35.0% | |
| ACATCACAATCTATAAGGGA+AGG | + | chr7_2:48135979-48135998 | None:intergenic | 35.0% | |
| TTCCCTTATAGATTGTGATG+TGG | - | chr7_2:48135978-48135997 | Msa1060310:CDS | 35.0% | |
| AGCCACATCACAATCTATAA+GGG | + | chr7_2:48135983-48136002 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCTATA+AGG | + | chr7_2:48135984-48136003 | None:intergenic | 35.0% | |
| TAAGAAAAGAGAGTCATGTC+TGG | - | chr7_2:48133961-48133980 | Msa1060310:three_prime_UTR | 35.0% | |
| TTGAATCTCTTGAGTTTCTC+TGG | + | chr7_2:48133987-48134006 | None:intergenic | 35.0% | |
| TGAACCAAAGAAACAACTCA+AGG | - | chr7_2:48134067-48134086 | Msa1060310:exon | 35.0% | |
| GAACCAAAGAAACAACTCAA+GGG | - | chr7_2:48134068-48134087 | Msa1060310:exon | 35.0% | |
| !! | ATACCCTTGAGTTGTTTCTT+TGG | + | chr7_2:48134074-48134093 | None:intergenic | 35.0% |
| TGATAAAAGACACCACCAAA+GGG | + | chr7_2:48134440-48134459 | None:intergenic | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | + | chr7_2:48134441-48134460 | None:intergenic | 35.0% | |
| ACACCTTCCTAAAAGTAAGT+TGG | - | chr7_2:48134512-48134531 | Msa1060310:intron | 35.0% | |
| !! | ACACCAACTTACTTTTAGGA+AGG | + | chr7_2:48134518-48134537 | None:intergenic | 35.0% |
| GGCAGCATTGTGAAAAAAAT+TGG | + | chr7_2:48134962-48134981 | None:intergenic | 35.0% | |
| AGTCGTATAAGCCAAACAAT+TGG | + | chr7_2:48134983-48135002 | None:intergenic | 35.0% | |
| TAAGGGAGAAAAAGAGCAAT+AGG | + | chr7_2:48135951-48135970 | None:intergenic | 35.0% | |
| CTATAAGGGAAGGAAACATA+AGG | + | chr7_2:48135969-48135988 | None:intergenic | 35.0% | |
| ACATCACAATCTATAAGGGA+AGG | + | chr7_2:48135979-48135998 | None:intergenic | 35.0% | |
| TTCCCTTATAGATTGTGATG+TGG | - | chr7_2:48135978-48135997 | Msa1060310:CDS | 35.0% | |
| AGCCACATCACAATCTATAA+GGG | + | chr7_2:48135983-48136002 | None:intergenic | 35.0% | |
| TAGCCACATCACAATCTATA+AGG | + | chr7_2:48135984-48136003 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_2:48134063-48134082 | None:intergenic | 40.0% |
| TTATGTTACAAGCCACCCTT+TGG | - | chr7_2:48134422-48134441 | Msa1060310:intron | 40.0% | |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_2:48134698-48134717 | Msa1060310:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_2:48134969-48134988 | Msa1060310:intron | 40.0% | |
| AAAGAAGACCTCTCTAGACA+CGG | - | chr7_2:48135085-48135104 | Msa1060310:intron | 40.0% | |
| TAATTCTTCCGTGTCTAGAG+AGG | + | chr7_2:48135096-48135115 | None:intergenic | 40.0% | |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_2:48135765-48135784 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_2:48135763-48135782 | Msa1060310:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_2:48135790-48135809 | Msa1060310:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_2:48135826-48135845 | Msa1060310:intron | 40.0% | |
| ! | TTGTTTCTTTGGTTCAGCTG+AGG | + | chr7_2:48134063-48134082 | None:intergenic | 40.0% |
| TTATGTTACAAGCCACCCTT+TGG | - | chr7_2:48134422-48134441 | Msa1060310:intron | 40.0% | |
| ! | TTGGACCTGCACTAAAGTTT+TGG | - | chr7_2:48134698-48134717 | Msa1060310:intron | 40.0% |
| TCACAATGCTGCCAATTGTT+TGG | - | chr7_2:48134969-48134988 | Msa1060310:intron | 40.0% | |
| AAAGAAGACCTCTCTAGACA+CGG | - | chr7_2:48135085-48135104 | Msa1060310:intron | 40.0% | |
| TAATTCTTCCGTGTCTAGAG+AGG | + | chr7_2:48135096-48135115 | None:intergenic | 40.0% | |
| CAATGTTTCCTGCAAGATCT+TGG | + | chr7_2:48135765-48135784 | None:intergenic | 40.0% | |
| CAAGATCTTGCAGGAAACAT+TGG | - | chr7_2:48135763-48135782 | Msa1060310:intron | 40.0% | |
| TATTAGGAGGCTTCAGAAAG+AGG | - | chr7_2:48135790-48135809 | Msa1060310:intron | 40.0% | |
| TGAGAGGCTAACACAATTGA+TGG | - | chr7_2:48135826-48135845 | Msa1060310:intron | 40.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr7_2:48134437-48134456 | None:intergenic | 45.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_2:48134706-48134725 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_2:48134703-48134722 | Msa1060310:intron | 45.0% |
| GTGTCTAGAGAGGTCTTCTT+TGG | + | chr7_2:48135086-48135105 | None:intergenic | 45.0% | |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_2:48135762-48135781 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr7_2:48134437-48134456 | None:intergenic | 45.0% | |
| CCAAGCCAAAACTTTAGTGC+AGG | + | chr7_2:48134706-48134725 | None:intergenic | 45.0% | |
| !!! | CCTGCACTAAAGTTTTGGCT+TGG | - | chr7_2:48134703-48134722 | Msa1060310:intron | 45.0% |
| GTGTCTAGAGAGGTCTTCTT+TGG | + | chr7_2:48135086-48135105 | None:intergenic | 45.0% | |
| TGTTTCCTGCAAGATCTTGG+AGG | + | chr7_2:48135762-48135781 | None:intergenic | 45.0% | |
| !! | TATATATACAAAATTAAAAT+TGG | + | chr7_2:48134225-48134244 | None:intergenic | 5.0% |
| !! | TTATAAAGATATATATATAT+AGG | - | chr7_2:48134398-48134417 | Msa1060310:intron | 5.0% |
| !! | TATAAAGATATATATATATA+GGG | - | chr7_2:48134399-48134418 | Msa1060310:intron | 5.0% |
| !! | TATATATACAAAATTAAAAT+TGG | + | chr7_2:48134225-48134244 | None:intergenic | 5.0% |
| !! | TTATAAAGATATATATATAT+AGG | - | chr7_2:48134398-48134417 | Msa1060310:intron | 5.0% |
| !! | TATAAAGATATATATATATA+GGG | - | chr7_2:48134399-48134418 | Msa1060310:intron | 5.0% |
| TGTTACAAGCCACCCTTTGG+TGG | - | chr7_2:48134425-48134444 | Msa1060310:intron | 50.0% | |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_2:48135754-48135773 | Msa1060310:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_2:48135793-48135812 | Msa1060310:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_2:48135810-48135829 | Msa1060310:intron | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | - | chr7_2:48134425-48134444 | Msa1060310:intron | 50.0% | |
| ATCAGCCTCCAAGATCTTGC+AGG | - | chr7_2:48135754-48135773 | Msa1060310:intron | 50.0% | |
| TAGGAGGCTTCAGAAAGAGG+TGG | - | chr7_2:48135793-48135812 | Msa1060310:intron | 50.0% | |
| AGGTGGAAGATCTCAGTGAG+AGG | - | chr7_2:48135810-48135829 | Msa1060310:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 48133921 | 48136069 | 48133921 | ID=Msa1060310;Name=Msa1060310 |
| chr7_2 | mRNA | 48133921 | 48136069 | 48133921 | ID=Msa1060310-mRNA-1;Parent=Msa1060310;Name=Msa1060310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=55|1|1|1|1|1|2|162|89 |
| chr7_2 | exon | 48133921 | 48134238 | 48133921 | ID=Msa1060310-mRNA-1:exon:8709;Parent=Msa1060310-mRNA-1 |
| chr7_2 | exon | 48135901 | 48136069 | 48135901 | ID=Msa1060310-mRNA-1:exon:8708;Parent=Msa1060310-mRNA-1 |
| chr7_2 | five_prime_UTR | 48136015 | 48136069 | 48136015 | ID=Msa1060310-mRNA-1:five_prime_utr;Parent=Msa1060310-mRNA-1 |
| chr7_2 | CDS | 48135901 | 48136014 | 48135901 | ID=Msa1060310-mRNA-1:cds;Parent=Msa1060310-mRNA-1 |
| chr7_2 | CDS | 48134083 | 48134238 | 48134083 | ID=Msa1060310-mRNA-1:cds;Parent=Msa1060310-mRNA-1 |
| chr7_2 | three_prime_UTR | 48133921 | 48134082 | 48133921 | ID=Msa1060310-mRNA-1:three_prime_utr;Parent=Msa1060310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
