Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149140 | XP_003588697.1 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 835 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149140 | sp|Q9LFM5|YUC4_ARATH | 71.788 | 397 | 106 | 2 | 11 | 403 | 12 | 406 | 0.0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149140 | G7I6C3 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 835 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0149140 | 0.951154 | 3.710698e-109 | -8.615850e-47 |
| Msa0015710 | Msa0149140 | 0.841809 | 3.792822e-58 | -8.615850e-47 |
| Msa0016120 | Msa0149140 | 0.829189 | 5.915337e-55 | -8.615850e-47 |
| Msa0019600 | Msa0149140 | 0.840159 | 1.028652e-57 | -8.615850e-47 |
| Msa0050040 | Msa0149140 | 0.823804 | 1.137300e-53 | -8.615850e-47 |
| Msa0055450 | Msa0149140 | 0.822231 | 2.646379e-53 | -8.615850e-47 |
| Msa0062440 | Msa0149140 | 0.806224 | 9.127197e-50 | -8.615850e-47 |
| Msa0074650 | Msa0149140 | 0.821915 | 3.131527e-53 | -8.615850e-47 |
| Msa0080990 | Msa0149140 | 0.813925 | 1.999664e-51 | -8.615850e-47 |
| Msa0102990 | Msa0149140 | 0.822774 | 1.978966e-53 | -8.615850e-47 |
| Msa0109880 | Msa0149140 | 0.842983 | 1.852879e-58 | -8.615850e-47 |
| Msa0111750 | Msa0149140 | 0.845783 | 3.273302e-59 | -8.615850e-47 |
| Msa0124130 | Msa0149140 | 0.934968 | 1.770812e-96 | -8.615850e-47 |
| Msa0141120 | Msa0149140 | 0.844129 | 9.149547e-59 | -8.615850e-47 |
| Msa0149140 | Msa0152480 | 0.836577 | 8.623735e-57 | -8.615850e-47 |
| Msa0149140 | Msa0152500 | 0.843185 | 1.637167e-58 | -8.615850e-47 |
| Msa0149140 | Msa0156250 | 0.845144 | 4.878865e-59 | -8.615850e-47 |
| Msa0149140 | Msa0185490 | 0.825769 | 3.913233e-54 | -8.615850e-47 |
| Msa0149140 | Msa0197100 | 0.811812 | 5.804721e-51 | -8.615850e-47 |
| Msa0149140 | Msa0203030 | 0.812268 | 4.619005e-51 | -8.615850e-47 |
| Msa0149140 | Msa0212150 | 0.842010 | 3.356939e-58 | -8.615850e-47 |
| Msa0149140 | Msa0215640 | 0.847700 | 9.799286e-60 | -8.615850e-47 |
| Msa0149140 | Msa0219190 | 0.812238 | 4.688041e-51 | -8.615850e-47 |
| Msa0149140 | Msa0221290 | 0.817592 | 3.044366e-52 | -8.615850e-47 |
| Msa0149140 | Msa0239030 | 0.823352 | 1.450742e-53 | -8.615850e-47 |
| Msa0149140 | Msa0252630 | 0.837533 | 4.915334e-57 | -8.615850e-47 |
| Msa0149140 | Msa0252770 | 0.841815 | 3.779209e-58 | -8.615850e-47 |
| Msa0149140 | Msa0276740 | 0.800845 | 1.190680e-48 | -8.615850e-47 |
| Msa0149140 | Msa0289920 | 0.844092 | 9.363547e-59 | -8.615850e-47 |
| Msa0149140 | Msa0291330 | 0.812724 | 3.670818e-51 | -8.615850e-47 |
| Msa0149140 | Msa0298240 | 0.800528 | 1.381776e-48 | -8.615850e-47 |
| Msa0149140 | Msa0306120 | 0.872210 | 3.788395e-67 | -8.615850e-47 |
| Msa0149140 | Msa0316680 | 0.809666 | 1.690236e-50 | -8.615850e-47 |
| Msa0149140 | Msa0322830 | 0.833521 | 5.083356e-56 | -8.615850e-47 |
| Msa0149140 | Msa0322840 | 0.832824 | 7.582933e-56 | -8.615850e-47 |
| Msa0149140 | Msa0322860 | 0.856224 | 3.718146e-62 | -8.615850e-47 |
| Msa0149140 | Msa0329620 | 0.856859 | 2.419906e-62 | -8.615850e-47 |
| Msa0149140 | Msa0333450 | 0.808461 | 3.062780e-50 | -8.615850e-47 |
| Msa0149140 | Msa0333700 | 0.828092 | 1.089646e-54 | -8.615850e-47 |
| Msa0149140 | Msa0343660 | 0.858252 | 9.358730e-63 | -8.615850e-47 |
| Msa0149140 | Msa0344570 | 0.828721 | 7.682625e-55 | -8.615850e-47 |
| Msa0149140 | Msa0351770 | 0.865377 | 6.172684e-65 | -8.615850e-47 |
| Msa0149140 | Msa0359250 | 0.906050 | 2.244656e-80 | -8.615850e-47 |
| Msa0149140 | Msa0373960 | 0.802949 | 4.400988e-49 | -8.615850e-47 |
| Msa0149140 | Msa0375700 | 0.817630 | 2.985437e-52 | -8.615850e-47 |
| Msa0149140 | Msa0384910 | 0.816059 | 6.720455e-52 | -8.615850e-47 |
| Msa0149140 | Msa0386360 | 0.804379 | 2.222392e-49 | -8.615850e-47 |
| Msa0149140 | Msa0392420 | 0.824509 | 7.765907e-54 | -8.615850e-47 |
| Msa0149140 | Msa0392460 | 0.820157 | 7.955801e-53 | -8.615850e-47 |
| Msa0149140 | Msa0392490 | 0.822150 | 2.763166e-53 | -8.615850e-47 |
| Msa0149140 | Msa0406000 | 0.903295 | 4.019128e-79 | -8.615850e-47 |
| Msa0149140 | Msa0423100 | 0.807965 | 3.906063e-50 | -8.615850e-47 |
| Msa0149140 | Msa0424330 | 0.852816 | 3.602180e-61 | -8.615850e-47 |
| Msa0149140 | Msa0424340 | 0.881931 | 1.592286e-70 | -8.615850e-47 |
| Msa0149140 | Msa0424350 | 0.877400 | 6.476436e-69 | -8.615850e-47 |
| Msa0149140 | Msa0441590 | 0.825921 | 3.601583e-54 | -8.615850e-47 |
| Msa0149140 | Msa0451400 | 0.900435 | 7.349921e-78 | -8.615850e-47 |
| Msa0149140 | Msa0469260 | 0.805239 | 1.469176e-49 | -8.615850e-47 |
| Msa0149140 | Msa0479540 | 0.814343 | 1.617267e-51 | -8.615850e-47 |
| Msa0149140 | Msa0487570 | 0.830259 | 3.247426e-55 | -8.615850e-47 |
| Msa0149140 | Msa0487630 | 0.829156 | 6.027789e-55 | -8.615850e-47 |
| Msa0149140 | Msa0492190 | 0.885813 | 5.882535e-72 | -8.615850e-47 |
| Msa0149140 | Msa0515950 | 0.859298 | 4.556729e-63 | -8.615850e-47 |
| Msa0149140 | Msa0534930 | 0.840674 | 7.543209e-58 | -8.615850e-47 |
| Msa0149140 | Msa0535040 | 0.828611 | 8.165088e-55 | -8.615850e-47 |
| Msa0149140 | Msa0537920 | 0.826000 | 3.449085e-54 | -8.615850e-47 |
| Msa0149140 | Msa0538220 | 0.814134 | 1.798183e-51 | -8.615850e-47 |
| Msa0149140 | Msa0575740 | 0.833188 | 6.154894e-56 | -8.615850e-47 |
| Msa0149140 | Msa0591790 | 0.856331 | 3.459073e-62 | -8.615850e-47 |
| Msa0149140 | Msa0591800 | 0.818434 | 1.964471e-52 | -8.615850e-47 |
| Msa0149140 | Msa0594090 | 0.857109 | 2.041837e-62 | -8.615850e-47 |
| Msa0149140 | Msa0641250 | 0.827918 | 1.199761e-54 | -8.615850e-47 |
| Msa0149140 | Msa0669840 | 0.887952 | 9.078975e-73 | -8.615850e-47 |
| Msa0149140 | Msa0707220 | 0.824706 | 6.981418e-54 | -8.615850e-47 |
| Msa0149140 | Msa0709450 | 0.855575 | 5.754551e-62 | -8.615850e-47 |
| Msa0149140 | Msa0711320 | 0.811337 | 7.362179e-51 | -8.615850e-47 |
| Msa0149140 | Msa0725860 | 0.859508 | 3.941460e-63 | -8.615850e-47 |
| Msa0149140 | Msa0739580 | 0.896929 | 2.299537e-76 | -8.615850e-47 |
| Msa0149140 | Msa0742180 | 0.815429 | 9.288071e-52 | -8.615850e-47 |
| Msa0149140 | Msa0748000 | 0.812075 | 5.087164e-51 | -8.615850e-47 |
| Msa0149140 | Msa0748400 | 0.817562 | 3.092129e-52 | -8.615850e-47 |
| Msa0149140 | Msa0751890 | 0.835311 | 1.807023e-56 | -8.615850e-47 |
| Msa0149140 | Msa0752840 | 0.848716 | 5.131968e-60 | -8.615850e-47 |
| Msa0149140 | Msa0764820 | 0.809349 | 1.976846e-50 | -8.615850e-47 |
| Msa0149140 | Msa0770290 | 0.815960 | 7.073783e-52 | -8.615850e-47 |
| Msa0149140 | Msa0782360 | 0.867020 | 1.861781e-65 | -8.615850e-47 |
| Msa0149140 | Msa0786040 | 0.800536 | 1.376674e-48 | -8.615850e-47 |
| Msa0149140 | Msa0819890 | 0.824082 | 9.787533e-54 | -8.615850e-47 |
| Msa0149140 | Msa0819900 | 0.824165 | 9.358076e-54 | -8.615850e-47 |
| Msa0149140 | Msa0823400 | 0.819080 | 1.401076e-52 | -8.615850e-47 |
| Msa0149140 | Msa0828830 | 0.856792 | 2.531231e-62 | -8.615850e-47 |
| Msa0149140 | Msa0831940 | 0.841538 | 4.471349e-58 | -8.615850e-47 |
| Msa0149140 | Msa0840500 | 0.820223 | 7.681694e-53 | -8.615850e-47 |
| Msa0149140 | Msa0845940 | 0.806440 | 8.216982e-50 | -8.615850e-47 |
| Msa0149140 | Msa0849280 | 0.822462 | 2.338972e-53 | -8.615850e-47 |
| Msa0149140 | Msa0851020 | 0.826474 | 2.659644e-54 | -8.615850e-47 |
| Msa0149140 | Msa0860160 | 0.817522 | 3.156413e-52 | -8.615850e-47 |
| Msa0149140 | Msa0860170 | 0.810492 | 1.122041e-50 | -8.615850e-47 |
| Msa0149140 | Msa0860280 | 0.873270 | 1.674736e-67 | -8.615850e-47 |
| Msa0149140 | Msa0867350 | 0.884855 | 1.342052e-71 | -8.615850e-47 |
| Msa0149140 | Msa0885060 | 0.806181 | 9.316200e-50 | -8.615850e-47 |
| Msa0149140 | Msa0896350 | 0.841075 | 5.920061e-58 | -8.615850e-47 |
| Msa0149140 | Msa0898730 | 0.900372 | 7.824313e-78 | -8.615850e-47 |
| Msa0149140 | Msa0899950 | 0.807916 | 4.000237e-50 | -8.615850e-47 |
| Msa0149140 | Msa0916640 | 0.824177 | 9.296530e-54 | -8.615850e-47 |
| Msa0149140 | Msa0922750 | 0.850180 | 2.005576e-60 | -8.615850e-47 |
| Msa0149140 | Msa0927120 | 0.809031 | 2.313456e-50 | -8.615850e-47 |
| Msa0149140 | Msa0929870 | 0.838003 | 3.723187e-57 | -8.615850e-47 |
| Msa0149140 | Msa0936410 | 0.814893 | 1.221357e-51 | -8.615850e-47 |
| Msa0149140 | Msa0941820 | 0.809100 | 2.236216e-50 | -8.615850e-47 |
| Msa0149140 | Msa0944760 | 0.825092 | 5.658325e-54 | -8.615850e-47 |
| Msa0149140 | Msa0944880 | 0.802795 | 4.735246e-49 | -8.615850e-47 |
| Msa0149140 | Msa0946210 | 0.815559 | 8.686659e-52 | -8.615850e-47 |
| Msa0149140 | Msa0953540 | 0.811466 | 6.902667e-51 | -8.615850e-47 |
| Msa0149140 | Msa0961560 | 0.855579 | 5.737505e-62 | -8.615850e-47 |
| Msa0149140 | Msa0964840 | 0.800097 | 1.690782e-48 | -8.615850e-47 |
| Msa0149140 | Msa0965310 | 0.818391 | 2.008272e-52 | -8.615850e-47 |
| Msa0149140 | Msa0973250 | 0.804478 | 2.119573e-49 | -8.615850e-47 |
| Msa0149140 | Msa0979510 | 0.811735 | 6.034199e-51 | -8.615850e-47 |
| Msa0149140 | Msa0996270 | 0.866863 | 2.088613e-65 | -8.615850e-47 |
| Msa0149140 | Msa0999300 | 0.873261 | 1.686596e-67 | -8.615850e-47 |
| Msa0149140 | Msa0999320 | 0.823183 | 1.588884e-53 | -8.615850e-47 |
| Msa0149140 | Msa0999340 | 0.808238 | 3.416648e-50 | -8.615850e-47 |
| Msa0149140 | Msa0999350 | 0.814895 | 1.220202e-51 | -8.615850e-47 |
| Msa0149140 | Msa0999360 | 0.817991 | 2.474107e-52 | -8.615850e-47 |
| Msa0149140 | Msa0999390 | 0.803015 | 4.265098e-49 | -8.615850e-47 |
| Msa0149140 | Msa0999400 | 0.805318 | 1.414219e-49 | -8.615850e-47 |
| Msa0149140 | Msa0999410 | 0.814791 | 1.287093e-51 | -8.615850e-47 |
| Msa0149140 | Msa0999700 | 0.800718 | 1.263650e-48 | -8.615850e-47 |
| Msa0149140 | Msa1001870 | 0.824521 | 7.717722e-54 | -8.615850e-47 |
| Msa0149140 | Msa1001890 | 0.851331 | 9.512228e-61 | -8.615850e-47 |
| Msa0149140 | Msa1007870 | 0.803673 | 3.115805e-49 | -8.615850e-47 |
| Msa0149140 | Msa1037770 | 0.810997 | 8.724037e-51 | -8.615850e-47 |
| Msa0149140 | Msa1037890 | 0.821205 | 4.570572e-53 | -8.615850e-47 |
| Msa0149140 | Msa1037900 | 0.841905 | 3.579327e-58 | -8.615850e-47 |
| Msa0149140 | Msa1037910 | 0.822479 | 2.317968e-53 | -8.615850e-47 |
| Msa0149140 | Msa1041530 | 0.819156 | 1.346224e-52 | -8.615850e-47 |
| Msa0149140 | Msa1042670 | 0.805425 | 1.343184e-49 | -8.615850e-47 |
| Msa0149140 | Msa1047990 | 0.803526 | 3.341971e-49 | -8.615850e-47 |
| Msa0149140 | Msa1081570 | 0.834680 | 2.605162e-56 | -8.615850e-47 |
| Msa0149140 | Msa1084520 | 0.880521 | 5.126246e-70 | -8.615850e-47 |
| Msa0149140 | Msa1092020 | 0.804967 | 1.675097e-49 | -8.615850e-47 |
| Msa0149140 | Msa1100140 | 0.811333 | 7.377415e-51 | -8.615850e-47 |
| Msa0149140 | Msa1106060 | 0.801175 | 1.019429e-48 | -8.615850e-47 |
| Msa0149140 | Msa1125810 | 0.865212 | 6.953612e-65 | -8.615850e-47 |
| Msa0149140 | Msa1127140 | 0.829904 | 3.965858e-55 | -8.615850e-47 |
| Msa0149140 | Msa1129960 | 0.828963 | 6.711691e-55 | -8.615850e-47 |
| Msa0149140 | Msa1129970 | 0.825007 | 5.927436e-54 | -8.615850e-47 |
| Msa0149140 | Msa1130010 | 0.828895 | 6.971758e-55 | -8.615850e-47 |
| Msa0149140 | Msa1135380 | 0.832597 | 8.631923e-56 | -8.615850e-47 |
| Msa0149140 | Msa1145020 | 0.829917 | 3.934909e-55 | -8.615850e-47 |
| Msa0149140 | Msa1166400 | 0.820782 | 5.719464e-53 | -8.615850e-47 |
| Msa0149140 | Msa1169990 | 0.800005 | 1.765427e-48 | -8.615850e-47 |
| Msa0149140 | Msa1171310 | 0.864095 | 1.556095e-64 | -8.615850e-47 |
| Msa0149140 | Msa1200440 | 0.801218 | 9.985709e-49 | -8.615850e-47 |
| Msa0149140 | Msa1201110 | 0.847218 | 1.328844e-59 | -8.615850e-47 |
| Msa0149140 | Msa1201160 | 0.882946 | 6.795171e-71 | -8.615850e-47 |
| Msa0149140 | Msa1228190 | 0.868552 | 5.997346e-66 | -8.615850e-47 |
| Msa0149140 | Msa1271260 | 0.854203 | 1.439115e-61 | -8.615850e-47 |
| Msa0149140 | Msa1294290 | 0.865978 | 3.987163e-65 | -8.615850e-47 |
| Msa0149140 | Msa1305510 | 0.871125 | 8.668213e-67 | -8.615850e-47 |
| Msa0149140 | Msa1316540 | 0.826405 | 2.761757e-54 | -8.615850e-47 |
| Msa0149140 | Msa1326630 | 0.819881 | 9.203209e-53 | -8.615850e-47 |
| Msa0149140 | Msa1336620 | 0.809461 | 1.870929e-50 | -8.615850e-47 |
| Msa0149140 | Msa1356990 | 0.804680 | 1.923306e-49 | -8.615850e-47 |
| Msa0149140 | Msa1369040 | 0.824805 | 6.613790e-54 | -8.615850e-47 |
| Msa0149140 | Msa1374550 | 0.812128 | 4.953852e-51 | -8.615850e-47 |
| Msa0149140 | Msa1378870 | 0.837672 | 4.528139e-57 | -8.615850e-47 |
| Msa0149140 | Msa1379970 | 0.825693 | 4.078044e-54 | -8.615850e-47 |
| Msa0149140 | Msa1389050 | 0.804261 | 2.351958e-49 | -8.615850e-47 |
| Msa0149140 | Msa1394890 | 0.814003 | 1.922396e-51 | -8.615850e-47 |
| Msa0149140 | Msa1406780 | 0.881924 | 1.600917e-70 | -8.615850e-47 |
| Msa0149140 | Msa1420060 | 0.831718 | 1.424297e-55 | -8.615850e-47 |
| Msa0149140 | Msa1421550 | 0.867641 | 1.177878e-65 | -8.615850e-47 |
| Msa0149140 | Msa1423460 | 0.828298 | 9.716292e-55 | -8.615850e-47 |
| Msa0149140 | Msa1431850 | 0.887193 | 1.769365e-72 | -8.615850e-47 |
| Msa0149140 | Msa1435480 | 0.816905 | 4.346413e-52 | -8.615850e-47 |
| Msa0149140 | Msa1456730 | 0.842007 | 3.362923e-58 | -8.615850e-47 |
| Msa0149140 | Msa1461060 | 0.837318 | 5.579364e-57 | -8.615850e-47 |
| Msa0149140 | Msa1462530 | 0.820900 | 5.370814e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149140 | MtrunA17_Chr1g0148801 | 98.030 | 406 | 8 | 0 | 1 | 406 | 1 | 406 | 0.0 | 835 |
| Msa0149140 | MtrunA17_Chr6g0485621 | 60.668 | 389 | 145 | 2 | 13 | 393 | 29 | 417 | 0.0 | 514 |
| Msa0149140 | MtrunA17_Chr7g0262591 | 58.005 | 381 | 157 | 2 | 9 | 388 | 17 | 395 | 1.37e-177 | 501 |
| Msa0149140 | MtrunA17_Chr1g0147221 | 62.078 | 385 | 142 | 2 | 9 | 389 | 35 | 419 | 2.01e-177 | 501 |
| Msa0149140 | MtrunA17_Chr1g0182991 | 57.360 | 394 | 164 | 3 | 9 | 398 | 18 | 411 | 2.33e-175 | 496 |
| Msa0149140 | MtrunA17_Chr1g0169111 | 57.216 | 388 | 160 | 1 | 7 | 388 | 93 | 480 | 3.79e-173 | 493 |
| Msa0149140 | MtrunA17_Chr3g0139441 | 59.788 | 378 | 147 | 3 | 11 | 383 | 34 | 411 | 5.14e-171 | 484 |
| Msa0149140 | MtrunA17_Chr7g0262471 | 54.575 | 306 | 136 | 2 | 84 | 388 | 213 | 516 | 6.12e-125 | 371 |
| Msa0149140 | MtrunA17_Chr7g0268621 | 44.652 | 374 | 196 | 5 | 17 | 384 | 7 | 375 | 8.88e-115 | 340 |
| Msa0149140 | MtrunA17_Chr8g0350371 | 45.213 | 376 | 195 | 4 | 17 | 386 | 7 | 377 | 9.38e-115 | 340 |
| Msa0149140 | MtrunA17_Chr7g0268611 | 42.632 | 380 | 207 | 4 | 17 | 390 | 9 | 383 | 5.28e-113 | 335 |
| Msa0149140 | MtrunA17_Chr5g0412881 | 44.032 | 377 | 200 | 5 | 17 | 387 | 7 | 378 | 2.66e-112 | 334 |
| Msa0149140 | MtrunA17_Chr3g0125701 | 42.932 | 382 | 207 | 4 | 17 | 392 | 8 | 384 | 1.20e-111 | 332 |
| Msa0149140 | MtrunA17_Chr3g0125691 | 42.932 | 382 | 207 | 4 | 17 | 392 | 8 | 384 | 1.83e-111 | 332 |
| Msa0149140 | MtrunA17_Chr3g0125711 | 41.519 | 395 | 219 | 5 | 17 | 404 | 8 | 397 | 2.75e-109 | 327 |
| Msa0149140 | MtrunA17_Chr4g0025641 | 41.509 | 212 | 119 | 2 | 5 | 211 | 4 | 215 | 2.26e-53 | 177 |
| Msa0149140 | MtrunA17_Chr4g0025651 | 42.857 | 161 | 89 | 3 | 226 | 384 | 11 | 170 | 1.20e-39 | 140 |
| Msa0149140 | MtrunA17_Chr3g0129991 | 39.496 | 119 | 68 | 2 | 74 | 188 | 1 | 119 | 2.63e-25 | 99.8 |
| Msa0149140 | MtrunA17_Chr8g0352461 | 24.545 | 220 | 135 | 7 | 18 | 208 | 6 | 223 | 5.05e-17 | 82.4 |
| Msa0149140 | MtrunA17_Chr2g0304651 | 25.098 | 255 | 142 | 12 | 18 | 230 | 7 | 254 | 1.94e-14 | 75.1 |
| Msa0149140 | MtrunA17_Chr8g0352481 | 23.301 | 206 | 132 | 4 | 18 | 197 | 6 | 211 | 6.18e-14 | 73.2 |
| Msa0149140 | MtrunA17_Chr2g0304721 | 26.772 | 254 | 137 | 11 | 18 | 229 | 7 | 253 | 7.69e-14 | 73.2 |
| Msa0149140 | MtrunA17_Chr4g0070101 | 23.864 | 352 | 195 | 15 | 40 | 325 | 38 | 382 | 2.94e-12 | 68.2 |
| Msa0149140 | MtrunA17_Chr4g0070121 | 29.193 | 161 | 83 | 7 | 40 | 169 | 38 | 198 | 4.13e-11 | 62.8 |
| Msa0149140 | MtrunA17_Chr2g0286701 | 25.792 | 221 | 122 | 9 | 18 | 200 | 16 | 232 | 6.20e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149140 | AT5G11320.1 | 71.788 | 397 | 106 | 2 | 11 | 403 | 12 | 406 | 0.0 | 599 |
| Msa0149140 | AT4G32540.1 | 63.000 | 400 | 143 | 3 | 11 | 406 | 16 | 414 | 0.0 | 551 |
| Msa0149140 | AT4G32540.2 | 62.935 | 402 | 142 | 4 | 11 | 406 | 16 | 416 | 0.0 | 546 |
| Msa0149140 | AT5G11320.2 | 72.531 | 324 | 87 | 1 | 11 | 334 | 12 | 333 | 7.55e-178 | 499 |
| Msa0149140 | AT4G13260.1 | 60.256 | 390 | 150 | 2 | 2 | 386 | 14 | 403 | 4.33e-177 | 500 |
| Msa0149140 | AT1G04610.1 | 57.364 | 387 | 158 | 1 | 9 | 388 | 30 | 416 | 1.43e-174 | 494 |
| Msa0149140 | AT1G04180.1 | 57.990 | 388 | 159 | 3 | 4 | 388 | 14 | 400 | 2.36e-173 | 491 |
| Msa0149140 | AT5G43890.1 | 55.527 | 389 | 167 | 2 | 6 | 388 | 15 | 403 | 8.38e-171 | 484 |
| Msa0149140 | AT4G28720.1 | 56.072 | 387 | 163 | 2 | 9 | 388 | 18 | 404 | 1.47e-169 | 481 |
| Msa0149140 | AT5G25620.2 | 58.312 | 391 | 157 | 4 | 10 | 395 | 27 | 416 | 8.31e-169 | 480 |
| Msa0149140 | AT5G25620.1 | 59.115 | 384 | 151 | 4 | 10 | 388 | 27 | 409 | 2.12e-168 | 478 |
| Msa0149140 | AT2G33230.1 | 57.106 | 387 | 158 | 2 | 9 | 388 | 25 | 410 | 5.78e-167 | 475 |
| Msa0149140 | AT4G13260.2 | 60.269 | 297 | 114 | 1 | 2 | 294 | 14 | 310 | 1.25e-136 | 393 |
| Msa0149140 | AT4G13260.3 | 57.931 | 290 | 117 | 2 | 102 | 386 | 11 | 300 | 7.44e-117 | 343 |
| Msa0149140 | AT1G21430.1 | 44.892 | 372 | 195 | 4 | 17 | 383 | 10 | 376 | 3.47e-116 | 344 |
| Msa0149140 | AT1G48910.1 | 42.820 | 383 | 206 | 5 | 17 | 392 | 6 | 382 | 8.29e-115 | 340 |
| Msa0149140 | AT1G19250.1 | 24.181 | 397 | 209 | 16 | 18 | 334 | 15 | 399 | 1.04e-15 | 79.3 |
| Msa0149140 | AT1G65860.1 | 24.336 | 226 | 135 | 8 | 18 | 210 | 15 | 237 | 1.52e-12 | 69.3 |
| Msa0149140 | AT5G07800.1 | 21.739 | 230 | 142 | 6 | 18 | 209 | 18 | 247 | 2.45e-12 | 68.6 |
| Msa0149140 | AT1G62560.1 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 8.29e-12 | 67.0 |
| Msa0149140 | AT1G62560.2 | 23.009 | 226 | 135 | 7 | 18 | 208 | 15 | 236 | 1.10e-11 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 1_4:-9700513 | Msa0149140:CDS |
| GTCATTGGTTGTGGGAATTC+TGG | 0.224967 | 1_4:-9700313 | Msa0149140:CDS |
| TTCTGGAATGGAAGTTAGTT+TGG | 0.279463 | 1_4:-9700296 | Msa0149140:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 1_4:-9699346 | Msa0149140:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 1_4:-9699401 | Msa0149140:CDS |
| AATTAAATCCGGTAACATTA+AGG | 0.303146 | 1_4:-9699220 | Msa0149140:intron |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 1_4:+9699282 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 1_4:-9699426 | Msa0149140:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 1_4:-9700364 | Msa0149140:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 1_4:-9699025 | Msa0149140:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 1_4:+9700373 | None:intergenic |
| GCAAAGTGTGTATGGATTCA+TGG | 0.396734 | 1_4:-9700835 | Msa0149140:CDS |
| GTAACATACCTTAATGTTAC+CGG | 0.400738 | 1_4:+9699212 | None:intergenic |
| ATAGTAGGTGCTGGTCCTTC+AGG | 0.401110 | 1_4:-9700805 | Msa0149140:CDS |
| ACACAATGCTATGCCTCATT+TGG | 0.405714 | 1_4:-9700263 | Msa0149140:CDS |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 1_4:-9700451 | Msa0149140:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 1_4:-9699345 | Msa0149140:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 1_4:+9700406 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 1_4:-9699441 | Msa0149140:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 1_4:-9699306 | Msa0149140:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 1_4:-9699000 | Msa0149140:CDS |
| GGACCAGCACCTACTATGAT+AGG | 0.457137 | 1_4:+9700811 | None:intergenic |
| GTTTGAGGAAAACTCATCAT+AGG | 0.461046 | 1_4:+9700643 | None:intergenic |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 1_4:+9699435 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 1_4:-9699327 | Msa0149140:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 1_4:-9699279 | Msa0149140:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.476052 | 1_4:-9699231 | Msa0149140:CDS |
| CTGAAGATATTACTAATCAA+TGG | 0.476187 | 1_4:-9698323 | Msa0149140:CDS |
| GTGAAAGAGATAACAAGAAA+TGG | 0.481980 | 1_4:-9699082 | Msa0149140:CDS |
| GTGATTGCATAGCTTCACTA+TGG | 0.487978 | 1_4:-9700723 | Msa0149140:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 1_4:-9700564 | Msa0149140:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 1_4:+9699317 | None:intergenic |
| CCCTTTCCTCATGGTTGGAA+AGG | 0.498580 | 1_4:-9698420 | Msa0149140:CDS |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 1_4:-9699415 | Msa0149140:CDS |
| AAACACCCTTTCCTCATGGT+TGG | 0.503476 | 1_4:-9698425 | Msa0149140:CDS |
| CCTTTCCAACCATGAGGAAA+GGG | 0.506085 | 1_4:+9698420 | None:intergenic |
| ACATCAGTTCATTTCCTACA+TGG | 0.512049 | 1_4:-9700599 | Msa0149140:CDS |
| ATTCATGGACCTATCATAGT+AGG | 0.515217 | 1_4:-9700820 | Msa0149140:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 1_4:-9699414 | Msa0149140:CDS |
| GAGTTTCGTGCAACCAAATG+AGG | 0.533241 | 1_4:+9700250 | None:intergenic |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 1_4:-9700509 | Msa0149140:CDS |
| GGACCTATCATAGTAGGTGC+TGG | 0.547397 | 1_4:-9700814 | Msa0149140:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 1_4:-9699255 | Msa0149140:CDS |
| GGATACTTAGGAAATGTTTG+AGG | 0.552505 | 1_4:+9700628 | None:intergenic |
| ACCTTTCCAACCATGAGGAA+AGG | 0.554382 | 1_4:+9698419 | None:intergenic |
| GAGCAAGGATTGTATACAGT+GGG | 0.564264 | 1_4:-9698396 | Msa0149140:CDS |
| TTCACAAGAAGAGGTCTACA+TGG | 0.580526 | 1_4:-9698372 | Msa0149140:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 1_4:+9700573 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 1_4:+9699249 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 1_4:-9698993 | Msa0149140:intron |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 1_4:+9700547 | None:intergenic |
| ACAGTGGGTTTCACAAGAAG+AGG | 0.597945 | 1_4:-9698381 | Msa0149140:CDS |
| CATGGTTGGAAAGGTGAGCA+AGG | 0.614511 | 1_4:-9698411 | Msa0149140:CDS |
| TGGTTGTGGGAATTCTGGAA+TGG | 0.619937 | 1_4:-9700308 | Msa0149140:CDS |
| GCTGCTTGTTTATCAGAACA+AGG | 0.634289 | 1_4:-9700772 | Msa0149140:CDS |
| CTTCTCTCAAGAATGAGACT+CGG | 0.636587 | 1_4:+9700745 | None:intergenic |
| TGCTCACCTTTCCAACCATG+AGG | 0.637968 | 1_4:+9698414 | None:intergenic |
| TTAATATTGTAGGTGATGGA+AGG | 0.640132 | 1_4:-9699106 | Msa0149140:intron |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 1_4:-9699317 | Msa0149140:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 1_4:+9700451 | None:intergenic |
| GCAGCTACTGCTATACCTGA+AGG | 0.661207 | 1_4:+9700790 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 1_4:-9699024 | Msa0149140:CDS |
| ATCAGCATAGGATTCCATGT+AGG | 0.688016 | 1_4:+9700585 | None:intergenic |
| TGAGCAAGGATTGTATACAG+TGG | 0.697920 | 1_4:-9698397 | Msa0149140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTAATAAATTTATT+AGG | - | chr1_4:9699935-9699954 | Msa0149140:intron | 0.0% |
| !! | TGATATTATAAAAAAAAATG+CGG | - | chr1_4:9698938-9698957 | Msa0149140:intron | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | - | chr1_4:9699970-9699989 | Msa0149140:intron | 10.0% |
| !!! | ATTTTTTTTTTTATTGATTC+AGG | - | chr1_4:9700638-9700657 | Msa0149140:CDS | 10.0% |
| !!! | TTTTTTTTTTTATTGATTCA+GGG | - | chr1_4:9700639-9700658 | Msa0149140:CDS | 10.0% |
| !! | AAAGAAATATTAAATGATGA+AGG | + | chr1_4:9699275-9699294 | None:intergenic | 15.0% |
| !! | ATTATTAAAATTACCCAAAT+GGG | + | chr1_4:9699593-9699612 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | - | chr1_4:9699650-9699669 | Msa0149140:intron | 15.0% |
| !!! | AAGAATAGTACTTTTTAAAA+GGG | + | chr1_4:9700513-9700532 | None:intergenic | 15.0% |
| !!! | AAAGAATAGTACTTTTTAAA+AGG | + | chr1_4:9700514-9700533 | None:intergenic | 15.0% |
| !!! | TAGGTAAATGAAGTTTTAAA+CGG | + | chr1_4:9698439-9698458 | None:intergenic | 20.0% |
| !! | TTCTGAGTACAAAAATAAAA+AGG | - | chr1_4:9698778-9698797 | Msa0149140:intron | 20.0% |
| !!! | GTACAAAAATAAAAAGGTTT+TGG | - | chr1_4:9698784-9698803 | Msa0149140:intron | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | + | chr1_4:9698903-9698922 | None:intergenic | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | + | chr1_4:9698904-9698923 | None:intergenic | 20.0% |
| !! | TAAATAATCAAGGGTAATAA+AGG | - | chr1_4:9699315-9699334 | Msa0149140:CDS | 20.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | - | chr1_4:9699407-9699426 | Msa0149140:CDS | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | - | chr1_4:9699547-9699566 | Msa0149140:intron | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+TGG | - | chr1_4:9699576-9699595 | Msa0149140:intron | 20.0% |
| !!! | TATGTTATTTTTTCCCATTT+GGG | - | chr1_4:9699577-9699596 | Msa0149140:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAA+TGG | + | chr1_4:9699594-9699613 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | + | chr1_4:9699747-9699766 | None:intergenic | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | - | chr1_4:9699975-9699994 | Msa0149140:intron | 20.0% |
| !! | AAAGAATAAAATCAGTTTCT+TGG | - | chr1_4:9700287-9700306 | Msa0149140:CDS | 20.0% |
| !!! | ATAAAACAGTACTAAACTTT+TGG | - | chr1_4:9700539-9700558 | Msa0149140:CDS | 20.0% |
| !!! | AATGATTTTTTCACTAAAGA+TGG | - | chr1_4:9700663-9700682 | Msa0149140:CDS | 20.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | - | chr1_4:9698606-9698625 | Msa0149140:intron | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | - | chr1_4:9698651-9698670 | Msa0149140:intron | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | - | chr1_4:9698755-9698774 | Msa0149140:intron | 25.0% |
| !!! | AATAAAAAGGTTTTGGTCAT+TGG | - | chr1_4:9698791-9698810 | Msa0149140:intron | 25.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | - | chr1_4:9698948-9698967 | Msa0149140:intron | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | - | chr1_4:9699031-9699050 | Msa0149140:CDS | 25.0% |
| ! | AAATCACGACAAAAAAATGA+TGG | + | chr1_4:9699101-9699120 | None:intergenic | 25.0% |
| ! | TCTCTGCAATAAATAATCAA+GGG | - | chr1_4:9699306-9699325 | Msa0149140:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | - | chr1_4:9699402-9699421 | Msa0149140:CDS | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | - | chr1_4:9699483-9699502 | Msa0149140:intron | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | - | chr1_4:9699718-9699737 | Msa0149140:intron | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | - | chr1_4:9699888-9699907 | Msa0149140:intron | 25.0% |
| ! | AATTAAATCCGGTAACATTA+AGG | - | chr1_4:9699899-9699918 | Msa0149140:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | - | chr1_4:9699984-9700003 | Msa0149140:intron | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | - | chr1_4:9699985-9700004 | Msa0149140:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | - | chr1_4:9700003-9700022 | Msa0149140:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | - | chr1_4:9700009-9700028 | Msa0149140:intron | 25.0% |
| !! | AAGAAATGGTGCAAAATTTT+TGG | - | chr1_4:9700051-9700070 | Msa0149140:intron | 25.0% |
| !! | TGTTTTTCTCTTCTTTTACA+TGG | - | chr1_4:9700603-9700622 | Msa0149140:CDS | 25.0% |
| !!! | AATATCTTCAGCTATTTTGA+TGG | + | chr1_4:9700787-9700806 | None:intergenic | 25.0% |
| ! | CTGAAGATATTACTAATCAA+TGG | - | chr1_4:9700796-9700815 | Msa0149140:CDS | 25.0% |
| !!! | CACTTTGCTTTTTCTTTGAA+AGG | + | chr1_4:9698272-9698291 | None:intergenic | 30.0% |
| AAGAAAAAGCAAAGTGTGTA+TGG | - | chr1_4:9698276-9698295 | Msa0149140:CDS | 30.0% | |
| !!! | ATGAAGTTTTAAACGGTCAT+AGG | + | chr1_4:9698432-9698451 | None:intergenic | 30.0% |
| GGTAGTTCACAAAAATGTTT+AGG | + | chr1_4:9698458-9698477 | None:intergenic | 30.0% | |
| ! | TGATGTTTTGTAGGATACTT+AGG | + | chr1_4:9698506-9698525 | None:intergenic | 30.0% |
| ! | GAAATGAACTGATGTTTTGT+AGG | + | chr1_4:9698515-9698534 | None:intergenic | 30.0% |
| AATATCAAAGTGATCAGCAT+AGG | + | chr1_4:9698549-9698568 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | - | chr1_4:9698555-9698574 | Msa0149140:intron | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | + | chr1_4:9698575-9698594 | None:intergenic | 30.0% | |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | - | chr1_4:9698610-9698629 | Msa0149140:intron | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | - | chr1_4:9698709-9698728 | Msa0149140:intron | 30.0% |
| ! | GATGGTTTTTGACAAAATTG+CGG | + | chr1_4:9699083-9699102 | None:intergenic | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | + | chr1_4:9699135-9699154 | None:intergenic | 30.0% |
| AAGTGACCATTAAAAAGGAA+CGG | + | chr1_4:9699172-9699191 | None:intergenic | 30.0% | |
| !! | TCCTTTTTAATGGTCACTTT+TGG | - | chr1_4:9699173-9699192 | Msa0149140:intron | 30.0% |
| !!! | CCTTTTTAATGGTCACTTTT+GGG | - | chr1_4:9699174-9699193 | Msa0149140:intron | 30.0% |
| CTCTCTGCAATAAATAATCA+AGG | - | chr1_4:9699305-9699324 | Msa0149140:CDS | 30.0% | |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | - | chr1_4:9699616-9699635 | Msa0149140:intron | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | - | chr1_4:9699626-9699645 | Msa0149140:intron | 30.0% |
| ATTCTTCCAAGAGATATGTT+TGG | - | chr1_4:9699678-9699697 | Msa0149140:intron | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | - | chr1_4:9699693-9699712 | Msa0149140:intron | 30.0% |
| TCAACATATGGAATAGCTAT+GGG | - | chr1_4:9699705-9699724 | Msa0149140:intron | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | - | chr1_4:9699774-9699793 | Msa0149140:intron | 30.0% | |
| GTAACATACCTTAATGTTAC+CGG | + | chr1_4:9699910-9699929 | None:intergenic | 30.0% | |
| !! | TTAATATTGTAGGTGATGGA+AGG | - | chr1_4:9700013-9700032 | Msa0149140:intron | 30.0% |
| GTGAAAGAGATAACAAGAAA+TGG | - | chr1_4:9700037-9700056 | Msa0149140:intron | 30.0% | |
| !! | AATGGTGCAAAATTTTTGGA+TGG | - | chr1_4:9700055-9700074 | Msa0149140:intron | 30.0% |
| !! | ATTTTTGGATGGACAAGAAA+AGG | - | chr1_4:9700066-9700085 | Msa0149140:intron | 30.0% |
| ATGCAATAATCTTAGCAACA+GGG | - | chr1_4:9700095-9700114 | Msa0149140:intron | 30.0% | |
| AAAAAAAAGAAGCTGAACAC+AGG | + | chr1_4:9700386-9700405 | None:intergenic | 30.0% | |
| ATTCATGGACCTATCATAGT+AGG | - | chr1_4:9698299-9698318 | Msa0149140:CDS | 35.0% | |
| GTTTGAGGAAAACTCATCAT+AGG | + | chr1_4:9698479-9698498 | None:intergenic | 35.0% | |
| GGATACTTAGGAAATGTTTG+AGG | + | chr1_4:9698494-9698513 | None:intergenic | 35.0% | |
| ACATCAGTTCATTTCCTACA+TGG | - | chr1_4:9698520-9698539 | Msa0149140:intron | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | + | chr1_4:9698707-9698726 | None:intergenic | 35.0% | |
| !! | CCTGTTTTTCCAACAATTCA+TGG | - | chr1_4:9698704-9698723 | Msa0149140:intron | 35.0% |
| TGTTCCATACCATGAATTGT+TGG | + | chr1_4:9698716-9698735 | None:intergenic | 35.0% | |
| ! | CATGGTATGGAACATTTTCA+TGG | - | chr1_4:9698722-9698741 | Msa0149140:intron | 35.0% |
| TAATCACTTGTATGAGCAAC+AGG | + | chr1_4:9698749-9698768 | None:intergenic | 35.0% | |
| !! | TTCTGGAATGGAAGTTAGTT+TGG | - | chr1_4:9698823-9698842 | Msa0149140:intron | 35.0% |
| ! | CACATCGATTAAAGATGCAT+CGG | + | chr1_4:9698974-9698993 | None:intergenic | 35.0% |
| TTTGACAAAATTGCGGTCAT+AGG | + | chr1_4:9699076-9699095 | None:intergenic | 35.0% | |
| CCCAAAAGTGACCATTAAAA+AGG | + | chr1_4:9699177-9699196 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | - | chr1_4:9699410-9699429 | Msa0149140:CDS | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | + | chr1_4:9699687-9699706 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | - | chr1_4:9699704-9699723 | Msa0149140:intron | 35.0% | |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | - | chr1_4:9699773-9699792 | Msa0149140:intron | 35.0% |
| ! | AGTTCTATTGGACCAGTTTT+AGG | + | chr1_4:9699828-9699847 | None:intergenic | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | + | chr1_4:9699840-9699859 | None:intergenic | 35.0% |
| ATAGAACTCAAACTTGCAAC+AGG | - | chr1_4:9699840-9699859 | Msa0149140:intron | 35.0% | |
| AAAACTCCTGTACTTGATGT+TGG | - | chr1_4:9699864-9699883 | Msa0149140:intron | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | + | chr1_4:9699873-9699892 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | - | chr1_4:9700094-9700113 | Msa0149140:intron | 35.0% | |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | + | chr1_4:9700136-9700155 | None:intergenic | 35.0% |
| CTTATGACCTATCACTATCT+AGG | - | chr1_4:9700202-9700221 | Msa0149140:intron | 35.0% | |
| GCAAAGTGTGTATGGATTCA+TGG | - | chr1_4:9698284-9698303 | Msa0149140:CDS | 40.0% | |
| GCTGCTTGTTTATCAGAACA+AGG | - | chr1_4:9698347-9698366 | Msa0149140:CDS | 40.0% | |
| CTTCTCTCAAGAATGAGACT+CGG | + | chr1_4:9698377-9698396 | None:intergenic | 40.0% | |
| GTGATTGCATAGCTTCACTA+TGG | - | chr1_4:9698396-9698415 | Msa0149140:CDS | 40.0% | |
| ATCAGCATAGGATTCCATGT+AGG | + | chr1_4:9698537-9698556 | None:intergenic | 40.0% | |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | - | chr1_4:9698797-9698816 | Msa0149140:intron | 40.0% |
| !! | AGGTTTTGGTCATTGGTTGT+GGG | - | chr1_4:9698798-9698817 | Msa0149140:intron | 40.0% |
| ACACAATGCTATGCCTCATT+TGG | - | chr1_4:9698856-9698875 | Msa0149140:intron | 40.0% | |
| ! | CTTCCTCCGTTCCTTTTTAA+TGG | - | chr1_4:9699163-9699182 | Msa0149140:intron | 40.0% |
| TGACCATTAAAAAGGAACGG+AGG | + | chr1_4:9699169-9699188 | None:intergenic | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | - | chr1_4:9699792-9699811 | Msa0149140:intron | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | + | chr1_4:9699805-9699824 | None:intergenic | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | - | chr1_4:9699802-9699821 | Msa0149140:intron | 40.0% | |
| ACCTATCACTATCTAGGCTT+GGG | - | chr1_4:9700208-9700227 | Msa0149140:intron | 40.0% | |
| TGAGCAAGGATTGTATACAG+TGG | - | chr1_4:9700722-9700741 | Msa0149140:CDS | 40.0% | |
| GAGCAAGGATTGTATACAGT+GGG | - | chr1_4:9700723-9700742 | Msa0149140:CDS | 40.0% | |
| TTCACAAGAAGAGGTCTACA+TGG | - | chr1_4:9700747-9700766 | Msa0149140:CDS | 40.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | + | chr1_4:9698671-9698690 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | - | chr1_4:9698668-9698687 | Msa0149140:intron | 45.0% | |
| ! | GTCATTGGTTGTGGGAATTC+TGG | - | chr1_4:9698806-9698825 | Msa0149140:intron | 45.0% |
| ! | TGGTTGTGGGAATTCTGGAA+TGG | - | chr1_4:9698811-9698830 | Msa0149140:intron | 45.0% |
| GAGTTTCGTGCAACCAAATG+AGG | + | chr1_4:9698872-9698891 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | - | chr1_4:9699813-9699832 | Msa0149140:intron | 45.0% | |
| ACAAGAGCAATGTGCCTACT+TGG | - | chr1_4:9700119-9700138 | Msa0149140:intron | 45.0% | |
| GACCTATCACTATCTAGGCT+TGG | - | chr1_4:9700207-9700226 | Msa0149140:intron | 45.0% | |
| TCCCAAGCCTAGATAGTGAT+AGG | + | chr1_4:9700212-9700231 | None:intergenic | 45.0% | |
| !!! | CCATGAGGAAAGGGTGTTTT+TGG | + | chr1_4:9700693-9700712 | None:intergenic | 45.0% |
| CCAAAAACACCCTTTCCTCA+TGG | - | chr1_4:9700690-9700709 | Msa0149140:CDS | 45.0% | |
| AAACACCCTTTCCTCATGGT+TGG | - | chr1_4:9700694-9700713 | Msa0149140:CDS | 45.0% | |
| CCTTTCCAACCATGAGGAAA+GGG | + | chr1_4:9700702-9700721 | None:intergenic | 45.0% | |
| ACCTTTCCAACCATGAGGAA+AGG | + | chr1_4:9700703-9700722 | None:intergenic | 45.0% | |
| ! | ACAGTGGGTTTCACAAGAAG+AGG | - | chr1_4:9700738-9700757 | Msa0149140:CDS | 45.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | - | chr1_4:9699470-9699489 | Msa0149140:intron | 5.0% |
| !! | TATTTAAATATTAAAAAAAG+TGG | + | chr1_4:9700320-9700339 | None:intergenic | 5.0% |
| GGACCTATCATAGTAGGTGC+TGG | - | chr1_4:9698305-9698324 | Msa0149140:CDS | 50.0% | |
| GGACCAGCACCTACTATGAT+AGG | + | chr1_4:9698311-9698330 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGCTGGTCCTTC+AGG | - | chr1_4:9698314-9698333 | Msa0149140:CDS | 50.0% |
| GCAGCTACTGCTATACCTGA+AGG | + | chr1_4:9698332-9698351 | None:intergenic | 50.0% | |
| CAATGTGCCTACTTGGCTCA+AGG | - | chr1_4:9700126-9700145 | Msa0149140:intron | 50.0% | |
| CCCTTTCCTCATGGTTGGAA+AGG | - | chr1_4:9700699-9700718 | Msa0149140:CDS | 50.0% | |
| TGCTCACCTTTCCAACCATG+AGG | + | chr1_4:9700708-9700727 | None:intergenic | 50.0% | |
| CATGGTTGGAAAGGTGAGCA+AGG | - | chr1_4:9700708-9700727 | Msa0149140:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 9698263 | 9700878 | 9698263 | ID=Msa0149140;Name=Msa0149140 |
| chr1_4 | mRNA | 9698263 | 9700878 | 9698263 | ID=Msa0149140-mRNA-1;Parent=Msa0149140;Name=Msa0149140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|4|0|406 |
| chr1_4 | exon | 9700249 | 9700878 | 9700249 | ID=Msa0149140-mRNA-1:exon:4097;Parent=Msa0149140-mRNA-1 |
| chr1_4 | exon | 9699221 | 9699469 | 9699221 | ID=Msa0149140-mRNA-1:exon:4096;Parent=Msa0149140-mRNA-1 |
| chr1_4 | exon | 9698994 | 9699116 | 9698994 | ID=Msa0149140-mRNA-1:exon:4095;Parent=Msa0149140-mRNA-1 |
| chr1_4 | exon | 9698263 | 9698481 | 9698263 | ID=Msa0149140-mRNA-1:exon:4094;Parent=Msa0149140-mRNA-1 |
| chr1_4 | CDS | 9700249 | 9700878 | 9700249 | ID=Msa0149140-mRNA-1:cds;Parent=Msa0149140-mRNA-1 |
| chr1_4 | CDS | 9699221 | 9699469 | 9699221 | ID=Msa0149140-mRNA-1:cds;Parent=Msa0149140-mRNA-1 |
| chr1_4 | CDS | 9698994 | 9699116 | 9698994 | ID=Msa0149140-mRNA-1:cds;Parent=Msa0149140-mRNA-1 |
| chr1_4 | CDS | 9698263 | 9698481 | 9698263 | ID=Msa0149140-mRNA-1:cds;Parent=Msa0149140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
