Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108320 | XP_003623264.1 | 90.783 | 217 | 20 | 0 | 223 | 439 | 322 | 538 | 2.28e-138 | 417 |
| Msa1108320 | XP_003623264.1 | 93.833 | 227 | 14 | 0 | 1 | 227 | 1 | 227 | 2.17e-148 | 443 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108320 | G7KRE0 | 90.783 | 217 | 20 | 0 | 223 | 439 | 322 | 538 | 1.09e-138 | 417 |
| Msa1108320 | G7KRE0 | 93.833 | 227 | 14 | 0 | 1 | 227 | 1 | 227 | 1.03e-148 | 443 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0650520 | Msa1108320 | 0.816704 | 4.821538e-52 | -8.615850e-47 |
| Msa0692540 | Msa1108320 | 0.811727 | 6.058299e-51 | -8.615850e-47 |
| Msa1024250 | Msa1108320 | 0.860368 | 2.169025e-63 | -8.615850e-47 |
| Msa1108320 | Msa1435210 | 0.809609 | 1.738623e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108320 | MtrunA17_Chr7g0242071 | 93.833 | 227 | 14 | 0 | 1 | 227 | 1 | 227 | 1.99e-152 | 443 |
| Msa1108320 | MtrunA17_Chr7g0242071 | 90.783 | 217 | 20 | 0 | 223 | 439 | 322 | 538 | 2.10e-142 | 417 |
| Msa1108320 | MtrunA17_Chr7g0241791 | 49.388 | 490 | 164 | 14 | 10 | 436 | 4 | 472 | 9.51e-130 | 383 |
| Msa1108320 | MtrunA17_Chr7g0241971 | 41.419 | 437 | 168 | 12 | 14 | 437 | 1 | 362 | 5.30e-97 | 295 |
| Msa1108320 | MtrunA17_Chr7g0242151 | 61.481 | 270 | 70 | 4 | 1 | 238 | 1 | 268 | 2.53e-96 | 299 |
| Msa1108320 | MtrunA17_Chr7g0242151 | 52.062 | 194 | 85 | 2 | 243 | 436 | 356 | 541 | 1.28e-56 | 195 |
| Msa1108320 | MtrunA17_Chr7g0242091 | 62.692 | 260 | 73 | 5 | 1 | 238 | 26 | 283 | 1.53e-93 | 293 |
| Msa1108320 | MtrunA17_Chr7g0242091 | 48.815 | 211 | 85 | 5 | 232 | 437 | 368 | 560 | 1.09e-51 | 182 |
| Msa1108320 | MtrunA17_Chr7g0242181 | 60.084 | 238 | 75 | 4 | 8 | 238 | 15 | 239 | 1.82e-82 | 263 |
| Msa1108320 | MtrunA17_Chr7g0242181 | 56.410 | 195 | 81 | 3 | 243 | 437 | 344 | 534 | 1.01e-65 | 219 |
| Msa1108320 | MtrunA17_Chr3g0107251 | 34.132 | 501 | 217 | 15 | 10 | 437 | 11 | 471 | 3.58e-75 | 243 |
| Msa1108320 | MtrunA17_Chr3g0091831 | 35.628 | 494 | 219 | 16 | 10 | 440 | 24 | 481 | 1.68e-73 | 238 |
| Msa1108320 | MtrunA17_Chr7g0242011 | 50.413 | 242 | 100 | 5 | 5 | 238 | 39 | 268 | 2.77e-69 | 229 |
| Msa1108320 | MtrunA17_Chr7g0242011 | 48.131 | 214 | 104 | 4 | 224 | 437 | 340 | 546 | 1.28e-53 | 187 |
| Msa1108320 | MtrunA17_Chr7g0241951 | 61.165 | 206 | 61 | 3 | 235 | 437 | 332 | 521 | 6.52e-68 | 225 |
| Msa1108320 | MtrunA17_Chr7g0241951 | 49.333 | 225 | 87 | 7 | 9 | 220 | 7 | 217 | 5.89e-52 | 182 |
| Msa1108320 | MtrunA17_Chr7g0242051 | 51.931 | 233 | 91 | 5 | 1 | 225 | 1 | 220 | 2.04e-67 | 223 |
| Msa1108320 | MtrunA17_Chr7g0242051 | 49.223 | 193 | 92 | 3 | 235 | 426 | 324 | 511 | 2.72e-51 | 181 |
| Msa1108320 | MtrunA17_Chr7g0242001 | 51.887 | 212 | 48 | 3 | 231 | 437 | 79 | 241 | 4.25e-60 | 196 |
| Msa1108320 | MtrunA17_Chr7g0242101 | 50.691 | 217 | 75 | 5 | 10 | 205 | 5 | 210 | 4.11e-53 | 187 |
| Msa1108320 | MtrunA17_Chr7g0242101 | 46.798 | 203 | 97 | 3 | 235 | 437 | 403 | 594 | 2.96e-47 | 171 |
| Msa1108320 | MtrunA17_Chr7g0242101 | 56.627 | 83 | 24 | 1 | 139 | 221 | 229 | 299 | 5.28e-20 | 92.8 |
| Msa1108320 | MtrunA17_Chr1g0170351 | 28.824 | 510 | 242 | 18 | 10 | 438 | 8 | 477 | 4.38e-49 | 174 |
| Msa1108320 | MtrunA17_Chr7g0242131 | 58.824 | 119 | 43 | 1 | 24 | 136 | 12 | 130 | 3.21e-43 | 148 |
| Msa1108320 | MtrunA17_Chr7g0242121 | 65.714 | 105 | 30 | 2 | 231 | 332 | 26 | 127 | 2.61e-40 | 140 |
| Msa1108320 | MtrunA17_Chr4g0006091 | 29.897 | 388 | 192 | 11 | 83 | 432 | 19 | 364 | 2.01e-31 | 123 |
| Msa1108320 | MtrunA17_Chr4g0006051 | 39.394 | 165 | 81 | 3 | 10 | 167 | 9 | 161 | 2.95e-21 | 90.1 |
| Msa1108320 | MtrunA17_Chr7g0265891 | 37.662 | 154 | 84 | 3 | 28 | 177 | 50 | 195 | 8.48e-19 | 88.6 |
| Msa1108320 | MtrunA17_Chr5g0439661 | 32.597 | 181 | 107 | 6 | 10 | 177 | 3 | 181 | 5.30e-17 | 79.3 |
| Msa1108320 | MtrunA17_Chr3g0118601 | 34.706 | 170 | 103 | 3 | 9 | 177 | 20 | 182 | 1.12e-16 | 82.0 |
| Msa1108320 | MtrunA17_Chr6g0452531 | 35.417 | 144 | 82 | 3 | 34 | 177 | 30 | 162 | 1.40e-15 | 78.2 |
| Msa1108320 | MtrunA17_Chr6g0452601 | 34.722 | 144 | 83 | 2 | 34 | 177 | 30 | 162 | 6.68e-15 | 76.3 |
| Msa1108320 | MtrunA17_Chr4g0006121 | 33.088 | 136 | 66 | 3 | 230 | 364 | 108 | 219 | 8.35e-15 | 75.1 |
| Msa1108320 | MtrunA17_Chr6g0452501 | 30.814 | 172 | 108 | 3 | 6 | 177 | 2 | 162 | 9.42e-15 | 75.9 |
| Msa1108320 | MtrunA17_Chr2g0300311 | 33.766 | 154 | 92 | 3 | 27 | 177 | 48 | 194 | 1.97e-14 | 75.1 |
| Msa1108320 | MtrunA17_Chr6g0452591 | 33.143 | 175 | 106 | 3 | 4 | 177 | 30 | 194 | 2.28e-14 | 74.7 |
| Msa1108320 | MtrunA17_Chr6g0452551 | 32.639 | 144 | 86 | 3 | 34 | 177 | 30 | 162 | 3.62e-14 | 73.9 |
| Msa1108320 | MtrunA17_Chr6g0452611 | 34.028 | 144 | 86 | 3 | 34 | 177 | 29 | 163 | 2.23e-13 | 71.6 |
| Msa1108320 | MtrunA17_Chr6g0457371 | 35.172 | 145 | 81 | 3 | 34 | 177 | 30 | 162 | 2.41e-13 | 71.6 |
| Msa1108320 | MtrunA17_Chr6g0452561 | 30.409 | 171 | 112 | 2 | 8 | 177 | 4 | 168 | 3.42e-13 | 71.2 |
| Msa1108320 | MtrunA17_Chr2g0297831 | 32.558 | 172 | 105 | 5 | 10 | 177 | 47 | 211 | 7.76e-13 | 70.1 |
| Msa1108320 | MtrunA17_Chr5g0401791 | 30.178 | 169 | 107 | 5 | 8 | 168 | 76 | 241 | 1.03e-12 | 70.1 |
| Msa1108320 | MtrunA17_Chr4g0002861 | 32.484 | 157 | 98 | 3 | 28 | 177 | 41 | 196 | 2.46e-12 | 68.9 |
| Msa1108320 | MtrunA17_Chr6g0452161 | 34.028 | 144 | 85 | 3 | 34 | 177 | 30 | 163 | 5.52e-12 | 67.4 |
| Msa1108320 | MtrunA17_Chr4g0002911 | 29.670 | 182 | 107 | 6 | 10 | 177 | 21 | 195 | 5.67e-12 | 67.8 |
| Msa1108320 | MtrunA17_Chr4g0002901 | 32.484 | 157 | 98 | 3 | 28 | 177 | 41 | 196 | 7.21e-12 | 67.4 |
| Msa1108320 | MtrunA17_Chr8g0335061 | 25.000 | 388 | 235 | 16 | 31 | 382 | 29 | 396 | 1.20e-11 | 66.2 |
| Msa1108320 | MtrunA17_Chr7g0220521 | 30.208 | 192 | 121 | 5 | 9 | 190 | 20 | 208 | 9.51e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108320 | AT3G50170.1 | 24.750 | 501 | 265 | 17 | 5 | 440 | 85 | 538 | 1.10e-22 | 100 |
| Msa1108320 | AT4G31980.1 | 38.854 | 157 | 80 | 4 | 34 | 184 | 298 | 444 | 6.18e-21 | 96.3 |
| Msa1108320 | AT3G50180.1 | 23.760 | 484 | 271 | 18 | 5 | 438 | 150 | 585 | 4.43e-20 | 93.2 |
| Msa1108320 | AT3G50190.1 | 23.983 | 467 | 280 | 15 | 6 | 440 | 69 | 492 | 1.64e-19 | 91.3 |
| Msa1108320 | AT3G50130.1 | 24.886 | 438 | 244 | 14 | 6 | 388 | 112 | 519 | 1.16e-18 | 89.0 |
| Msa1108320 | AT5G11290.2 | 37.662 | 154 | 86 | 4 | 28 | 177 | 30 | 177 | 1.70e-18 | 87.8 |
| Msa1108320 | AT3G50140.1 | 23.829 | 491 | 274 | 17 | 6 | 437 | 86 | 535 | 1.77e-18 | 88.2 |
| Msa1108320 | AT3G50160.1 | 26.211 | 351 | 208 | 9 | 31 | 359 | 106 | 427 | 1.97e-18 | 87.8 |
| Msa1108320 | AT3G50170.2 | 31.285 | 179 | 114 | 4 | 5 | 177 | 85 | 260 | 9.04e-18 | 85.5 |
| Msa1108320 | AT3G50150.1 | 30.726 | 179 | 114 | 6 | 6 | 177 | 63 | 238 | 1.75e-16 | 82.0 |
| Msa1108320 | AT3G50150.2 | 30.726 | 179 | 114 | 6 | 6 | 177 | 63 | 238 | 2.42e-16 | 81.3 |
| Msa1108320 | AT3G50140.2 | 31.148 | 183 | 107 | 6 | 6 | 177 | 86 | 260 | 3.93e-16 | 80.5 |
| Msa1108320 | AT3G47210.1 | 35.762 | 151 | 94 | 2 | 27 | 177 | 91 | 238 | 5.81e-16 | 80.1 |
| Msa1108320 | AT3G50120.1 | 28.090 | 178 | 119 | 5 | 6 | 177 | 76 | 250 | 1.86e-15 | 79.0 |
| Msa1108320 | AT2G36430.1 | 36.129 | 155 | 86 | 4 | 28 | 177 | 44 | 190 | 2.73e-15 | 78.2 |
| Msa1108320 | AT3G47250.3 | 34.211 | 152 | 84 | 6 | 34 | 177 | 66 | 209 | 1.66e-14 | 75.9 |
| Msa1108320 | AT3G47250.2 | 34.211 | 152 | 84 | 6 | 34 | 177 | 66 | 209 | 1.66e-14 | 75.9 |
| Msa1108320 | AT3G47250.1 | 34.211 | 152 | 84 | 6 | 34 | 177 | 66 | 209 | 1.66e-14 | 75.9 |
| Msa1108320 | AT5G22550.2 | 33.117 | 154 | 91 | 5 | 34 | 180 | 49 | 197 | 1.52e-13 | 72.8 |
| Msa1108320 | AT5G22560.1 | 29.412 | 170 | 102 | 3 | 27 | 180 | 45 | 212 | 1.34e-12 | 70.1 |
| Msa1108320 | AT3G50190.2 | 28.814 | 177 | 107 | 6 | 6 | 171 | 69 | 237 | 1.81e-12 | 68.9 |
| Msa1108320 | AT3G50190.4 | 28.814 | 177 | 107 | 6 | 6 | 171 | 69 | 237 | 1.87e-12 | 68.9 |
| Msa1108320 | AT3G50190.3 | 28.814 | 177 | 107 | 6 | 6 | 171 | 69 | 237 | 1.87e-12 | 68.9 |
Find 79 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCGATCGGACCAAGATTT+AGG | 0.188795 | 7_3:-51156747 | Msa1108320:CDS |
| GTTCATGTCGTTCGAGTTTA+AGG | 0.195709 | 7_3:+51156578 | None:intergenic |
| AATCTTGCCCTTACTGTCTT+AGG | 0.232751 | 7_3:-51156265 | Msa1108320:CDS |
| TTTCCTGCGGCAAATTTACT+TGG | 0.339122 | 7_3:-51153159 | Msa1108320:CDS |
| GTCGATCGGACCAAGATTTA+GGG | 0.343120 | 7_3:-51156746 | Msa1108320:CDS |
| TCTCTCCTTCCCCTAAATCT+TGG | 0.349350 | 7_3:+51156736 | None:intergenic |
| TCATCCTCGTCTTCGTATCT+AGG | 0.351728 | 7_3:+51153208 | None:intergenic |
| TACTGGAATCAACTACCTTA+TGG | 0.378688 | 7_3:+51152996 | None:intergenic |
| GGTCCGATCGACACCTTCCT+TGG | 0.402506 | 7_3:+51156757 | None:intergenic |
| ACTAGCTAAAATTATGTTAG+TGG | 0.405047 | 7_3:-51156557 | Msa1108320:CDS |
| ATGTTCCCCTCGAGGAGAAT+AGG | 0.406314 | 7_3:+51156321 | None:intergenic |
| AGAGGTGGAATTGAAAGGTT+TGG | 0.413390 | 7_3:-51153365 | Msa1108320:CDS |
| AACCTTTCAATTCCACCTCT+TGG | 0.424538 | 7_3:+51153368 | None:intergenic |
| TCTGTCTGATCTAATGTTGT+TGG | 0.429864 | 7_3:-51156425 | Msa1108320:CDS |
| AGCACTTCAGCTGCGGGACT+AGG | 0.435105 | 7_3:+51156463 | None:intergenic |
| TTCCAGTACTTATATTCAAA+TGG | 0.439603 | 7_3:-51152981 | Msa1108320:CDS |
| TGTTCCCCTCGAGGAGAATA+GGG | 0.440947 | 7_3:+51156322 | None:intergenic |
| AGCAATGCAGTGATGTCGTT+TGG | 0.446056 | 7_3:-51156639 | Msa1108320:CDS |
| TCATCTGGTTCAAACACATA+TGG | 0.448893 | 7_3:+51156352 | None:intergenic |
| GAGAGTATCCTAAGACAGTA+AGG | 0.449001 | 7_3:+51156257 | None:intergenic |
| AGAACAGACACCAGCGTCGC+AGG | 0.453520 | 7_3:+51152836 | None:intergenic |
| AACCATTTGAATATAAGTAC+TGG | 0.469467 | 7_3:+51152979 | None:intergenic |
| TTCGTATCTAGGAGCGAGAC+GGG | 0.470337 | 7_3:+51153219 | None:intergenic |
| TGACCTCTTCCATAAGCAAA+AGG | 0.472777 | 7_3:+51156710 | None:intergenic |
| AGTGGTGTAATCTAATTGCT+TGG | 0.487758 | 7_3:-51153270 | Msa1108320:CDS |
| AGAGGTTCGTGAATGCTACC+TGG | 0.492033 | 7_3:-51156605 | Msa1108320:CDS |
| GAATAGGGACGAGAGTCATC+TGG | 0.495286 | 7_3:+51156337 | None:intergenic |
| TTCGTTGTTAGATTGGCCAT+TGG | 0.501215 | 7_3:+51156901 | None:intergenic |
| ACATACGGTAACTGAAGATC+AGG | 0.501378 | 7_3:+51156235 | None:intergenic |
| CGGGACTAGGCGGAAATAAA+CGG | 0.503883 | 7_3:+51156476 | None:intergenic |
| TTGGAGCTTCTCATATCAAA+GGG | 0.506468 | 7_3:-51156520 | Msa1108320:CDS |
| GAACAGACACCAGCGTCGCA+GGG | 0.512115 | 7_3:+51152837 | None:intergenic |
| GTGGTGTAATCTAATTGCTT+GGG | 0.512632 | 7_3:-51153269 | Msa1108320:CDS |
| CTCGTCCCTATTCTCCTCGA+GGG | 0.513056 | 7_3:-51156327 | Msa1108320:CDS |
| GTTGGAGCTTCTCATATCAA+AGG | 0.513413 | 7_3:-51156521 | Msa1108320:CDS |
| CGTTTGGGAATTAGATAAAG+AGG | 0.516845 | 7_3:-51156623 | Msa1108320:CDS |
| GCAATGCAGTGATGTCGTTT+GGG | 0.518118 | 7_3:-51156638 | Msa1108320:CDS |
| AATCACATACCATCGAGAAC+AGG | 0.519855 | 7_3:-51152891 | Msa1108320:CDS |
| GCTAAAATTATGTTAGTGGA+TGG | 0.524042 | 7_3:-51156553 | Msa1108320:CDS |
| TTACAACTTCCCTGCGACGC+TGG | 0.527130 | 7_3:-51152846 | Msa1108320:CDS |
| CATGAGCAACCAAGAGCTGA+TGG | 0.527468 | 7_3:-51153050 | Msa1108320:CDS |
| GACCAAGAGGTGGAATTGAA+AGG | 0.529606 | 7_3:-51153370 | Msa1108320:CDS |
| ATTCTCCTCGAGGGGAACAT+AGG | 0.532847 | 7_3:-51156318 | Msa1108320:CDS |
| AGCAATTAGATTACACCACT+TGG | 0.535132 | 7_3:+51153273 | None:intergenic |
| AGCACTTGGAGTTGACCATA+AGG | 0.544757 | 7_3:-51153011 | Msa1108320:CDS |
| TTCCTGCGGCAAATTTACTT+GGG | 0.545239 | 7_3:-51153158 | Msa1108320:CDS |
| ACATAGGAAGACGGAGGAGA+GGG | 0.551253 | 7_3:-51156302 | Msa1108320:CDS |
| AGATGATGTCCAACTTCTCA+AGG | 0.553646 | 7_3:-51153101 | Msa1108320:CDS |
| TAACCGAGCAGATAAAAGCT+TGG | 0.557279 | 7_3:-51156662 | Msa1108320:CDS |
| CTAGGCGGAAATAAACGGCT+TGG | 0.559922 | 7_3:+51156481 | None:intergenic |
| GTTCGAGTTTAAGGTCTCCC+AGG | 0.560987 | 7_3:+51156587 | None:intergenic |
| ATGACATCAACAATTACTCT+CGG | 0.563914 | 7_3:-51152955 | Msa1108320:CDS |
| AGTTGTGATGATAAAATGCT+AGG | 0.567209 | 7_3:+51152786 | None:intergenic |
| ATCTTATAACCTGTTCTCGA+TGG | 0.568285 | 7_3:+51152882 | None:intergenic |
| AACATAGGAAGACGGAGGAG+AGG | 0.569135 | 7_3:-51156303 | Msa1108320:CDS |
| ATTGGATTTGGACCAAGAGG+TGG | 0.569614 | 7_3:-51153380 | Msa1108320:CDS |
| ACGAGGATGCTTACATTCCA+AGG | 0.576926 | 7_3:-51156774 | Msa1108320:CDS |
| TCGGACCAAGATTTAGGGGA+AGG | 0.580195 | 7_3:-51156741 | Msa1108320:CDS |
| AGCCCAAGTAAATTTGCCGC+AGG | 0.583520 | 7_3:+51153156 | None:intergenic |
| ATTCCAAGGAAGGTGTCGAT+CGG | 0.608635 | 7_3:-51156760 | Msa1108320:CDS |
| TCAATCAAGCAACATTTCAG+TGG | 0.614527 | 7_3:-51156821 | Msa1108320:CDS |
| GAGGTTCGTGAATGCTACCT+GGG | 0.616321 | 7_3:-51156604 | Msa1108320:CDS |
| TCAATTGGATTTGGACCAAG+AGG | 0.617647 | 7_3:-51153383 | Msa1108320:CDS |
| TGACATCAACAATTACTCTC+GGG | 0.617767 | 7_3:-51152954 | Msa1108320:CDS |
| GGATGCTTACATTCCAAGGA+AGG | 0.619571 | 7_3:-51156770 | Msa1108320:CDS |
| CAAGGACAAGAAAATCGTTG+TGG | 0.620900 | 7_3:-51153083 | Msa1108320:CDS |
| AGAGTATCCTAAGACAGTAA+GGG | 0.627973 | 7_3:+51156258 | None:intergenic |
| TCTCGTCCCTATTCTCCTCG+AGG | 0.632539 | 7_3:-51156328 | Msa1108320:CDS |
| TCGAGGGGAACATAGGAAGA+CGG | 0.638994 | 7_3:-51156311 | Msa1108320:CDS |
| ATCTAACAACGAAAAGTGAG+TGG | 0.647566 | 7_3:-51156891 | Msa1108320:CDS |
| CGCTCCTAGATACGAAGACG+AGG | 0.647868 | 7_3:-51153212 | Msa1108320:CDS |
| GTCTTCCTATGTTCCCCTCG+AGG | 0.649490 | 7_3:+51156313 | None:intergenic |
| ACAAGCAAAATTGTTTCCTG+CGG | 0.649625 | 7_3:-51153172 | Msa1108320:CDS |
| TCGTCCCTATTCTCCTCGAG+GGG | 0.651330 | 7_3:-51156326 | Msa1108320:CDS |
| ACTTCAGCTGCGGGACTAGG+CGG | 0.654980 | 7_3:+51156466 | None:intergenic |
| TCGATCGGACCAAGATTTAG+GGG | 0.657941 | 7_3:-51156745 | Msa1108320:CDS |
| TCGCAGGGAAGTTGTAATCG+TGG | 0.662195 | 7_3:+51152852 | None:intergenic |
| CAACTCCAAGTGCTATTGTG+CGG | 0.663092 | 7_3:+51153020 | None:intergenic |
| AGGGGAACATAGGAAGACGG+AGG | 0.697524 | 7_3:-51156308 | Msa1108320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAGAAGATTATTTT+TGG | - | chr7_3:51155581-51155600 | Msa1108320:intron | 15.0% |
| !! | ACTTATGAAGAACAAAAAAT+GGG | + | chr7_3:51153293-51153312 | None:intergenic | 20.0% |
| !! | AACTTATGAAGAACAAAAAA+TGG | + | chr7_3:51153294-51153313 | None:intergenic | 20.0% |
| !! | GAAATTTGAAGATTAGAAAT+TGG | - | chr7_3:51155491-51155510 | Msa1108320:intron | 20.0% |
| !! | GAAAAATGCAAAATACAAAA+TGG | - | chr7_3:51155729-51155748 | Msa1108320:intron | 20.0% |
| !!! | TTCCAGAAGTACTTAAAAAA+TGG | - | chr7_3:51152884-51152903 | Msa1108320:CDS | 25.0% |
| !!! | TTCCATTTTTTAAGTACTTC+TGG | + | chr7_3:51152889-51152908 | None:intergenic | 25.0% |
| ! | ACTAGCTAAAATTATGTTAG+TGG | - | chr7_3:51153125-51153144 | Msa1108320:CDS | 25.0% |
| ! | AGAAAAGTTCTTTGTATTGA+TGG | - | chr7_3:51153691-51153710 | Msa1108320:intron | 25.0% |
| !! | TTCTTTGTATTGATGGAAAT+TGG | - | chr7_3:51153698-51153717 | Msa1108320:intron | 25.0% |
| ! | ATATTACACAATGAGAAAGT+TGG | - | chr7_3:51153721-51153740 | Msa1108320:intron | 25.0% |
| !!! | TTAATTGGCTTTGTTGATAT+TGG | + | chr7_3:51154000-51154019 | None:intergenic | 25.0% |
| ! | AATATCAACAAAGCCAATTA+AGG | - | chr7_3:51153999-51154018 | Msa1108320:intron | 25.0% |
| !!! | TTGGATATCATCATTGATTT+TGG | + | chr7_3:51154095-51154114 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTAATGGTTCTTT+GGG | + | chr7_3:51154386-51154405 | None:intergenic | 25.0% |
| !!! | TTTGTTCACTTGTTTTGTAA+TGG | + | chr7_3:51154395-51154414 | None:intergenic | 25.0% |
| !!! | TTTGTTGAGTTGAATTGTTT+TGG | + | chr7_3:51154556-51154575 | None:intergenic | 25.0% |
| ! | AAACAAATCCAATGTAAAGA+TGG | - | chr7_3:51154838-51154857 | Msa1108320:intron | 25.0% |
| ! | CTAAAAGTCTTAAGTGTAAA+CGG | + | chr7_3:51155073-51155092 | None:intergenic | 25.0% |
| !!! | GATTATTTTTGGATTTTCTC+TGG | - | chr7_3:51155592-51155611 | Msa1108320:intron | 25.0% |
| ! | AAATAGTAATGAGGAAGAAA+AGG | - | chr7_3:51155845-51155864 | Msa1108320:intron | 25.0% |
| ! | AATGAAGAAAGAGAAAGAAA+AGG | - | chr7_3:51155881-51155900 | Msa1108320:intron | 25.0% |
| ! | AAGAGAAAGAAAAGGAAAAT+TGG | - | chr7_3:51155889-51155908 | Msa1108320:intron | 25.0% |
| ! | AAATTGGAAGAAGAAAGAAA+TGG | - | chr7_3:51155905-51155924 | Msa1108320:intron | 25.0% |
| ! | AGAAAAGTTCTTTGTATTGA+TGG | - | chr7_3:51153691-51153710 | Msa1108320:intron | 25.0% |
| !! | TTCTTTGTATTGATGGAAAT+TGG | - | chr7_3:51153698-51153717 | Msa1108320:intron | 25.0% |
| ! | ATATTACACAATGAGAAAGT+TGG | - | chr7_3:51153721-51153740 | Msa1108320:intron | 25.0% |
| !! | GAATTTTCATCAATTGGATT+TGG | - | chr7_3:51156290-51156309 | Msa1108320:CDS | 25.0% |
| ! | TTCCAGTACTTATATTCAAA+TGG | - | chr7_3:51156701-51156720 | Msa1108320:CDS | 25.0% |
| ! | AACCATTTGAATATAAGTAC+TGG | + | chr7_3:51156706-51156725 | None:intergenic | 25.0% |
| AGTACTTAAAAAATGGAACG+AGG | - | chr7_3:51152891-51152910 | Msa1108320:CDS | 30.0% | |
| GCTAAAATTATGTTAGTGGA+TGG | - | chr7_3:51153129-51153148 | Msa1108320:CDS | 30.0% | |
| TCTTGATGTTAACGAAGAAA+TGG | + | chr7_3:51153500-51153519 | None:intergenic | 30.0% | |
| AACACCTTAAGCCTATATAT+AGG | - | chr7_3:51153754-51153773 | Msa1108320:intron | 30.0% | |
| GTTAGTTAGTGCCTATATAT+AGG | + | chr7_3:51153768-51153787 | None:intergenic | 30.0% | |
| ! | TGTATCTTCTCATTTCAAGT+TGG | + | chr7_3:51153840-51153859 | None:intergenic | 30.0% |
| ACTTGAAATGAGAAGATACA+AGG | - | chr7_3:51153840-51153859 | Msa1108320:intron | 30.0% | |
| ! | ATATCCAAAAAAGAAGTGCA+AGG | - | chr7_3:51154107-51154126 | Msa1108320:intron | 30.0% |
| !!! | CTTGTTTTGTAATGGTTCTT+TGG | + | chr7_3:51154387-51154406 | None:intergenic | 30.0% |
| CATATATTGTTGGATAGTGT+TGG | + | chr7_3:51154458-51154477 | None:intergenic | 30.0% | |
| CAACACTATCCAACAATATA+TGG | - | chr7_3:51154456-51154475 | Msa1108320:intron | 30.0% | |
| ATTCTCACAAGTAGTTTAGT+TGG | + | chr7_3:51154533-51154552 | None:intergenic | 30.0% | |
| TTGCTAACAATACTTTGTTG+AGG | + | chr7_3:51154628-51154647 | None:intergenic | 30.0% | |
| AAGAAGTTCTCATTACACAA+TGG | - | chr7_3:51154672-51154691 | Msa1108320:intron | 30.0% | |
| TATCTGCCTCTAATAATAAC+CGG | - | chr7_3:51154742-51154761 | Msa1108320:intron | 30.0% | |
| !!! | TACATTGGATTTGTTTTGAG+AGG | + | chr7_3:51154834-51154853 | None:intergenic | 30.0% |
| ATCTGAACAAAAATGACAAC+CGG | - | chr7_3:51154901-51154920 | Msa1108320:intron | 30.0% | |
| GATCAATCTCTCAACAATAT+AGG | - | chr7_3:51154985-51155004 | Msa1108320:intron | 30.0% | |
| !! | CTCATCTTTCTGTTTGTTTT+CGG | + | chr7_3:51155416-51155435 | None:intergenic | 30.0% |
| CAAGAAATTAGAATCACACA+AGG | - | chr7_3:51155457-51155476 | Msa1108320:intron | 30.0% | |
| AAAGACAACACAAACGAAAT+TGG | - | chr7_3:51155514-51155533 | Msa1108320:intron | 30.0% | |
| AAGACAACACAAACGAAATT+GGG | - | chr7_3:51155515-51155534 | Msa1108320:intron | 30.0% | |
| ! | CCTCATTACTATTTTCTGTT+TGG | + | chr7_3:51155839-51155858 | None:intergenic | 30.0% |
| CCAAACAGAAAATAGTAATG+AGG | - | chr7_3:51155836-51155855 | Msa1108320:intron | 30.0% | |
| AACACCTTAAGCCTATATAT+AGG | - | chr7_3:51153754-51153773 | Msa1108320:intron | 30.0% | |
| GTTAGTTAGTGCCTATATAT+AGG | + | chr7_3:51153768-51153787 | None:intergenic | 30.0% | |
| ATGACATCAACAATTACTCT+CGG | - | chr7_3:51156727-51156746 | Msa1108320:CDS | 30.0% | |
| AGTTGTGATGATAAAATGCT+AGG | + | chr7_3:51156899-51156918 | None:intergenic | 30.0% | |
| !! | CTCACTTTTCGTTGTTAGAT+TGG | + | chr7_3:51152791-51152810 | None:intergenic | 35.0% |
| ATCTAACAACGAAAAGTGAG+TGG | - | chr7_3:51152791-51152810 | Msa1108320:CDS | 35.0% | |
| TCAATCAAGCAACATTTCAG+TGG | - | chr7_3:51152861-51152880 | Msa1108320:CDS | 35.0% | |
| CGTTTGGGAATTAGATAAAG+AGG | - | chr7_3:51153059-51153078 | Msa1108320:CDS | 35.0% | |
| TTGGAGCTTCTCATATCAAA+GGG | - | chr7_3:51153162-51153181 | Msa1108320:CDS | 35.0% | |
| TCTGTCTGATCTAATGTTGT+TGG | - | chr7_3:51153257-51153276 | Msa1108320:CDS | 35.0% | |
| GAAGAACAAAAAATGGGATC+TGG | + | chr7_3:51153287-51153306 | None:intergenic | 35.0% | |
| ! | CACATATGGAAAAAGTGTGT+GGG | + | chr7_3:51153319-51153338 | None:intergenic | 35.0% |
| ! | ACACATATGGAAAAAGTGTG+TGG | + | chr7_3:51153320-51153339 | None:intergenic | 35.0% |
| ! | TCATCTGGTTCAAACACATA+TGG | + | chr7_3:51153333-51153352 | None:intergenic | 35.0% |
| ! | AGAGTATCCTAAGACAGTAA+GGG | + | chr7_3:51153427-51153446 | None:intergenic | 35.0% |
| ATATTGTTCCTCCGTTCTAT+GGG | + | chr7_3:51153535-51153554 | None:intergenic | 35.0% | |
| ATATGTTGCACTGAGCAATA+TGG | - | chr7_3:51153551-51153570 | Msa1108320:intron | 35.0% | |
| !! | TGCAACATATTGTTTCTGCT+GGG | + | chr7_3:51153589-51153608 | None:intergenic | 35.0% |
| TAACAGTAACCCCTGAATTT+AGG | + | chr7_3:51153634-51153653 | None:intergenic | 35.0% | |
| TAAATTCAGGGGTTACTGTT+AGG | - | chr7_3:51153633-51153652 | Msa1108320:intron | 35.0% | |
| TATTTCTCTCTTTCCTTCCA+TGG | + | chr7_3:51153670-51153689 | None:intergenic | 35.0% | |
| AGTGCCTATATATAGGCTTA+AGG | + | chr7_3:51153761-51153780 | None:intergenic | 35.0% | |
| TTGAACACTTTCCAACTTGA+GGG | + | chr7_3:51153807-51153826 | None:intergenic | 35.0% | |
| TTTGAACACTTTCCAACTTG+AGG | + | chr7_3:51153808-51153827 | None:intergenic | 35.0% | |
| TTTCTTAGCCGATGTATTTC+CGG | + | chr7_3:51153873-51153892 | None:intergenic | 35.0% | |
| !! | TTGTTGATATTGGCTTCTAC+CGG | + | chr7_3:51153990-51154009 | None:intergenic | 35.0% |
| !!! | TCTTCCTTGCACTTCTTTTT+TGG | + | chr7_3:51154114-51154133 | None:intergenic | 35.0% |
| !!! | CACTTTTATCTTTGGAACCT+TGG | + | chr7_3:51154173-51154192 | None:intergenic | 35.0% |
| !!! | GCATTTGGTTTTTCTTGTCT+CGG | + | chr7_3:51154214-51154233 | None:intergenic | 35.0% |
| GACAAGAAAAACCAAATGCA+AGG | - | chr7_3:51154215-51154234 | Msa1108320:intron | 35.0% | |
| TGAACAAACTTCACACCAAA+AGG | - | chr7_3:51154274-51154293 | Msa1108320:intron | 35.0% | |
| !! | CACTTTTATCTTTGGAAGCT+TGG | + | chr7_3:51154317-51154336 | None:intergenic | 35.0% |
| TTCAAGTCCAACCATCAAAT+AGG | - | chr7_3:51154420-51154439 | Msa1108320:intron | 35.0% | |
| GGTTAGGTTCCATATATTGT+TGG | + | chr7_3:51154468-51154487 | None:intergenic | 35.0% | |
| !! | AACTTGTTCAGTTTTACTCC+TGG | + | chr7_3:51154510-51154529 | None:intergenic | 35.0% |
| ! | TTTGGTATGATTGGGAGTAT+TGG | + | chr7_3:51154599-51154618 | None:intergenic | 35.0% |
| !!! | GGTCGTTTTTTGGTATGATT+GGG | + | chr7_3:51154607-51154626 | None:intergenic | 35.0% |
| !!! | AGGTCGTTTTTTGGTATGAT+TGG | + | chr7_3:51154608-51154627 | None:intergenic | 35.0% |
| !!! | ACTTTGTTGAGGTCGTTTTT+TGG | + | chr7_3:51154617-51154636 | None:intergenic | 35.0% |
| GCTAAGCTTGGATTCAATAT+TGG | + | chr7_3:51154652-51154671 | None:intergenic | 35.0% | |
| ! | GTTTTGCTCCATCTTTACAT+TGG | + | chr7_3:51154849-51154868 | None:intergenic | 35.0% |
| ! | TGTTTGTTGAAAGTCCTCAA+TGG | + | chr7_3:51154931-51154950 | None:intergenic | 35.0% |
| GTTGAGAGATTGATCAGATT+TGG | + | chr7_3:51154980-51154999 | None:intergenic | 35.0% | |
| AGTCTTAAGTGTAAACGGAT+TGG | + | chr7_3:51155068-51155087 | None:intergenic | 35.0% | |
| !!! | CGTTTTGGTTATGATGAACT+TGG | + | chr7_3:51155213-51155232 | None:intergenic | 35.0% |
| ! | TTGTGTTGTTGTAGTGAACT+CGG | + | chr7_3:51155288-51155307 | None:intergenic | 35.0% |
| TACAACAACACAAACAGAAG+CGG | - | chr7_3:51155295-51155314 | Msa1108320:intron | 35.0% | |
| CGAAAACAAACAGAAAGATG+AGG | - | chr7_3:51155414-51155433 | Msa1108320:intron | 35.0% | |
| AAAGAGAAACAGACATCGTT+TGG | - | chr7_3:51155621-51155640 | Msa1108320:intron | 35.0% | |
| AAGAGAAACAGACATCGTTT+GGG | - | chr7_3:51155622-51155641 | Msa1108320:intron | 35.0% | |
| AATCGCAAACCCTAAGATTT+GGG | - | chr7_3:51155706-51155725 | Msa1108320:intron | 35.0% | |
| ! | GCATTTTTCCCCAAATCTTA+GGG | + | chr7_3:51155718-51155737 | None:intergenic | 35.0% |
| ! | TGCATTTTTCCCCAAATCTT+AGG | + | chr7_3:51155719-51155738 | None:intergenic | 35.0% |
| ATCGATCGAAGTAGTGAAAA+AGG | - | chr7_3:51155772-51155791 | Msa1108320:intron | 35.0% | |
| CGAAGTAGTGAAAAAGGAAT+CGG | - | chr7_3:51155778-51155797 | Msa1108320:intron | 35.0% | |
| GAAGTAGTGAAAAAGGAATC+GGG | - | chr7_3:51155779-51155798 | Msa1108320:intron | 35.0% | |
| ! | GAGGAAGAAAAGGATTTTCT+CGG | - | chr7_3:51155855-51155874 | Msa1108320:intron | 35.0% |
| ! | AGGAAGAAAAGGATTTTCTC+GGG | - | chr7_3:51155856-51155875 | Msa1108320:intron | 35.0% |
| ! | ATTTTCTCGAGAAAATGCAG+CGG | - | chr7_3:51155944-51155963 | Msa1108320:intron | 35.0% |
| AAATTTGGTATCCTCCTTGA+AGG | + | chr7_3:51155976-51155995 | None:intergenic | 35.0% | |
| ACATGGTATCAGAGCAAATT+TGG | + | chr7_3:51155991-51156010 | None:intergenic | 35.0% | |
| ATTTGCTCTGATACCATGTT+AGG | - | chr7_3:51155992-51156011 | Msa1108320:intron | 35.0% | |
| TGATACCATGTTAGGAAACA+TGG | - | chr7_3:51156000-51156019 | Msa1108320:intron | 35.0% | |
| TATTTCTCTCTTTCCTTCCA+TGG | + | chr7_3:51153670-51153689 | None:intergenic | 35.0% | |
| AGTGCCTATATATAGGCTTA+AGG | + | chr7_3:51153761-51153780 | None:intergenic | 35.0% | |
| ! | GCGTGTGAATTTTCATCAAT+TGG | - | chr7_3:51156284-51156303 | Msa1108320:CDS | 35.0% |
| CAAAAACAACAAAAGCCAAG+TGG | - | chr7_3:51156394-51156413 | Msa1108320:CDS | 35.0% | |
| AGCAATTAGATTACACCACT+TGG | + | chr7_3:51156412-51156431 | None:intergenic | 35.0% | |
| AGTGGTGTAATCTAATTGCT+TGG | - | chr7_3:51156412-51156431 | Msa1108320:CDS | 35.0% | |
| GTGGTGTAATCTAATTGCTT+GGG | - | chr7_3:51156413-51156432 | Msa1108320:CDS | 35.0% | |
| ! | CAATTTTGCTTGTGTTCTGT+TGG | + | chr7_3:51156503-51156522 | None:intergenic | 35.0% |
| ACAAGCAAAATTGTTTCCTG+CGG | - | chr7_3:51156510-51156529 | Msa1108320:CDS | 35.0% | |
| ! | TTTTCTTGTCCTTGAGAAGT+TGG | + | chr7_3:51156593-51156612 | None:intergenic | 35.0% |
| TACTGGAATCAACTACCTTA+TGG | + | chr7_3:51156689-51156708 | None:intergenic | 35.0% | |
| TGACATCAACAATTACTCTC+GGG | - | chr7_3:51156728-51156747 | Msa1108320:CDS | 35.0% | |
| ATCTTATAACCTGTTCTCGA+TGG | + | chr7_3:51156803-51156822 | None:intergenic | 35.0% | |
| ! | GAGAGAAGACCTTTTGCTTA+TGG | - | chr7_3:51152963-51152982 | Msa1108320:CDS | 40.0% |
| ! | AGACCTTTTGCTTATGGAAG+AGG | - | chr7_3:51152969-51152988 | Msa1108320:CDS | 40.0% |
| TGACCTCTTCCATAAGCAAA+AGG | + | chr7_3:51152975-51152994 | None:intergenic | 40.0% | |
| TAACCGAGCAGATAAAAGCT+TGG | - | chr7_3:51153020-51153039 | Msa1108320:CDS | 40.0% | |
| ! | GTTCATGTCGTTCGAGTTTA+AGG | + | chr7_3:51153107-51153126 | None:intergenic | 40.0% |
| ! | AGTGGATGGATGTTTTCTGT+TGG | - | chr7_3:51153143-51153162 | Msa1108320:CDS | 40.0% |
| GTTGGAGCTTCTCATATCAA+AGG | - | chr7_3:51153161-51153180 | Msa1108320:CDS | 40.0% | |
| AATCTTGCCCTTACTGTCTT+AGG | - | chr7_3:51153417-51153436 | Msa1108320:intron | 40.0% | |
| !! | GAGAGTATCCTAAGACAGTA+AGG | + | chr7_3:51153428-51153447 | None:intergenic | 40.0% |
| ACATACGGTAACTGAAGATC+AGG | + | chr7_3:51153450-51153469 | None:intergenic | 40.0% | |
| GACAAGATCAAGAATGTGAG+GGG | + | chr7_3:51153478-51153497 | None:intergenic | 40.0% | |
| GGACAAGATCAAGAATGTGA+GGG | + | chr7_3:51153479-51153498 | None:intergenic | 40.0% | |
| TGGACAAGATCAAGAATGTG+AGG | + | chr7_3:51153480-51153499 | None:intergenic | 40.0% | |
| !! | ATGTGAGAGTACCCATAGAA+CGG | - | chr7_3:51153521-51153540 | Msa1108320:intron | 40.0% |
| CATATTGTTCCTCCGTTCTA+TGG | + | chr7_3:51153536-51153555 | None:intergenic | 40.0% | |
| !! | GTGCAACATATTGTTTCTGC+TGG | + | chr7_3:51153590-51153609 | None:intergenic | 40.0% |
| CTCAGAGACTCCTAAATTCA+GGG | - | chr7_3:51153621-51153640 | Msa1108320:intron | 40.0% | |
| TCAGAGACTCCTAAATTCAG+GGG | - | chr7_3:51153622-51153641 | Msa1108320:intron | 40.0% | |
| TGAACACTTTCCAACTTGAG+GGG | + | chr7_3:51153806-51153825 | None:intergenic | 40.0% | |
| GAAGATACAAGGAAAGATGC+CGG | - | chr7_3:51153851-51153870 | Msa1108320:intron | 40.0% | |
| GAAAGATGCCGGAAATACAT+CGG | - | chr7_3:51153862-51153881 | Msa1108320:intron | 40.0% | |
| ACAACTCAAGGTTGAACCAA+GGG | - | chr7_3:51153929-51153948 | Msa1108320:intron | 40.0% | |
| ! | GTTAAGCGTTGTGCCTTAAT+TGG | + | chr7_3:51154015-51154034 | None:intergenic | 40.0% |
| GAGTTCTTGAGAACTCTTGA+TGG | + | chr7_3:51154037-51154056 | None:intergenic | 40.0% | |
| AGCACAAGACAAGAAGAACA+AGG | - | chr7_3:51154065-51154084 | Msa1108320:intron | 40.0% | |
| !!! | GAGGGCATCACTTTTATCTT+TGG | + | chr7_3:51154181-51154200 | None:intergenic | 40.0% |
| !! | TTGTTGCTTCATGGTCCTTT+TGG | + | chr7_3:51154292-51154311 | None:intergenic | 40.0% |
| !!! | AGCTTGGTTTTGTTGCTTCA+TGG | + | chr7_3:51154301-51154320 | None:intergenic | 40.0% |
| !!! | GAGGGCATCACTTTTATCTT+TGG | + | chr7_3:51154181-51154200 | None:intergenic | 40.0% |
| !! | TAGCTTGATTTGGCATAGGA+GGG | + | chr7_3:51154343-51154362 | None:intergenic | 40.0% |
| !! | ACAGTAGCTTGATTTGGCAT+AGG | + | chr7_3:51154347-51154366 | None:intergenic | 40.0% |
| CTCATCACAGTAGCTTGATT+TGG | + | chr7_3:51154353-51154372 | None:intergenic | 40.0% | |
| TCAAGCTACTGTGATGAGTA+TGG | - | chr7_3:51154355-51154374 | Msa1108320:intron | 40.0% | |
| CAAGCTACTGTGATGAGTAT+GGG | - | chr7_3:51154356-51154375 | Msa1108320:intron | 40.0% | |
| ! | ACTAGAGCCTATTTGATGGT+TGG | + | chr7_3:51154430-51154449 | None:intergenic | 40.0% |
| GTCTACTAGAGCCTATTTGA+TGG | + | chr7_3:51154434-51154453 | None:intergenic | 40.0% | |
| !!! | GTGTGTGCAGTTTTTTGGTT+AGG | + | chr7_3:51154484-51154503 | None:intergenic | 40.0% |
| TGAGAACTTCTTGCTAAGCT+TGG | + | chr7_3:51154664-51154683 | None:intergenic | 40.0% | |
| GGTCGATAAGAAACAAGAGT+AGG | - | chr7_3:51154693-51154712 | Msa1108320:intron | 40.0% | |
| GAGGCAGATATTGTTGTCAT+TGG | + | chr7_3:51154732-51154751 | None:intergenic | 40.0% | |
| CCATGACCGGTTATTATTAG+AGG | + | chr7_3:51154751-51154770 | None:intergenic | 40.0% | |
| CCTCTAATAATAACCGGTCA+TGG | - | chr7_3:51154748-51154767 | Msa1108320:intron | 40.0% | |
| TAATAACCGGTCATGGTGAA+TGG | - | chr7_3:51154755-51154774 | Msa1108320:intron | 40.0% | |
| GAAAGTCCTCAATGGAAAAC+CGG | + | chr7_3:51154923-51154942 | None:intergenic | 40.0% | |
| TTGCTACTATTGTGCTCACA+AGG | + | chr7_3:51154954-51154973 | None:intergenic | 40.0% | |
| CAGAATGTAGACAACTATGC+AGG | - | chr7_3:51155035-51155054 | Msa1108320:intron | 40.0% | |
| CATAACCAAAACGATCTGAG+AGG | - | chr7_3:51155220-51155239 | Msa1108320:intron | 40.0% | |
| ! | TTTCTCCTCTCAGATCGTTT+TGG | + | chr7_3:51155228-51155247 | None:intergenic | 40.0% |
| TCTGAGAGGAGAAAGAAACA+AGG | - | chr7_3:51155234-51155253 | Msa1108320:intron | 40.0% | |
| ! | TCTCCTTTTCTCACTACTCT+CGG | + | chr7_3:51155347-51155366 | None:intergenic | 40.0% |
| ACAGACATCGTTTGGGAATT+AGG | - | chr7_3:51155629-51155648 | Msa1108320:intron | 40.0% | |
| GAATCGCAAACCCTAAGATT+TGG | - | chr7_3:51155705-51155724 | Msa1108320:intron | 40.0% | |
| ATCGCAAACCCTAAGATTTG+GGG | - | chr7_3:51155707-51155726 | Msa1108320:intron | 40.0% | |
| !! | CTCAGGGAGTTTCACTTTTA+TGG | + | chr7_3:51156166-51156185 | None:intergenic | 40.0% |
| CCCATATTTAGCATAGTGAG+CGG | + | chr7_3:51156204-51156223 | None:intergenic | 40.0% | |
| CCGCTCACTATGCTAAATAT+GGG | - | chr7_3:51156201-51156220 | Msa1108320:intron | 40.0% | |
| TCAATTGGATTTGGACCAAG+AGG | - | chr7_3:51156299-51156318 | Msa1108320:CDS | 40.0% | |
| AACCTTTCAATTCCACCTCT+TGG | + | chr7_3:51156317-51156336 | None:intergenic | 40.0% | |
| AGAGGTGGAATTGAAAGGTT+TGG | - | chr7_3:51156317-51156336 | Msa1108320:CDS | 40.0% | |
| TTTCCTGCGGCAAATTTACT+TGG | - | chr7_3:51156523-51156542 | Msa1108320:CDS | 40.0% | |
| TTCCTGCGGCAAATTTACTT+GGG | - | chr7_3:51156524-51156543 | Msa1108320:CDS | 40.0% | |
| AGATGATGTCCAACTTCTCA+AGG | - | chr7_3:51156581-51156600 | Msa1108320:CDS | 40.0% | |
| CAAGGACAAGAAAATCGTTG+TGG | - | chr7_3:51156599-51156618 | Msa1108320:CDS | 40.0% | |
| ! | TTTTTCCGCACAATAGCACT+TGG | - | chr7_3:51156657-51156676 | Msa1108320:CDS | 40.0% |
| AATCACATACCATCGAGAAC+AGG | - | chr7_3:51156791-51156810 | Msa1108320:CDS | 40.0% | |
| ACGAGGATGCTTACATTCCA+AGG | - | chr7_3:51152908-51152927 | Msa1108320:CDS | 45.0% | |
| GGATGCTTACATTCCAAGGA+AGG | - | chr7_3:51152912-51152931 | Msa1108320:CDS | 45.0% | |
| !! | ATTCCAAGGAAGGTGTCGAT+CGG | - | chr7_3:51152922-51152941 | Msa1108320:CDS | 45.0% |
| TGTCGATCGGACCAAGATTT+AGG | - | chr7_3:51152935-51152954 | Msa1108320:CDS | 45.0% | |
| GTCGATCGGACCAAGATTTA+GGG | - | chr7_3:51152936-51152955 | Msa1108320:CDS | 45.0% | |
| TCGATCGGACCAAGATTTAG+GGG | - | chr7_3:51152937-51152956 | Msa1108320:CDS | 45.0% | |
| TCTCTCCTTCCCCTAAATCT+TGG | + | chr7_3:51152949-51152968 | None:intergenic | 45.0% | |
| ! | GCTCCAAGCTTTTATCTGCT+CGG | + | chr7_3:51153026-51153045 | None:intergenic | 45.0% |
| AGCAATGCAGTGATGTCGTT+TGG | - | chr7_3:51153043-51153062 | Msa1108320:CDS | 45.0% | |
| ! | GCAATGCAGTGATGTCGTTT+GGG | - | chr7_3:51153044-51153063 | Msa1108320:CDS | 45.0% |
| ! | TCTTTTAGCACTTCAGCTGC+GGG | + | chr7_3:51153228-51153247 | None:intergenic | 45.0% |
| ! | GTCTTTTAGCACTTCAGCTG+CGG | + | chr7_3:51153229-51153248 | None:intergenic | 45.0% |
| GCTCAGAGACTCCTAAATTC+AGG | - | chr7_3:51153620-51153639 | Msa1108320:intron | 45.0% | |
| GGGGTTACTGTTAGGAAACA+TGG | - | chr7_3:51153641-51153660 | Msa1108320:intron | 45.0% | |
| GTTAGGAAACATGGCATCCA+TGG | - | chr7_3:51153650-51153669 | Msa1108320:intron | 45.0% | |
| TCTAATAGTCCCCCTCAAGT+TGG | - | chr7_3:51153793-51153812 | Msa1108320:intron | 45.0% | |
| GAACACTTTCCAACTTGAGG+GGG | + | chr7_3:51153805-51153824 | None:intergenic | 45.0% | |
| GAGTTGTGGTTGCTTCTTGT+TGG | + | chr7_3:51153916-51153935 | None:intergenic | 45.0% | |
| CAAGAAGCAACCACAACTCA+AGG | - | chr7_3:51153917-51153936 | Msa1108320:intron | 45.0% | |
| ! | CTTGGTTCAACCTTGAGTTG+TGG | + | chr7_3:51153930-51153949 | None:intergenic | 45.0% |
| CACAACTCAAGGTTGAACCA+AGG | - | chr7_3:51153928-51153947 | Msa1108320:intron | 45.0% | |
| !! | TGATATTGGCTTCTACCGGA+TGG | + | chr7_3:51153986-51154005 | None:intergenic | 45.0% |
| GGAAGAGCCATAGTCTACAA+TGG | - | chr7_3:51154128-51154147 | Msa1108320:intron | 45.0% | |
| GAGCCATAGTCTACAATGGA+AGG | - | chr7_3:51154132-51154151 | Msa1108320:intron | 45.0% | |
| CCTCCTTCCATTGTAGACTA+TGG | + | chr7_3:51154138-51154157 | None:intergenic | 45.0% | |
| CCATAGTCTACAATGGAAGG+AGG | - | chr7_3:51154135-51154154 | Msa1108320:intron | 45.0% | |
| GGAGGTCATATGTAAGACCA+AGG | - | chr7_3:51154153-51154172 | Msa1108320:intron | 45.0% | |
| ! | TGGTTTTTCTTGTCTCGGCT+CGG | + | chr7_3:51154209-51154228 | None:intergenic | 45.0% |
| CTATGGCTCTTCCTTGCATT+TGG | + | chr7_3:51154229-51154248 | None:intergenic | 45.0% | |
| GGAAGAGCCATAGTCAACAA+TGG | - | chr7_3:51154236-51154255 | Msa1108320:intron | 45.0% | |
| GAGCCATAGTCAACAATGGA+AGG | - | chr7_3:51154240-51154259 | Msa1108320:intron | 45.0% | |
| ! | CCTCCTTCCATTGTTGACTA+TGG | + | chr7_3:51154246-51154265 | None:intergenic | 45.0% |
| CCATAGTCAACAATGGAAGG+AGG | - | chr7_3:51154243-51154262 | Msa1108320:intron | 45.0% | |
| !! | GTAGCTTGATTTGGCATAGG+AGG | + | chr7_3:51154344-51154363 | None:intergenic | 45.0% |
| !!! | GGATCGTGTGTGCAGTTTTT+TGG | + | chr7_3:51154489-51154508 | None:intergenic | 45.0% |
| AAAAACTGCACACACGATCC+AGG | - | chr7_3:51154489-51154508 | Msa1108320:intron | 45.0% | |
| CAAGAGTAGGTAACTGATGC+AGG | - | chr7_3:51154706-51154725 | Msa1108320:intron | 45.0% | |
| !! | TGACAACCGGTTTTCCATTG+AGG | - | chr7_3:51154914-51154933 | Msa1108320:intron | 45.0% |
| GTGAAGAATGAAGTGAAGCC+AGG | - | chr7_3:51155186-51155205 | Msa1108320:intron | 45.0% | |
| GGTTATGATGAACTTGGTCC+TGG | + | chr7_3:51155207-51155226 | None:intergenic | 45.0% | |
| AACACAAACAGAAGCGGAAC+TGG | - | chr7_3:51155301-51155320 | Msa1108320:intron | 45.0% | |
| TGGCTCAAACACAACAATCC+AGG | - | chr7_3:51155321-51155340 | Msa1108320:intron | 45.0% | |
| GGACGAATCACAAACTGAGA+AGG | - | chr7_3:51155536-51155555 | Msa1108320:intron | 45.0% | |
| CAACAGAATCGCGATCGTAA+CGG | - | chr7_3:51155683-51155702 | Msa1108320:intron | 45.0% | |
| TGCAGCGGAAAAATCCTTCA+AGG | - | chr7_3:51155959-51155978 | Msa1108320:intron | 45.0% | |
| AGCGGAAAAATCCTTCAAGG+AGG | - | chr7_3:51155962-51155981 | Msa1108320:intron | 45.0% | |
| GGATGCCATGTTTCCTAACA+TGG | + | chr7_3:51153649-51153668 | None:intergenic | 45.0% | |
| GTTAGGAAACATGGCATCCA+TGG | - | chr7_3:51153650-51153669 | Msa1108320:intron | 45.0% | |
| GCACAACATGCTCTTTCTCA+GGG | + | chr7_3:51156182-51156201 | None:intergenic | 45.0% | |
| GCCGCTCACTATGCTAAATA+TGG | - | chr7_3:51156200-51156219 | Msa1108320:intron | 45.0% | |
| ATTGGATTTGGACCAAGAGG+TGG | - | chr7_3:51156302-51156321 | Msa1108320:CDS | 45.0% | |
| GACCAAGAGGTGGAATTGAA+AGG | - | chr7_3:51156312-51156331 | Msa1108320:CDS | 45.0% | |
| TCATCCTCGTCTTCGTATCT+AGG | + | chr7_3:51156477-51156496 | None:intergenic | 45.0% | |
| GGAAAAACTCCATCAGCTCT+TGG | + | chr7_3:51156644-51156663 | None:intergenic | 45.0% | |
| ! | CAACTCCAAGTGCTATTGTG+CGG | + | chr7_3:51156665-51156684 | None:intergenic | 45.0% |
| AGCACTTGGAGTTGACCATA+AGG | - | chr7_3:51156671-51156690 | Msa1108320:CDS | 45.0% | |
| TCGGACCAAGATTTAGGGGA+AGG | - | chr7_3:51152941-51152960 | Msa1108320:CDS | 50.0% | |
| AGAGGTTCGTGAATGCTACC+TGG | - | chr7_3:51153077-51153096 | Msa1108320:CDS | 50.0% | |
| GAGGTTCGTGAATGCTACCT+GGG | - | chr7_3:51153078-51153097 | Msa1108320:CDS | 50.0% | |
| ! | GTTCGAGTTTAAGGTCTCCC+AGG | + | chr7_3:51153098-51153117 | None:intergenic | 50.0% |
| CTAGGCGGAAATAAACGGCT+TGG | + | chr7_3:51153204-51153223 | None:intergenic | 50.0% | |
| CGGGACTAGGCGGAAATAAA+CGG | + | chr7_3:51153209-51153228 | None:intergenic | 50.0% | |
| GAATAGGGACGAGAGTCATC+TGG | + | chr7_3:51153348-51153367 | None:intergenic | 50.0% | |
| TGTTCCCCTCGAGGAGAATA+GGG | + | chr7_3:51153363-51153382 | None:intergenic | 50.0% | |
| ATGTTCCCCTCGAGGAGAAT+AGG | + | chr7_3:51153364-51153383 | None:intergenic | 50.0% | |
| ATTCTCCTCGAGGGGAACAT+AGG | - | chr7_3:51153364-51153383 | Msa1108320:CDS | 50.0% | |
| TCGAGGGGAACATAGGAAGA+CGG | - | chr7_3:51153371-51153390 | Msa1108320:CDS | 50.0% | |
| AACATAGGAAGACGGAGGAG+AGG | - | chr7_3:51153379-51153398 | Msa1108320:CDS | 50.0% | |
| ACATAGGAAGACGGAGGAGA+GGG | - | chr7_3:51153380-51153399 | Msa1108320:CDS | 50.0% | |
| !! | ATGTGAGGGGCATCGACATA+CGG | + | chr7_3:51153465-51153484 | None:intergenic | 50.0% |
| !! | TGAGAGTACCCATAGAACGG+AGG | - | chr7_3:51153524-51153543 | Msa1108320:intron | 50.0% |
| GGAAACATGGCATCCATGGA+AGG | - | chr7_3:51153654-51153673 | Msa1108320:intron | 50.0% | |
| CTCAAGGTTGAACCAAGGGA+AGG | - | chr7_3:51153933-51153952 | Msa1108320:intron | 50.0% | |
| AGGTTGAACCAAGGGAAGGA+AGG | - | chr7_3:51153937-51153956 | Msa1108320:intron | 50.0% | |
| TTGATGCTCCTTCCTTCCCT+TGG | + | chr7_3:51153948-51153967 | None:intergenic | 50.0% | |
| AGCAACGCTTAACCACCATC+CGG | - | chr7_3:51153968-51153987 | Msa1108320:intron | 50.0% | |
| !! | TATTGGCTTCTACCGGATGG+TGG | + | chr7_3:51153983-51154002 | None:intergenic | 50.0% |
| ! | CATGTGCCATTCACCATGAC+CGG | + | chr7_3:51154764-51154783 | None:intergenic | 50.0% |
| CAGATTGATGTGCTCGTTGC+TGG | + | chr7_3:51154886-51154905 | None:intergenic | 50.0% | |
| ! | TTTTCTCACTACTCTCGGCC+TGG | + | chr7_3:51155342-51155361 | None:intergenic | 50.0% |
| AGGCCGAGAGTAGTGAGAAA+AGG | - | chr7_3:51155341-51155360 | Msa1108320:intron | 50.0% | |
| GGGAACAGAGAGAACACGAA+GGG | - | chr7_3:51155799-51155818 | Msa1108320:intron | 50.0% | |
| GGAAACATGGCATCCATGGA+AGG | - | chr7_3:51153654-51153673 | Msa1108320:intron | 50.0% | |
| GGCACAACATGCTCTTTCTC+AGG | + | chr7_3:51156183-51156202 | None:intergenic | 50.0% | |
| TTCGTATCTAGGAGCGAGAC+GGG | + | chr7_3:51156466-51156485 | None:intergenic | 50.0% | |
| CTTCGTATCTAGGAGCGAGA+CGG | + | chr7_3:51156467-51156486 | None:intergenic | 50.0% | |
| AGCCCAAGTAAATTTGCCGC+AGG | + | chr7_3:51156529-51156548 | None:intergenic | 50.0% | |
| CATGAGCAACCAAGAGCTGA+TGG | - | chr7_3:51156632-51156651 | Msa1108320:CDS | 50.0% | |
| TCGCAGGGAAGTTGTAATCG+TGG | + | chr7_3:51156833-51156852 | None:intergenic | 50.0% | |
| TCTCGTCCCTATTCTCCTCG+AGG | - | chr7_3:51153354-51153373 | Msa1108320:CDS | 55.0% | |
| CTCGTCCCTATTCTCCTCGA+GGG | - | chr7_3:51153355-51153374 | Msa1108320:CDS | 55.0% | |
| TCGTCCCTATTCTCCTCGAG+GGG | - | chr7_3:51153356-51153375 | Msa1108320:CDS | 55.0% | |
| GTCTTCCTATGTTCCCCTCG+AGG | + | chr7_3:51153372-51153391 | None:intergenic | 55.0% | |
| AGGGGAACATAGGAAGACGG+AGG | - | chr7_3:51153374-51153393 | Msa1108320:CDS | 55.0% | |
| !! | TTCTTGTCTCGGCTCGGCAT+AGG | + | chr7_3:51154203-51154222 | None:intergenic | 55.0% |
| CTCTGCGTACTGTGCACACA+AGG | + | chr7_3:51155102-51155121 | None:intergenic | 55.0% | |
| CTTGTGTGCACAGTACGCAG+AGG | - | chr7_3:51155100-51155119 | Msa1108320:intron | 55.0% | |
| CGGGAACAGAGAGAACACGA+AGG | - | chr7_3:51155798-51155817 | Msa1108320:intron | 55.0% | |
| CGCTCCTAGATACGAAGACG+AGG | - | chr7_3:51156470-51156489 | Msa1108320:CDS | 55.0% | |
| TTACAACTTCCCTGCGACGC+TGG | - | chr7_3:51156836-51156855 | Msa1108320:CDS | 55.0% | |
| GGTCCGATCGACACCTTCCT+TGG | + | chr7_3:51152928-51152947 | None:intergenic | 60.0% | |
| ACTTCAGCTGCGGGACTAGG+CGG | + | chr7_3:51153219-51153238 | None:intergenic | 60.0% | |
| AGCACTTCAGCTGCGGGACT+AGG | + | chr7_3:51153222-51153241 | None:intergenic | 60.0% | |
| !! | TGTCTCGGCTCGGCATAGGA+GGG | + | chr7_3:51154199-51154218 | None:intergenic | 60.0% |
| !! | TTGTCTCGGCTCGGCATAGG+AGG | + | chr7_3:51154200-51154219 | None:intergenic | 60.0% |
| GAACAGACACCAGCGTCGCA+GGG | + | chr7_3:51156848-51156867 | None:intergenic | 60.0% | |
| AGAACAGACACCAGCGTCGC+AGG | + | chr7_3:51156849-51156868 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 51152784 | 51156920 | 51152784 | ID=Msa1108320;Name=Msa1108320 |
| chr7_3 | mRNA | 51152784 | 51156920 | 51152784 | ID=Msa1108320-mRNA-1;Parent=Msa1108320;Name=Msa1108320-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|440 |
| chr7_3 | exon | 51156241 | 51156920 | 51156241 | ID=Msa1108320-mRNA-1:exon:10499;Parent=Msa1108320-mRNA-1 |
| chr7_3 | exon | 51152784 | 51153426 | 51152784 | ID=Msa1108320-mRNA-1:exon:10498;Parent=Msa1108320-mRNA-1 |
| chr7_3 | CDS | 51156241 | 51156920 | 51156241 | ID=Msa1108320-mRNA-1:cds;Parent=Msa1108320-mRNA-1 |
| chr7_3 | CDS | 51152784 | 51153426 | 51152784 | ID=Msa1108320-mRNA-1:cds;Parent=Msa1108320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
