AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650520 MtrunA17_Chr4g0042831 96.134 388 12 1 1 385 1 388 0.0 774
Msa0650520 MtrunA17_Chr5g0418191 55.281 445 113 14 2 385 13 432 1.02e-140 407
Msa0650520 MtrunA17_Chr7g0218081 41.057 492 168 15 11 385 33 519 2.64e-101 310
Msa0650520 MtrunA17_Chr7g0243891 43.642 346 129 10 65 375 148 462 3.16e-75 243
Msa0650520 MtrunA17_Chr3g0101131 50.193 259 82 6 137 352 235 489 3.36e-75 244
Msa0650520 MtrunA17_Chr5g0445311 49.802 253 94 4 127 347 182 433 2.12e-74 241
Msa0650520 MtrunA17_Chr5g0445311 36.957 138 76 3 145 272 364 500 2.85e-14 74.3
Msa0650520 MtrunA17_Chr3g0106491 51.271 236 79 5 140 340 193 427 2.55e-71 231
Msa0650520 MtrunA17_Chr4g0004911 46.992 266 96 7 94 340 159 398 8.81e-70 227
Msa0650520 MtrunA17_Chr5g0432161 49.398 249 74 6 140 340 239 483 2.29e-68 226
Msa0650520 MtrunA17_Chr7g0263531 45.174 259 101 5 136 354 180 437 1.94e-65 214
Msa0650520 MtrunA17_Chr5g0447701 39.754 244 116 5 133 347 80 321 1.16e-46 164
Msa0650520 MtrunA17_Chr4g0074001 36.190 315 154 8 71 340 109 421 6.09e-46 164
Msa0650520 MtrunA17_Chr4g0074001 52.381 63 30 0 146 208 360 422 9.82e-13 69.3
Msa0650520 MtrunA17_Chr3g0079691 53.595 153 61 2 224 367 433 584 3.14e-42 157
Msa0650520 MtrunA17_Chr3g0079691 70.312 64 18 1 145 208 280 342 1.65e-23 102
Msa0650520 MtrunA17_Chr3g0079691 60.000 60 23 1 278 337 280 338 1.65e-14 75.1
Msa0650520 MtrunA17_Chr3g0079691 48.837 86 39 2 132 215 485 567 1.71e-14 75.1
Msa0650520 MtrunA17_Chr7g0249311 54.135 133 53 1 212 344 334 458 2.08e-40 151
Msa0650520 MtrunA17_Chr7g0249311 68.657 67 20 1 142 208 176 241 1.19e-23 102
Msa0650520 MtrunA17_Chr7g0249311 41.121 107 50 3 278 372 179 284 1.10e-15 79.0
Msa0650520 MtrunA17_Chr7g0249301 67.708 96 31 0 245 340 259 354 2.09e-39 144
Msa0650520 MtrunA17_Chr7g0249301 63.492 63 22 1 146 208 63 124 5.14e-19 87.8
Msa0650520 MtrunA17_Chr7g0249301 46.154 91 39 2 277 358 61 150 2.20e-15 77.0
Msa0650520 MtrunA17_Chr7g0249301 49.315 73 34 1 132 204 282 351 8.86e-13 68.9
Msa0650520 MtrunA17_Chr1g0188941 61.728 81 31 0 257 337 30 110 2.93e-34 122
Msa0650520 MtrunA17_Chr1g0188941 46.988 83 43 1 124 206 31 112 3.23e-18 79.7
Msa0650520 MtrunA17_Chr5g0447711 32.328 232 141 4 133 349 71 301 9.52e-31 119
Msa0650520 MtrunA17_Chr5g0447711 36.842 76 48 0 145 220 230 305 2.63e-12 67.0
Msa0650520 MtrunA17_Chr4g0051881 51.429 105 51 0 235 339 135 239 1.67e-29 116
Msa0650520 MtrunA17_Chr4g0051881 45.570 79 40 2 131 209 165 240 5.63e-14 72.4
Msa0650520 MtrunA17_Chr1g0194481 48.696 115 56 1 227 338 104 218 3.97e-29 115
Msa0650520 MtrunA17_Chr1g0194481 53.125 64 30 0 145 208 158 221 1.50e-16 79.7
Msa0650520 MtrunA17_Chr7g0270191 62.025 79 30 0 265 343 132 210 1.79e-28 112
Msa0650520 MtrunA17_Chr7g0270191 42.000 100 57 1 109 208 110 208 6.55e-16 77.8
Msa0650520 MtrunA17_Chr8g0335811 57.647 85 35 1 259 343 135 218 4.76e-28 110
Msa0650520 MtrunA17_Chr8g0335811 51.429 70 31 1 132 201 144 210 2.01e-14 72.0
Msa0650520 MtrunA17_Chr5g0443131 61.842 76 29 0 264 339 143 218 8.13e-28 111
Msa0650520 MtrunA17_Chr5g0443131 51.667 60 29 0 145 204 157 216 1.17e-14 73.9
Msa0650520 MtrunA17_Chr3g0129361 47.115 104 43 1 261 364 127 218 1.19e-27 108
Msa0650520 MtrunA17_Chr3g0129361 54.386 57 26 0 145 201 144 200 1.77e-14 72.0
Msa0650520 MtrunA17_Chr8g0383351 52.747 91 38 2 261 346 142 232 2.60e-26 105
Msa0650520 MtrunA17_Chr8g0383351 51.471 68 32 1 134 201 150 216 8.68e-16 76.3
Msa0650520 MtrunA17_Chr7g0224801 56.250 80 35 0 269 348 84 163 2.67e-26 103
Msa0650520 MtrunA17_Chr7g0224801 50.649 77 32 2 145 221 93 163 4.04e-16 75.5
Msa0650520 MtrunA17_Chr2g0294231 59.740 77 31 0 263 339 188 264 3.94e-26 108
Msa0650520 MtrunA17_Chr2g0294231 48.750 80 40 1 129 208 188 266 5.95e-17 81.6
Msa0650520 MtrunA17_Chr5g0418781 57.895 76 32 0 259 334 105 180 1.97e-25 104
Msa0650520 MtrunA17_Chr5g0418781 44.872 78 40 1 145 219 124 201 2.13e-15 75.9
Msa0650520 MtrunA17_Chr8g0386241 47.253 91 48 0 259 349 84 174 5.77e-25 100
Msa0650520 MtrunA17_Chr8g0386241 54.386 57 26 0 145 201 103 159 3.15e-15 73.2
Msa0650520 MtrunA17_Chr8g0383251 45.098 102 43 1 236 337 79 167 1.12e-24 99.8
Msa0650520 MtrunA17_Chr8g0383251 49.206 63 32 0 145 207 108 170 6.71e-12 63.9
Msa0650520 MtrunA17_Chr4g0068541 56.757 74 32 0 265 338 195 268 3.02e-23 100
Msa0650520 MtrunA17_Chr4g0068541 55.000 60 27 0 145 204 208 267 1.68e-16 80.5
Msa0650520 MtrunA17_Chr7g0248721 43.333 120 67 1 215 334 78 196 4.28e-23 96.3
Msa0650520 MtrunA17_Chr7g0248721 51.613 62 29 1 140 201 136 196 1.27e-13 69.7
Msa0650520 MtrunA17_Chr6g0485431 56.000 75 32 1 264 337 140 214 1.06e-22 98.2
Msa0650520 MtrunA17_Chr6g0485431 45.833 72 37 2 138 208 148 218 5.81e-13 69.7
Msa0650520 MtrunA17_Chr1g0147881 50.505 99 37 3 242 339 237 324 1.10e-22 97.8
Msa0650520 MtrunA17_Chr1g0150801 52.778 72 34 0 263 334 87 158 1.27e-22 93.6
Msa0650520 MtrunA17_Chr1g0150801 50.877 57 28 0 145 201 102 158 2.89e-13 67.4
Msa0650520 MtrunA17_Chr3g0129321 52.000 75 36 0 264 338 104 178 1.38e-22 94.7
Msa0650520 MtrunA17_Chr3g0129321 36.364 143 68 3 107 226 62 204 6.11e-15 73.2
Msa0650520 MtrunA17_Chr1g0189391 49.462 93 46 1 265 356 84 176 1.69e-22 97.1
Msa0650520 MtrunA17_Chr1g0189391 42.857 77 38 2 145 215 97 173 2.51e-11 64.3
Msa0650520 MtrunA17_Chr7g0270831 46.809 94 49 1 249 341 187 280 1.69e-22 98.6
Msa0650520 MtrunA17_Chr4g0025061 49.383 81 40 1 260 339 342 422 7.38e-22 97.4
Msa0650520 MtrunA17_Chr4g0025061 33.588 131 65 4 121 230 318 447 5.25e-11 64.3
Msa0650520 MtrunA17_Chr3g0099641 47.561 82 42 1 257 337 230 311 1.11e-21 96.3
Msa0650520 MtrunA17_Chr3g0099641 42.500 80 43 2 146 222 252 331 4.11e-11 64.3
Msa0650520 MtrunA17_Chr2g0288871 50.633 79 38 1 260 337 287 365 1.23e-21 96.7
Msa0650520 MtrunA17_Chr4g0075201 49.383 81 40 1 260 339 249 329 3.21e-21 95.1
Msa0650520 MtrunA17_Chr2g0322391 49.383 81 40 1 260 339 331 411 4.22e-21 95.1
Msa0650520 MtrunA17_Chr2g0322391 40.741 81 45 2 145 222 349 429 3.55e-11 64.7
Msa0650520 MtrunA17_Chr4g0060271 51.316 76 36 1 263 337 240 315 7.46e-21 94.4
Msa0650520 MtrunA17_Chr4g0060271 49.180 61 30 1 145 204 255 315 6.07e-11 63.9
Msa0650520 MtrunA17_Chr4g0051181 50.649 77 37 1 263 338 228 304 1.72e-20 92.8
Msa0650520 MtrunA17_Chr2g0302391 43.617 94 52 1 263 355 196 289 5.05e-20 91.3
Msa0650520 MtrunA17_Chr7g0216891 41.228 114 63 3 225 334 163 276 6.28e-20 91.7
Msa0650520 MtrunA17_Chr4g0071521 47.312 93 37 3 243 334 221 302 1.42e-19 88.6
Msa0650520 MtrunA17_Chr2g0333851 43.689 103 42 3 263 349 139 241 1.95e-19 88.2
Msa0650520 MtrunA17_Chr2g0333851 48.529 68 34 1 146 212 170 237 5.37e-13 69.3
Msa0650520 MtrunA17_Chr5g0401821 52.000 75 35 1 275 348 196 270 2.80e-19 87.0
Msa0650520 MtrunA17_Chr3g0136961 48.837 86 38 4 255 334 110 195 3.00e-19 87.4
Msa0650520 MtrunA17_Chr3g0136961 47.222 72 36 2 146 215 139 210 5.98e-12 65.9
Msa0650520 MtrunA17_Chr4g0025051 46.914 81 42 1 260 339 317 397 4.52e-19 89.0
Msa0650520 MtrunA17_Chr4g0053281 46.739 92 45 2 259 349 250 338 4.93e-19 87.4
Msa0650520 MtrunA17_Chr7g0270051 52.857 70 32 1 279 347 54 123 6.75e-19 85.5
Msa0650520 MtrunA17_Chr7g0270051 39.535 86 44 3 139 218 42 125 2.29e-11 63.9
Msa0650520 MtrunA17_Chr5g0432071 42.969 128 64 5 120 240 79 204 7.54e-19 84.3
Msa0650520 MtrunA17_Chr5g0432071 46.914 81 41 2 278 358 104 182 7.43e-15 73.2
Msa0650520 MtrunA17_Chr7g0238921 59.322 59 24 0 276 334 122 180 8.97e-19 86.3
Msa0650520 MtrunA17_Chr7g0238921 54.386 57 26 0 145 201 124 180 2.24e-14 73.6
Msa0650520 MtrunA17_Chr1g0184691 46.591 88 45 2 258 343 273 360 1.52e-18 86.3
Msa0650520 MtrunA17_Chr2g0284321 47.059 85 42 2 279 362 36 118 5.41e-18 82.0
Msa0650520 MtrunA17_Chr2g0284321 35.043 117 65 3 125 232 7 121 9.66e-12 63.9
Msa0650520 MtrunA17_Chr1g0150281 46.341 82 38 3 259 334 116 197 5.50e-18 83.6
Msa0650520 MtrunA17_Chr8g0379461 51.515 66 31 1 279 343 77 142 6.62e-18 82.4
Msa0650520 MtrunA17_Chr2g0293481 41.584 101 52 2 241 340 236 330 9.94e-18 84.7
Msa0650520 MtrunA17_Chr1g0188961 61.111 54 21 0 298 351 3 56 1.27e-17 76.6
Msa0650520 MtrunA17_Chr8g0387501 40.385 104 53 3 277 371 128 231 4.38e-17 80.5
Msa0650520 MtrunA17_Chr8g0387501 45.455 66 35 1 140 204 124 189 3.70e-12 66.2
Msa0650520 MtrunA17_Chr2g0319961 51.389 72 32 2 279 349 81 150 5.45e-17 80.1
Msa0650520 MtrunA17_Chr4g0024391 37.363 91 56 1 250 339 201 291 6.41e-17 82.0
Msa0650520 MtrunA17_Chr7g0248691 46.154 91 46 3 251 340 129 217 1.36e-16 80.1
Msa0650520 MtrunA17_Chr7g0248691 39.506 81 48 1 125 204 134 214 5.20e-12 66.2
Msa0650520 MtrunA17_Chr4g0001361 52.381 63 29 1 276 337 160 222 1.38e-16 79.7
Msa0650520 MtrunA17_Chr4g0001361 50.000 60 29 1 146 204 163 222 1.27e-11 65.1
Msa0650520 MtrunA17_Chr1g0202461 46.753 77 39 2 265 340 249 324 2.06e-16 80.1
Msa0650520 MtrunA17_Chr1g0202461 41.176 68 39 1 138 204 254 321 1.02e-11 65.9
Msa0650520 MtrunA17_Chr7g0228941 44.156 77 40 2 259 334 35 109 3.56e-16 74.3
Msa0650520 MtrunA17_Chr7g0228941 44.828 58 31 1 146 202 53 110 6.29e-11 59.7
Msa0650520 MtrunA17_Chr2g0289181 49.275 69 34 1 275 342 11 79 6.71e-16 76.6
Msa0650520 MtrunA17_Chr2g0289181 39.796 98 47 3 141 235 10 98 2.64e-11 63.2
Msa0650520 MtrunA17_Chr8g0348311 38.938 113 61 4 249 359 128 234 7.22e-16 78.2
Msa0650520 MtrunA17_Chr8g0348311 42.466 73 41 1 133 204 143 215 1.97e-12 67.8
Msa0650520 MtrunA17_Chr1g0188971 50.633 79 35 2 224 298 4 82 1.20e-15 71.6
Msa0650520 MtrunA17_Chr1g0150271 40.698 86 47 3 256 337 76 161 3.62e-15 74.7
Msa0650520 MtrunA17_Chr3g0139021 47.619 63 32 1 274 335 310 372 7.38e-14 72.4
Msa0650520 MtrunA17_Chr3g0126391 51.724 58 25 1 145 199 133 190 2.16e-13 70.9
Msa0650520 MtrunA17_Chr3g0126391 49.153 59 27 1 277 332 132 190 2.14e-11 64.7
Msa0650520 MtrunA17_Chr8g0347251 50.000 58 26 1 145 199 136 193 2.42e-13 70.5
Msa0650520 MtrunA17_Chr7g0275531 44.928 69 33 2 145 208 118 186 3.74e-13 69.7
Msa0650520 MtrunA17_Chr8g0387981 43.056 72 38 1 131 199 118 189 4.54e-13 69.7
Msa0650520 MtrunA17_Chr8g0387981 53.448 58 24 1 278 332 132 189 4.24e-12 67.0
Msa0650520 MtrunA17_Chr2g0315361 38.462 104 58 3 232 332 105 205 1.71e-12 67.8
Msa0650520 MtrunA17_Chr5g0419241 51.111 45 22 0 260 304 59 103 5.33e-12 62.0
Msa0650520 MtrunA17_Chr7g0244981 48.276 58 27 1 278 332 122 179 4.82e-11 63.2
Msa0650520 MtrunA17_Chr2g0315381 38.542 96 44 3 276 361 142 232 7.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650520 AT1G13960.1 44.082 490 143 14 12 384 37 512 1.50e-103 315
Msa0650520 AT2G03340.1 50.263 380 122 13 60 385 146 512 1.94e-102 312
Msa0650520 AT1G13960.2 49.459 370 115 11 73 384 4 359 2.32e-93 284
Msa0650520 AT3G01080.2 42.369 439 182 15 1 385 38 459 8.44e-85 265
Msa0650520 AT3G01080.1 41.627 418 177 14 1 385 38 421 5.02e-78 247
Msa0650520 AT5G07100.1 43.599 289 126 5 68 340 29 296 2.35e-72 228
Msa0650520 AT5G07100.1 48.750 80 40 1 129 208 219 297 2.45e-15 76.6
Msa0650520 AT5G07100.1 38.947 95 47 1 264 347 92 186 5.52e-14 72.4
Msa0650520 AT5G07100.2 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0650520 AT5G07100.2 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0650520 AT5G07100.2 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0650520 AT5G07100.4 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0650520 AT5G07100.4 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0650520 AT5G07100.4 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0650520 AT5G07100.5 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0650520 AT5G07100.5 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0650520 AT5G07100.5 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0650520 AT5G07100.3 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0650520 AT5G07100.3 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0650520 AT5G07100.3 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0650520 AT4G26640.1 44.891 274 102 6 116 343 104 374 3.40e-69 226
Msa0650520 AT4G26640.1 51.351 74 34 2 276 348 137 209 1.41e-14 75.5
Msa0650520 AT4G26640.5 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0650520 AT4G26640.5 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0650520 AT4G26640.6 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0650520 AT4G26640.6 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0650520 AT4G26640.4 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0650520 AT4G26640.4 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0650520 AT4G26640.3 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0650520 AT4G26640.3 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0650520 AT4G26640.7 44.891 274 102 6 116 343 136 406 4.17e-69 226
Msa0650520 AT4G26640.7 51.351 74 34 2 276 348 169 241 1.37e-14 75.5
Msa0650520 AT4G26640.2 44.891 274 102 6 116 343 176 446 1.25e-68 226
Msa0650520 AT4G26640.2 51.351 74 34 2 276 348 209 281 1.55e-14 75.5
Msa0650520 AT2G38470.1 49.225 258 82 7 145 354 184 440 8.79e-67 220
Msa0650520 AT2G30250.1 41.869 289 131 7 87 339 102 389 4.57e-61 202
Msa0650520 AT2G04880.2 43.320 247 95 6 141 345 107 350 6.28e-54 185
Msa0650520 AT2G04880.2 44.565 92 49 2 122 213 262 351 5.34e-15 76.6
Msa0650520 AT4G30935.1 37.013 308 142 9 76 340 95 393 1.31e-46 166
Msa0650520 AT4G30935.1 50.794 63 31 0 146 208 332 394 2.43e-12 68.6
Msa0650520 AT5G56270.1 73.469 98 26 0 243 340 452 549 3.04e-43 160
Msa0650520 AT5G56270.1 67.188 64 20 1 145 208 273 335 3.83e-22 99.0
Msa0650520 AT5G56270.1 61.667 60 22 1 278 337 273 331 3.21e-16 80.9
Msa0650520 AT5G56270.1 51.316 76 36 1 129 204 472 546 1.77e-14 75.5
Msa0650520 AT4G12020.11 38.662 269 115 7 73 298 400 661 2.79e-40 152
Msa0650520 AT4G12020.11 50.820 61 29 1 277 337 467 526 3.87e-12 68.6
Msa0650520 AT4G12020.10 38.662 269 115 7 73 298 400 661 3.29e-40 152
Msa0650520 AT4G12020.10 50.820 61 29 1 277 337 467 526 3.27e-12 68.9
Msa0650520 AT4G12020.3 38.662 269 115 7 73 298 400 661 3.29e-40 152
Msa0650520 AT4G12020.3 50.820 61 29 1 277 337 467 526 3.30e-12 68.9
Msa0650520 AT4G12020.1 38.662 269 115 7 73 298 400 661 3.45e-40 152
Msa0650520 AT4G12020.1 50.820 61 29 1 277 337 467 526 3.14e-12 68.9
Msa0650520 AT4G12020.9 38.662 269 115 7 73 298 400 661 3.45e-40 152
Msa0650520 AT4G12020.9 50.820 61 29 1 277 337 467 526 3.14e-12 68.9
Msa0650520 AT4G12020.7 38.662 269 115 7 73 298 400 661 3.51e-40 152
Msa0650520 AT4G12020.7 50.820 61 29 1 277 337 467 526 3.22e-12 68.9
Msa0650520 AT4G12020.6 38.662 269 115 7 73 298 400 661 3.54e-40 152
Msa0650520 AT4G12020.6 50.820 61 29 1 277 337 467 526 3.10e-12 68.9
Msa0650520 AT4G12020.8 38.662 269 115 7 73 298 400 661 3.54e-40 152
Msa0650520 AT4G12020.8 50.820 61 29 1 277 337 467 526 3.10e-12 68.9
Msa0650520 AT4G12020.2 38.662 269 115 7 73 298 400 661 3.66e-40 152
Msa0650520 AT4G12020.2 50.820 61 29 1 277 337 467 526 3.49e-12 68.9
Msa0650520 AT4G12020.5 38.662 269 115 7 73 298 333 594 4.06e-40 152
Msa0650520 AT4G12020.5 50.820 61 29 1 277 337 400 459 3.59e-12 68.9
Msa0650520 AT4G12020.4 38.662 269 115 7 73 298 400 661 4.25e-40 152
Msa0650520 AT4G12020.4 50.820 61 29 1 277 337 467 526 3.58e-12 68.9
Msa0650520 AT4G26440.1 67.647 102 33 0 243 344 337 438 2.03e-39 148
Msa0650520 AT4G26440.1 37.725 167 84 5 61 215 89 247 9.74e-24 103
Msa0650520 AT4G26440.1 56.667 60 25 1 278 337 178 236 9.53e-15 76.3
Msa0650520 AT4G26440.1 50.685 73 33 1 132 204 362 431 7.97e-14 73.6
Msa0650520 AT2G04880.1 53.509 114 49 3 234 345 263 374 4.30e-32 126
Msa0650520 AT2G04880.1 45.055 91 49 1 141 231 107 196 1.64e-17 84.3
Msa0650520 AT2G04880.1 54.688 64 28 1 276 339 109 171 1.09e-15 79.0
Msa0650520 AT2G04880.1 44.565 92 49 2 122 213 286 375 5.38e-15 76.6
Msa0650520 AT3G01080.3 39.407 236 103 10 1 205 38 264 7.03e-32 123
Msa0650520 AT3G01080.3 56.667 60 25 1 278 337 205 263 1.11e-14 74.7
Msa0650520 AT4G18170.1 64.474 76 27 0 263 338 157 232 1.82e-29 116
Msa0650520 AT4G18170.1 44.318 88 46 2 122 209 150 234 6.69e-14 72.4
Msa0650520 AT1G29860.1 64.000 75 27 0 265 339 123 197 2.69e-29 115
Msa0650520 AT1G29860.1 52.308 65 29 1 145 209 136 198 6.38e-14 72.0
Msa0650520 AT5G46350.1 61.039 77 30 0 264 340 169 245 2.23e-28 113
Msa0650520 AT5G46350.1 51.667 60 29 0 145 204 183 242 4.73e-13 70.1
Msa0650520 AT2G44745.1 56.471 85 36 1 259 343 126 209 4.72e-28 110
Msa0650520 AT2G44745.1 51.429 70 31 1 132 201 135 201 1.38e-14 72.8
Msa0650520 AT2G37260.3 48.092 131 55 2 222 350 222 341 5.19e-28 113
Msa0650520 AT2G37260.3 68.750 64 19 1 141 204 81 143 3.01e-23 99.8
Msa0650520 AT2G37260.3 57.377 61 25 1 279 339 86 145 1.20e-14 75.1
Msa0650520 AT2G37260.3 49.123 57 29 0 145 201 269 325 2.99e-11 64.7
Msa0650520 AT2G37260.2 48.092 131 55 2 222 350 220 339 5.33e-28 113
Msa0650520 AT2G37260.2 68.750 64 19 1 141 204 79 141 2.99e-23 99.8
Msa0650520 AT2G37260.2 57.377 61 25 1 279 339 84 143 1.22e-14 74.7
Msa0650520 AT2G37260.2 49.123 57 29 0 145 201 267 323 2.96e-11 64.7
Msa0650520 AT2G37260.1 48.092 131 55 2 222 350 302 421 1.10e-27 113
Msa0650520 AT2G37260.1 68.750 64 19 1 141 204 161 223 4.86e-23 100
Msa0650520 AT2G37260.1 57.377 61 25 1 279 339 166 225 1.45e-14 75.1
Msa0650520 AT2G37260.1 49.123 57 29 0 145 201 349 405 3.38e-11 65.1
Msa0650520 AT5G13080.1 52.381 84 40 0 265 348 54 137 2.48e-27 105
Msa0650520 AT5G13080.1 51.429 70 31 1 132 201 57 123 7.44e-16 74.7
Msa0650520 AT1G64000.1 60.526 76 30 0 259 334 95 170 3.33e-27 107
Msa0650520 AT1G64000.1 52.459 61 29 0 141 201 110 170 6.42e-14 70.5
Msa0650520 AT5G49520.1 64.384 73 26 0 265 337 208 280 4.66e-27 111
Msa0650520 AT5G49520.1 46.053 76 40 1 129 204 206 280 5.32e-15 76.3
Msa0650520 AT1G69310.4 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa0650520 AT1G69310.4 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa0650520 AT1G69310.2 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa0650520 AT1G69310.2 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa0650520 AT1G69310.1 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa0650520 AT1G69310.1 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa0650520 AT4G39410.1 59.211 76 31 0 259 334 204 279 6.49e-27 109
Msa0650520 AT4G39410.1 50.000 70 32 1 145 214 223 289 1.36e-14 74.3
Msa0650520 AT2G47260.1 63.014 73 27 0 265 337 161 233 8.27e-27 109
Msa0650520 AT2G47260.1 47.500 80 41 1 129 208 159 237 2.17e-15 77.0
Msa0650520 AT5G41570.1 60.526 76 30 0 259 334 79 154 1.96e-26 104
Msa0650520 AT5G41570.1 52.459 61 29 0 141 201 94 154 1.49e-13 68.9
Msa0650520 AT3G01970.1 54.762 84 38 0 265 348 52 135 5.29e-26 102
Msa0650520 AT3G01970.1 50.000 76 35 1 132 207 55 127 2.86e-15 72.8
Msa0650520 AT2G46130.1 56.579 76 33 0 259 334 11 86 2.69e-25 99.4
Msa0650520 AT2G46130.1 50.877 57 28 0 145 201 30 86 3.37e-13 65.9
Msa0650520 AT1G55600.1 61.728 81 31 0 259 339 288 368 5.39e-25 106
Msa0650520 AT1G55600.1 46.667 75 39 1 130 204 293 366 6.60e-12 67.4
Msa0650520 AT4G04450.2 44.068 118 60 3 249 363 169 283 1.17e-24 105
Msa0650520 AT5G26170.1 55.714 70 31 0 265 334 100 169 1.73e-24 99.4
Msa0650520 AT5G26170.1 50.877 57 28 0 145 201 113 169 1.23e-12 66.2
Msa0650520 AT4G04450.1 44.068 118 60 3 249 363 263 377 3.39e-24 104
Msa0650520 AT3G62340.1 43.220 118 61 1 264 375 104 221 4.76e-24 100
Msa0650520 AT3G62340.1 55.000 60 27 0 145 204 118 177 1.37e-14 73.9
Msa0650520 AT2G21900.1 50.000 76 35 1 267 339 95 170 1.23e-22 95.1
Msa0650520 AT2G21900.1 45.205 73 40 0 132 204 96 168 6.51e-15 73.6
Msa0650520 AT5G15130.2 46.809 94 46 2 261 353 168 258 3.23e-22 98.6
Msa0650520 AT5G15130.1 46.809 94 46 2 261 353 210 300 3.48e-22 98.6
Msa0650520 AT1G69310.3 55.128 78 31 1 257 334 126 199 4.06e-22 95.5
Msa0650520 AT1G69310.3 50.000 58 25 1 145 202 147 200 1.75e-11 64.7
Msa0650520 AT4G22070.4 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0650520 AT4G22070.3 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0650520 AT4G22070.2 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0650520 AT4G22070.1 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0650520 AT1G68150.1 45.000 100 54 1 263 361 220 319 7.52e-22 96.3
Msa0650520 AT1G62300.1 50.633 79 38 1 260 337 294 372 2.79e-21 95.9
Msa0650520 AT5G64810.1 50.704 71 35 0 265 335 97 167 3.36e-21 90.9
Msa0650520 AT5G64810.1 48.276 58 30 0 145 202 110 167 9.20e-12 64.3
Msa0650520 AT2G46130.2 52.632 76 32 1 259 334 11 82 1.38e-20 86.3
Msa0650520 AT4G31550.2 46.535 101 42 3 243 342 221 310 7.15e-20 89.7
Msa0650520 AT4G31550.1 50.588 85 38 2 259 342 230 311 8.37e-20 89.7
Msa0650520 AT4G01720.1 52.632 76 35 1 263 337 224 299 8.46e-20 91.3
Msa0650520 AT1G18860.1 46.988 83 43 1 256 337 217 299 2.34e-19 90.1
Msa0650520 AT2G34830.1 41.584 101 52 2 241 340 184 278 9.48e-19 87.8
Msa0650520 AT4G23550.1 44.944 89 45 2 265 352 127 212 1.02e-18 86.3
Msa0650520 AT4G23550.1 48.333 60 30 1 146 204 141 200 2.33e-12 67.8
Msa0650520 AT2G34830.2 41.584 101 52 2 241 340 193 287 1.02e-18 87.8
Msa0650520 AT2G30590.1 48.718 78 39 1 258 334 293 370 1.40e-18 87.0
Msa0650520 AT2G25000.2 51.429 70 32 2 272 339 96 165 1.50e-18 84.3
Msa0650520 AT2G25000.2 47.619 63 32 1 146 207 104 166 1.15e-11 64.7
Msa0650520 AT2G25000.4 51.429 70 32 2 272 339 96 165 1.50e-18 84.3
Msa0650520 AT2G25000.4 47.619 63 32 1 146 207 104 166 1.15e-11 64.7
Msa0650520 AT4G31800.2 52.113 71 32 2 271 339 103 173 1.51e-18 84.7
Msa0650520 AT1G30650.1 41.584 101 52 2 241 340 186 280 2.45e-18 86.7
Msa0650520 AT4G31800.1 52.113 71 32 2 271 339 168 238 2.52e-18 85.1
Msa0650520 AT2G25000.3 51.429 70 32 2 272 339 118 187 2.90e-18 84.0
Msa0650520 AT2G25000.3 47.619 63 32 1 146 207 126 188 1.47e-11 64.7
Msa0650520 AT2G25000.1 51.429 70 32 2 272 339 139 208 4.36e-18 84.0
Msa0650520 AT2G25000.1 47.619 63 32 1 146 207 147 209 2.03e-11 64.3
Msa0650520 AT2G23320.1 48.101 79 37 2 259 336 224 299 4.93e-18 84.3
Msa0650520 AT1G80840.1 51.562 64 30 1 276 338 144 207 6.88e-18 84.0
Msa0650520 AT1G80840.1 49.275 69 32 2 146 213 147 213 9.29e-13 68.9
Msa0650520 AT1G29280.1 41.584 101 52 2 238 337 40 134 8.25e-18 82.8
Msa0650520 AT2G24570.1 50.649 77 34 2 259 334 227 300 2.38e-17 82.4
Msa0650520 AT3G58710.2 41.284 109 55 3 243 348 41 143 2.40e-17 81.6
Msa0650520 AT5G28650.1 40.777 103 49 3 243 344 238 329 3.41e-17 82.4
Msa0650520 AT4G01250.1 55.556 63 27 1 276 337 126 188 3.78e-17 81.6
Msa0650520 AT4G01250.1 42.466 73 41 1 133 204 116 188 4.47e-12 66.6
Msa0650520 AT4G24240.1 42.105 95 43 3 243 336 257 340 4.41e-17 82.0
Msa0650520 AT3G58710.1 38.406 138 69 5 224 348 10 144 4.47e-17 80.9
Msa0650520 AT3G04670.1 40.777 103 49 3 243 344 238 329 6.02e-17 81.6
Msa0650520 AT5G43290.1 55.932 59 26 0 276 334 112 170 1.18e-16 79.7
Msa0650520 AT5G43290.1 40.625 96 47 1 145 230 114 209 7.79e-14 71.6
Msa0650520 AT5G52830.1 49.254 67 33 1 275 340 162 228 2.20e-15 77.0
Msa0650520 AT5G52830.1 44.000 75 39 2 133 204 151 225 4.75e-13 70.1
Msa0650520 AT1G69810.2 40.000 95 53 3 261 353 128 220 2.33e-15 77.0
Msa0650520 AT1G69810.1 40.000 95 53 3 261 353 186 278 3.34e-15 77.0
Msa0650520 AT5G45050.2 52.381 63 29 1 279 340 1153 1215 3.60e-15 78.2
Msa0650520 AT5G45050.4 52.381 63 29 1 279 340 1042 1104 3.76e-15 77.8
Msa0650520 AT5G45050.1 52.381 63 29 1 279 340 1181 1243 3.82e-15 77.8
Msa0650520 AT3G56400.1 33.094 139 85 3 215 345 56 194 2.26e-14 73.6
Msa0650520 AT4G23810.1 38.710 93 47 2 110 199 130 215 6.84e-14 72.4
Msa0650520 AT1G66560.1 50.000 58 26 1 278 332 103 160 3.81e-13 69.3
Msa0650520 AT5G45260.1 40.659 91 48 3 128 214 1192 1280 6.12e-13 71.2
Msa0650520 AT4G11070.2 33.913 115 64 3 90 199 59 166 2.26e-12 67.4
Msa0650520 AT5G24110.1 46.032 63 31 1 140 199 108 170 2.55e-12 67.4
Msa0650520 AT4G11070.1 33.913 115 64 3 90 199 91 198 3.15e-12 67.4
Msa0650520 AT2G46400.1 37.634 93 52 2 256 342 82 174 1.97e-11 64.7
Msa0650520 AT2G46400.1 44.828 58 29 1 145 199 104 161 8.21e-11 62.8
Msa0650520 AT2G40740.1 43.750 64 33 1 139 199 167 230 3.22e-11 63.9
Msa0650520 AT2G40740.3 43.750 64 33 1 139 199 176 239 4.64e-11 63.5
Msa0650520 AT1G66550.2 45.614 57 28 1 279 332 104 160 8.93e-11 62.4
Msa0650520 AT1G66550.1 45.614 57 28 1 279 332 109 165 9.44e-11 62.4

Find 121 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTCACAAGTAATCTTTA+AGG 0.158601 4_3:+57608550 Msa0650520:three_prime_UTR
ATACCAGAAATTGGACTTAT+AGG 0.211823 4_3:-57608621 None:intergenic
ATATGTAATCACCTTGGATA+TGG 0.279577 4_3:-57607767 None:intergenic
TATGTTGTCAATACAGCTTT+AGG 0.290861 4_3:-57608305 None:intergenic
GACATTTAATATGTAATTGA+TGG 0.297151 4_3:+57603720 Msa0650520:five_prime_UTR
AGAAAATGTATTGGTCTCTT+AGG 0.303525 4_3:+57608757 Msa0650520:three_prime_UTR
AGGCCTATAAGTCCAATTTC+TGG 0.306456 4_3:+57608618 Msa0650520:three_prime_UTR
TGGTGGCATGTTTGGCTTCA+TGG 0.315986 4_3:+57608858 Msa0650520:three_prime_UTR
GTAACTGCAATTATTTATAA+AGG 0.324911 4_3:+57607162 Msa0650520:CDS
GGAGGAGGAGGAAGAGGTGG+TGG 0.331770 4_3:+57604215 Msa0650520:CDS
GTGGAGCATGGAGGAGGAGG+AGG 0.338095 4_3:+57604197 Msa0650520:CDS
GAAGAATACTCAACAGAGTT+TGG 0.345418 4_3:-57606949 None:intergenic
ATACCACTTGGTGGGGAGTT+TGG 0.346229 4_3:-57608791 None:intergenic
TATGTGAAAGGGATGGATTC+AGG 0.348558 4_3:-57607637 None:intergenic
GAGCATGGAGGAGGAGGAGG+AGG 0.360875 4_3:+57604200 Msa0650520:CDS
ACTTTGCTTTCCAACTTGTT+TGG 0.361900 4_3:+57604119 Msa0650520:CDS
AAGGGATGGATTCAGGAGTT+TGG 0.372111 4_3:-57607630 None:intergenic
GGAAATGGAGAGTGGCCTTC+AGG 0.377893 4_3:+57604071 Msa0650520:CDS
ATGTTATTGAATGTTATTGA+TGG 0.379882 4_3:-57606910 None:intergenic
GGTACTGATGATGCAGAAAA+TGG 0.388413 4_3:-57606862 None:intergenic
GGATATAGATGGCGCAAATA+CGG 0.389091 4_3:+57607722 Msa0650520:CDS
CGATGACTGCAAGTCTTTCT+CGG 0.393658 4_3:+57604148 Msa0650520:CDS
GGATACAACTGGAGGAAGTA+TGG 0.398456 4_3:+57607033 Msa0650520:CDS
TGAATGGTTGGAGGTGGAAA+TGG 0.401101 4_3:+57604056 Msa0650520:exon
CAGAAAATGGATGTTCAGAT+TGG 0.408171 4_3:-57606849 None:intergenic
TTCTTCTGTGAATGTTGATA+AGG 0.409082 4_3:+57606999 Msa0650520:CDS
AACAAGTGATGTGGATCTCT+TGG 0.410616 4_3:+57607694 Msa0650520:CDS
AAGTTATATACGTGAAAGAT+AGG 0.420840 4_3:+57603831 Msa0650520:five_prime_UTR
GATGTGGAGCATGGAGGAGG+AGG 0.427310 4_3:+57604194 Msa0650520:CDS
TCAATAAAGTTGTGAATGGT+TGG 0.429419 4_3:+57604044 Msa0650520:exon
ATAATGAATGGTGGCATGTT+TGG 0.430028 4_3:+57608850 Msa0650520:three_prime_UTR
GGAGGAGGAAGAGGTGGTGG+TGG 0.430075 4_3:+57604218 Msa0650520:CDS
GGAGGATTATGAGTGAATTC+AGG 0.431837 4_3:+57608879 Msa0650520:three_prime_UTR
ATAGGCCTTGGTCAAAACTT+TGG 0.438403 4_3:-57608603 None:intergenic
CAACTCCGGGTTGCAATGTT+CGG 0.442776 4_3:+57608255 Msa0650520:CDS
GAAAGATAGGAGAAGATTGC+AGG 0.443121 4_3:+57603844 Msa0650520:five_prime_UTR
CGCTGGCGACACGTTGGATG+TGG 0.455395 4_3:+57604178 Msa0650520:CDS
TCTTTCTCGGAGCTCCTCGC+TGG 0.459203 4_3:+57604161 Msa0650520:CDS
GAAATTGGACTTATAGGCCT+TGG 0.463448 4_3:-57608615 None:intergenic
TTGTCGTTTGTGAGCTTGCT+AGG 0.468818 4_3:-57607210 None:intergenic
GATATAGATGGCGCAAATAC+GGG 0.472441 4_3:+57607723 Msa0650520:CDS
GGAGAGTGGCCTTCAGGTGG+GGG 0.472624 4_3:+57604077 Msa0650520:CDS
TTGTGAGCTTGCTAGGACGT+GGG 0.474026 4_3:-57607203 None:intergenic
GAAAGAGTGAGAGTGTATCT+AGG 0.486124 4_3:+57608826 Msa0650520:three_prime_UTR
CATGTTCACTTCTCCACCTC+AGG 0.493399 4_3:+57604256 Msa0650520:CDS
TTTGTGAGCTTGCTAGGACG+TGG 0.506084 4_3:-57607204 None:intergenic
TATGTAATCACCTTGGATAT+GGG 0.509899 4_3:-57607766 None:intergenic
CCTTACCTTCTCTTGAGACC+AGG 0.513180 4_3:-57607312 None:intergenic
ATAATCAATAAAGTTGTGAA+TGG 0.514219 4_3:+57604040 Msa0650520:exon
GTTGAACGCGATCCTGTAGA+TGG 0.515499 4_3:+57607135 Msa0650520:CDS
ATGGAGAGTGGCCTTCAGGT+GGG 0.518947 4_3:+57604075 Msa0650520:CDS
CTTAGATGTGCCACTGCTGA+AGG 0.520698 4_3:-57608458 None:intergenic
GTGCACTTGTAATAACTTCG+AGG 0.523109 4_3:-57607084 None:intergenic
TCTTGGAGGATGGATATAGA+TGG 0.523927 4_3:+57607711 Msa0650520:CDS
ATGCACTATTATTGCTAGCA+AGG 0.524276 4_3:-57608379 None:intergenic
GCTGTATTGACAACATATGA+AGG 0.524886 4_3:+57608311 Msa0650520:CDS
ACAAGTGACAGTGAGGAAGA+AGG 0.529857 4_3:+57607261 Msa0650520:CDS
GAAGATTGCAGGCATAGCAT+AGG 0.533234 4_3:+57603855 Msa0650520:five_prime_UTR
CTATTACAAATGCACAACTC+CGG 0.535365 4_3:+57608241 Msa0650520:CDS
TATTGGTCTCTTAGGAGTAA+TGG 0.535384 4_3:+57608765 Msa0650520:three_prime_UTR
TGACTGTTAGTCTTAGCTGC+TGG 0.535682 4_3:-57608353 None:intergenic
AGCTAAGCATACCACTTGGT+GGG 0.536456 4_3:-57608799 None:intergenic
GAGAGTGGCCTTCAGGTGGG+GGG 0.537568 4_3:+57604078 Msa0650520:CDS
TTGAGACAGTCCTATGTGAA+AGG 0.538082 4_3:-57607649 None:intergenic
TATTACAAATGCACAACTCC+GGG 0.539125 4_3:+57608242 Msa0650520:CDS
GAAAGCAAAGTCATGGGACC+TGG 0.539402 4_3:-57604107 None:intergenic
CAAGTTGGAAAGCAAAGTCA+TGG 0.540093 4_3:-57604114 None:intergenic
CTAATGACGACGGATACAAC+TGG 0.541447 4_3:+57607022 Msa0650520:CDS
AATGGAGAGTGGCCTTCAGG+TGG 0.546609 4_3:+57604074 Msa0650520:CDS
ATCGTTGTCACCAAACAAGT+TGG 0.548706 4_3:-57604129 None:intergenic
GCAGTTACATGACCATCTAC+AGG 0.555080 4_3:-57607147 None:intergenic
TGAGACAGTCCTATGTGAAA+GGG 0.555370 4_3:-57607648 None:intergenic
TGGAGAGTGGCCTTCAGGTG+GGG 0.556179 4_3:+57604076 Msa0650520:CDS
TTGGATGTGGAGCATGGAGG+AGG 0.558763 4_3:+57604191 Msa0650520:CDS
TTGTGTCAATGAGGTACTGT+TGG 0.566128 4_3:-57606884 None:intergenic
AGATGCAGAATTTCAACAGA+AGG 0.567059 4_3:+57608423 Msa0650520:CDS
TGGTGGTGGCTTGTCACCGT+TGG 0.569092 4_3:+57604232 Msa0650520:CDS
AAGCTAAGCATACCACTTGG+TGG 0.571427 4_3:-57608800 None:intergenic
GATGCAGAATTTCAACAGAA+GGG 0.571983 4_3:+57608424 Msa0650520:CDS
AGTGGCACATCTAAGATTGA+AGG 0.580831 4_3:+57608466 Msa0650520:CDS
GCATGTTGAGAGGGTTTCAA+CGG 0.585716 4_3:+57608280 Msa0650520:CDS
ATGAACCTGGTCTCAAGAGA+AGG 0.587168 4_3:+57607307 Msa0650520:CDS
GTGTATCTAGGTATAATGAA+TGG 0.587900 4_3:+57608838 Msa0650520:three_prime_UTR
TGTTCGGAAGCATGTTGAGA+GGG 0.594276 4_3:+57608271 Msa0650520:CDS
GACACGTTGGATGTGGAGCA+TGG 0.595589 4_3:+57604185 Msa0650520:CDS
GAAGTATATATTACCTGAGG+TGG 0.596349 4_3:-57604269 None:intergenic
TTGGATTTGAGCATTTGAGT+AGG 0.596492 4_3:-57606830 None:intergenic
AAGTTGTGAATGGTTGGAGG+TGG 0.597067 4_3:+57604050 Msa0650520:exon
AAGTGATGTGGATCTCTTGG+AGG 0.597649 4_3:+57607697 Msa0650520:CDS
GCTAAGCATACCACTTGGTG+GGG 0.608157 4_3:-57608798 None:intergenic
TCTTTCATCTATCTAAAGCG+TGG 0.612176 4_3:+57603892 Msa0650520:five_prime_UTR
ACTGAAGTAGATTATGAACC+TGG 0.614019 4_3:+57607294 Msa0650520:CDS
ATGTTCGGAAGCATGTTGAG+AGG 0.614164 4_3:+57608270 Msa0650520:CDS
CTGAGGTGGAGAAGTGAACA+TGG 0.615388 4_3:-57604255 None:intergenic
GCTCCTCGCTGGCGACACGT+TGG 0.617837 4_3:+57604172 Msa0650520:CDS
ACAGTCCTATGTGAAAGGGA+TGG 0.625637 4_3:-57607644 None:intergenic
TACGGGCAGAAAGTTGTCAA+AGG 0.626111 4_3:+57607740 Msa0650520:CDS
TCAAAGGCAACCCATATCCA+AGG 0.626448 4_3:+57607756 Msa0650520:CDS
TATGGACAGAAACAAGTGAA+AGG 0.627695 4_3:+57607051 Msa0650520:CDS
GATGTGGATCTCTTGGAGGA+TGG 0.628338 4_3:+57607701 Msa0650520:CDS
AAGTTGGAAAGCAAAGTCAT+GGG 0.630381 4_3:-57604113 None:intergenic
TCAACATCAGCCTTCAGCAG+TGG 0.630519 4_3:+57608448 Msa0650520:CDS
ATCAAGCTAAGCATACCACT+TGG 0.631131 4_3:-57608803 None:intergenic
TGAATCCATCCCTTTCACAT+AGG 0.631552 4_3:+57607639 Msa0650520:CDS
ATGCAGAATTTCAACAGAAG+GGG 0.631709 4_3:+57608425 Msa0650520:CDS
TGCTTCCGAACATTGCAACC+CGG 0.632799 4_3:-57608260 None:intergenic
ATAAAGTTGTGAATGGTTGG+AGG 0.633267 4_3:+57604047 Msa0650520:exon
TGTGTCAATGAGGTACTGTT+GGG 0.640910 4_3:-57606883 None:intergenic
TTATAGATCATATGTGTGAG+TGG 0.642184 4_3:+57608657 Msa0650520:three_prime_UTR
TATCTAGGTATAATGAATGG+TGG 0.644969 4_3:+57608841 Msa0650520:three_prime_UTR
GTCAGGAACAAGTGACAGTG+AGG 0.650399 4_3:+57607254 Msa0650520:CDS
TGATGGAACTTGTGTCAATG+AGG 0.653592 4_3:-57606893 None:intergenic
GGAGAAGTGAACATGGCCAA+CGG 0.663309 4_3:-57604248 None:intergenic
TGTGCAAACAACAAGTGATG+TGG 0.666996 4_3:+57607685 Msa0650520:CDS
GTTGATAAGGCTAATGACGA+CGG 0.676828 4_3:+57607012 Msa0650520:CDS
CATCCAACGTGTCGCCAGCG+AGG 0.677352 4_3:-57604175 None:intergenic
TTGGAGGTGGAAATGGAGAG+TGG 0.686540 4_3:+57604063 Msa0650520:CDS
TGGCATGTTTGGCTTCATGG+AGG 0.697539 4_3:+57608861 Msa0650520:three_prime_UTR
TCACCAAACTCCCCACCAAG+TGG 0.700564 4_3:+57608788 Msa0650520:three_prime_UTR
ATGACGACGGATACAACTGG+AGG 0.731932 4_3:+57607025 Msa0650520:CDS
ACGTTGGATGTGGAGCATGG+AGG 0.754990 4_3:+57604188 Msa0650520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTAAAAAAAAACATA+TGG + chr4_3:57606283-57606302 Msa0650520:intron 10.0%
!!! TTTTAAAAAAATTACACTAA+CGG - chr4_3:57607404-57607423 None:intergenic 10.0%
!!! ATCTTTATAGTTTTATTTTT+TGG + chr4_3:57608734-57608753 Msa0650520:three_prime_UTR 10.0%
!! TATATAAATTAGCATATAGA+AGG - chr4_3:57604873-57604892 None:intergenic 15.0%
!! AATAATGATGAAAATGATAA+TGG + chr4_3:57604998-57605017 Msa0650520:intron 15.0%
!!! TACTCAATTAAAAAGTATAT+TGG + chr4_3:57606019-57606038 Msa0650520:intron 15.0%
!!! ATATGTTTATTCCTTTTTTT+AGG - chr4_3:57606257-57606276 None:intergenic 15.0%
!!! AAAAAACATATGGATTTTAA+TGG + chr4_3:57606293-57606312 Msa0650520:intron 15.0%
!!! AAATTTTGTCTATAAAGTAT+CGG + chr4_3:57606352-57606371 Msa0650520:intron 15.0%
!!! AATACTTAAGTAATTCTTTT+TGG - chr4_3:57606421-57606440 None:intergenic 15.0%
!!! TTTCATATTTTATACAAGAT+TGG + chr4_3:57608515-57608534 Msa0650520:three_prime_UTR 15.0%
!! GACATTTAATATGTAATTGA+TGG + chr4_3:57603720-57603739 Msa0650520:five_prime_UTR 20.0%
!!! GACTTTTTTTTGTACAAATT+AGG + chr4_3:57603762-57603781 Msa0650520:five_prime_UTR 20.0%
!!! ACTTTTAAGACTTATAGATA+AGG + chr4_3:57603787-57603806 Msa0650520:five_prime_UTR 20.0%
!!! CTTTTAAGACTTATAGATAA+GGG + chr4_3:57603788-57603807 Msa0650520:five_prime_UTR 20.0%
!!! TTTTAAGACTTATAGATAAG+GGG + chr4_3:57603789-57603808 Msa0650520:five_prime_UTR 20.0%
!! ATAATCAATAAAGTTGTGAA+TGG + chr4_3:57604040-57604059 Msa0650520:exon 20.0%
!! TCAATTATCATAAATTTGCA+AGG - chr4_3:57605708-57605727 None:intergenic 20.0%
!!! GTAGTTTTGATTAAAATTCT+TGG + chr4_3:57605076-57605095 Msa0650520:intron 20.0%
!!! AAGTATTTTCTTATGTGTAT+TGG + chr4_3:57605135-57605154 Msa0650520:intron 20.0%
!! AAGTTTATAATCTATGACTA+AGG + chr4_3:57605448-57605467 Msa0650520:intron 20.0%
!! CATATAAATTAGCATATAGA+AGG + chr4_3:57605665-57605684 Msa0650520:intron 20.0%
!! TCAATTATCATAAATTTGCA+AGG + chr4_3:57605708-57605727 Msa0650520:intron 20.0%
!!! CAATTAAAAAGTATATTGGT+TGG + chr4_3:57606023-57606042 Msa0650520:intron 20.0%
!! GGATAAATTCAAAAATTCTT+CGG - chr4_3:57606400-57606419 None:intergenic 20.0%
!! AAATTCAACCACTATTTATT+TGG + chr4_3:57606727-57606746 Msa0650520:intron 20.0%
!! ATGTTATTGAATGTTATTGA+TGG - chr4_3:57606913-57606932 None:intergenic 20.0%
!! GTAACTGCAATTATTTATAA+AGG + chr4_3:57607162-57607181 Msa0650520:CDS 20.0%
!! ATACATCTACTTAATTATGT+AGG + chr4_3:57607790-57607809 Msa0650520:intron 20.0%
!! TACATCTACTTAATTATGTA+GGG + chr4_3:57607791-57607810 Msa0650520:intron 20.0%
!! AAATTAGTGATACAACTTTA+GGG - chr4_3:57607831-57607850 None:intergenic 20.0%
!! TAAATTAGTGATACAACTTT+AGG - chr4_3:57607832-57607851 None:intergenic 20.0%
!!! ATTTTTTGGAGAAAATGTAT+TGG + chr4_3:57608748-57608767 Msa0650520:three_prime_UTR 20.0%
! AAGTTATATACGTGAAAGAT+AGG + chr4_3:57603831-57603850 Msa0650520:five_prime_UTR 25.0%
!! TTTAATTTCATCGAGCTTAA+GGG - chr4_3:57604375-57604394 None:intergenic 25.0%
!!! TTTTAATTTCATCGAGCTTA+AGG - chr4_3:57604376-57604395 None:intergenic 25.0%
! ACATCTCATTCTCTAAATAT+AGG + chr4_3:57604402-57604421 Msa0650520:intron 25.0%
!!! TACAACTACGAATTTTTTTC+AGG - chr4_3:57604490-57604509 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG - chr4_3:57605920-57605939 None:intergenic 25.0%
! ACTATATAATGTGAAGTTGA+TGG + chr4_3:57604924-57604943 Msa0650520:intron 25.0%
! ATTATTGATAAACTACAAGG+GGG - chr4_3:57605256-57605275 None:intergenic 25.0%
! CATTATTGATAAACTACAAG+GGG - chr4_3:57605257-57605276 None:intergenic 25.0%
! CCATTATTGATAAACTACAA+GGG - chr4_3:57605258-57605277 None:intergenic 25.0%
! ACCATTATTGATAAACTACA+AGG - chr4_3:57605259-57605278 None:intergenic 25.0%
! ACCATTATTGATAAACTACA+GGG - chr4_3:57605259-57605278 None:intergenic 25.0%
! TATGCTTATACTGTCATTAT+AGG - chr4_3:57605527-57605546 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG + chr4_3:57605920-57605939 Msa0650520:intron 25.0%
! AAAATGAGTGATATCTTTCT+TGG - chr4_3:57606068-57606087 None:intergenic 25.0%
! ATAAACGTTCTCCTAAAAAA+AGG + chr4_3:57606243-57606262 Msa0650520:intron 25.0%
! CTACTATATATGCTTCAATT+AGG + chr4_3:57606561-57606580 Msa0650520:intron 25.0%
! TATATGCTTCAATTAGGATA+AGG + chr4_3:57606567-57606586 Msa0650520:intron 25.0%
! TGGAATTGGAATATTAAACA+AGG + chr4_3:57606635-57606654 Msa0650520:intron 25.0%
! TAATTTAATCCAAACTTCCA+AGG - chr4_3:57606690-57606709 None:intergenic 25.0%
! CTTAAAAGTCATACAAATGA+TGG - chr4_3:57607445-57607464 None:intergenic 25.0%
!! CATCATTTGTATGACTTTTA+AGG + chr4_3:57607443-57607462 Msa0650520:intron 25.0%
! AATCATAATTCATAGCTGTT+TGG - chr4_3:57607501-57607520 None:intergenic 25.0%
! TGATTGATCGACAATATAAA+AGG + chr4_3:57607516-57607535 Msa0650520:intron 25.0%
! ATGTATATATGTAATCACCT+TGG - chr4_3:57607776-57607795 None:intergenic 25.0%
! GACTAAACTCTATAATTTCA+AGG + chr4_3:57608006-57608025 Msa0650520:intron 25.0%
TCAATAAAGTTGTGAATGGT+TGG + chr4_3:57604044-57604063 Msa0650520:exon 30.0%
GTTGAAGTATATATTACCTG+AGG - chr4_3:57604275-57604294 None:intergenic 30.0%
TTAATTTCATCGAGCTTAAG+GGG - chr4_3:57604374-57604393 None:intergenic 30.0%
TTGATATTTCGTTAACTGCA+GGG - chr4_3:57605951-57605970 None:intergenic 30.0%
ATTGATATTTCGTTAACTGC+AGG - chr4_3:57605950-57605969 None:intergenic 30.0%
ACTAACGTTTATCAATTTCG+GGG - chr4_3:57605922-57605941 None:intergenic 30.0%
GACTAACGTTTATCAATTTC+GGG - chr4_3:57605921-57605940 None:intergenic 30.0%
AGAAGGAATAAGATTCATAG+TGG - chr4_3:57605682-57605701 None:intergenic 30.0%
GATAGTATTGTTGTGTATGT+TGG + chr4_3:57605054-57605073 Msa0650520:intron 30.0%
GTATTGGAAACAAATGTAAG+AGG + chr4_3:57605151-57605170 Msa0650520:intron 30.0%
CCCTTGTAGTTTATCAATAA+TGG + chr4_3:57605255-57605274 Msa0650520:intron 30.0%
CATTATTGATAAACTACAGG+GGG - chr4_3:57605288-57605307 None:intergenic 30.0%
CCATTATTGATAAACTACAG+GGG - chr4_3:57605289-57605308 None:intergenic 30.0%
GACCATTATTGATAAACTAC+AGG - chr4_3:57605260-57605279 None:intergenic 30.0%
CAAATAATTCAAATACAGGG+GGG - chr4_3:57605319-57605338 None:intergenic 30.0%
CCAAATAATTCAAATACAGG+GGG - chr4_3:57605320-57605339 None:intergenic 30.0%
CCCAAATAATTCAAATACAG+GGG - chr4_3:57605321-57605340 None:intergenic 30.0%
CCCCTGTATTTGAATTATTT+GGG + chr4_3:57605318-57605337 Msa0650520:intron 30.0%
GCCCAAATAATTCAAATACA+GGG - chr4_3:57605322-57605341 None:intergenic 30.0%
AGCCCAAATAATTCAAATAC+AGG - chr4_3:57605323-57605342 None:intergenic 30.0%
AGAAGGAATAAGATTCATAG+TGG + chr4_3:57605682-57605701 Msa0650520:intron 30.0%
GACTAACGTTTATCAATTTC+GGG + chr4_3:57605921-57605940 Msa0650520:intron 30.0%
ACTAACGTTTATCAATTTCG+GGG + chr4_3:57605922-57605941 Msa0650520:intron 30.0%
ATTGATATTTCGTTAACTGC+AGG + chr4_3:57605950-57605969 Msa0650520:intron 30.0%
TTGATATTTCGTTAACTGCA+GGG + chr4_3:57605951-57605970 Msa0650520:intron 30.0%
AGTATTTATTGCTCACGAAA+AGG + chr4_3:57606101-57606120 Msa0650520:intron 30.0%
! CTTGATCTCAAGTTTCATTT+TGG + chr4_3:57606512-57606531 Msa0650520:intron 30.0%
! CACATTTGATTAGCTAAGTT+AGG + chr4_3:57606594-57606613 Msa0650520:intron 30.0%
TTAACCAGCCAAATAAATAG+TGG - chr4_3:57606738-57606757 None:intergenic 30.0%
TTCTTCTGTGAATGTTGATA+AGG + chr4_3:57606999-57607018 Msa0650520:CDS 30.0%
!!! TAGTTTTATGTGACGATGTT+AGG + chr4_3:57607578-57607597 Msa0650520:intron 30.0%
! GTTGTTTGCACAATGATTTT+AGG - chr4_3:57607677-57607696 None:intergenic 30.0%
TATGTAATCACCTTGGATAT+GGG - chr4_3:57607769-57607788 None:intergenic 30.0%
ATATGTAATCACCTTGGATA+TGG - chr4_3:57607770-57607789 None:intergenic 30.0%
CAAAGTTTCGTTTGTTTCAA+AGG - chr4_3:57607922-57607941 None:intergenic 30.0%
AATTTCAAGGTCAAGAATGT+TGG + chr4_3:57608019-57608038 Msa0650520:intron 30.0%
!! TCTAATTGTTGATGACCATT+AGG + chr4_3:57608047-57608066 Msa0650520:intron 30.0%
ATGTAACTAAGCATTTCTGA+GGG - chr4_3:57608105-57608124 None:intergenic 30.0%
AATGTAACTAAGCATTTCTG+AGG - chr4_3:57608106-57608125 None:intergenic 30.0%
!!! TCACTATCTTTTCTAGAACA+TGG - chr4_3:57608193-57608212 None:intergenic 30.0%
GCATTCTTGTATCATAATGT+AGG + chr4_3:57608216-57608235 Msa0650520:intron 30.0%
TATGTTGTCAATACAGCTTT+AGG - chr4_3:57608308-57608327 None:intergenic 30.0%
GAACTCACAAGTAATCTTTA+AGG + chr4_3:57608550-57608569 Msa0650520:three_prime_UTR 30.0%
!!! CTCTTTTGTTTTTGAATGTG+AGG + chr4_3:57608580-57608599 Msa0650520:three_prime_UTR 30.0%
ATACCAGAAATTGGACTTAT+AGG - chr4_3:57608624-57608643 None:intergenic 30.0%
!! GCTTTTTCTATACCAGAAAT+TGG - chr4_3:57608633-57608652 None:intergenic 30.0%
TTATAGATCATATGTGTGAG+TGG + chr4_3:57608657-57608676 Msa0650520:three_prime_UTR 30.0%
! AGAAAATGTATTGGTCTCTT+AGG + chr4_3:57608757-57608776 Msa0650520:three_prime_UTR 30.0%
GTGTATCTAGGTATAATGAA+TGG + chr4_3:57608838-57608857 Msa0650520:three_prime_UTR 30.0%
TATCTAGGTATAATGAATGG+TGG + chr4_3:57608841-57608860 Msa0650520:three_prime_UTR 30.0%
! TCTTTCATCTATCTAAAGCG+TGG + chr4_3:57603892-57603911 Msa0650520:five_prime_UTR 35.0%
ATAAAGTTGTGAATGGTTGG+AGG + chr4_3:57604047-57604066 Msa0650520:exon 35.0%
AAGTTGGAAAGCAAAGTCAT+GGG - chr4_3:57604116-57604135 None:intergenic 35.0%
! ACTTTGCTTTCCAACTTGTT+TGG + chr4_3:57604119-57604138 Msa0650520:CDS 35.0%
GAAGTATATATTACCTGAGG+TGG - chr4_3:57604272-57604291 None:intergenic 35.0%
TGATATTTCGTTAACTGCAG+GGG - chr4_3:57605952-57605971 None:intergenic 35.0%
TAACGTTTATCAATTTCGGG+GGG - chr4_3:57605924-57605943 None:intergenic 35.0%
CTAACGTTTATCAATTTCGG+GGG - chr4_3:57605923-57605942 None:intergenic 35.0%
CCCCTGTAGTTTATCAATAA+TGG + chr4_3:57605286-57605305 Msa0650520:intron 35.0%
CCCCCTGTATTTGAATTATT+TGG + chr4_3:57605317-57605336 Msa0650520:intron 35.0%
ACAAACAGAACTAGCATAAC+AGG - chr4_3:57605361-57605380 None:intergenic 35.0%
!! TGTTATGCTAGTTCTGTTTG+TGG + chr4_3:57605360-57605379 Msa0650520:intron 35.0%
TGTTGGATGGAGGAAATTAA+CGG + chr4_3:57605886-57605905 Msa0650520:intron 35.0%
CTAACGTTTATCAATTTCGG+GGG + chr4_3:57605923-57605942 Msa0650520:intron 35.0%
TAACGTTTATCAATTTCGGG+GGG + chr4_3:57605924-57605943 Msa0650520:intron 35.0%
TGATATTTCGTTAACTGCAG+GGG + chr4_3:57605952-57605971 Msa0650520:intron 35.0%
ATTTATTGCTCACGAAAAGG+AGG + chr4_3:57606104-57606123 Msa0650520:intron 35.0%
TTCTTCGGTATCTTAGAGTT+TGG - chr4_3:57606385-57606404 None:intergenic 35.0%
CTAAATGATCAAGTGCTTTC+TGG + chr4_3:57606538-57606557 Msa0650520:intron 35.0%
CACGAAATCAAAAGATACCT+TGG + chr4_3:57606670-57606689 Msa0650520:intron 35.0%
CAAAAGATACCTTGGAAGTT+TGG + chr4_3:57606678-57606697 Msa0650520:intron 35.0%
TCAACCACTATTTATTTGGC+TGG + chr4_3:57606731-57606750 Msa0650520:intron 35.0%
TTGGATTTGAGCATTTGAGT+AGG - chr4_3:57606833-57606852 None:intergenic 35.0%
CAGAAAATGGATGTTCAGAT+TGG - chr4_3:57606852-57606871 None:intergenic 35.0%
GAAGAATACTCAACAGAGTT+TGG - chr4_3:57606952-57606971 None:intergenic 35.0%
TATGGACAGAAACAAGTGAA+AGG + chr4_3:57607051-57607070 Msa0650520:CDS 35.0%
ACTGAAGTAGATTATGAACC+TGG + chr4_3:57607294-57607313 Msa0650520:CDS 35.0%
!! AATTTTGTGTCTGAAGTTGC+AGG + chr4_3:57607876-57607895 Msa0650520:intron 35.0%
TAACATTAGTCCACACATTC+AGG + chr4_3:57607972-57607991 Msa0650520:intron 35.0%
CTAAAATTGTCCTGAATGTG+TGG - chr4_3:57607985-57608004 None:intergenic 35.0%
CTATTACAAATGCACAACTC+CGG + chr4_3:57608241-57608260 Msa0650520:CDS 35.0%
TATTACAAATGCACAACTCC+GGG + chr4_3:57608242-57608261 Msa0650520:CDS 35.0%
! GCTGTATTGACAACATATGA+AGG + chr4_3:57608311-57608330 Msa0650520:CDS 35.0%
ATGCACTATTATTGCTAGCA+AGG - chr4_3:57608382-57608401 None:intergenic 35.0%
AGATGCAGAATTTCAACAGA+AGG + chr4_3:57608423-57608442 Msa0650520:CDS 35.0%
GATGCAGAATTTCAACAGAA+GGG + chr4_3:57608424-57608443 Msa0650520:CDS 35.0%
ATGCAGAATTTCAACAGAAG+GGG + chr4_3:57608425-57608444 Msa0650520:CDS 35.0%
! TATTGGTCTCTTAGGAGTAA+TGG + chr4_3:57608765-57608784 Msa0650520:three_prime_UTR 35.0%
ATAATGAATGGTGGCATGTT+TGG + chr4_3:57608850-57608869 Msa0650520:three_prime_UTR 35.0%
GAAAGATAGGAGAAGATTGC+AGG + chr4_3:57603844-57603863 Msa0650520:five_prime_UTR 40.0%
! CAAGTTGGAAAGCAAAGTCA+TGG - chr4_3:57604117-57604136 None:intergenic 40.0%
ATCGTTGTCACCAAACAAGT+TGG - chr4_3:57604132-57604151 None:intergenic 40.0%
CTTCCATAGAGTCAAGTCAA+CGG + chr4_3:57604333-57604352 Msa0650520:intron 40.0%
!! TTACCGTTGACTTGACTCTA+TGG - chr4_3:57604339-57604358 None:intergenic 40.0%
ATATTTCGTTAACTGCAGGG+GGG - chr4_3:57605954-57605973 None:intergenic 40.0%
GATATTTCGTTAACTGCAGG+GGG - chr4_3:57605953-57605972 None:intergenic 40.0%
AACGTTTATCAATTTCGGGG+GGG - chr4_3:57605925-57605944 None:intergenic 40.0%
TGTCGGATGGAGGAAATTAA+CGG - chr4_3:57604652-57604671 None:intergenic 40.0%
!! GTTGATGGTGTGTATCGATT+TGG + chr4_3:57604939-57604958 Msa0650520:intron 40.0%
!! TGTATCGATTTGGACAGAAG+AGG + chr4_3:57604949-57604968 Msa0650520:intron 40.0%
!! GTATCGATTTGGACAGAAGA+GGG + chr4_3:57604950-57604969 Msa0650520:intron 40.0%
!! TATCGATTTGGACAGAAGAG+GGG + chr4_3:57604951-57604970 Msa0650520:intron 40.0%
! GGGAATTGAAGCTTGCTTTA+GGG + chr4_3:57604972-57604991 Msa0650520:intron 40.0%
! GGTTTTTGACACGAACTTGT+TGG - chr4_3:57605235-57605254 None:intergenic 40.0%
!! ATGCTAGTTCTGTTTGTGGT+TGG + chr4_3:57605364-57605383 Msa0650520:intron 40.0%
AACGTTTATCAATTTCGGGG+GGG + chr4_3:57605925-57605944 Msa0650520:intron 40.0%
GATATTTCGTTAACTGCAGG+GGG + chr4_3:57605953-57605972 Msa0650520:intron 40.0%
ATATTTCGTTAACTGCAGGG+GGG + chr4_3:57605954-57605973 Msa0650520:intron 40.0%
TCGGTATCTTAGAGTTTGGT+CGG - chr4_3:57606381-57606400 None:intergenic 40.0%
GGATTTACTGCACATCTGAT+TGG + chr4_3:57606615-57606634 Msa0650520:intron 40.0%
ACTGCACATCTGATTGGAAT+TGG + chr4_3:57606621-57606640 Msa0650520:intron 40.0%
!! GGTACTGATGATGCAGAAAA+TGG - chr4_3:57606865-57606884 None:intergenic 40.0%
!! TGTGTCAATGAGGTACTGTT+GGG - chr4_3:57606886-57606905 None:intergenic 40.0%
!! TTGTGTCAATGAGGTACTGT+TGG - chr4_3:57606887-57606906 None:intergenic 40.0%
TGATGGAACTTGTGTCAATG+AGG - chr4_3:57606896-57606915 None:intergenic 40.0%
! GTTGATAAGGCTAATGACGA+CGG + chr4_3:57607012-57607031 Msa0650520:CDS 40.0%
GTGCACTTGTAATAACTTCG+AGG - chr4_3:57607087-57607106 None:intergenic 40.0%
! TTTTTCGTCACAAGACAGCT+TGG - chr4_3:57607114-57607133 None:intergenic 40.0%
! TATGTGAAAGGGATGGATTC+AGG - chr4_3:57607640-57607659 None:intergenic 40.0%
TGAATCCATCCCTTTCACAT+AGG + chr4_3:57607639-57607658 Msa0650520:CDS 40.0%
TGAGACAGTCCTATGTGAAA+GGG - chr4_3:57607651-57607670 None:intergenic 40.0%
TTGAGACAGTCCTATGTGAA+AGG - chr4_3:57607652-57607671 None:intergenic 40.0%
TGTGCAAACAACAAGTGATG+TGG + chr4_3:57607685-57607704 Msa0650520:CDS 40.0%
AACAAGTGATGTGGATCTCT+TGG + chr4_3:57607694-57607713 Msa0650520:CDS 40.0%
TCTTGGAGGATGGATATAGA+TGG + chr4_3:57607711-57607730 Msa0650520:CDS 40.0%
GGATATAGATGGCGCAAATA+CGG + chr4_3:57607722-57607741 Msa0650520:CDS 40.0%
GATATAGATGGCGCAAATAC+GGG + chr4_3:57607723-57607742 Msa0650520:CDS 40.0%
GCTCTAGTAGACAATCCTAA+TGG - chr4_3:57608065-57608084 None:intergenic 40.0%
! AGTGGCACATCTAAGATTGA+AGG + chr4_3:57608466-57608485 Msa0650520:CDS 40.0%
ATAGGCCTTGGTCAAAACTT+TGG - chr4_3:57608606-57608625 None:intergenic 40.0%
GAAATTGGACTTATAGGCCT+TGG - chr4_3:57608618-57608637 None:intergenic 40.0%
AGGCCTATAAGTCCAATTTC+TGG + chr4_3:57608618-57608637 Msa0650520:three_prime_UTR 40.0%
ATCAAGCTAAGCATACCACT+TGG - chr4_3:57608806-57608825 None:intergenic 40.0%
! GAAAGAGTGAGAGTGTATCT+AGG + chr4_3:57608826-57608845 Msa0650520:three_prime_UTR 40.0%
GGAGGATTATGAGTGAATTC+AGG + chr4_3:57608879-57608898 Msa0650520:three_prime_UTR 40.0%
GAAGATTGCAGGCATAGCAT+AGG + chr4_3:57603855-57603874 Msa0650520:five_prime_UTR 45.0%
AAGTTGTGAATGGTTGGAGG+TGG + chr4_3:57604050-57604069 Msa0650520:exon 45.0%
TGAATGGTTGGAGGTGGAAA+TGG + chr4_3:57604056-57604075 Msa0650520:exon 45.0%
CGATGACTGCAAGTCTTTCT+CGG + chr4_3:57604148-57604167 Msa0650520:CDS 45.0%
ATCGAGCTTAAGGGGTCATA+TGG - chr4_3:57604366-57604385 None:intergenic 45.0%
ATTGACGCGCCTTGCAATTT+CGG - chr4_3:57605979-57605998 None:intergenic 45.0%
ATGGAGGAAATTAACGGAGG+GGG - chr4_3:57605892-57605911 None:intergenic 45.0%
GATGGAGGAAATTAACGGAG+GGG - chr4_3:57605891-57605910 None:intergenic 45.0%
GGATGGAGGAAATTAACGGA+GGG - chr4_3:57605890-57605909 None:intergenic 45.0%
TAACTGCCACATCAGCATGT+CGG - chr4_3:57605869-57605888 None:intergenic 45.0%
!! ATCGATTTGGACAGAAGAGG+GGG + chr4_3:57604952-57604971 Msa0650520:intron 45.0%
! GGGGAATTGAAGCTTGCTTT+AGG + chr4_3:57604971-57604990 Msa0650520:intron 45.0%
!! CTAGTTCTGTTTGTGGTTGG+TGG + chr4_3:57605367-57605386 Msa0650520:intron 45.0%
TAACTGCCACATCAGCATGT+TGG + chr4_3:57605869-57605888 Msa0650520:intron 45.0%
TGGATGGAGGAAATTAACGG+AGG + chr4_3:57605889-57605908 Msa0650520:intron 45.0%
GGATGGAGGAAATTAACGGA+GGG + chr4_3:57605890-57605909 Msa0650520:intron 45.0%
GATGGAGGAAATTAACGGAG+GGG + chr4_3:57605891-57605910 Msa0650520:intron 45.0%
ATGGAGGAAATTAACGGAGG+GGG + chr4_3:57605892-57605911 Msa0650520:intron 45.0%
ATTGACGCGCCTTGCAATTT+CGG + chr4_3:57605979-57605998 Msa0650520:intron 45.0%
!! TGCTTGCTGTTGGGAGAATA+AGG - chr4_3:57606800-57606819 None:intergenic 45.0%
!! TTGTGCTAGTGCTTGCTGTT+GGG - chr4_3:57606809-57606828 None:intergenic 45.0%
CTAATGACGACGGATACAAC+TGG + chr4_3:57607022-57607041 Msa0650520:CDS 45.0%
GGATACAACTGGAGGAAGTA+TGG + chr4_3:57607033-57607052 Msa0650520:CDS 45.0%
GCAGTTACATGACCATCTAC+AGG - chr4_3:57607150-57607169 None:intergenic 45.0%
! TTGTCGTTTGTGAGCTTGCT+AGG - chr4_3:57607213-57607232 None:intergenic 45.0%
!! AGCGTGCAACAAGTTTTGTC+AGG + chr4_3:57607237-57607256 Msa0650520:CDS 45.0%
ACAAGTGACAGTGAGGAAGA+AGG + chr4_3:57607261-57607280 Msa0650520:CDS 45.0%
ATGAACCTGGTCTCAAGAGA+AGG + chr4_3:57607307-57607326 Msa0650520:CDS 45.0%
CTGGTCTCAAGAGAAGGTAA+GGG + chr4_3:57607313-57607332 Msa0650520:intron 45.0%
! AAGGGATGGATTCAGGAGTT+TGG - chr4_3:57607633-57607652 None:intergenic 45.0%
ACAGTCCTATGTGAAAGGGA+TGG - chr4_3:57607647-57607666 None:intergenic 45.0%
AAGTGATGTGGATCTCTTGG+AGG + chr4_3:57607697-57607716 Msa0650520:CDS 45.0%
TACGGGCAGAAAGTTGTCAA+AGG + chr4_3:57607740-57607759 Msa0650520:CDS 45.0%
TCAAAGGCAACCCATATCCA+AGG + chr4_3:57607756-57607775 Msa0650520:CDS 45.0%
! ATGTTCGGAAGCATGTTGAG+AGG + chr4_3:57608270-57608289 Msa0650520:CDS 45.0%
! TGTTCGGAAGCATGTTGAGA+GGG + chr4_3:57608271-57608290 Msa0650520:CDS 45.0%
GCATGTTGAGAGGGTTTCAA+CGG + chr4_3:57608280-57608299 Msa0650520:CDS 45.0%
!! TGACTGTTAGTCTTAGCTGC+TGG - chr4_3:57608356-57608375 None:intergenic 45.0%
!! TGAGGCCAAAGTTTTGACCA+AGG + chr4_3:57608598-57608617 Msa0650520:three_prime_UTR 45.0%
AGCTAAGCATACCACTTGGT+GGG - chr4_3:57608802-57608821 None:intergenic 45.0%
AAGCTAAGCATACCACTTGG+TGG - chr4_3:57608803-57608822 None:intergenic 45.0%
!!! ATTTTTGTTAATAATTAAAA+AGG + chr4_3:57604512-57604531 Msa0650520:intron 5.0%
TTGGAGGTGGAAATGGAGAG+TGG + chr4_3:57604063-57604082 Msa0650520:CDS 50.0%
GAAAGCAAAGTCATGGGACC+TGG - chr4_3:57604110-57604129 None:intergenic 50.0%
GGAGAAGTGAACATGGCCAA+CGG - chr4_3:57604251-57604270 None:intergenic 50.0%
CTGAGGTGGAGAAGTGAACA+TGG - chr4_3:57604258-57604277 None:intergenic 50.0%
CATGTTCACTTCTCCACCTC+AGG + chr4_3:57604256-57604275 Msa0650520:CDS 50.0%
GAGCTTAAGGGGTCATATGG+TGG - chr4_3:57604363-57604382 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG - chr4_3:57605991-57606010 None:intergenic 50.0%
AATACCCCCCCGAAATTGCA+AGG + chr4_3:57604547-57604566 Msa0650520:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG - chr4_3:57605980-57605999 None:intergenic 50.0%
TGGAGGAAATTAACGGAGGG+GGG - chr4_3:57605893-57605912 None:intergenic 50.0%
CGGATGGAGGAAATTAACGG+AGG - chr4_3:57604649-57604668 None:intergenic 50.0%
CACTGCCACATGGTCAGAAA+AGG + chr4_3:57604702-57604721 Msa0650520:intron 50.0%
! GCATGCCTTTTCTGACCATG+TGG - chr4_3:57605828-57605847 None:intergenic 50.0%
! AAAAGGCATGCCACGTCAGA+GGG + chr4_3:57604719-57604738 Msa0650520:intron 50.0%
! AAAAGGCATGCCACGTCAGA+GGG - chr4_3:57604719-57604738 None:intergenic 50.0%
! GCATGCCTTTTCTGACCATG+TGG + chr4_3:57605828-57605847 Msa0650520:intron 50.0%
CACTGCCACATGGTCAGAAA+AGG - chr4_3:57604702-57604721 None:intergenic 50.0%
TGCCACATCAGCATGTTGGA+TGG + chr4_3:57605873-57605892 Msa0650520:intron 50.0%
CTCCATCCAACATGCTGATG+TGG - chr4_3:57605878-57605897 None:intergenic 50.0%
CACATCAGCATGTTGGATGG+AGG + chr4_3:57605876-57605895 Msa0650520:intron 50.0%
TGGAGGAAATTAACGGAGGG+GGG + chr4_3:57605893-57605912 Msa0650520:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG + chr4_3:57605980-57605999 Msa0650520:intron 50.0%
AATACCCCCCCGAAATTGCA+AGG - chr4_3:57604547-57604566 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG + chr4_3:57605991-57606010 Msa0650520:intron 50.0%
!! CTTGTGCTAGTGCTTGCTGT+TGG - chr4_3:57606810-57606829 None:intergenic 50.0%
ATGACGACGGATACAACTGG+AGG + chr4_3:57607025-57607044 Msa0650520:CDS 50.0%
!! TTGTGAGCTTGCTAGGACGT+GGG - chr4_3:57607206-57607225 None:intergenic 50.0%
!! TTTGTGAGCTTGCTAGGACG+TGG - chr4_3:57607207-57607226 None:intergenic 50.0%
GTCAGGAACAAGTGACAGTG+AGG + chr4_3:57607254-57607273 Msa0650520:CDS 50.0%
CCTTACCTTCTCTTGAGACC+AGG - chr4_3:57607315-57607334 None:intergenic 50.0%
CCTGGTCTCAAGAGAAGGTA+AGG + chr4_3:57607312-57607331 Msa0650520:intron 50.0%
GATGTGGATCTCTTGGAGGA+TGG + chr4_3:57607701-57607720 Msa0650520:CDS 50.0%
CAACTCCGGGTTGCAATGTT+CGG + chr4_3:57608255-57608274 Msa0650520:CDS 50.0%
TGCTTCCGAACATTGCAACC+CGG - chr4_3:57608263-57608282 None:intergenic 50.0%
TCAACATCAGCCTTCAGCAG+TGG + chr4_3:57608448-57608467 Msa0650520:CDS 50.0%
! CTTAGATGTGCCACTGCTGA+AGG - chr4_3:57608461-57608480 None:intergenic 50.0%
! ATACCACTTGGTGGGGAGTT+TGG - chr4_3:57608794-57608813 None:intergenic 50.0%
! GCTAAGCATACCACTTGGTG+GGG - chr4_3:57608801-57608820 None:intergenic 50.0%
! TGGTGGCATGTTTGGCTTCA+TGG + chr4_3:57608858-57608877 Msa0650520:three_prime_UTR 50.0%
! TGGCATGTTTGGCTTCATGG+AGG + chr4_3:57608861-57608880 Msa0650520:three_prime_UTR 50.0%
GGAAATGGAGAGTGGCCTTC+AGG + chr4_3:57604071-57604090 Msa0650520:CDS 55.0%
AATGGAGAGTGGCCTTCAGG+TGG + chr4_3:57604074-57604093 Msa0650520:CDS 55.0%
ATGGAGAGTGGCCTTCAGGT+GGG + chr4_3:57604075-57604094 Msa0650520:CDS 55.0%
GACACGTTGGATGTGGAGCA+TGG + chr4_3:57604185-57604204 Msa0650520:CDS 55.0%
ACGTTGGATGTGGAGCATGG+AGG + chr4_3:57604188-57604207 Msa0650520:CDS 55.0%
TTGGATGTGGAGCATGGAGG+AGG + chr4_3:57604191-57604210 Msa0650520:CDS 55.0%
TGACGCGCCTTGCAATTTCG+GGG - chr4_3:57605981-57606000 None:intergenic 55.0%
CACATCAGCATGTCGGATGG+AGG - chr4_3:57604662-57604681 None:intergenic 55.0%
CTCCATCCGACATGCTGATG+TGG + chr4_3:57604660-57604679 Msa0650520:intron 55.0%
TGCCACATCAGCATGTCGGA+TGG - chr4_3:57604665-57604684 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG + chr4_3:57604718-57604737 Msa0650520:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG + chr4_3:57604720-57604739 Msa0650520:intron 55.0%
TCAATTACCCCCCTCTGACG+TGG - chr4_3:57605806-57605825 None:intergenic 55.0%
!! TGGTTGGTGGCGTGTTTCTG+CGG + chr4_3:57605380-57605399 Msa0650520:intron 55.0%
CTCATGCACCTAGACACTGC+AGG - chr4_3:57605423-57605442 None:intergenic 55.0%
TCAATTACCCCCCTCTGACG+TGG + chr4_3:57605806-57605825 Msa0650520:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG - chr4_3:57604720-57604739 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG - chr4_3:57604718-57604737 None:intergenic 55.0%
TGACGCGCCTTGCAATTTCG+GGG + chr4_3:57605981-57606000 Msa0650520:intron 55.0%
TCACCAAACTCCCCACCAAG+TGG + chr4_3:57608788-57608807 Msa0650520:three_prime_UTR 55.0%
TGGAGAGTGGCCTTCAGGTG+GGG + chr4_3:57604076-57604095 Msa0650520:CDS 60.0%
GGACTAAACCCCCCACCTGA+AGG - chr4_3:57604089-57604108 None:intergenic 60.0%
TCAGGTGGGGGGTTTAGTCC+AGG + chr4_3:57604089-57604108 Msa0650520:CDS 60.0%
TCTTTCTCGGAGCTCCTCGC+TGG + chr4_3:57604161-57604180 Msa0650520:CDS 60.0%
GATGTGGAGCATGGAGGAGG+AGG + chr4_3:57604194-57604213 Msa0650520:CDS 60.0%
!! TGGTGGTGGCTTGTCACCGT+TGG + chr4_3:57604232-57604251 Msa0650520:CDS 60.0%
ACGCGCCTTGCAATTTCGGG+GGG - chr4_3:57605983-57606002 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG - chr4_3:57605982-57606001 None:intergenic 60.0%
GTGGCAGTTAACTGCCCACG+TGG + chr4_3:57604679-57604698 Msa0650520:intron 60.0%
ACCATGTGGCAGTGCCACGT+GGG - chr4_3:57605842-57605861 None:intergenic 60.0%
AAGGCATGCCACGTCAGAGG+GGG + chr4_3:57604721-57604740 Msa0650520:intron 60.0%
TTTCTGCGGCCTGCAGTGTC+TGG + chr4_3:57605394-57605413 Msa0650520:intron 60.0%
TTCTGCGGCCTGCAGTGTCT+GGG + chr4_3:57605395-57605414 Msa0650520:intron 60.0%
TCTGGGTGCCTGCAGTGTCT+AGG + chr4_3:57605412-57605431 Msa0650520:intron 60.0%
AAGGCATGCCACGTCAGAGG+GGG - chr4_3:57604721-57604740 None:intergenic 60.0%
ACCATGTGGCAGTGCCACGT+GGG + chr4_3:57605842-57605861 Msa0650520:intron 60.0%
GTGGCAGTTAACTGCCCACG+TGG - chr4_3:57604679-57604698 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG + chr4_3:57605982-57606001 Msa0650520:intron 60.0%
ACGCGCCTTGCAATTTCGGG+GGG + chr4_3:57605983-57606002 Msa0650520:intron 60.0%
GGAGAGTGGCCTTCAGGTGG+GGG + chr4_3:57604077-57604096 Msa0650520:CDS 65.0%
GAGAGTGGCCTTCAGGTGGG+GGG + chr4_3:57604078-57604097 Msa0650520:CDS 65.0%
CATCCAACGTGTCGCCAGCG+AGG - chr4_3:57604178-57604197 None:intergenic 65.0%
CGCTGGCGACACGTTGGATG+TGG + chr4_3:57604178-57604197 Msa0650520:CDS 65.0%
GTGGAGCATGGAGGAGGAGG+AGG + chr4_3:57604197-57604216 Msa0650520:CDS 65.0%
GAGCATGGAGGAGGAGGAGG+AGG + chr4_3:57604200-57604219 Msa0650520:CDS 65.0%
CATGGAGGAGGAGGAGGAGG+AGG + chr4_3:57604203-57604222 Msa0650520:CDS 65.0%
GGAGGAGGAGGAGGAGGAAG+AGG + chr4_3:57604209-57604228 Msa0650520:CDS 65.0%
GGAGGAGGAGGAGGAAGAGG+TGG + chr4_3:57604212-57604231 Msa0650520:CDS 65.0%
GGAGGAGGAGGAAGAGGTGG+TGG + chr4_3:57604215-57604234 Msa0650520:CDS 65.0%
! GGAGGAGGAAGAGGTGGTGG+TGG + chr4_3:57604218-57604237 Msa0650520:CDS 65.0%
CGCGCCTTGCAATTTCGGGG+GGG - chr4_3:57605984-57606003 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG - chr4_3:57605841-57605860 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG + chr4_3:57604722-57604741 Msa0650520:intron 65.0%
TGCAGGCACCCAGACACTGC+AGG - chr4_3:57605406-57605425 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG - chr4_3:57604722-57604741 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG + chr4_3:57605841-57605860 Msa0650520:intron 65.0%
CGCGCCTTGCAATTTCGGGG+GGG + chr4_3:57605984-57606003 Msa0650520:intron 65.0%
GCTCCTCGCTGGCGACACGT+TGG + chr4_3:57604172-57604191 Msa0650520:CDS 70.0%
GCCCACGTGGCACTGCCACA+TGG + chr4_3:57604692-57604711 Msa0650520:intron 70.0%
GCCCACGTGGCACTGCCACA+TGG - chr4_3:57604692-57604711 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 57603646 57608918 57603646 ID=Msa0650520;Name=Msa0650520
chr4_3 mRNA 57603646 57608918 57603646 ID=Msa0650520-mRNA-1;Parent=Msa0650520;Name=Msa0650520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=413|1|1|1|1|1|4|416|385
chr4_3 exon 57603646 57604277 57603646 ID=Msa0650520-mRNA-1:exon:15104;Parent=Msa0650520-mRNA-1
chr4_3 exon 57606814 57607328 57606814 ID=Msa0650520-mRNA-1:exon:15105;Parent=Msa0650520-mRNA-1
chr4_3 exon 57607619 57607777 57607619 ID=Msa0650520-mRNA-1:exon:15106;Parent=Msa0650520-mRNA-1
chr4_3 exon 57608238 57608918 57608238 ID=Msa0650520-mRNA-1:exon:15107;Parent=Msa0650520-mRNA-1
chr4_3 five_prime_UTR 57603646 57604058 57603646 ID=Msa0650520-mRNA-1:five_prime_utr;Parent=Msa0650520-mRNA-1
chr4_3 CDS 57604059 57604277 57604059 ID=Msa0650520-mRNA-1:cds;Parent=Msa0650520-mRNA-1
chr4_3 CDS 57606814 57607328 57606814 ID=Msa0650520-mRNA-1:cds;Parent=Msa0650520-mRNA-1
chr4_3 CDS 57607619 57607777 57607619 ID=Msa0650520-mRNA-1:cds;Parent=Msa0650520-mRNA-1
chr4_3 CDS 57608238 57608502 57608238 ID=Msa0650520-mRNA-1:cds;Parent=Msa0650520-mRNA-1
chr4_3 three_prime_UTR 57608503 57608918 57608503 ID=Msa0650520-mRNA-1:three_prime_utr;Parent=Msa0650520-mRNA-1
Gene Sequence

>Msa0650520

ATGGTTGGAGGTGGAAATGGAGAGTGGCCTTCAGGTGGGGGGTTTAGTCCAGGTCCCATGACTTTGCTTTCCAACTTGTTTGGTGACAACGATGACTGCAAGTCTTTCTCGGAGCTCCTCGCTGGCGACACGTTGGATGTGGAGCATGGAGGAGGAGGAGGAGGAGGAAGAGGTGGTGGTGGCTTGTCACCGTTGGCCATGTTCACTTCTCCACCTCAGCAAGCACTAGCACAAGCCTACTCAAATGCTCAAATCCAATCTGAACATCCATTTTCTGCATCATCAGTACCCAACAGTACCTCATTGACACAAGTTCCATCAATAACATTCAATAACATTGCACAACAACTGATACCAAACTCTGTTGAGTATTCTTCTAACTCAGAACAAAGACTACAGAAGTCTTCTTCTGTGAATGTTGATAAGGCTAATGACGACGGATACAACTGGAGGAAGTATGGACAGAAACAAGTGAAAGGTTGCGAGTTTCCTCGAAGTTATTACAAGTGCACACATCCAAGCTGTCTTGTGACGAAAAAAGTTGAACGCGATCCTGTAGATGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACATTCATCAACGCCCACGTCCTAGCAAGCTCACAAACGACAATTCAAGCGTGCAACAAGTTTTGTCAGGAACAAGTGACAGTGAGGAAGAAGGAGATCATGAAACTGAAGTAGATTATGAACCTGGTCTCAAGAGAAGAAAAACAGAAGCCAAACTCCTGAATCCATCCCTTTCACATAGGACTGTCTCAAAGCCTAAAATCATTGTGCAAACAACAAGTGATGTGGATCTCTTGGAGGATGGATATAGATGGCGCAAATACGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACTCCGGGTTGCAATGTTCGGAAGCATGTTGAGAGGGTTTCAACGGATCCTAAAGCTGTATTGACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAACAGTCATAACCTTGCTAGCAATAATAGTGCATCACTGCTAAAATCACAAAATGAGATGCAGAATTTCAACAGAAGGGGTCAACATCAGCCTTCAGCAGTGGCACATCTAAGATTGAAGGAAGAGCATATATAA
Protein sequence

>Msa0650520

MVGGGNGEWPSGGGFSPGPMTLLSNLFGDNDDCKSFSELLAGDTLDVEHGGGGGGGRGGGGLSPLAMFTSPPQQALAQAYSNAQIQSEHPFSASSVPNSTSLTQVPSITFNNIAQQLIPNSVEYSSNSEQRLQKSSSVNVDKANDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCLVTKKVERDPVDGHVTAIIYKGEHIHQRPRPSKLTNDNSSVQQVLSGTSDSEEEGDHETEVDYEPGLKRRKTEAKLLNPSLSHRTVSKPKIIVQTTSDVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVLTTYEGKHNHDVPAAKTNSHNLASNNSASLLKSQNEMQNFNRRGQHQPSAVAHLRLKEEHI*