AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692540 MtrunA17_Chr4g0042831 96.134 388 12 1 1 385 1 388 0.0 774
Msa0692540 MtrunA17_Chr5g0418191 55.281 445 113 14 2 385 13 432 1.02e-140 407
Msa0692540 MtrunA17_Chr7g0218081 41.057 492 168 15 11 385 33 519 2.64e-101 310
Msa0692540 MtrunA17_Chr7g0243891 43.642 346 129 10 65 375 148 462 3.16e-75 243
Msa0692540 MtrunA17_Chr3g0101131 50.193 259 82 6 137 352 235 489 3.36e-75 244
Msa0692540 MtrunA17_Chr5g0445311 49.802 253 94 4 127 347 182 433 2.12e-74 241
Msa0692540 MtrunA17_Chr5g0445311 36.957 138 76 3 145 272 364 500 2.85e-14 74.3
Msa0692540 MtrunA17_Chr3g0106491 51.271 236 79 5 140 340 193 427 2.55e-71 231
Msa0692540 MtrunA17_Chr4g0004911 46.992 266 96 7 94 340 159 398 8.81e-70 227
Msa0692540 MtrunA17_Chr5g0432161 49.398 249 74 6 140 340 239 483 2.29e-68 226
Msa0692540 MtrunA17_Chr7g0263531 45.174 259 101 5 136 354 180 437 1.94e-65 214
Msa0692540 MtrunA17_Chr5g0447701 39.754 244 116 5 133 347 80 321 1.16e-46 164
Msa0692540 MtrunA17_Chr4g0074001 36.190 315 154 8 71 340 109 421 6.09e-46 164
Msa0692540 MtrunA17_Chr4g0074001 52.381 63 30 0 146 208 360 422 9.82e-13 69.3
Msa0692540 MtrunA17_Chr3g0079691 53.595 153 61 2 224 367 433 584 3.14e-42 157
Msa0692540 MtrunA17_Chr3g0079691 70.312 64 18 1 145 208 280 342 1.65e-23 102
Msa0692540 MtrunA17_Chr3g0079691 60.000 60 23 1 278 337 280 338 1.65e-14 75.1
Msa0692540 MtrunA17_Chr3g0079691 48.837 86 39 2 132 215 485 567 1.71e-14 75.1
Msa0692540 MtrunA17_Chr7g0249311 54.135 133 53 1 212 344 334 458 2.08e-40 151
Msa0692540 MtrunA17_Chr7g0249311 68.657 67 20 1 142 208 176 241 1.19e-23 102
Msa0692540 MtrunA17_Chr7g0249311 41.121 107 50 3 278 372 179 284 1.10e-15 79.0
Msa0692540 MtrunA17_Chr7g0249301 67.708 96 31 0 245 340 259 354 2.09e-39 144
Msa0692540 MtrunA17_Chr7g0249301 63.492 63 22 1 146 208 63 124 5.14e-19 87.8
Msa0692540 MtrunA17_Chr7g0249301 46.154 91 39 2 277 358 61 150 2.20e-15 77.0
Msa0692540 MtrunA17_Chr7g0249301 49.315 73 34 1 132 204 282 351 8.86e-13 68.9
Msa0692540 MtrunA17_Chr1g0188941 61.728 81 31 0 257 337 30 110 2.93e-34 122
Msa0692540 MtrunA17_Chr1g0188941 46.988 83 43 1 124 206 31 112 3.23e-18 79.7
Msa0692540 MtrunA17_Chr5g0447711 32.328 232 141 4 133 349 71 301 9.52e-31 119
Msa0692540 MtrunA17_Chr5g0447711 36.842 76 48 0 145 220 230 305 2.63e-12 67.0
Msa0692540 MtrunA17_Chr4g0051881 51.429 105 51 0 235 339 135 239 1.67e-29 116
Msa0692540 MtrunA17_Chr4g0051881 45.570 79 40 2 131 209 165 240 5.63e-14 72.4
Msa0692540 MtrunA17_Chr1g0194481 48.696 115 56 1 227 338 104 218 3.97e-29 115
Msa0692540 MtrunA17_Chr1g0194481 53.125 64 30 0 145 208 158 221 1.50e-16 79.7
Msa0692540 MtrunA17_Chr7g0270191 62.025 79 30 0 265 343 132 210 1.79e-28 112
Msa0692540 MtrunA17_Chr7g0270191 42.000 100 57 1 109 208 110 208 6.55e-16 77.8
Msa0692540 MtrunA17_Chr8g0335811 57.647 85 35 1 259 343 135 218 4.76e-28 110
Msa0692540 MtrunA17_Chr8g0335811 51.429 70 31 1 132 201 144 210 2.01e-14 72.0
Msa0692540 MtrunA17_Chr5g0443131 61.842 76 29 0 264 339 143 218 8.13e-28 111
Msa0692540 MtrunA17_Chr5g0443131 51.667 60 29 0 145 204 157 216 1.17e-14 73.9
Msa0692540 MtrunA17_Chr3g0129361 47.115 104 43 1 261 364 127 218 1.19e-27 108
Msa0692540 MtrunA17_Chr3g0129361 54.386 57 26 0 145 201 144 200 1.77e-14 72.0
Msa0692540 MtrunA17_Chr8g0383351 52.747 91 38 2 261 346 142 232 2.60e-26 105
Msa0692540 MtrunA17_Chr8g0383351 51.471 68 32 1 134 201 150 216 8.68e-16 76.3
Msa0692540 MtrunA17_Chr7g0224801 56.250 80 35 0 269 348 84 163 2.67e-26 103
Msa0692540 MtrunA17_Chr7g0224801 50.649 77 32 2 145 221 93 163 4.04e-16 75.5
Msa0692540 MtrunA17_Chr2g0294231 59.740 77 31 0 263 339 188 264 3.94e-26 108
Msa0692540 MtrunA17_Chr2g0294231 48.750 80 40 1 129 208 188 266 5.95e-17 81.6
Msa0692540 MtrunA17_Chr5g0418781 57.895 76 32 0 259 334 105 180 1.97e-25 104
Msa0692540 MtrunA17_Chr5g0418781 44.872 78 40 1 145 219 124 201 2.13e-15 75.9
Msa0692540 MtrunA17_Chr8g0386241 47.253 91 48 0 259 349 84 174 5.77e-25 100
Msa0692540 MtrunA17_Chr8g0386241 54.386 57 26 0 145 201 103 159 3.15e-15 73.2
Msa0692540 MtrunA17_Chr8g0383251 45.098 102 43 1 236 337 79 167 1.12e-24 99.8
Msa0692540 MtrunA17_Chr8g0383251 49.206 63 32 0 145 207 108 170 6.71e-12 63.9
Msa0692540 MtrunA17_Chr4g0068541 56.757 74 32 0 265 338 195 268 3.02e-23 100
Msa0692540 MtrunA17_Chr4g0068541 55.000 60 27 0 145 204 208 267 1.68e-16 80.5
Msa0692540 MtrunA17_Chr7g0248721 43.333 120 67 1 215 334 78 196 4.28e-23 96.3
Msa0692540 MtrunA17_Chr7g0248721 51.613 62 29 1 140 201 136 196 1.27e-13 69.7
Msa0692540 MtrunA17_Chr6g0485431 56.000 75 32 1 264 337 140 214 1.06e-22 98.2
Msa0692540 MtrunA17_Chr6g0485431 45.833 72 37 2 138 208 148 218 5.81e-13 69.7
Msa0692540 MtrunA17_Chr1g0147881 50.505 99 37 3 242 339 237 324 1.10e-22 97.8
Msa0692540 MtrunA17_Chr1g0150801 52.778 72 34 0 263 334 87 158 1.27e-22 93.6
Msa0692540 MtrunA17_Chr1g0150801 50.877 57 28 0 145 201 102 158 2.89e-13 67.4
Msa0692540 MtrunA17_Chr3g0129321 52.000 75 36 0 264 338 104 178 1.38e-22 94.7
Msa0692540 MtrunA17_Chr3g0129321 36.364 143 68 3 107 226 62 204 6.11e-15 73.2
Msa0692540 MtrunA17_Chr1g0189391 49.462 93 46 1 265 356 84 176 1.69e-22 97.1
Msa0692540 MtrunA17_Chr1g0189391 42.857 77 38 2 145 215 97 173 2.51e-11 64.3
Msa0692540 MtrunA17_Chr7g0270831 46.809 94 49 1 249 341 187 280 1.69e-22 98.6
Msa0692540 MtrunA17_Chr4g0025061 49.383 81 40 1 260 339 342 422 7.38e-22 97.4
Msa0692540 MtrunA17_Chr4g0025061 33.588 131 65 4 121 230 318 447 5.25e-11 64.3
Msa0692540 MtrunA17_Chr3g0099641 47.561 82 42 1 257 337 230 311 1.11e-21 96.3
Msa0692540 MtrunA17_Chr3g0099641 42.500 80 43 2 146 222 252 331 4.11e-11 64.3
Msa0692540 MtrunA17_Chr2g0288871 50.633 79 38 1 260 337 287 365 1.23e-21 96.7
Msa0692540 MtrunA17_Chr4g0075201 49.383 81 40 1 260 339 249 329 3.21e-21 95.1
Msa0692540 MtrunA17_Chr2g0322391 49.383 81 40 1 260 339 331 411 4.22e-21 95.1
Msa0692540 MtrunA17_Chr2g0322391 40.741 81 45 2 145 222 349 429 3.55e-11 64.7
Msa0692540 MtrunA17_Chr4g0060271 51.316 76 36 1 263 337 240 315 7.46e-21 94.4
Msa0692540 MtrunA17_Chr4g0060271 49.180 61 30 1 145 204 255 315 6.07e-11 63.9
Msa0692540 MtrunA17_Chr4g0051181 50.649 77 37 1 263 338 228 304 1.72e-20 92.8
Msa0692540 MtrunA17_Chr2g0302391 43.617 94 52 1 263 355 196 289 5.05e-20 91.3
Msa0692540 MtrunA17_Chr7g0216891 41.228 114 63 3 225 334 163 276 6.28e-20 91.7
Msa0692540 MtrunA17_Chr4g0071521 47.312 93 37 3 243 334 221 302 1.42e-19 88.6
Msa0692540 MtrunA17_Chr2g0333851 43.689 103 42 3 263 349 139 241 1.95e-19 88.2
Msa0692540 MtrunA17_Chr2g0333851 48.529 68 34 1 146 212 170 237 5.37e-13 69.3
Msa0692540 MtrunA17_Chr5g0401821 52.000 75 35 1 275 348 196 270 2.80e-19 87.0
Msa0692540 MtrunA17_Chr3g0136961 48.837 86 38 4 255 334 110 195 3.00e-19 87.4
Msa0692540 MtrunA17_Chr3g0136961 47.222 72 36 2 146 215 139 210 5.98e-12 65.9
Msa0692540 MtrunA17_Chr4g0025051 46.914 81 42 1 260 339 317 397 4.52e-19 89.0
Msa0692540 MtrunA17_Chr4g0053281 46.739 92 45 2 259 349 250 338 4.93e-19 87.4
Msa0692540 MtrunA17_Chr7g0270051 52.857 70 32 1 279 347 54 123 6.75e-19 85.5
Msa0692540 MtrunA17_Chr7g0270051 39.535 86 44 3 139 218 42 125 2.29e-11 63.9
Msa0692540 MtrunA17_Chr5g0432071 42.969 128 64 5 120 240 79 204 7.54e-19 84.3
Msa0692540 MtrunA17_Chr5g0432071 46.914 81 41 2 278 358 104 182 7.43e-15 73.2
Msa0692540 MtrunA17_Chr7g0238921 59.322 59 24 0 276 334 122 180 8.97e-19 86.3
Msa0692540 MtrunA17_Chr7g0238921 54.386 57 26 0 145 201 124 180 2.24e-14 73.6
Msa0692540 MtrunA17_Chr1g0184691 46.591 88 45 2 258 343 273 360 1.52e-18 86.3
Msa0692540 MtrunA17_Chr2g0284321 47.059 85 42 2 279 362 36 118 5.41e-18 82.0
Msa0692540 MtrunA17_Chr2g0284321 35.043 117 65 3 125 232 7 121 9.66e-12 63.9
Msa0692540 MtrunA17_Chr1g0150281 46.341 82 38 3 259 334 116 197 5.50e-18 83.6
Msa0692540 MtrunA17_Chr8g0379461 51.515 66 31 1 279 343 77 142 6.62e-18 82.4
Msa0692540 MtrunA17_Chr2g0293481 41.584 101 52 2 241 340 236 330 9.94e-18 84.7
Msa0692540 MtrunA17_Chr1g0188961 61.111 54 21 0 298 351 3 56 1.27e-17 76.6
Msa0692540 MtrunA17_Chr8g0387501 40.385 104 53 3 277 371 128 231 4.38e-17 80.5
Msa0692540 MtrunA17_Chr8g0387501 45.455 66 35 1 140 204 124 189 3.70e-12 66.2
Msa0692540 MtrunA17_Chr2g0319961 51.389 72 32 2 279 349 81 150 5.45e-17 80.1
Msa0692540 MtrunA17_Chr4g0024391 37.363 91 56 1 250 339 201 291 6.41e-17 82.0
Msa0692540 MtrunA17_Chr7g0248691 46.154 91 46 3 251 340 129 217 1.36e-16 80.1
Msa0692540 MtrunA17_Chr7g0248691 39.506 81 48 1 125 204 134 214 5.20e-12 66.2
Msa0692540 MtrunA17_Chr4g0001361 52.381 63 29 1 276 337 160 222 1.38e-16 79.7
Msa0692540 MtrunA17_Chr4g0001361 50.000 60 29 1 146 204 163 222 1.27e-11 65.1
Msa0692540 MtrunA17_Chr1g0202461 46.753 77 39 2 265 340 249 324 2.06e-16 80.1
Msa0692540 MtrunA17_Chr1g0202461 41.176 68 39 1 138 204 254 321 1.02e-11 65.9
Msa0692540 MtrunA17_Chr7g0228941 44.156 77 40 2 259 334 35 109 3.56e-16 74.3
Msa0692540 MtrunA17_Chr7g0228941 44.828 58 31 1 146 202 53 110 6.29e-11 59.7
Msa0692540 MtrunA17_Chr2g0289181 49.275 69 34 1 275 342 11 79 6.71e-16 76.6
Msa0692540 MtrunA17_Chr2g0289181 39.796 98 47 3 141 235 10 98 2.64e-11 63.2
Msa0692540 MtrunA17_Chr8g0348311 38.938 113 61 4 249 359 128 234 7.22e-16 78.2
Msa0692540 MtrunA17_Chr8g0348311 42.466 73 41 1 133 204 143 215 1.97e-12 67.8
Msa0692540 MtrunA17_Chr1g0188971 50.633 79 35 2 224 298 4 82 1.20e-15 71.6
Msa0692540 MtrunA17_Chr1g0150271 40.698 86 47 3 256 337 76 161 3.62e-15 74.7
Msa0692540 MtrunA17_Chr3g0139021 47.619 63 32 1 274 335 310 372 7.38e-14 72.4
Msa0692540 MtrunA17_Chr3g0126391 51.724 58 25 1 145 199 133 190 2.16e-13 70.9
Msa0692540 MtrunA17_Chr3g0126391 49.153 59 27 1 277 332 132 190 2.14e-11 64.7
Msa0692540 MtrunA17_Chr8g0347251 50.000 58 26 1 145 199 136 193 2.42e-13 70.5
Msa0692540 MtrunA17_Chr7g0275531 44.928 69 33 2 145 208 118 186 3.74e-13 69.7
Msa0692540 MtrunA17_Chr8g0387981 43.056 72 38 1 131 199 118 189 4.54e-13 69.7
Msa0692540 MtrunA17_Chr8g0387981 53.448 58 24 1 278 332 132 189 4.24e-12 67.0
Msa0692540 MtrunA17_Chr2g0315361 38.462 104 58 3 232 332 105 205 1.71e-12 67.8
Msa0692540 MtrunA17_Chr5g0419241 51.111 45 22 0 260 304 59 103 5.33e-12 62.0
Msa0692540 MtrunA17_Chr7g0244981 48.276 58 27 1 278 332 122 179 4.82e-11 63.2
Msa0692540 MtrunA17_Chr2g0315381 38.542 96 44 3 276 361 142 232 7.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692540 AT1G13960.1 44.082 490 143 14 12 384 37 512 1.50e-103 315
Msa0692540 AT2G03340.1 50.263 380 122 13 60 385 146 512 1.94e-102 312
Msa0692540 AT1G13960.2 49.459 370 115 11 73 384 4 359 2.32e-93 284
Msa0692540 AT3G01080.2 42.369 439 182 15 1 385 38 459 8.44e-85 265
Msa0692540 AT3G01080.1 41.627 418 177 14 1 385 38 421 5.02e-78 247
Msa0692540 AT5G07100.1 43.599 289 126 5 68 340 29 296 2.35e-72 228
Msa0692540 AT5G07100.1 48.750 80 40 1 129 208 219 297 2.45e-15 76.6
Msa0692540 AT5G07100.1 38.947 95 47 1 264 347 92 186 5.52e-14 72.4
Msa0692540 AT5G07100.2 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0692540 AT5G07100.2 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0692540 AT5G07100.2 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0692540 AT5G07100.4 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0692540 AT5G07100.4 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0692540 AT5G07100.4 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0692540 AT5G07100.5 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0692540 AT5G07100.5 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0692540 AT5G07100.5 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0692540 AT5G07100.3 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa0692540 AT5G07100.3 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa0692540 AT5G07100.3 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa0692540 AT4G26640.1 44.891 274 102 6 116 343 104 374 3.40e-69 226
Msa0692540 AT4G26640.1 51.351 74 34 2 276 348 137 209 1.41e-14 75.5
Msa0692540 AT4G26640.5 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0692540 AT4G26640.5 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0692540 AT4G26640.6 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0692540 AT4G26640.6 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0692540 AT4G26640.4 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0692540 AT4G26640.4 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0692540 AT4G26640.3 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa0692540 AT4G26640.3 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa0692540 AT4G26640.7 44.891 274 102 6 116 343 136 406 4.17e-69 226
Msa0692540 AT4G26640.7 51.351 74 34 2 276 348 169 241 1.37e-14 75.5
Msa0692540 AT4G26640.2 44.891 274 102 6 116 343 176 446 1.25e-68 226
Msa0692540 AT4G26640.2 51.351 74 34 2 276 348 209 281 1.55e-14 75.5
Msa0692540 AT2G38470.1 49.225 258 82 7 145 354 184 440 8.79e-67 220
Msa0692540 AT2G30250.1 41.869 289 131 7 87 339 102 389 4.57e-61 202
Msa0692540 AT2G04880.2 43.320 247 95 6 141 345 107 350 6.28e-54 185
Msa0692540 AT2G04880.2 44.565 92 49 2 122 213 262 351 5.34e-15 76.6
Msa0692540 AT4G30935.1 37.013 308 142 9 76 340 95 393 1.31e-46 166
Msa0692540 AT4G30935.1 50.794 63 31 0 146 208 332 394 2.43e-12 68.6
Msa0692540 AT5G56270.1 73.469 98 26 0 243 340 452 549 3.04e-43 160
Msa0692540 AT5G56270.1 67.188 64 20 1 145 208 273 335 3.83e-22 99.0
Msa0692540 AT5G56270.1 61.667 60 22 1 278 337 273 331 3.21e-16 80.9
Msa0692540 AT5G56270.1 51.316 76 36 1 129 204 472 546 1.77e-14 75.5
Msa0692540 AT4G12020.11 38.662 269 115 7 73 298 400 661 2.79e-40 152
Msa0692540 AT4G12020.11 50.820 61 29 1 277 337 467 526 3.87e-12 68.6
Msa0692540 AT4G12020.10 38.662 269 115 7 73 298 400 661 3.29e-40 152
Msa0692540 AT4G12020.10 50.820 61 29 1 277 337 467 526 3.27e-12 68.9
Msa0692540 AT4G12020.3 38.662 269 115 7 73 298 400 661 3.29e-40 152
Msa0692540 AT4G12020.3 50.820 61 29 1 277 337 467 526 3.30e-12 68.9
Msa0692540 AT4G12020.1 38.662 269 115 7 73 298 400 661 3.45e-40 152
Msa0692540 AT4G12020.1 50.820 61 29 1 277 337 467 526 3.14e-12 68.9
Msa0692540 AT4G12020.9 38.662 269 115 7 73 298 400 661 3.45e-40 152
Msa0692540 AT4G12020.9 50.820 61 29 1 277 337 467 526 3.14e-12 68.9
Msa0692540 AT4G12020.7 38.662 269 115 7 73 298 400 661 3.51e-40 152
Msa0692540 AT4G12020.7 50.820 61 29 1 277 337 467 526 3.22e-12 68.9
Msa0692540 AT4G12020.6 38.662 269 115 7 73 298 400 661 3.54e-40 152
Msa0692540 AT4G12020.6 50.820 61 29 1 277 337 467 526 3.10e-12 68.9
Msa0692540 AT4G12020.8 38.662 269 115 7 73 298 400 661 3.54e-40 152
Msa0692540 AT4G12020.8 50.820 61 29 1 277 337 467 526 3.10e-12 68.9
Msa0692540 AT4G12020.2 38.662 269 115 7 73 298 400 661 3.66e-40 152
Msa0692540 AT4G12020.2 50.820 61 29 1 277 337 467 526 3.49e-12 68.9
Msa0692540 AT4G12020.5 38.662 269 115 7 73 298 333 594 4.06e-40 152
Msa0692540 AT4G12020.5 50.820 61 29 1 277 337 400 459 3.59e-12 68.9
Msa0692540 AT4G12020.4 38.662 269 115 7 73 298 400 661 4.25e-40 152
Msa0692540 AT4G12020.4 50.820 61 29 1 277 337 467 526 3.58e-12 68.9
Msa0692540 AT4G26440.1 67.647 102 33 0 243 344 337 438 2.03e-39 148
Msa0692540 AT4G26440.1 37.725 167 84 5 61 215 89 247 9.74e-24 103
Msa0692540 AT4G26440.1 56.667 60 25 1 278 337 178 236 9.53e-15 76.3
Msa0692540 AT4G26440.1 50.685 73 33 1 132 204 362 431 7.97e-14 73.6
Msa0692540 AT2G04880.1 53.509 114 49 3 234 345 263 374 4.30e-32 126
Msa0692540 AT2G04880.1 45.055 91 49 1 141 231 107 196 1.64e-17 84.3
Msa0692540 AT2G04880.1 54.688 64 28 1 276 339 109 171 1.09e-15 79.0
Msa0692540 AT2G04880.1 44.565 92 49 2 122 213 286 375 5.38e-15 76.6
Msa0692540 AT3G01080.3 39.407 236 103 10 1 205 38 264 7.03e-32 123
Msa0692540 AT3G01080.3 56.667 60 25 1 278 337 205 263 1.11e-14 74.7
Msa0692540 AT4G18170.1 64.474 76 27 0 263 338 157 232 1.82e-29 116
Msa0692540 AT4G18170.1 44.318 88 46 2 122 209 150 234 6.69e-14 72.4
Msa0692540 AT1G29860.1 64.000 75 27 0 265 339 123 197 2.69e-29 115
Msa0692540 AT1G29860.1 52.308 65 29 1 145 209 136 198 6.38e-14 72.0
Msa0692540 AT5G46350.1 61.039 77 30 0 264 340 169 245 2.23e-28 113
Msa0692540 AT5G46350.1 51.667 60 29 0 145 204 183 242 4.73e-13 70.1
Msa0692540 AT2G44745.1 56.471 85 36 1 259 343 126 209 4.72e-28 110
Msa0692540 AT2G44745.1 51.429 70 31 1 132 201 135 201 1.38e-14 72.8
Msa0692540 AT2G37260.3 48.092 131 55 2 222 350 222 341 5.19e-28 113
Msa0692540 AT2G37260.3 68.750 64 19 1 141 204 81 143 3.01e-23 99.8
Msa0692540 AT2G37260.3 57.377 61 25 1 279 339 86 145 1.20e-14 75.1
Msa0692540 AT2G37260.3 49.123 57 29 0 145 201 269 325 2.99e-11 64.7
Msa0692540 AT2G37260.2 48.092 131 55 2 222 350 220 339 5.33e-28 113
Msa0692540 AT2G37260.2 68.750 64 19 1 141 204 79 141 2.99e-23 99.8
Msa0692540 AT2G37260.2 57.377 61 25 1 279 339 84 143 1.22e-14 74.7
Msa0692540 AT2G37260.2 49.123 57 29 0 145 201 267 323 2.96e-11 64.7
Msa0692540 AT2G37260.1 48.092 131 55 2 222 350 302 421 1.10e-27 113
Msa0692540 AT2G37260.1 68.750 64 19 1 141 204 161 223 4.86e-23 100
Msa0692540 AT2G37260.1 57.377 61 25 1 279 339 166 225 1.45e-14 75.1
Msa0692540 AT2G37260.1 49.123 57 29 0 145 201 349 405 3.38e-11 65.1
Msa0692540 AT5G13080.1 52.381 84 40 0 265 348 54 137 2.48e-27 105
Msa0692540 AT5G13080.1 51.429 70 31 1 132 201 57 123 7.44e-16 74.7
Msa0692540 AT1G64000.1 60.526 76 30 0 259 334 95 170 3.33e-27 107
Msa0692540 AT1G64000.1 52.459 61 29 0 141 201 110 170 6.42e-14 70.5
Msa0692540 AT5G49520.1 64.384 73 26 0 265 337 208 280 4.66e-27 111
Msa0692540 AT5G49520.1 46.053 76 40 1 129 204 206 280 5.32e-15 76.3
Msa0692540 AT1G69310.4 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa0692540 AT1G69310.4 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa0692540 AT1G69310.2 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa0692540 AT1G69310.2 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa0692540 AT1G69310.1 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa0692540 AT1G69310.1 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa0692540 AT4G39410.1 59.211 76 31 0 259 334 204 279 6.49e-27 109
Msa0692540 AT4G39410.1 50.000 70 32 1 145 214 223 289 1.36e-14 74.3
Msa0692540 AT2G47260.1 63.014 73 27 0 265 337 161 233 8.27e-27 109
Msa0692540 AT2G47260.1 47.500 80 41 1 129 208 159 237 2.17e-15 77.0
Msa0692540 AT5G41570.1 60.526 76 30 0 259 334 79 154 1.96e-26 104
Msa0692540 AT5G41570.1 52.459 61 29 0 141 201 94 154 1.49e-13 68.9
Msa0692540 AT3G01970.1 54.762 84 38 0 265 348 52 135 5.29e-26 102
Msa0692540 AT3G01970.1 50.000 76 35 1 132 207 55 127 2.86e-15 72.8
Msa0692540 AT2G46130.1 56.579 76 33 0 259 334 11 86 2.69e-25 99.4
Msa0692540 AT2G46130.1 50.877 57 28 0 145 201 30 86 3.37e-13 65.9
Msa0692540 AT1G55600.1 61.728 81 31 0 259 339 288 368 5.39e-25 106
Msa0692540 AT1G55600.1 46.667 75 39 1 130 204 293 366 6.60e-12 67.4
Msa0692540 AT4G04450.2 44.068 118 60 3 249 363 169 283 1.17e-24 105
Msa0692540 AT5G26170.1 55.714 70 31 0 265 334 100 169 1.73e-24 99.4
Msa0692540 AT5G26170.1 50.877 57 28 0 145 201 113 169 1.23e-12 66.2
Msa0692540 AT4G04450.1 44.068 118 60 3 249 363 263 377 3.39e-24 104
Msa0692540 AT3G62340.1 43.220 118 61 1 264 375 104 221 4.76e-24 100
Msa0692540 AT3G62340.1 55.000 60 27 0 145 204 118 177 1.37e-14 73.9
Msa0692540 AT2G21900.1 50.000 76 35 1 267 339 95 170 1.23e-22 95.1
Msa0692540 AT2G21900.1 45.205 73 40 0 132 204 96 168 6.51e-15 73.6
Msa0692540 AT5G15130.2 46.809 94 46 2 261 353 168 258 3.23e-22 98.6
Msa0692540 AT5G15130.1 46.809 94 46 2 261 353 210 300 3.48e-22 98.6
Msa0692540 AT1G69310.3 55.128 78 31 1 257 334 126 199 4.06e-22 95.5
Msa0692540 AT1G69310.3 50.000 58 25 1 145 202 147 200 1.75e-11 64.7
Msa0692540 AT4G22070.4 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0692540 AT4G22070.3 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0692540 AT4G22070.2 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0692540 AT4G22070.1 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa0692540 AT1G68150.1 45.000 100 54 1 263 361 220 319 7.52e-22 96.3
Msa0692540 AT1G62300.1 50.633 79 38 1 260 337 294 372 2.79e-21 95.9
Msa0692540 AT5G64810.1 50.704 71 35 0 265 335 97 167 3.36e-21 90.9
Msa0692540 AT5G64810.1 48.276 58 30 0 145 202 110 167 9.20e-12 64.3
Msa0692540 AT2G46130.2 52.632 76 32 1 259 334 11 82 1.38e-20 86.3
Msa0692540 AT4G31550.2 46.535 101 42 3 243 342 221 310 7.15e-20 89.7
Msa0692540 AT4G31550.1 50.588 85 38 2 259 342 230 311 8.37e-20 89.7
Msa0692540 AT4G01720.1 52.632 76 35 1 263 337 224 299 8.46e-20 91.3
Msa0692540 AT1G18860.1 46.988 83 43 1 256 337 217 299 2.34e-19 90.1
Msa0692540 AT2G34830.1 41.584 101 52 2 241 340 184 278 9.48e-19 87.8
Msa0692540 AT4G23550.1 44.944 89 45 2 265 352 127 212 1.02e-18 86.3
Msa0692540 AT4G23550.1 48.333 60 30 1 146 204 141 200 2.33e-12 67.8
Msa0692540 AT2G34830.2 41.584 101 52 2 241 340 193 287 1.02e-18 87.8
Msa0692540 AT2G30590.1 48.718 78 39 1 258 334 293 370 1.40e-18 87.0
Msa0692540 AT2G25000.2 51.429 70 32 2 272 339 96 165 1.50e-18 84.3
Msa0692540 AT2G25000.2 47.619 63 32 1 146 207 104 166 1.15e-11 64.7
Msa0692540 AT2G25000.4 51.429 70 32 2 272 339 96 165 1.50e-18 84.3
Msa0692540 AT2G25000.4 47.619 63 32 1 146 207 104 166 1.15e-11 64.7
Msa0692540 AT4G31800.2 52.113 71 32 2 271 339 103 173 1.51e-18 84.7
Msa0692540 AT1G30650.1 41.584 101 52 2 241 340 186 280 2.45e-18 86.7
Msa0692540 AT4G31800.1 52.113 71 32 2 271 339 168 238 2.52e-18 85.1
Msa0692540 AT2G25000.3 51.429 70 32 2 272 339 118 187 2.90e-18 84.0
Msa0692540 AT2G25000.3 47.619 63 32 1 146 207 126 188 1.47e-11 64.7
Msa0692540 AT2G25000.1 51.429 70 32 2 272 339 139 208 4.36e-18 84.0
Msa0692540 AT2G25000.1 47.619 63 32 1 146 207 147 209 2.03e-11 64.3
Msa0692540 AT2G23320.1 48.101 79 37 2 259 336 224 299 4.93e-18 84.3
Msa0692540 AT1G80840.1 51.562 64 30 1 276 338 144 207 6.88e-18 84.0
Msa0692540 AT1G80840.1 49.275 69 32 2 146 213 147 213 9.29e-13 68.9
Msa0692540 AT1G29280.1 41.584 101 52 2 238 337 40 134 8.25e-18 82.8
Msa0692540 AT2G24570.1 50.649 77 34 2 259 334 227 300 2.38e-17 82.4
Msa0692540 AT3G58710.2 41.284 109 55 3 243 348 41 143 2.40e-17 81.6
Msa0692540 AT5G28650.1 40.777 103 49 3 243 344 238 329 3.41e-17 82.4
Msa0692540 AT4G01250.1 55.556 63 27 1 276 337 126 188 3.78e-17 81.6
Msa0692540 AT4G01250.1 42.466 73 41 1 133 204 116 188 4.47e-12 66.6
Msa0692540 AT4G24240.1 42.105 95 43 3 243 336 257 340 4.41e-17 82.0
Msa0692540 AT3G58710.1 38.406 138 69 5 224 348 10 144 4.47e-17 80.9
Msa0692540 AT3G04670.1 40.777 103 49 3 243 344 238 329 6.02e-17 81.6
Msa0692540 AT5G43290.1 55.932 59 26 0 276 334 112 170 1.18e-16 79.7
Msa0692540 AT5G43290.1 40.625 96 47 1 145 230 114 209 7.79e-14 71.6
Msa0692540 AT5G52830.1 49.254 67 33 1 275 340 162 228 2.20e-15 77.0
Msa0692540 AT5G52830.1 44.000 75 39 2 133 204 151 225 4.75e-13 70.1
Msa0692540 AT1G69810.2 40.000 95 53 3 261 353 128 220 2.33e-15 77.0
Msa0692540 AT1G69810.1 40.000 95 53 3 261 353 186 278 3.34e-15 77.0
Msa0692540 AT5G45050.2 52.381 63 29 1 279 340 1153 1215 3.60e-15 78.2
Msa0692540 AT5G45050.4 52.381 63 29 1 279 340 1042 1104 3.76e-15 77.8
Msa0692540 AT5G45050.1 52.381 63 29 1 279 340 1181 1243 3.82e-15 77.8
Msa0692540 AT3G56400.1 33.094 139 85 3 215 345 56 194 2.26e-14 73.6
Msa0692540 AT4G23810.1 38.710 93 47 2 110 199 130 215 6.84e-14 72.4
Msa0692540 AT1G66560.1 50.000 58 26 1 278 332 103 160 3.81e-13 69.3
Msa0692540 AT5G45260.1 40.659 91 48 3 128 214 1192 1280 6.12e-13 71.2
Msa0692540 AT4G11070.2 33.913 115 64 3 90 199 59 166 2.26e-12 67.4
Msa0692540 AT5G24110.1 46.032 63 31 1 140 199 108 170 2.55e-12 67.4
Msa0692540 AT4G11070.1 33.913 115 64 3 90 199 91 198 3.15e-12 67.4
Msa0692540 AT2G46400.1 37.634 93 52 2 256 342 82 174 1.97e-11 64.7
Msa0692540 AT2G46400.1 44.828 58 29 1 145 199 104 161 8.21e-11 62.8
Msa0692540 AT2G40740.1 43.750 64 33 1 139 199 167 230 3.22e-11 63.9
Msa0692540 AT2G40740.3 43.750 64 33 1 139 199 176 239 4.64e-11 63.5
Msa0692540 AT1G66550.2 45.614 57 28 1 279 332 104 160 8.93e-11 62.4
Msa0692540 AT1G66550.1 45.614 57 28 1 279 332 109 165 9.44e-11 62.4

Find 121 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTCACAAGTAATCTTTA+AGG 0.158601 4_4:+61165847 Msa0692540:three_prime_UTR
ATACCAGAAATTGGACTTAT+AGG 0.211823 4_4:-61165918 None:intergenic
ATATGTAATCACCTTGGATA+TGG 0.279577 4_4:-61165064 None:intergenic
TATGTTGTCAATACAGCTTT+AGG 0.290861 4_4:-61165602 None:intergenic
GACATTTAATATGTAATTGA+TGG 0.297151 4_4:+61161015 Msa0692540:five_prime_UTR
AGAAAATGTATTGGTCTCTT+AGG 0.303525 4_4:+61166054 Msa0692540:three_prime_UTR
AGGCCTATAAGTCCAATTTC+TGG 0.306456 4_4:+61165915 Msa0692540:three_prime_UTR
TGGTGGCATGTTTGGCTTCA+TGG 0.315986 4_4:+61166155 Msa0692540:three_prime_UTR
GTAACTGCAATTATTTATAA+AGG 0.324911 4_4:+61164459 Msa0692540:CDS
GGAGGAGGAGGAAGAGGTGG+TGG 0.331770 4_4:+61161510 Msa0692540:CDS
GTGGAGCATGGAGGAGGAGG+AGG 0.338095 4_4:+61161492 Msa0692540:CDS
GAAGAATACTCAACAGAGTT+TGG 0.345418 4_4:-61164246 None:intergenic
ATACCACTTGGTGGGGAGTT+TGG 0.346229 4_4:-61166088 None:intergenic
TATGTGAAAGGGATGGATTC+AGG 0.348558 4_4:-61164934 None:intergenic
GAGCATGGAGGAGGAGGAGG+AGG 0.360875 4_4:+61161495 Msa0692540:CDS
ACTTTGCTTTCCAACTTGTT+TGG 0.361900 4_4:+61161414 Msa0692540:CDS
AAGGGATGGATTCAGGAGTT+TGG 0.372111 4_4:-61164927 None:intergenic
GGAAATGGAGAGTGGCCTTC+AGG 0.377893 4_4:+61161366 Msa0692540:CDS
ATGTTATTGAATGTTATTGA+TGG 0.379882 4_4:-61164207 None:intergenic
GGTACTGATGATGCAGAAAA+TGG 0.388413 4_4:-61164159 None:intergenic
GGATATAGATGGCGCAAATA+CGG 0.389091 4_4:+61165019 Msa0692540:CDS
CGATGACTGCAAGTCTTTCT+CGG 0.393658 4_4:+61161443 Msa0692540:CDS
GGATACAACTGGAGGAAGTA+TGG 0.398456 4_4:+61164330 Msa0692540:CDS
TGAATGGTTGGAGGTGGAAA+TGG 0.401101 4_4:+61161351 Msa0692540:exon
CAGAAAATGGATGTTCAGAT+TGG 0.408171 4_4:-61164146 None:intergenic
TTCTTCTGTGAATGTTGATA+AGG 0.409082 4_4:+61164296 Msa0692540:CDS
AACAAGTGATGTGGATCTCT+TGG 0.410616 4_4:+61164991 Msa0692540:CDS
AAGTTATATACGTGAAAGAT+AGG 0.420840 4_4:+61161126 Msa0692540:five_prime_UTR
GATGTGGAGCATGGAGGAGG+AGG 0.427310 4_4:+61161489 Msa0692540:CDS
TCAATAAAGTTGTGAATGGT+TGG 0.429419 4_4:+61161339 Msa0692540:exon
ATAATGAATGGTGGCATGTT+TGG 0.430028 4_4:+61166147 Msa0692540:three_prime_UTR
GGAGGAGGAAGAGGTGGTGG+TGG 0.430075 4_4:+61161513 Msa0692540:CDS
GGAGGATTATGAGTGAATTC+AGG 0.431837 4_4:+61166176 Msa0692540:three_prime_UTR
ATAGGCCTTGGTCAAAACTT+TGG 0.438403 4_4:-61165900 None:intergenic
CAACTCCGGGTTGCAATGTT+CGG 0.442776 4_4:+61165552 Msa0692540:CDS
GAAAGATAGGAGAAGATTGC+AGG 0.443121 4_4:+61161139 Msa0692540:five_prime_UTR
CGCTGGCGACACGTTGGATG+TGG 0.455395 4_4:+61161473 Msa0692540:CDS
TCTTTCTCGGAGCTCCTCGC+TGG 0.459203 4_4:+61161456 Msa0692540:CDS
GAAATTGGACTTATAGGCCT+TGG 0.463448 4_4:-61165912 None:intergenic
TTGTCGTTTGTGAGCTTGCT+AGG 0.468818 4_4:-61164507 None:intergenic
GATATAGATGGCGCAAATAC+GGG 0.472441 4_4:+61165020 Msa0692540:CDS
GGAGAGTGGCCTTCAGGTGG+GGG 0.472624 4_4:+61161372 Msa0692540:CDS
TTGTGAGCTTGCTAGGACGT+GGG 0.474026 4_4:-61164500 None:intergenic
GAAAGAGTGAGAGTGTATCT+AGG 0.486124 4_4:+61166123 Msa0692540:three_prime_UTR
CATGTTCACTTCTCCACCTC+AGG 0.493399 4_4:+61161551 Msa0692540:CDS
TTTGTGAGCTTGCTAGGACG+TGG 0.506084 4_4:-61164501 None:intergenic
TATGTAATCACCTTGGATAT+GGG 0.509899 4_4:-61165063 None:intergenic
CCTTACCTTCTCTTGAGACC+AGG 0.513180 4_4:-61164609 None:intergenic
ATAATCAATAAAGTTGTGAA+TGG 0.514219 4_4:+61161335 Msa0692540:exon
GTTGAACGCGATCCTGTAGA+TGG 0.515499 4_4:+61164432 Msa0692540:CDS
ATGGAGAGTGGCCTTCAGGT+GGG 0.518947 4_4:+61161370 Msa0692540:CDS
CTTAGATGTGCCACTGCTGA+AGG 0.520698 4_4:-61165755 None:intergenic
GTGCACTTGTAATAACTTCG+AGG 0.523109 4_4:-61164381 None:intergenic
TCTTGGAGGATGGATATAGA+TGG 0.523927 4_4:+61165008 Msa0692540:CDS
ATGCACTATTATTGCTAGCA+AGG 0.524276 4_4:-61165676 None:intergenic
GCTGTATTGACAACATATGA+AGG 0.524886 4_4:+61165608 Msa0692540:CDS
ACAAGTGACAGTGAGGAAGA+AGG 0.529857 4_4:+61164558 Msa0692540:CDS
GAAGATTGCAGGCATAGCAT+AGG 0.533234 4_4:+61161150 Msa0692540:five_prime_UTR
CTATTACAAATGCACAACTC+CGG 0.535365 4_4:+61165538 Msa0692540:CDS
TATTGGTCTCTTAGGAGTAA+TGG 0.535384 4_4:+61166062 Msa0692540:three_prime_UTR
TGACTGTTAGTCTTAGCTGC+TGG 0.535682 4_4:-61165650 None:intergenic
AGCTAAGCATACCACTTGGT+GGG 0.536456 4_4:-61166096 None:intergenic
GAGAGTGGCCTTCAGGTGGG+GGG 0.537568 4_4:+61161373 Msa0692540:CDS
TTGAGACAGTCCTATGTGAA+AGG 0.538082 4_4:-61164946 None:intergenic
TATTACAAATGCACAACTCC+GGG 0.539125 4_4:+61165539 Msa0692540:CDS
GAAAGCAAAGTCATGGGACC+TGG 0.539402 4_4:-61161402 None:intergenic
CAAGTTGGAAAGCAAAGTCA+TGG 0.540093 4_4:-61161409 None:intergenic
CTAATGACGACGGATACAAC+TGG 0.541447 4_4:+61164319 Msa0692540:CDS
AATGGAGAGTGGCCTTCAGG+TGG 0.546609 4_4:+61161369 Msa0692540:CDS
ATCGTTGTCACCAAACAAGT+TGG 0.548706 4_4:-61161424 None:intergenic
GCAGTTACATGACCATCTAC+AGG 0.555080 4_4:-61164444 None:intergenic
TGAGACAGTCCTATGTGAAA+GGG 0.555370 4_4:-61164945 None:intergenic
TGGAGAGTGGCCTTCAGGTG+GGG 0.556179 4_4:+61161371 Msa0692540:CDS
TTGGATGTGGAGCATGGAGG+AGG 0.558763 4_4:+61161486 Msa0692540:CDS
TTGTGTCAATGAGGTACTGT+TGG 0.566128 4_4:-61164181 None:intergenic
AGATGCAGAATTTCAACAGA+AGG 0.567059 4_4:+61165720 Msa0692540:CDS
TGGTGGTGGCTTGTCACCGT+TGG 0.569092 4_4:+61161527 Msa0692540:CDS
AAGCTAAGCATACCACTTGG+TGG 0.571427 4_4:-61166097 None:intergenic
GATGCAGAATTTCAACAGAA+GGG 0.571983 4_4:+61165721 Msa0692540:CDS
AGTGGCACATCTAAGATTGA+AGG 0.580831 4_4:+61165763 Msa0692540:CDS
GCATGTTGAGAGGGTTTCAA+CGG 0.585716 4_4:+61165577 Msa0692540:CDS
ATGAACCTGGTCTCAAGAGA+AGG 0.587168 4_4:+61164604 Msa0692540:CDS
GTGTATCTAGGTATAATGAA+TGG 0.587900 4_4:+61166135 Msa0692540:three_prime_UTR
TGTTCGGAAGCATGTTGAGA+GGG 0.594276 4_4:+61165568 Msa0692540:CDS
GACACGTTGGATGTGGAGCA+TGG 0.595589 4_4:+61161480 Msa0692540:CDS
GAAGTATATATTACCTGAGG+TGG 0.596349 4_4:-61161564 None:intergenic
TTGGATTTGAGCATTTGAGT+AGG 0.596492 4_4:-61164127 None:intergenic
AAGTTGTGAATGGTTGGAGG+TGG 0.597067 4_4:+61161345 Msa0692540:exon
AAGTGATGTGGATCTCTTGG+AGG 0.597649 4_4:+61164994 Msa0692540:CDS
GCTAAGCATACCACTTGGTG+GGG 0.608157 4_4:-61166095 None:intergenic
TCTTTCATCTATCTAAAGCG+TGG 0.612176 4_4:+61161187 Msa0692540:five_prime_UTR
ACTGAAGTAGATTATGAACC+TGG 0.614019 4_4:+61164591 Msa0692540:CDS
ATGTTCGGAAGCATGTTGAG+AGG 0.614164 4_4:+61165567 Msa0692540:CDS
CTGAGGTGGAGAAGTGAACA+TGG 0.615388 4_4:-61161550 None:intergenic
GCTCCTCGCTGGCGACACGT+TGG 0.617837 4_4:+61161467 Msa0692540:CDS
ACAGTCCTATGTGAAAGGGA+TGG 0.625637 4_4:-61164941 None:intergenic
TACGGGCAGAAAGTTGTCAA+AGG 0.626111 4_4:+61165037 Msa0692540:CDS
TCAAAGGCAACCCATATCCA+AGG 0.626448 4_4:+61165053 Msa0692540:CDS
TATGGACAGAAACAAGTGAA+AGG 0.627695 4_4:+61164348 Msa0692540:CDS
GATGTGGATCTCTTGGAGGA+TGG 0.628338 4_4:+61164998 Msa0692540:CDS
AAGTTGGAAAGCAAAGTCAT+GGG 0.630381 4_4:-61161408 None:intergenic
TCAACATCAGCCTTCAGCAG+TGG 0.630519 4_4:+61165745 Msa0692540:CDS
ATCAAGCTAAGCATACCACT+TGG 0.631131 4_4:-61166100 None:intergenic
TGAATCCATCCCTTTCACAT+AGG 0.631552 4_4:+61164936 Msa0692540:CDS
ATGCAGAATTTCAACAGAAG+GGG 0.631709 4_4:+61165722 Msa0692540:CDS
TGCTTCCGAACATTGCAACC+CGG 0.632799 4_4:-61165557 None:intergenic
ATAAAGTTGTGAATGGTTGG+AGG 0.633267 4_4:+61161342 Msa0692540:exon
TGTGTCAATGAGGTACTGTT+GGG 0.640910 4_4:-61164180 None:intergenic
TTATAGATCATATGTGTGAG+TGG 0.642184 4_4:+61165954 Msa0692540:three_prime_UTR
TATCTAGGTATAATGAATGG+TGG 0.644969 4_4:+61166138 Msa0692540:three_prime_UTR
GTCAGGAACAAGTGACAGTG+AGG 0.650399 4_4:+61164551 Msa0692540:CDS
TGATGGAACTTGTGTCAATG+AGG 0.653592 4_4:-61164190 None:intergenic
GGAGAAGTGAACATGGCCAA+CGG 0.663309 4_4:-61161543 None:intergenic
TGTGCAAACAACAAGTGATG+TGG 0.666996 4_4:+61164982 Msa0692540:CDS
GTTGATAAGGCTAATGACGA+CGG 0.676828 4_4:+61164309 Msa0692540:CDS
CATCCAACGTGTCGCCAGCG+AGG 0.677352 4_4:-61161470 None:intergenic
TTGGAGGTGGAAATGGAGAG+TGG 0.686540 4_4:+61161358 Msa0692540:CDS
TGGCATGTTTGGCTTCATGG+AGG 0.697539 4_4:+61166158 Msa0692540:three_prime_UTR
TCACCAAACTCCCCACCAAG+TGG 0.700564 4_4:+61166085 Msa0692540:three_prime_UTR
ATGACGACGGATACAACTGG+AGG 0.731932 4_4:+61164322 Msa0692540:CDS
ACGTTGGATGTGGAGCATGG+AGG 0.754990 4_4:+61161483 Msa0692540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTAAAAAAAAACATA+TGG + chr4_4:61163580-61163599 Msa0692540:intron 10.0%
!!! TTTTAAAAAAATTACACTAA+CGG - chr4_4:61164701-61164720 None:intergenic 10.0%
!!! ATCTTTATAGTTTTATTTTT+TGG + chr4_4:61166031-61166050 Msa0692540:three_prime_UTR 10.0%
!! TATATAAATTAGCATATAGA+AGG - chr4_4:61162169-61162188 None:intergenic 15.0%
!! AATAATGATGAAAATGATAA+TGG + chr4_4:61162294-61162313 Msa0692540:intron 15.0%
!!! TACTCAATTAAAAAGTATAT+TGG + chr4_4:61163316-61163335 Msa0692540:intron 15.0%
!!! ATATGTTTATTCCTTTTTTT+AGG - chr4_4:61163554-61163573 None:intergenic 15.0%
!!! AAAAAACATATGGATTTTAA+TGG + chr4_4:61163590-61163609 Msa0692540:intron 15.0%
!!! AAATTTTGTCTATAAAGTAT+CGG + chr4_4:61163649-61163668 Msa0692540:intron 15.0%
!!! AATACTTAAGTAATTCTTTT+TGG - chr4_4:61163718-61163737 None:intergenic 15.0%
!!! TTTCATATTTTATACAAGAT+TGG + chr4_4:61165812-61165831 Msa0692540:three_prime_UTR 15.0%
!! GACATTTAATATGTAATTGA+TGG + chr4_4:61161015-61161034 Msa0692540:five_prime_UTR 20.0%
!!! GACTTTTTTTTGTACAAATT+AGG + chr4_4:61161057-61161076 Msa0692540:five_prime_UTR 20.0%
!!! ACTTTTAAGACTTATAGATA+AGG + chr4_4:61161082-61161101 Msa0692540:five_prime_UTR 20.0%
!!! CTTTTAAGACTTATAGATAA+GGG + chr4_4:61161083-61161102 Msa0692540:five_prime_UTR 20.0%
!!! TTTTAAGACTTATAGATAAG+GGG + chr4_4:61161084-61161103 Msa0692540:five_prime_UTR 20.0%
!! ATAATCAATAAAGTTGTGAA+TGG + chr4_4:61161335-61161354 Msa0692540:exon 20.0%
!! TCAATTATCATAAATTTGCA+AGG - chr4_4:61163004-61163023 None:intergenic 20.0%
!!! GTAGTTTTGATTAAAATTCT+TGG + chr4_4:61162372-61162391 Msa0692540:intron 20.0%
!!! AAGTATTTTCTTATGTGTAT+TGG + chr4_4:61162431-61162450 Msa0692540:intron 20.0%
!! AAGTTTATAATCTATGACTA+AGG + chr4_4:61162744-61162763 Msa0692540:intron 20.0%
!! CATATAAATTAGCATATAGA+AGG + chr4_4:61162961-61162980 Msa0692540:intron 20.0%
!! TCAATTATCATAAATTTGCA+AGG + chr4_4:61163004-61163023 Msa0692540:intron 20.0%
!!! CAATTAAAAAGTATATTGGT+TGG + chr4_4:61163320-61163339 Msa0692540:intron 20.0%
!! GGATAAATTCAAAAATTCTT+CGG - chr4_4:61163697-61163716 None:intergenic 20.0%
!! AAATTCAACCACTATTTATT+TGG + chr4_4:61164024-61164043 Msa0692540:intron 20.0%
!! ATGTTATTGAATGTTATTGA+TGG - chr4_4:61164210-61164229 None:intergenic 20.0%
!! GTAACTGCAATTATTTATAA+AGG + chr4_4:61164459-61164478 Msa0692540:CDS 20.0%
!! ATACATCTACTTAATTATGT+AGG + chr4_4:61165087-61165106 Msa0692540:intron 20.0%
!! TACATCTACTTAATTATGTA+GGG + chr4_4:61165088-61165107 Msa0692540:intron 20.0%
!! AAATTAGTGATACAACTTTA+GGG - chr4_4:61165128-61165147 None:intergenic 20.0%
!! TAAATTAGTGATACAACTTT+AGG - chr4_4:61165129-61165148 None:intergenic 20.0%
!!! ATTTTTTGGAGAAAATGTAT+TGG + chr4_4:61166045-61166064 Msa0692540:three_prime_UTR 20.0%
! AAGTTATATACGTGAAAGAT+AGG + chr4_4:61161126-61161145 Msa0692540:five_prime_UTR 25.0%
!! TTTAATTTCATCGAGCTTAA+GGG - chr4_4:61161670-61161689 None:intergenic 25.0%
!!! TTTTAATTTCATCGAGCTTA+AGG - chr4_4:61161671-61161690 None:intergenic 25.0%
! ACATCTCATTCTCTAAATAT+AGG + chr4_4:61161697-61161716 Msa0692540:intron 25.0%
!!! TACAACTACGAATTTTTTTC+AGG - chr4_4:61161786-61161805 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG - chr4_4:61163217-61163236 None:intergenic 25.0%
! ACTATATAATGTGAAGTTGA+TGG + chr4_4:61162220-61162239 Msa0692540:intron 25.0%
! ATTATTGATAAACTACAAGG+GGG - chr4_4:61162552-61162571 None:intergenic 25.0%
! CATTATTGATAAACTACAAG+GGG - chr4_4:61162553-61162572 None:intergenic 25.0%
! CCATTATTGATAAACTACAA+GGG - chr4_4:61162554-61162573 None:intergenic 25.0%
! ACCATTATTGATAAACTACA+AGG - chr4_4:61162555-61162574 None:intergenic 25.0%
! ACCATTATTGATAAACTACA+GGG - chr4_4:61162555-61162574 None:intergenic 25.0%
! TATGCTTATACTGTCATTAT+AGG - chr4_4:61162823-61162842 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG + chr4_4:61163217-61163236 Msa0692540:intron 25.0%
! AAAATGAGTGATATCTTTCT+TGG - chr4_4:61163365-61163384 None:intergenic 25.0%
! ATAAACGTTCTCCTAAAAAA+AGG + chr4_4:61163540-61163559 Msa0692540:intron 25.0%
! CTACTATATATGCTTCAATT+AGG + chr4_4:61163858-61163877 Msa0692540:intron 25.0%
! TATATGCTTCAATTAGGATA+AGG + chr4_4:61163864-61163883 Msa0692540:intron 25.0%
! TGGAATTGGAATATTAAACA+AGG + chr4_4:61163932-61163951 Msa0692540:intron 25.0%
! TAATTTAATCCAAACTTCCA+AGG - chr4_4:61163987-61164006 None:intergenic 25.0%
! CTTAAAAGTCATACAAATGA+TGG - chr4_4:61164742-61164761 None:intergenic 25.0%
!! CATCATTTGTATGACTTTTA+AGG + chr4_4:61164740-61164759 Msa0692540:intron 25.0%
! AATCATAATTCATAGCTGTT+TGG - chr4_4:61164798-61164817 None:intergenic 25.0%
! TGATTGATCGACAATATAAA+AGG + chr4_4:61164813-61164832 Msa0692540:intron 25.0%
! ATGTATATATGTAATCACCT+TGG - chr4_4:61165073-61165092 None:intergenic 25.0%
! GACTAAACTCTATAATTTCA+AGG + chr4_4:61165303-61165322 Msa0692540:intron 25.0%
TCAATAAAGTTGTGAATGGT+TGG + chr4_4:61161339-61161358 Msa0692540:exon 30.0%
GTTGAAGTATATATTACCTG+AGG - chr4_4:61161570-61161589 None:intergenic 30.0%
TTAATTTCATCGAGCTTAAG+GGG - chr4_4:61161669-61161688 None:intergenic 30.0%
TTGATATTTCGTTAACTGCA+GGG - chr4_4:61163248-61163267 None:intergenic 30.0%
ATTGATATTTCGTTAACTGC+AGG - chr4_4:61163247-61163266 None:intergenic 30.0%
ACTAACGTTTATCAATTTCG+GGG - chr4_4:61163219-61163238 None:intergenic 30.0%
GACTAACGTTTATCAATTTC+GGG - chr4_4:61163218-61163237 None:intergenic 30.0%
AGAAGGAATAAGATTCATAG+TGG - chr4_4:61162978-61162997 None:intergenic 30.0%
GATAGTATTGTTGTGTATGT+TGG + chr4_4:61162350-61162369 Msa0692540:intron 30.0%
GTATTGGAAACAAATGTAAG+AGG + chr4_4:61162447-61162466 Msa0692540:intron 30.0%
CCCTTGTAGTTTATCAATAA+TGG + chr4_4:61162551-61162570 Msa0692540:intron 30.0%
CATTATTGATAAACTACAGG+GGG - chr4_4:61162584-61162603 None:intergenic 30.0%
CCATTATTGATAAACTACAG+GGG - chr4_4:61162585-61162604 None:intergenic 30.0%
GACCATTATTGATAAACTAC+AGG - chr4_4:61162556-61162575 None:intergenic 30.0%
CAAATAATTCAAATACAGGG+GGG - chr4_4:61162615-61162634 None:intergenic 30.0%
CCAAATAATTCAAATACAGG+GGG - chr4_4:61162616-61162635 None:intergenic 30.0%
CCCAAATAATTCAAATACAG+GGG - chr4_4:61162617-61162636 None:intergenic 30.0%
CCCCTGTATTTGAATTATTT+GGG + chr4_4:61162614-61162633 Msa0692540:intron 30.0%
GCCCAAATAATTCAAATACA+GGG - chr4_4:61162618-61162637 None:intergenic 30.0%
AGCCCAAATAATTCAAATAC+AGG - chr4_4:61162619-61162638 None:intergenic 30.0%
AGAAGGAATAAGATTCATAG+TGG + chr4_4:61162978-61162997 Msa0692540:intron 30.0%
GACTAACGTTTATCAATTTC+GGG + chr4_4:61163218-61163237 Msa0692540:intron 30.0%
ACTAACGTTTATCAATTTCG+GGG + chr4_4:61163219-61163238 Msa0692540:intron 30.0%
ATTGATATTTCGTTAACTGC+AGG + chr4_4:61163247-61163266 Msa0692540:intron 30.0%
TTGATATTTCGTTAACTGCA+GGG + chr4_4:61163248-61163267 Msa0692540:intron 30.0%
AGTATTTATTGCTCACGAAA+AGG + chr4_4:61163398-61163417 Msa0692540:intron 30.0%
! CTTGATCTCAAGTTTCATTT+TGG + chr4_4:61163809-61163828 Msa0692540:intron 30.0%
! CACATTTGATTAGCTAAGTT+AGG + chr4_4:61163891-61163910 Msa0692540:intron 30.0%
TTAACCAGCCAAATAAATAG+TGG - chr4_4:61164035-61164054 None:intergenic 30.0%
TTCTTCTGTGAATGTTGATA+AGG + chr4_4:61164296-61164315 Msa0692540:CDS 30.0%
!!! TAGTTTTATGTGACGATGTT+AGG + chr4_4:61164875-61164894 Msa0692540:intron 30.0%
! GTTGTTTGCACAATGATTTT+AGG - chr4_4:61164974-61164993 None:intergenic 30.0%
TATGTAATCACCTTGGATAT+GGG - chr4_4:61165066-61165085 None:intergenic 30.0%
ATATGTAATCACCTTGGATA+TGG - chr4_4:61165067-61165086 None:intergenic 30.0%
CAAAGTTTCGTTTGTTTCAA+AGG - chr4_4:61165219-61165238 None:intergenic 30.0%
AATTTCAAGGTCAAGAATGT+TGG + chr4_4:61165316-61165335 Msa0692540:intron 30.0%
!! TCTAATTGTTGATGACCATT+AGG + chr4_4:61165344-61165363 Msa0692540:intron 30.0%
ATGTAACTAAGCATTTCTGA+GGG - chr4_4:61165402-61165421 None:intergenic 30.0%
AATGTAACTAAGCATTTCTG+AGG - chr4_4:61165403-61165422 None:intergenic 30.0%
!!! TCACTATCTTTTCTAGAACA+TGG - chr4_4:61165490-61165509 None:intergenic 30.0%
GCATTCTTGTATCATAATGT+AGG + chr4_4:61165513-61165532 Msa0692540:intron 30.0%
TATGTTGTCAATACAGCTTT+AGG - chr4_4:61165605-61165624 None:intergenic 30.0%
GAACTCACAAGTAATCTTTA+AGG + chr4_4:61165847-61165866 Msa0692540:three_prime_UTR 30.0%
!!! CTCTTTTGTTTTTGAATGTG+AGG + chr4_4:61165877-61165896 Msa0692540:three_prime_UTR 30.0%
ATACCAGAAATTGGACTTAT+AGG - chr4_4:61165921-61165940 None:intergenic 30.0%
!! GCTTTTTCTATACCAGAAAT+TGG - chr4_4:61165930-61165949 None:intergenic 30.0%
TTATAGATCATATGTGTGAG+TGG + chr4_4:61165954-61165973 Msa0692540:three_prime_UTR 30.0%
! AGAAAATGTATTGGTCTCTT+AGG + chr4_4:61166054-61166073 Msa0692540:three_prime_UTR 30.0%
GTGTATCTAGGTATAATGAA+TGG + chr4_4:61166135-61166154 Msa0692540:three_prime_UTR 30.0%
TATCTAGGTATAATGAATGG+TGG + chr4_4:61166138-61166157 Msa0692540:three_prime_UTR 30.0%
! TCTTTCATCTATCTAAAGCG+TGG + chr4_4:61161187-61161206 Msa0692540:five_prime_UTR 35.0%
ATAAAGTTGTGAATGGTTGG+AGG + chr4_4:61161342-61161361 Msa0692540:exon 35.0%
AAGTTGGAAAGCAAAGTCAT+GGG - chr4_4:61161411-61161430 None:intergenic 35.0%
! ACTTTGCTTTCCAACTTGTT+TGG + chr4_4:61161414-61161433 Msa0692540:CDS 35.0%
GAAGTATATATTACCTGAGG+TGG - chr4_4:61161567-61161586 None:intergenic 35.0%
TGATATTTCGTTAACTGCAG+GGG - chr4_4:61163249-61163268 None:intergenic 35.0%
TAACGTTTATCAATTTCGGG+GGG - chr4_4:61163221-61163240 None:intergenic 35.0%
CTAACGTTTATCAATTTCGG+GGG - chr4_4:61163220-61163239 None:intergenic 35.0%
CCCCTGTAGTTTATCAATAA+TGG + chr4_4:61162582-61162601 Msa0692540:intron 35.0%
CCCCCTGTATTTGAATTATT+TGG + chr4_4:61162613-61162632 Msa0692540:intron 35.0%
ACAAACAGAACTAGCATAAC+AGG - chr4_4:61162657-61162676 None:intergenic 35.0%
!! TGTTATGCTAGTTCTGTTTG+TGG + chr4_4:61162656-61162675 Msa0692540:intron 35.0%
TGTTGGATGGAGGAAATTAA+CGG + chr4_4:61163183-61163202 Msa0692540:intron 35.0%
CTAACGTTTATCAATTTCGG+GGG + chr4_4:61163220-61163239 Msa0692540:intron 35.0%
TAACGTTTATCAATTTCGGG+GGG + chr4_4:61163221-61163240 Msa0692540:intron 35.0%
TGATATTTCGTTAACTGCAG+GGG + chr4_4:61163249-61163268 Msa0692540:intron 35.0%
ATTTATTGCTCACGAAAAGG+AGG + chr4_4:61163401-61163420 Msa0692540:intron 35.0%
TTCTTCGGTATCTTAGAGTT+TGG - chr4_4:61163682-61163701 None:intergenic 35.0%
CTAAATGATCAAGTGCTTTC+TGG + chr4_4:61163835-61163854 Msa0692540:intron 35.0%
CACGAAATCAAAAGATACCT+TGG + chr4_4:61163967-61163986 Msa0692540:intron 35.0%
CAAAAGATACCTTGGAAGTT+TGG + chr4_4:61163975-61163994 Msa0692540:intron 35.0%
TCAACCACTATTTATTTGGC+TGG + chr4_4:61164028-61164047 Msa0692540:intron 35.0%
TTGGATTTGAGCATTTGAGT+AGG - chr4_4:61164130-61164149 None:intergenic 35.0%
CAGAAAATGGATGTTCAGAT+TGG - chr4_4:61164149-61164168 None:intergenic 35.0%
GAAGAATACTCAACAGAGTT+TGG - chr4_4:61164249-61164268 None:intergenic 35.0%
TATGGACAGAAACAAGTGAA+AGG + chr4_4:61164348-61164367 Msa0692540:CDS 35.0%
ACTGAAGTAGATTATGAACC+TGG + chr4_4:61164591-61164610 Msa0692540:CDS 35.0%
!! AATTTTGTGTCTGAAGTTGC+AGG + chr4_4:61165173-61165192 Msa0692540:intron 35.0%
TAACATTAGTCCACACATTC+AGG + chr4_4:61165269-61165288 Msa0692540:intron 35.0%
CTAAAATTGTCCTGAATGTG+TGG - chr4_4:61165282-61165301 None:intergenic 35.0%
CTATTACAAATGCACAACTC+CGG + chr4_4:61165538-61165557 Msa0692540:CDS 35.0%
TATTACAAATGCACAACTCC+GGG + chr4_4:61165539-61165558 Msa0692540:CDS 35.0%
! GCTGTATTGACAACATATGA+AGG + chr4_4:61165608-61165627 Msa0692540:CDS 35.0%
ATGCACTATTATTGCTAGCA+AGG - chr4_4:61165679-61165698 None:intergenic 35.0%
AGATGCAGAATTTCAACAGA+AGG + chr4_4:61165720-61165739 Msa0692540:CDS 35.0%
GATGCAGAATTTCAACAGAA+GGG + chr4_4:61165721-61165740 Msa0692540:CDS 35.0%
ATGCAGAATTTCAACAGAAG+GGG + chr4_4:61165722-61165741 Msa0692540:CDS 35.0%
! TATTGGTCTCTTAGGAGTAA+TGG + chr4_4:61166062-61166081 Msa0692540:three_prime_UTR 35.0%
ATAATGAATGGTGGCATGTT+TGG + chr4_4:61166147-61166166 Msa0692540:three_prime_UTR 35.0%
GAAAGATAGGAGAAGATTGC+AGG + chr4_4:61161139-61161158 Msa0692540:five_prime_UTR 40.0%
! CAAGTTGGAAAGCAAAGTCA+TGG - chr4_4:61161412-61161431 None:intergenic 40.0%
ATCGTTGTCACCAAACAAGT+TGG - chr4_4:61161427-61161446 None:intergenic 40.0%
CTTCCATAGAGTCAAGTCAA+CGG + chr4_4:61161628-61161647 Msa0692540:intron 40.0%
!! TTACCGTTGACTTGACTCTA+TGG - chr4_4:61161634-61161653 None:intergenic 40.0%
ATATTTCGTTAACTGCAGGG+GGG - chr4_4:61163251-61163270 None:intergenic 40.0%
GATATTTCGTTAACTGCAGG+GGG - chr4_4:61163250-61163269 None:intergenic 40.0%
AACGTTTATCAATTTCGGGG+GGG - chr4_4:61163222-61163241 None:intergenic 40.0%
TGTCGGATGGAGGAAATTAA+CGG - chr4_4:61161948-61161967 None:intergenic 40.0%
!! GTTGATGGTGTGTATCGATT+TGG + chr4_4:61162235-61162254 Msa0692540:intron 40.0%
!! TGTATCGATTTGGACAGAAG+AGG + chr4_4:61162245-61162264 Msa0692540:intron 40.0%
!! GTATCGATTTGGACAGAAGA+GGG + chr4_4:61162246-61162265 Msa0692540:intron 40.0%
!! TATCGATTTGGACAGAAGAG+GGG + chr4_4:61162247-61162266 Msa0692540:intron 40.0%
! GGGAATTGAAGCTTGCTTTA+GGG + chr4_4:61162268-61162287 Msa0692540:intron 40.0%
! GGTTTTTGACACGAACTTGT+TGG - chr4_4:61162531-61162550 None:intergenic 40.0%
!! ATGCTAGTTCTGTTTGTGGT+TGG + chr4_4:61162660-61162679 Msa0692540:intron 40.0%
AACGTTTATCAATTTCGGGG+GGG + chr4_4:61163222-61163241 Msa0692540:intron 40.0%
GATATTTCGTTAACTGCAGG+GGG + chr4_4:61163250-61163269 Msa0692540:intron 40.0%
ATATTTCGTTAACTGCAGGG+GGG + chr4_4:61163251-61163270 Msa0692540:intron 40.0%
TCGGTATCTTAGAGTTTGGT+CGG - chr4_4:61163678-61163697 None:intergenic 40.0%
GGATTTACTGCACATCTGAT+TGG + chr4_4:61163912-61163931 Msa0692540:intron 40.0%
ACTGCACATCTGATTGGAAT+TGG + chr4_4:61163918-61163937 Msa0692540:intron 40.0%
!! GGTACTGATGATGCAGAAAA+TGG - chr4_4:61164162-61164181 None:intergenic 40.0%
!! TGTGTCAATGAGGTACTGTT+GGG - chr4_4:61164183-61164202 None:intergenic 40.0%
!! TTGTGTCAATGAGGTACTGT+TGG - chr4_4:61164184-61164203 None:intergenic 40.0%
TGATGGAACTTGTGTCAATG+AGG - chr4_4:61164193-61164212 None:intergenic 40.0%
! GTTGATAAGGCTAATGACGA+CGG + chr4_4:61164309-61164328 Msa0692540:CDS 40.0%
GTGCACTTGTAATAACTTCG+AGG - chr4_4:61164384-61164403 None:intergenic 40.0%
! TTTTTCGTCACAAGACAGCT+TGG - chr4_4:61164411-61164430 None:intergenic 40.0%
! TATGTGAAAGGGATGGATTC+AGG - chr4_4:61164937-61164956 None:intergenic 40.0%
TGAATCCATCCCTTTCACAT+AGG + chr4_4:61164936-61164955 Msa0692540:CDS 40.0%
TGAGACAGTCCTATGTGAAA+GGG - chr4_4:61164948-61164967 None:intergenic 40.0%
TTGAGACAGTCCTATGTGAA+AGG - chr4_4:61164949-61164968 None:intergenic 40.0%
TGTGCAAACAACAAGTGATG+TGG + chr4_4:61164982-61165001 Msa0692540:CDS 40.0%
AACAAGTGATGTGGATCTCT+TGG + chr4_4:61164991-61165010 Msa0692540:CDS 40.0%
TCTTGGAGGATGGATATAGA+TGG + chr4_4:61165008-61165027 Msa0692540:CDS 40.0%
GGATATAGATGGCGCAAATA+CGG + chr4_4:61165019-61165038 Msa0692540:CDS 40.0%
GATATAGATGGCGCAAATAC+GGG + chr4_4:61165020-61165039 Msa0692540:CDS 40.0%
GCTCTAGTAGACAATCCTAA+TGG - chr4_4:61165362-61165381 None:intergenic 40.0%
! AGTGGCACATCTAAGATTGA+AGG + chr4_4:61165763-61165782 Msa0692540:CDS 40.0%
ATAGGCCTTGGTCAAAACTT+TGG - chr4_4:61165903-61165922 None:intergenic 40.0%
GAAATTGGACTTATAGGCCT+TGG - chr4_4:61165915-61165934 None:intergenic 40.0%
AGGCCTATAAGTCCAATTTC+TGG + chr4_4:61165915-61165934 Msa0692540:three_prime_UTR 40.0%
ATCAAGCTAAGCATACCACT+TGG - chr4_4:61166103-61166122 None:intergenic 40.0%
! GAAAGAGTGAGAGTGTATCT+AGG + chr4_4:61166123-61166142 Msa0692540:three_prime_UTR 40.0%
GGAGGATTATGAGTGAATTC+AGG + chr4_4:61166176-61166195 Msa0692540:three_prime_UTR 40.0%
GAAGATTGCAGGCATAGCAT+AGG + chr4_4:61161150-61161169 Msa0692540:five_prime_UTR 45.0%
AAGTTGTGAATGGTTGGAGG+TGG + chr4_4:61161345-61161364 Msa0692540:exon 45.0%
TGAATGGTTGGAGGTGGAAA+TGG + chr4_4:61161351-61161370 Msa0692540:exon 45.0%
CGATGACTGCAAGTCTTTCT+CGG + chr4_4:61161443-61161462 Msa0692540:CDS 45.0%
ATCGAGCTTAAGGGGTCATA+TGG - chr4_4:61161661-61161680 None:intergenic 45.0%
ATTGACGCGCCTTGCAATTT+CGG - chr4_4:61163276-61163295 None:intergenic 45.0%
ATGGAGGAAATTAACGGAGG+GGG - chr4_4:61163189-61163208 None:intergenic 45.0%
GATGGAGGAAATTAACGGAG+GGG - chr4_4:61163188-61163207 None:intergenic 45.0%
GGATGGAGGAAATTAACGGA+GGG - chr4_4:61163187-61163206 None:intergenic 45.0%
TAACTGCCACATCAGCATGT+CGG - chr4_4:61163166-61163185 None:intergenic 45.0%
!! ATCGATTTGGACAGAAGAGG+GGG + chr4_4:61162248-61162267 Msa0692540:intron 45.0%
! GGGGAATTGAAGCTTGCTTT+AGG + chr4_4:61162267-61162286 Msa0692540:intron 45.0%
!! CTAGTTCTGTTTGTGGTTGG+TGG + chr4_4:61162663-61162682 Msa0692540:intron 45.0%
TAACTGCCACATCAGCATGT+TGG + chr4_4:61163166-61163185 Msa0692540:intron 45.0%
TGGATGGAGGAAATTAACGG+AGG + chr4_4:61163186-61163205 Msa0692540:intron 45.0%
GGATGGAGGAAATTAACGGA+GGG + chr4_4:61163187-61163206 Msa0692540:intron 45.0%
GATGGAGGAAATTAACGGAG+GGG + chr4_4:61163188-61163207 Msa0692540:intron 45.0%
ATGGAGGAAATTAACGGAGG+GGG + chr4_4:61163189-61163208 Msa0692540:intron 45.0%
ATTGACGCGCCTTGCAATTT+CGG + chr4_4:61163276-61163295 Msa0692540:intron 45.0%
!! TGCTTGCTGTTGGGAGAATA+AGG - chr4_4:61164097-61164116 None:intergenic 45.0%
!! TTGTGCTAGTGCTTGCTGTT+GGG - chr4_4:61164106-61164125 None:intergenic 45.0%
CTAATGACGACGGATACAAC+TGG + chr4_4:61164319-61164338 Msa0692540:CDS 45.0%
GGATACAACTGGAGGAAGTA+TGG + chr4_4:61164330-61164349 Msa0692540:CDS 45.0%
GCAGTTACATGACCATCTAC+AGG - chr4_4:61164447-61164466 None:intergenic 45.0%
! TTGTCGTTTGTGAGCTTGCT+AGG - chr4_4:61164510-61164529 None:intergenic 45.0%
!! AGCGTGCAACAAGTTTTGTC+AGG + chr4_4:61164534-61164553 Msa0692540:CDS 45.0%
ACAAGTGACAGTGAGGAAGA+AGG + chr4_4:61164558-61164577 Msa0692540:CDS 45.0%
ATGAACCTGGTCTCAAGAGA+AGG + chr4_4:61164604-61164623 Msa0692540:CDS 45.0%
CTGGTCTCAAGAGAAGGTAA+GGG + chr4_4:61164610-61164629 Msa0692540:intron 45.0%
! AAGGGATGGATTCAGGAGTT+TGG - chr4_4:61164930-61164949 None:intergenic 45.0%
ACAGTCCTATGTGAAAGGGA+TGG - chr4_4:61164944-61164963 None:intergenic 45.0%
AAGTGATGTGGATCTCTTGG+AGG + chr4_4:61164994-61165013 Msa0692540:CDS 45.0%
TACGGGCAGAAAGTTGTCAA+AGG + chr4_4:61165037-61165056 Msa0692540:CDS 45.0%
TCAAAGGCAACCCATATCCA+AGG + chr4_4:61165053-61165072 Msa0692540:CDS 45.0%
! ATGTTCGGAAGCATGTTGAG+AGG + chr4_4:61165567-61165586 Msa0692540:CDS 45.0%
! TGTTCGGAAGCATGTTGAGA+GGG + chr4_4:61165568-61165587 Msa0692540:CDS 45.0%
GCATGTTGAGAGGGTTTCAA+CGG + chr4_4:61165577-61165596 Msa0692540:CDS 45.0%
!! TGACTGTTAGTCTTAGCTGC+TGG - chr4_4:61165653-61165672 None:intergenic 45.0%
!! TGAGGCCAAAGTTTTGACCA+AGG + chr4_4:61165895-61165914 Msa0692540:three_prime_UTR 45.0%
AGCTAAGCATACCACTTGGT+GGG - chr4_4:61166099-61166118 None:intergenic 45.0%
AAGCTAAGCATACCACTTGG+TGG - chr4_4:61166100-61166119 None:intergenic 45.0%
!!! ATTTTTGTTAATAATTAAAA+AGG + chr4_4:61161808-61161827 Msa0692540:intron 5.0%
TTGGAGGTGGAAATGGAGAG+TGG + chr4_4:61161358-61161377 Msa0692540:CDS 50.0%
GAAAGCAAAGTCATGGGACC+TGG - chr4_4:61161405-61161424 None:intergenic 50.0%
GGAGAAGTGAACATGGCCAA+CGG - chr4_4:61161546-61161565 None:intergenic 50.0%
CTGAGGTGGAGAAGTGAACA+TGG - chr4_4:61161553-61161572 None:intergenic 50.0%
CATGTTCACTTCTCCACCTC+AGG + chr4_4:61161551-61161570 Msa0692540:CDS 50.0%
GAGCTTAAGGGGTCATATGG+TGG - chr4_4:61161658-61161677 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG - chr4_4:61163288-61163307 None:intergenic 50.0%
AATACCCCCCCGAAATTGCA+AGG + chr4_4:61161843-61161862 Msa0692540:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG - chr4_4:61163277-61163296 None:intergenic 50.0%
TGGAGGAAATTAACGGAGGG+GGG - chr4_4:61163190-61163209 None:intergenic 50.0%
CGGATGGAGGAAATTAACGG+AGG - chr4_4:61161945-61161964 None:intergenic 50.0%
CACTGCCACATGGTCAGAAA+AGG + chr4_4:61161998-61162017 Msa0692540:intron 50.0%
! GCATGCCTTTTCTGACCATG+TGG - chr4_4:61163125-61163144 None:intergenic 50.0%
! AAAAGGCATGCCACGTCAGA+GGG + chr4_4:61162015-61162034 Msa0692540:intron 50.0%
! AAAAGGCATGCCACGTCAGA+GGG - chr4_4:61162015-61162034 None:intergenic 50.0%
! GCATGCCTTTTCTGACCATG+TGG + chr4_4:61163125-61163144 Msa0692540:intron 50.0%
CACTGCCACATGGTCAGAAA+AGG - chr4_4:61161998-61162017 None:intergenic 50.0%
TGCCACATCAGCATGTTGGA+TGG + chr4_4:61163170-61163189 Msa0692540:intron 50.0%
CTCCATCCAACATGCTGATG+TGG - chr4_4:61163175-61163194 None:intergenic 50.0%
CACATCAGCATGTTGGATGG+AGG + chr4_4:61163173-61163192 Msa0692540:intron 50.0%
TGGAGGAAATTAACGGAGGG+GGG + chr4_4:61163190-61163209 Msa0692540:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG + chr4_4:61163277-61163296 Msa0692540:intron 50.0%
AATACCCCCCCGAAATTGCA+AGG - chr4_4:61161843-61161862 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG + chr4_4:61163288-61163307 Msa0692540:intron 50.0%
!! CTTGTGCTAGTGCTTGCTGT+TGG - chr4_4:61164107-61164126 None:intergenic 50.0%
ATGACGACGGATACAACTGG+AGG + chr4_4:61164322-61164341 Msa0692540:CDS 50.0%
!! TTGTGAGCTTGCTAGGACGT+GGG - chr4_4:61164503-61164522 None:intergenic 50.0%
!! TTTGTGAGCTTGCTAGGACG+TGG - chr4_4:61164504-61164523 None:intergenic 50.0%
GTCAGGAACAAGTGACAGTG+AGG + chr4_4:61164551-61164570 Msa0692540:CDS 50.0%
CCTTACCTTCTCTTGAGACC+AGG - chr4_4:61164612-61164631 None:intergenic 50.0%
CCTGGTCTCAAGAGAAGGTA+AGG + chr4_4:61164609-61164628 Msa0692540:intron 50.0%
GATGTGGATCTCTTGGAGGA+TGG + chr4_4:61164998-61165017 Msa0692540:CDS 50.0%
CAACTCCGGGTTGCAATGTT+CGG + chr4_4:61165552-61165571 Msa0692540:CDS 50.0%
TGCTTCCGAACATTGCAACC+CGG - chr4_4:61165560-61165579 None:intergenic 50.0%
TCAACATCAGCCTTCAGCAG+TGG + chr4_4:61165745-61165764 Msa0692540:CDS 50.0%
! CTTAGATGTGCCACTGCTGA+AGG - chr4_4:61165758-61165777 None:intergenic 50.0%
! ATACCACTTGGTGGGGAGTT+TGG - chr4_4:61166091-61166110 None:intergenic 50.0%
! GCTAAGCATACCACTTGGTG+GGG - chr4_4:61166098-61166117 None:intergenic 50.0%
! TGGTGGCATGTTTGGCTTCA+TGG + chr4_4:61166155-61166174 Msa0692540:three_prime_UTR 50.0%
! TGGCATGTTTGGCTTCATGG+AGG + chr4_4:61166158-61166177 Msa0692540:three_prime_UTR 50.0%
GGAAATGGAGAGTGGCCTTC+AGG + chr4_4:61161366-61161385 Msa0692540:CDS 55.0%
AATGGAGAGTGGCCTTCAGG+TGG + chr4_4:61161369-61161388 Msa0692540:CDS 55.0%
ATGGAGAGTGGCCTTCAGGT+GGG + chr4_4:61161370-61161389 Msa0692540:CDS 55.0%
GACACGTTGGATGTGGAGCA+TGG + chr4_4:61161480-61161499 Msa0692540:CDS 55.0%
ACGTTGGATGTGGAGCATGG+AGG + chr4_4:61161483-61161502 Msa0692540:CDS 55.0%
TTGGATGTGGAGCATGGAGG+AGG + chr4_4:61161486-61161505 Msa0692540:CDS 55.0%
TGACGCGCCTTGCAATTTCG+GGG - chr4_4:61163278-61163297 None:intergenic 55.0%
CACATCAGCATGTCGGATGG+AGG - chr4_4:61161958-61161977 None:intergenic 55.0%
CTCCATCCGACATGCTGATG+TGG + chr4_4:61161956-61161975 Msa0692540:intron 55.0%
TGCCACATCAGCATGTCGGA+TGG - chr4_4:61161961-61161980 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG + chr4_4:61162014-61162033 Msa0692540:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG + chr4_4:61162016-61162035 Msa0692540:intron 55.0%
TCAATTACCCCCCTCTGACG+TGG - chr4_4:61163103-61163122 None:intergenic 55.0%
!! TGGTTGGTGGCGTGTTTCTG+CGG + chr4_4:61162676-61162695 Msa0692540:intron 55.0%
CTCATGCACCTAGACACTGC+AGG - chr4_4:61162719-61162738 None:intergenic 55.0%
TCAATTACCCCCCTCTGACG+TGG + chr4_4:61163103-61163122 Msa0692540:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG - chr4_4:61162016-61162035 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG - chr4_4:61162014-61162033 None:intergenic 55.0%
TGACGCGCCTTGCAATTTCG+GGG + chr4_4:61163278-61163297 Msa0692540:intron 55.0%
TCACCAAACTCCCCACCAAG+TGG + chr4_4:61166085-61166104 Msa0692540:three_prime_UTR 55.0%
TGGAGAGTGGCCTTCAGGTG+GGG + chr4_4:61161371-61161390 Msa0692540:CDS 60.0%
GGACTAAACCCCCCACCTGA+AGG - chr4_4:61161384-61161403 None:intergenic 60.0%
TCAGGTGGGGGGTTTAGTCC+AGG + chr4_4:61161384-61161403 Msa0692540:CDS 60.0%
TCTTTCTCGGAGCTCCTCGC+TGG + chr4_4:61161456-61161475 Msa0692540:CDS 60.0%
GATGTGGAGCATGGAGGAGG+AGG + chr4_4:61161489-61161508 Msa0692540:CDS 60.0%
!! TGGTGGTGGCTTGTCACCGT+TGG + chr4_4:61161527-61161546 Msa0692540:CDS 60.0%
ACGCGCCTTGCAATTTCGGG+GGG - chr4_4:61163280-61163299 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG - chr4_4:61163279-61163298 None:intergenic 60.0%
GTGGCAGTTAACTGCCCACG+TGG + chr4_4:61161975-61161994 Msa0692540:intron 60.0%
ACCATGTGGCAGTGCCACGT+GGG - chr4_4:61163139-61163158 None:intergenic 60.0%
AAGGCATGCCACGTCAGAGG+GGG + chr4_4:61162017-61162036 Msa0692540:intron 60.0%
TTTCTGCGGCCTGCAGTGTC+TGG + chr4_4:61162690-61162709 Msa0692540:intron 60.0%
TTCTGCGGCCTGCAGTGTCT+GGG + chr4_4:61162691-61162710 Msa0692540:intron 60.0%
TCTGGGTGCCTGCAGTGTCT+AGG + chr4_4:61162708-61162727 Msa0692540:intron 60.0%
AAGGCATGCCACGTCAGAGG+GGG - chr4_4:61162017-61162036 None:intergenic 60.0%
ACCATGTGGCAGTGCCACGT+GGG + chr4_4:61163139-61163158 Msa0692540:intron 60.0%
GTGGCAGTTAACTGCCCACG+TGG - chr4_4:61161975-61161994 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG + chr4_4:61163279-61163298 Msa0692540:intron 60.0%
ACGCGCCTTGCAATTTCGGG+GGG + chr4_4:61163280-61163299 Msa0692540:intron 60.0%
GGAGAGTGGCCTTCAGGTGG+GGG + chr4_4:61161372-61161391 Msa0692540:CDS 65.0%
GAGAGTGGCCTTCAGGTGGG+GGG + chr4_4:61161373-61161392 Msa0692540:CDS 65.0%
CATCCAACGTGTCGCCAGCG+AGG - chr4_4:61161473-61161492 None:intergenic 65.0%
CGCTGGCGACACGTTGGATG+TGG + chr4_4:61161473-61161492 Msa0692540:CDS 65.0%
GTGGAGCATGGAGGAGGAGG+AGG + chr4_4:61161492-61161511 Msa0692540:CDS 65.0%
GAGCATGGAGGAGGAGGAGG+AGG + chr4_4:61161495-61161514 Msa0692540:CDS 65.0%
CATGGAGGAGGAGGAGGAGG+AGG + chr4_4:61161498-61161517 Msa0692540:CDS 65.0%
GGAGGAGGAGGAGGAGGAAG+AGG + chr4_4:61161504-61161523 Msa0692540:CDS 65.0%
GGAGGAGGAGGAGGAAGAGG+TGG + chr4_4:61161507-61161526 Msa0692540:CDS 65.0%
GGAGGAGGAGGAAGAGGTGG+TGG + chr4_4:61161510-61161529 Msa0692540:CDS 65.0%
! GGAGGAGGAAGAGGTGGTGG+TGG + chr4_4:61161513-61161532 Msa0692540:CDS 65.0%
CGCGCCTTGCAATTTCGGGG+GGG - chr4_4:61163281-61163300 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG - chr4_4:61163138-61163157 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG + chr4_4:61162018-61162037 Msa0692540:intron 65.0%
TGCAGGCACCCAGACACTGC+AGG - chr4_4:61162702-61162721 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG - chr4_4:61162018-61162037 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG + chr4_4:61163138-61163157 Msa0692540:intron 65.0%
CGCGCCTTGCAATTTCGGGG+GGG + chr4_4:61163281-61163300 Msa0692540:intron 65.0%
GCTCCTCGCTGGCGACACGT+TGG + chr4_4:61161467-61161486 Msa0692540:CDS 70.0%
GCCCACGTGGCACTGCCACA+TGG + chr4_4:61161988-61162007 Msa0692540:intron 70.0%
GCCCACGTGGCACTGCCACA+TGG - chr4_4:61161988-61162007 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61160941 61166215 61160941 ID=Msa0692540;Name=Msa0692540
chr4_4 mRNA 61160941 61166215 61160941 ID=Msa0692540-mRNA-1;Parent=Msa0692540;Name=Msa0692540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=413|1|1|1|1|1|4|416|385
chr4_4 exon 61160941 61161572 61160941 ID=Msa0692540-mRNA-1:exon:16823;Parent=Msa0692540-mRNA-1
chr4_4 exon 61164111 61164625 61164111 ID=Msa0692540-mRNA-1:exon:16824;Parent=Msa0692540-mRNA-1
chr4_4 exon 61164916 61165074 61164916 ID=Msa0692540-mRNA-1:exon:16825;Parent=Msa0692540-mRNA-1
chr4_4 exon 61165535 61166215 61165535 ID=Msa0692540-mRNA-1:exon:16826;Parent=Msa0692540-mRNA-1
chr4_4 five_prime_UTR 61160941 61161353 61160941 ID=Msa0692540-mRNA-1:five_prime_utr;Parent=Msa0692540-mRNA-1
chr4_4 CDS 61161354 61161572 61161354 ID=Msa0692540-mRNA-1:cds;Parent=Msa0692540-mRNA-1
chr4_4 CDS 61164111 61164625 61164111 ID=Msa0692540-mRNA-1:cds;Parent=Msa0692540-mRNA-1
chr4_4 CDS 61164916 61165074 61164916 ID=Msa0692540-mRNA-1:cds;Parent=Msa0692540-mRNA-1
chr4_4 CDS 61165535 61165799 61165535 ID=Msa0692540-mRNA-1:cds;Parent=Msa0692540-mRNA-1
chr4_4 three_prime_UTR 61165800 61166215 61165800 ID=Msa0692540-mRNA-1:three_prime_utr;Parent=Msa0692540-mRNA-1
Gene Sequence

>Msa0692540

ATGGTTGGAGGTGGAAATGGAGAGTGGCCTTCAGGTGGGGGGTTTAGTCCAGGTCCCATGACTTTGCTTTCCAACTTGTTTGGTGACAACGATGACTGCAAGTCTTTCTCGGAGCTCCTCGCTGGCGACACGTTGGATGTGGAGCATGGAGGAGGAGGAGGAGGAGGAAGAGGTGGTGGTGGCTTGTCACCGTTGGCCATGTTCACTTCTCCACCTCAGCAAGCACTAGCACAAGCCTACTCAAATGCTCAAATCCAATCTGAACATCCATTTTCTGCATCATCAGTACCCAACAGTACCTCATTGACACAAGTTCCATCAATAACATTCAATAACATTGCACAACAACTGATACCAAACTCTGTTGAGTATTCTTCTAACTCAGAACAAAGACTACAGAAGTCTTCTTCTGTGAATGTTGATAAGGCTAATGACGACGGATACAACTGGAGGAAGTATGGACAGAAACAAGTGAAAGGTTGCGAGTTTCCTCGAAGTTATTACAAGTGCACACATCCAAGCTGTCTTGTGACGAAAAAAGTTGAACGCGATCCTGTAGATGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACATTCATCAACGCCCACGTCCTAGCAAGCTCACAAACGACAATTCAAGCGTGCAACAAGTTTTGTCAGGAACAAGTGACAGTGAGGAAGAAGGAGATCATGAAACTGAAGTAGATTATGAACCTGGTCTCAAGAGAAGAAAAACAGAAGCCAAACTCCTGAATCCATCCCTTTCACATAGGACTGTCTCAAAGCCTAAAATCATTGTGCAAACAACAAGTGATGTGGATCTCTTGGAGGATGGATATAGATGGCGCAAATACGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACTCCGGGTTGCAATGTTCGGAAGCATGTTGAGAGGGTTTCAACGGATCCTAAAGCTGTATTGACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAACAGTCATAACCTTGCTAGCAATAATAGTGCATCACTGCTAAAATCACAAAATGAGATGCAGAATTTCAACAGAAGGGGTCAACATCAGCCTTCAGCAGTGGCACATCTAAGATTGAAGGAAGAGCATATATAA
Protein sequence

>Msa0692540

MVGGGNGEWPSGGGFSPGPMTLLSNLFGDNDDCKSFSELLAGDTLDVEHGGGGGGGRGGGGLSPLAMFTSPPQQALAQAYSNAQIQSEHPFSASSVPNSTSLTQVPSITFNNIAQQLIPNSVEYSSNSEQRLQKSSSVNVDKANDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCLVTKKVERDPVDGHVTAIIYKGEHIHQRPRPSKLTNDNSSVQQVLSGTSDSEEEGDHETEVDYEPGLKRRKTEAKLLNPSLSHRTVSKPKIIVQTTSDVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVLTTYEGKHNHDVPAAKTNSHNLASNNSASLLKSQNEMQNFNRRGQHQPSAVAHLRLKEEHI*