AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1435210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435210 MtrunA17_Chr4g0042831 96.134 388 12 1 1 385 1 388 0.0 774
Msa1435210 MtrunA17_Chr5g0418191 55.281 445 113 14 2 385 13 432 1.02e-140 407
Msa1435210 MtrunA17_Chr7g0218081 41.057 492 168 15 11 385 33 519 2.64e-101 310
Msa1435210 MtrunA17_Chr7g0243891 43.642 346 129 10 65 375 148 462 3.16e-75 243
Msa1435210 MtrunA17_Chr3g0101131 50.193 259 82 6 137 352 235 489 3.36e-75 244
Msa1435210 MtrunA17_Chr5g0445311 49.802 253 94 4 127 347 182 433 2.12e-74 241
Msa1435210 MtrunA17_Chr5g0445311 36.957 138 76 3 145 272 364 500 2.85e-14 74.3
Msa1435210 MtrunA17_Chr3g0106491 51.271 236 79 5 140 340 193 427 2.55e-71 231
Msa1435210 MtrunA17_Chr4g0004911 46.992 266 96 7 94 340 159 398 8.81e-70 227
Msa1435210 MtrunA17_Chr5g0432161 49.398 249 74 6 140 340 239 483 2.29e-68 226
Msa1435210 MtrunA17_Chr7g0263531 45.174 259 101 5 136 354 180 437 1.94e-65 214
Msa1435210 MtrunA17_Chr5g0447701 39.754 244 116 5 133 347 80 321 1.16e-46 164
Msa1435210 MtrunA17_Chr4g0074001 36.190 315 154 8 71 340 109 421 6.09e-46 164
Msa1435210 MtrunA17_Chr4g0074001 52.381 63 30 0 146 208 360 422 9.82e-13 69.3
Msa1435210 MtrunA17_Chr3g0079691 53.595 153 61 2 224 367 433 584 3.14e-42 157
Msa1435210 MtrunA17_Chr3g0079691 70.312 64 18 1 145 208 280 342 1.65e-23 102
Msa1435210 MtrunA17_Chr3g0079691 60.000 60 23 1 278 337 280 338 1.65e-14 75.1
Msa1435210 MtrunA17_Chr3g0079691 48.837 86 39 2 132 215 485 567 1.71e-14 75.1
Msa1435210 MtrunA17_Chr7g0249311 54.135 133 53 1 212 344 334 458 2.08e-40 151
Msa1435210 MtrunA17_Chr7g0249311 68.657 67 20 1 142 208 176 241 1.19e-23 102
Msa1435210 MtrunA17_Chr7g0249311 41.121 107 50 3 278 372 179 284 1.10e-15 79.0
Msa1435210 MtrunA17_Chr7g0249301 67.708 96 31 0 245 340 259 354 2.09e-39 144
Msa1435210 MtrunA17_Chr7g0249301 63.492 63 22 1 146 208 63 124 5.14e-19 87.8
Msa1435210 MtrunA17_Chr7g0249301 46.154 91 39 2 277 358 61 150 2.20e-15 77.0
Msa1435210 MtrunA17_Chr7g0249301 49.315 73 34 1 132 204 282 351 8.86e-13 68.9
Msa1435210 MtrunA17_Chr1g0188941 61.728 81 31 0 257 337 30 110 2.93e-34 122
Msa1435210 MtrunA17_Chr1g0188941 46.988 83 43 1 124 206 31 112 3.23e-18 79.7
Msa1435210 MtrunA17_Chr5g0447711 32.328 232 141 4 133 349 71 301 9.52e-31 119
Msa1435210 MtrunA17_Chr5g0447711 36.842 76 48 0 145 220 230 305 2.63e-12 67.0
Msa1435210 MtrunA17_Chr4g0051881 51.429 105 51 0 235 339 135 239 1.67e-29 116
Msa1435210 MtrunA17_Chr4g0051881 45.570 79 40 2 131 209 165 240 5.63e-14 72.4
Msa1435210 MtrunA17_Chr1g0194481 48.696 115 56 1 227 338 104 218 3.97e-29 115
Msa1435210 MtrunA17_Chr1g0194481 53.125 64 30 0 145 208 158 221 1.50e-16 79.7
Msa1435210 MtrunA17_Chr7g0270191 62.025 79 30 0 265 343 132 210 1.79e-28 112
Msa1435210 MtrunA17_Chr7g0270191 42.000 100 57 1 109 208 110 208 6.55e-16 77.8
Msa1435210 MtrunA17_Chr8g0335811 57.647 85 35 1 259 343 135 218 4.76e-28 110
Msa1435210 MtrunA17_Chr8g0335811 51.429 70 31 1 132 201 144 210 2.01e-14 72.0
Msa1435210 MtrunA17_Chr5g0443131 61.842 76 29 0 264 339 143 218 8.13e-28 111
Msa1435210 MtrunA17_Chr5g0443131 51.667 60 29 0 145 204 157 216 1.17e-14 73.9
Msa1435210 MtrunA17_Chr3g0129361 47.115 104 43 1 261 364 127 218 1.19e-27 108
Msa1435210 MtrunA17_Chr3g0129361 54.386 57 26 0 145 201 144 200 1.77e-14 72.0
Msa1435210 MtrunA17_Chr8g0383351 52.747 91 38 2 261 346 142 232 2.60e-26 105
Msa1435210 MtrunA17_Chr8g0383351 51.471 68 32 1 134 201 150 216 8.68e-16 76.3
Msa1435210 MtrunA17_Chr7g0224801 56.250 80 35 0 269 348 84 163 2.67e-26 103
Msa1435210 MtrunA17_Chr7g0224801 50.649 77 32 2 145 221 93 163 4.04e-16 75.5
Msa1435210 MtrunA17_Chr2g0294231 59.740 77 31 0 263 339 188 264 3.94e-26 108
Msa1435210 MtrunA17_Chr2g0294231 48.750 80 40 1 129 208 188 266 5.95e-17 81.6
Msa1435210 MtrunA17_Chr5g0418781 57.895 76 32 0 259 334 105 180 1.97e-25 104
Msa1435210 MtrunA17_Chr5g0418781 44.872 78 40 1 145 219 124 201 2.13e-15 75.9
Msa1435210 MtrunA17_Chr8g0386241 47.253 91 48 0 259 349 84 174 5.77e-25 100
Msa1435210 MtrunA17_Chr8g0386241 54.386 57 26 0 145 201 103 159 3.15e-15 73.2
Msa1435210 MtrunA17_Chr8g0383251 45.098 102 43 1 236 337 79 167 1.12e-24 99.8
Msa1435210 MtrunA17_Chr8g0383251 49.206 63 32 0 145 207 108 170 6.71e-12 63.9
Msa1435210 MtrunA17_Chr4g0068541 56.757 74 32 0 265 338 195 268 3.02e-23 100
Msa1435210 MtrunA17_Chr4g0068541 55.000 60 27 0 145 204 208 267 1.68e-16 80.5
Msa1435210 MtrunA17_Chr7g0248721 43.333 120 67 1 215 334 78 196 4.28e-23 96.3
Msa1435210 MtrunA17_Chr7g0248721 51.613 62 29 1 140 201 136 196 1.27e-13 69.7
Msa1435210 MtrunA17_Chr6g0485431 56.000 75 32 1 264 337 140 214 1.06e-22 98.2
Msa1435210 MtrunA17_Chr6g0485431 45.833 72 37 2 138 208 148 218 5.81e-13 69.7
Msa1435210 MtrunA17_Chr1g0147881 50.505 99 37 3 242 339 237 324 1.10e-22 97.8
Msa1435210 MtrunA17_Chr1g0150801 52.778 72 34 0 263 334 87 158 1.27e-22 93.6
Msa1435210 MtrunA17_Chr1g0150801 50.877 57 28 0 145 201 102 158 2.89e-13 67.4
Msa1435210 MtrunA17_Chr3g0129321 52.000 75 36 0 264 338 104 178 1.38e-22 94.7
Msa1435210 MtrunA17_Chr3g0129321 36.364 143 68 3 107 226 62 204 6.11e-15 73.2
Msa1435210 MtrunA17_Chr1g0189391 49.462 93 46 1 265 356 84 176 1.69e-22 97.1
Msa1435210 MtrunA17_Chr1g0189391 42.857 77 38 2 145 215 97 173 2.51e-11 64.3
Msa1435210 MtrunA17_Chr7g0270831 46.809 94 49 1 249 341 187 280 1.69e-22 98.6
Msa1435210 MtrunA17_Chr4g0025061 49.383 81 40 1 260 339 342 422 7.38e-22 97.4
Msa1435210 MtrunA17_Chr4g0025061 33.588 131 65 4 121 230 318 447 5.25e-11 64.3
Msa1435210 MtrunA17_Chr3g0099641 47.561 82 42 1 257 337 230 311 1.11e-21 96.3
Msa1435210 MtrunA17_Chr3g0099641 42.500 80 43 2 146 222 252 331 4.11e-11 64.3
Msa1435210 MtrunA17_Chr2g0288871 50.633 79 38 1 260 337 287 365 1.23e-21 96.7
Msa1435210 MtrunA17_Chr4g0075201 49.383 81 40 1 260 339 249 329 3.21e-21 95.1
Msa1435210 MtrunA17_Chr2g0322391 49.383 81 40 1 260 339 331 411 4.22e-21 95.1
Msa1435210 MtrunA17_Chr2g0322391 40.741 81 45 2 145 222 349 429 3.55e-11 64.7
Msa1435210 MtrunA17_Chr4g0060271 51.316 76 36 1 263 337 240 315 7.46e-21 94.4
Msa1435210 MtrunA17_Chr4g0060271 49.180 61 30 1 145 204 255 315 6.07e-11 63.9
Msa1435210 MtrunA17_Chr4g0051181 50.649 77 37 1 263 338 228 304 1.72e-20 92.8
Msa1435210 MtrunA17_Chr2g0302391 43.617 94 52 1 263 355 196 289 5.05e-20 91.3
Msa1435210 MtrunA17_Chr7g0216891 41.228 114 63 3 225 334 163 276 6.28e-20 91.7
Msa1435210 MtrunA17_Chr4g0071521 47.312 93 37 3 243 334 221 302 1.42e-19 88.6
Msa1435210 MtrunA17_Chr2g0333851 43.689 103 42 3 263 349 139 241 1.95e-19 88.2
Msa1435210 MtrunA17_Chr2g0333851 48.529 68 34 1 146 212 170 237 5.37e-13 69.3
Msa1435210 MtrunA17_Chr5g0401821 52.000 75 35 1 275 348 196 270 2.80e-19 87.0
Msa1435210 MtrunA17_Chr3g0136961 48.837 86 38 4 255 334 110 195 3.00e-19 87.4
Msa1435210 MtrunA17_Chr3g0136961 47.222 72 36 2 146 215 139 210 5.98e-12 65.9
Msa1435210 MtrunA17_Chr4g0025051 46.914 81 42 1 260 339 317 397 4.52e-19 89.0
Msa1435210 MtrunA17_Chr4g0053281 46.739 92 45 2 259 349 250 338 4.93e-19 87.4
Msa1435210 MtrunA17_Chr7g0270051 52.857 70 32 1 279 347 54 123 6.75e-19 85.5
Msa1435210 MtrunA17_Chr7g0270051 39.535 86 44 3 139 218 42 125 2.29e-11 63.9
Msa1435210 MtrunA17_Chr5g0432071 42.969 128 64 5 120 240 79 204 7.54e-19 84.3
Msa1435210 MtrunA17_Chr5g0432071 46.914 81 41 2 278 358 104 182 7.43e-15 73.2
Msa1435210 MtrunA17_Chr7g0238921 59.322 59 24 0 276 334 122 180 8.97e-19 86.3
Msa1435210 MtrunA17_Chr7g0238921 54.386 57 26 0 145 201 124 180 2.24e-14 73.6
Msa1435210 MtrunA17_Chr1g0184691 46.591 88 45 2 258 343 273 360 1.52e-18 86.3
Msa1435210 MtrunA17_Chr2g0284321 47.059 85 42 2 279 362 36 118 5.41e-18 82.0
Msa1435210 MtrunA17_Chr2g0284321 35.043 117 65 3 125 232 7 121 9.66e-12 63.9
Msa1435210 MtrunA17_Chr1g0150281 46.341 82 38 3 259 334 116 197 5.50e-18 83.6
Msa1435210 MtrunA17_Chr8g0379461 51.515 66 31 1 279 343 77 142 6.62e-18 82.4
Msa1435210 MtrunA17_Chr2g0293481 41.584 101 52 2 241 340 236 330 9.94e-18 84.7
Msa1435210 MtrunA17_Chr1g0188961 61.111 54 21 0 298 351 3 56 1.27e-17 76.6
Msa1435210 MtrunA17_Chr8g0387501 40.385 104 53 3 277 371 128 231 4.38e-17 80.5
Msa1435210 MtrunA17_Chr8g0387501 45.455 66 35 1 140 204 124 189 3.70e-12 66.2
Msa1435210 MtrunA17_Chr2g0319961 51.389 72 32 2 279 349 81 150 5.45e-17 80.1
Msa1435210 MtrunA17_Chr4g0024391 37.363 91 56 1 250 339 201 291 6.41e-17 82.0
Msa1435210 MtrunA17_Chr7g0248691 46.154 91 46 3 251 340 129 217 1.36e-16 80.1
Msa1435210 MtrunA17_Chr7g0248691 39.506 81 48 1 125 204 134 214 5.20e-12 66.2
Msa1435210 MtrunA17_Chr4g0001361 52.381 63 29 1 276 337 160 222 1.38e-16 79.7
Msa1435210 MtrunA17_Chr4g0001361 50.000 60 29 1 146 204 163 222 1.27e-11 65.1
Msa1435210 MtrunA17_Chr1g0202461 46.753 77 39 2 265 340 249 324 2.06e-16 80.1
Msa1435210 MtrunA17_Chr1g0202461 41.176 68 39 1 138 204 254 321 1.02e-11 65.9
Msa1435210 MtrunA17_Chr7g0228941 44.156 77 40 2 259 334 35 109 3.56e-16 74.3
Msa1435210 MtrunA17_Chr7g0228941 44.828 58 31 1 146 202 53 110 6.29e-11 59.7
Msa1435210 MtrunA17_Chr2g0289181 49.275 69 34 1 275 342 11 79 6.71e-16 76.6
Msa1435210 MtrunA17_Chr2g0289181 39.796 98 47 3 141 235 10 98 2.64e-11 63.2
Msa1435210 MtrunA17_Chr8g0348311 38.938 113 61 4 249 359 128 234 7.22e-16 78.2
Msa1435210 MtrunA17_Chr8g0348311 42.466 73 41 1 133 204 143 215 1.97e-12 67.8
Msa1435210 MtrunA17_Chr1g0188971 50.633 79 35 2 224 298 4 82 1.20e-15 71.6
Msa1435210 MtrunA17_Chr1g0150271 40.698 86 47 3 256 337 76 161 3.62e-15 74.7
Msa1435210 MtrunA17_Chr3g0139021 47.619 63 32 1 274 335 310 372 7.38e-14 72.4
Msa1435210 MtrunA17_Chr3g0126391 51.724 58 25 1 145 199 133 190 2.16e-13 70.9
Msa1435210 MtrunA17_Chr3g0126391 49.153 59 27 1 277 332 132 190 2.14e-11 64.7
Msa1435210 MtrunA17_Chr8g0347251 50.000 58 26 1 145 199 136 193 2.42e-13 70.5
Msa1435210 MtrunA17_Chr7g0275531 44.928 69 33 2 145 208 118 186 3.74e-13 69.7
Msa1435210 MtrunA17_Chr8g0387981 43.056 72 38 1 131 199 118 189 4.54e-13 69.7
Msa1435210 MtrunA17_Chr8g0387981 53.448 58 24 1 278 332 132 189 4.24e-12 67.0
Msa1435210 MtrunA17_Chr2g0315361 38.462 104 58 3 232 332 105 205 1.71e-12 67.8
Msa1435210 MtrunA17_Chr5g0419241 51.111 45 22 0 260 304 59 103 5.33e-12 62.0
Msa1435210 MtrunA17_Chr7g0244981 48.276 58 27 1 278 332 122 179 4.82e-11 63.2
Msa1435210 MtrunA17_Chr2g0315381 38.542 96 44 3 276 361 142 232 7.48e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1435210 AT1G13960.1 44.082 490 143 14 12 384 37 512 1.50e-103 315
Msa1435210 AT2G03340.1 50.263 380 122 13 60 385 146 512 1.94e-102 312
Msa1435210 AT1G13960.2 49.459 370 115 11 73 384 4 359 2.32e-93 284
Msa1435210 AT3G01080.2 42.369 439 182 15 1 385 38 459 8.44e-85 265
Msa1435210 AT3G01080.1 41.627 418 177 14 1 385 38 421 5.02e-78 247
Msa1435210 AT5G07100.1 43.599 289 126 5 68 340 29 296 2.35e-72 228
Msa1435210 AT5G07100.1 48.750 80 40 1 129 208 219 297 2.45e-15 76.6
Msa1435210 AT5G07100.1 38.947 95 47 1 264 347 92 186 5.52e-14 72.4
Msa1435210 AT5G07100.2 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa1435210 AT5G07100.2 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa1435210 AT5G07100.2 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa1435210 AT5G07100.4 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa1435210 AT5G07100.4 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa1435210 AT5G07100.4 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa1435210 AT5G07100.5 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa1435210 AT5G07100.5 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa1435210 AT5G07100.5 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa1435210 AT5G07100.3 53.589 209 81 2 132 340 11 203 3.66e-72 225
Msa1435210 AT5G07100.3 49.351 77 36 1 132 208 131 204 2.21e-15 75.1
Msa1435210 AT5G07100.3 47.143 70 37 0 278 347 24 93 9.76e-14 70.5
Msa1435210 AT4G26640.1 44.891 274 102 6 116 343 104 374 3.40e-69 226
Msa1435210 AT4G26640.1 51.351 74 34 2 276 348 137 209 1.41e-14 75.5
Msa1435210 AT4G26640.5 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa1435210 AT4G26640.5 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa1435210 AT4G26640.6 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa1435210 AT4G26640.6 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa1435210 AT4G26640.4 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa1435210 AT4G26640.4 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa1435210 AT4G26640.3 44.689 273 102 6 117 343 1 270 4.07e-69 223
Msa1435210 AT4G26640.3 51.351 74 34 2 276 348 33 105 1.23e-14 75.1
Msa1435210 AT4G26640.7 44.891 274 102 6 116 343 136 406 4.17e-69 226
Msa1435210 AT4G26640.7 51.351 74 34 2 276 348 169 241 1.37e-14 75.5
Msa1435210 AT4G26640.2 44.891 274 102 6 116 343 176 446 1.25e-68 226
Msa1435210 AT4G26640.2 51.351 74 34 2 276 348 209 281 1.55e-14 75.5
Msa1435210 AT2G38470.1 49.225 258 82 7 145 354 184 440 8.79e-67 220
Msa1435210 AT2G30250.1 41.869 289 131 7 87 339 102 389 4.57e-61 202
Msa1435210 AT2G04880.2 43.320 247 95 6 141 345 107 350 6.28e-54 185
Msa1435210 AT2G04880.2 44.565 92 49 2 122 213 262 351 5.34e-15 76.6
Msa1435210 AT4G30935.1 37.013 308 142 9 76 340 95 393 1.31e-46 166
Msa1435210 AT4G30935.1 50.794 63 31 0 146 208 332 394 2.43e-12 68.6
Msa1435210 AT5G56270.1 73.469 98 26 0 243 340 452 549 3.04e-43 160
Msa1435210 AT5G56270.1 67.188 64 20 1 145 208 273 335 3.83e-22 99.0
Msa1435210 AT5G56270.1 61.667 60 22 1 278 337 273 331 3.21e-16 80.9
Msa1435210 AT5G56270.1 51.316 76 36 1 129 204 472 546 1.77e-14 75.5
Msa1435210 AT4G12020.11 38.662 269 115 7 73 298 400 661 2.79e-40 152
Msa1435210 AT4G12020.11 50.820 61 29 1 277 337 467 526 3.87e-12 68.6
Msa1435210 AT4G12020.10 38.662 269 115 7 73 298 400 661 3.29e-40 152
Msa1435210 AT4G12020.10 50.820 61 29 1 277 337 467 526 3.27e-12 68.9
Msa1435210 AT4G12020.3 38.662 269 115 7 73 298 400 661 3.29e-40 152
Msa1435210 AT4G12020.3 50.820 61 29 1 277 337 467 526 3.30e-12 68.9
Msa1435210 AT4G12020.1 38.662 269 115 7 73 298 400 661 3.45e-40 152
Msa1435210 AT4G12020.1 50.820 61 29 1 277 337 467 526 3.14e-12 68.9
Msa1435210 AT4G12020.9 38.662 269 115 7 73 298 400 661 3.45e-40 152
Msa1435210 AT4G12020.9 50.820 61 29 1 277 337 467 526 3.14e-12 68.9
Msa1435210 AT4G12020.7 38.662 269 115 7 73 298 400 661 3.51e-40 152
Msa1435210 AT4G12020.7 50.820 61 29 1 277 337 467 526 3.22e-12 68.9
Msa1435210 AT4G12020.6 38.662 269 115 7 73 298 400 661 3.54e-40 152
Msa1435210 AT4G12020.6 50.820 61 29 1 277 337 467 526 3.10e-12 68.9
Msa1435210 AT4G12020.8 38.662 269 115 7 73 298 400 661 3.54e-40 152
Msa1435210 AT4G12020.8 50.820 61 29 1 277 337 467 526 3.10e-12 68.9
Msa1435210 AT4G12020.2 38.662 269 115 7 73 298 400 661 3.66e-40 152
Msa1435210 AT4G12020.2 50.820 61 29 1 277 337 467 526 3.49e-12 68.9
Msa1435210 AT4G12020.5 38.662 269 115 7 73 298 333 594 4.06e-40 152
Msa1435210 AT4G12020.5 50.820 61 29 1 277 337 400 459 3.59e-12 68.9
Msa1435210 AT4G12020.4 38.662 269 115 7 73 298 400 661 4.25e-40 152
Msa1435210 AT4G12020.4 50.820 61 29 1 277 337 467 526 3.58e-12 68.9
Msa1435210 AT4G26440.1 67.647 102 33 0 243 344 337 438 2.03e-39 148
Msa1435210 AT4G26440.1 37.725 167 84 5 61 215 89 247 9.74e-24 103
Msa1435210 AT4G26440.1 56.667 60 25 1 278 337 178 236 9.53e-15 76.3
Msa1435210 AT4G26440.1 50.685 73 33 1 132 204 362 431 7.97e-14 73.6
Msa1435210 AT2G04880.1 53.509 114 49 3 234 345 263 374 4.30e-32 126
Msa1435210 AT2G04880.1 45.055 91 49 1 141 231 107 196 1.64e-17 84.3
Msa1435210 AT2G04880.1 54.688 64 28 1 276 339 109 171 1.09e-15 79.0
Msa1435210 AT2G04880.1 44.565 92 49 2 122 213 286 375 5.38e-15 76.6
Msa1435210 AT3G01080.3 39.407 236 103 10 1 205 38 264 7.03e-32 123
Msa1435210 AT3G01080.3 56.667 60 25 1 278 337 205 263 1.11e-14 74.7
Msa1435210 AT4G18170.1 64.474 76 27 0 263 338 157 232 1.82e-29 116
Msa1435210 AT4G18170.1 44.318 88 46 2 122 209 150 234 6.69e-14 72.4
Msa1435210 AT1G29860.1 64.000 75 27 0 265 339 123 197 2.69e-29 115
Msa1435210 AT1G29860.1 52.308 65 29 1 145 209 136 198 6.38e-14 72.0
Msa1435210 AT5G46350.1 61.039 77 30 0 264 340 169 245 2.23e-28 113
Msa1435210 AT5G46350.1 51.667 60 29 0 145 204 183 242 4.73e-13 70.1
Msa1435210 AT2G44745.1 56.471 85 36 1 259 343 126 209 4.72e-28 110
Msa1435210 AT2G44745.1 51.429 70 31 1 132 201 135 201 1.38e-14 72.8
Msa1435210 AT2G37260.3 48.092 131 55 2 222 350 222 341 5.19e-28 113
Msa1435210 AT2G37260.3 68.750 64 19 1 141 204 81 143 3.01e-23 99.8
Msa1435210 AT2G37260.3 57.377 61 25 1 279 339 86 145 1.20e-14 75.1
Msa1435210 AT2G37260.3 49.123 57 29 0 145 201 269 325 2.99e-11 64.7
Msa1435210 AT2G37260.2 48.092 131 55 2 222 350 220 339 5.33e-28 113
Msa1435210 AT2G37260.2 68.750 64 19 1 141 204 79 141 2.99e-23 99.8
Msa1435210 AT2G37260.2 57.377 61 25 1 279 339 84 143 1.22e-14 74.7
Msa1435210 AT2G37260.2 49.123 57 29 0 145 201 267 323 2.96e-11 64.7
Msa1435210 AT2G37260.1 48.092 131 55 2 222 350 302 421 1.10e-27 113
Msa1435210 AT2G37260.1 68.750 64 19 1 141 204 161 223 4.86e-23 100
Msa1435210 AT2G37260.1 57.377 61 25 1 279 339 166 225 1.45e-14 75.1
Msa1435210 AT2G37260.1 49.123 57 29 0 145 201 349 405 3.38e-11 65.1
Msa1435210 AT5G13080.1 52.381 84 40 0 265 348 54 137 2.48e-27 105
Msa1435210 AT5G13080.1 51.429 70 31 1 132 201 57 123 7.44e-16 74.7
Msa1435210 AT1G64000.1 60.526 76 30 0 259 334 95 170 3.33e-27 107
Msa1435210 AT1G64000.1 52.459 61 29 0 141 201 110 170 6.42e-14 70.5
Msa1435210 AT5G49520.1 64.384 73 26 0 265 337 208 280 4.66e-27 111
Msa1435210 AT5G49520.1 46.053 76 40 1 129 204 206 280 5.32e-15 76.3
Msa1435210 AT1G69310.4 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa1435210 AT1G69310.4 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa1435210 AT1G69310.2 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa1435210 AT1G69310.2 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa1435210 AT1G69310.1 58.974 78 32 0 257 334 126 203 5.63e-27 108
Msa1435210 AT1G69310.1 55.172 58 26 0 145 202 147 204 4.55e-16 78.2
Msa1435210 AT4G39410.1 59.211 76 31 0 259 334 204 279 6.49e-27 109
Msa1435210 AT4G39410.1 50.000 70 32 1 145 214 223 289 1.36e-14 74.3
Msa1435210 AT2G47260.1 63.014 73 27 0 265 337 161 233 8.27e-27 109
Msa1435210 AT2G47260.1 47.500 80 41 1 129 208 159 237 2.17e-15 77.0
Msa1435210 AT5G41570.1 60.526 76 30 0 259 334 79 154 1.96e-26 104
Msa1435210 AT5G41570.1 52.459 61 29 0 141 201 94 154 1.49e-13 68.9
Msa1435210 AT3G01970.1 54.762 84 38 0 265 348 52 135 5.29e-26 102
Msa1435210 AT3G01970.1 50.000 76 35 1 132 207 55 127 2.86e-15 72.8
Msa1435210 AT2G46130.1 56.579 76 33 0 259 334 11 86 2.69e-25 99.4
Msa1435210 AT2G46130.1 50.877 57 28 0 145 201 30 86 3.37e-13 65.9
Msa1435210 AT1G55600.1 61.728 81 31 0 259 339 288 368 5.39e-25 106
Msa1435210 AT1G55600.1 46.667 75 39 1 130 204 293 366 6.60e-12 67.4
Msa1435210 AT4G04450.2 44.068 118 60 3 249 363 169 283 1.17e-24 105
Msa1435210 AT5G26170.1 55.714 70 31 0 265 334 100 169 1.73e-24 99.4
Msa1435210 AT5G26170.1 50.877 57 28 0 145 201 113 169 1.23e-12 66.2
Msa1435210 AT4G04450.1 44.068 118 60 3 249 363 263 377 3.39e-24 104
Msa1435210 AT3G62340.1 43.220 118 61 1 264 375 104 221 4.76e-24 100
Msa1435210 AT3G62340.1 55.000 60 27 0 145 204 118 177 1.37e-14 73.9
Msa1435210 AT2G21900.1 50.000 76 35 1 267 339 95 170 1.23e-22 95.1
Msa1435210 AT2G21900.1 45.205 73 40 0 132 204 96 168 6.51e-15 73.6
Msa1435210 AT5G15130.2 46.809 94 46 2 261 353 168 258 3.23e-22 98.6
Msa1435210 AT5G15130.1 46.809 94 46 2 261 353 210 300 3.48e-22 98.6
Msa1435210 AT1G69310.3 55.128 78 31 1 257 334 126 199 4.06e-22 95.5
Msa1435210 AT1G69310.3 50.000 58 25 1 145 202 147 200 1.75e-11 64.7
Msa1435210 AT4G22070.4 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa1435210 AT4G22070.3 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa1435210 AT4G22070.2 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa1435210 AT4G22070.1 46.591 88 46 1 251 337 270 357 5.18e-22 98.2
Msa1435210 AT1G68150.1 45.000 100 54 1 263 361 220 319 7.52e-22 96.3
Msa1435210 AT1G62300.1 50.633 79 38 1 260 337 294 372 2.79e-21 95.9
Msa1435210 AT5G64810.1 50.704 71 35 0 265 335 97 167 3.36e-21 90.9
Msa1435210 AT5G64810.1 48.276 58 30 0 145 202 110 167 9.20e-12 64.3
Msa1435210 AT2G46130.2 52.632 76 32 1 259 334 11 82 1.38e-20 86.3
Msa1435210 AT4G31550.2 46.535 101 42 3 243 342 221 310 7.15e-20 89.7
Msa1435210 AT4G31550.1 50.588 85 38 2 259 342 230 311 8.37e-20 89.7
Msa1435210 AT4G01720.1 52.632 76 35 1 263 337 224 299 8.46e-20 91.3
Msa1435210 AT1G18860.1 46.988 83 43 1 256 337 217 299 2.34e-19 90.1
Msa1435210 AT2G34830.1 41.584 101 52 2 241 340 184 278 9.48e-19 87.8
Msa1435210 AT4G23550.1 44.944 89 45 2 265 352 127 212 1.02e-18 86.3
Msa1435210 AT4G23550.1 48.333 60 30 1 146 204 141 200 2.33e-12 67.8
Msa1435210 AT2G34830.2 41.584 101 52 2 241 340 193 287 1.02e-18 87.8
Msa1435210 AT2G30590.1 48.718 78 39 1 258 334 293 370 1.40e-18 87.0
Msa1435210 AT2G25000.2 51.429 70 32 2 272 339 96 165 1.50e-18 84.3
Msa1435210 AT2G25000.2 47.619 63 32 1 146 207 104 166 1.15e-11 64.7
Msa1435210 AT2G25000.4 51.429 70 32 2 272 339 96 165 1.50e-18 84.3
Msa1435210 AT2G25000.4 47.619 63 32 1 146 207 104 166 1.15e-11 64.7
Msa1435210 AT4G31800.2 52.113 71 32 2 271 339 103 173 1.51e-18 84.7
Msa1435210 AT1G30650.1 41.584 101 52 2 241 340 186 280 2.45e-18 86.7
Msa1435210 AT4G31800.1 52.113 71 32 2 271 339 168 238 2.52e-18 85.1
Msa1435210 AT2G25000.3 51.429 70 32 2 272 339 118 187 2.90e-18 84.0
Msa1435210 AT2G25000.3 47.619 63 32 1 146 207 126 188 1.47e-11 64.7
Msa1435210 AT2G25000.1 51.429 70 32 2 272 339 139 208 4.36e-18 84.0
Msa1435210 AT2G25000.1 47.619 63 32 1 146 207 147 209 2.03e-11 64.3
Msa1435210 AT2G23320.1 48.101 79 37 2 259 336 224 299 4.93e-18 84.3
Msa1435210 AT1G80840.1 51.562 64 30 1 276 338 144 207 6.88e-18 84.0
Msa1435210 AT1G80840.1 49.275 69 32 2 146 213 147 213 9.29e-13 68.9
Msa1435210 AT1G29280.1 41.584 101 52 2 238 337 40 134 8.25e-18 82.8
Msa1435210 AT2G24570.1 50.649 77 34 2 259 334 227 300 2.38e-17 82.4
Msa1435210 AT3G58710.2 41.284 109 55 3 243 348 41 143 2.40e-17 81.6
Msa1435210 AT5G28650.1 40.777 103 49 3 243 344 238 329 3.41e-17 82.4
Msa1435210 AT4G01250.1 55.556 63 27 1 276 337 126 188 3.78e-17 81.6
Msa1435210 AT4G01250.1 42.466 73 41 1 133 204 116 188 4.47e-12 66.6
Msa1435210 AT4G24240.1 42.105 95 43 3 243 336 257 340 4.41e-17 82.0
Msa1435210 AT3G58710.1 38.406 138 69 5 224 348 10 144 4.47e-17 80.9
Msa1435210 AT3G04670.1 40.777 103 49 3 243 344 238 329 6.02e-17 81.6
Msa1435210 AT5G43290.1 55.932 59 26 0 276 334 112 170 1.18e-16 79.7
Msa1435210 AT5G43290.1 40.625 96 47 1 145 230 114 209 7.79e-14 71.6
Msa1435210 AT5G52830.1 49.254 67 33 1 275 340 162 228 2.20e-15 77.0
Msa1435210 AT5G52830.1 44.000 75 39 2 133 204 151 225 4.75e-13 70.1
Msa1435210 AT1G69810.2 40.000 95 53 3 261 353 128 220 2.33e-15 77.0
Msa1435210 AT1G69810.1 40.000 95 53 3 261 353 186 278 3.34e-15 77.0
Msa1435210 AT5G45050.2 52.381 63 29 1 279 340 1153 1215 3.60e-15 78.2
Msa1435210 AT5G45050.4 52.381 63 29 1 279 340 1042 1104 3.76e-15 77.8
Msa1435210 AT5G45050.1 52.381 63 29 1 279 340 1181 1243 3.82e-15 77.8
Msa1435210 AT3G56400.1 33.094 139 85 3 215 345 56 194 2.26e-14 73.6
Msa1435210 AT4G23810.1 38.710 93 47 2 110 199 130 215 6.84e-14 72.4
Msa1435210 AT1G66560.1 50.000 58 26 1 278 332 103 160 3.81e-13 69.3
Msa1435210 AT5G45260.1 40.659 91 48 3 128 214 1192 1280 6.12e-13 71.2
Msa1435210 AT4G11070.2 33.913 115 64 3 90 199 59 166 2.26e-12 67.4
Msa1435210 AT5G24110.1 46.032 63 31 1 140 199 108 170 2.55e-12 67.4
Msa1435210 AT4G11070.1 33.913 115 64 3 90 199 91 198 3.15e-12 67.4
Msa1435210 AT2G46400.1 37.634 93 52 2 256 342 82 174 1.97e-11 64.7
Msa1435210 AT2G46400.1 44.828 58 29 1 145 199 104 161 8.21e-11 62.8
Msa1435210 AT2G40740.1 43.750 64 33 1 139 199 167 230 3.22e-11 63.9
Msa1435210 AT2G40740.3 43.750 64 33 1 139 199 176 239 4.64e-11 63.5
Msa1435210 AT1G66550.2 45.614 57 28 1 279 332 104 160 8.93e-11 62.4
Msa1435210 AT1G66550.1 45.614 57 28 1 279 332 109 165 9.44e-11 62.4

Find 121 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTCACAAGTAATCTTTA+AGG 0.158601 tig0027653:-26311 Msa1435210:three_prime_UTR
ATACCAGAAATTGGACTTAT+AGG 0.211823 tig0027653:+26240 None:intergenic
ATATGTAATCACCTTGGATA+TGG 0.279577 tig0027653:+27094 None:intergenic
TATGTTGTCAATACAGCTTT+AGG 0.290861 tig0027653:+26556 None:intergenic
GACATTTAATATGTAATTGA+TGG 0.297151 tig0027653:-31136 Msa1435210:five_prime_UTR
AGAAAATGTATTGGTCTCTT+AGG 0.303525 tig0027653:-26104 Msa1435210:three_prime_UTR
AGGCCTATAAGTCCAATTTC+TGG 0.306456 tig0027653:-26243 Msa1435210:three_prime_UTR
TGGTGGCATGTTTGGCTTCA+TGG 0.315986 tig0027653:-26003 Msa1435210:three_prime_UTR
GTAACTGCAATTATTTATAA+AGG 0.324911 tig0027653:-27699 Msa1435210:CDS
GGAGGAGGAGGAAGAGGTGG+TGG 0.331770 tig0027653:-30641 Msa1435210:CDS
GTGGAGCATGGAGGAGGAGG+AGG 0.338095 tig0027653:-30659 Msa1435210:CDS
GAAGAATACTCAACAGAGTT+TGG 0.345418 tig0027653:+27912 None:intergenic
ATACCACTTGGTGGGGAGTT+TGG 0.346229 tig0027653:+26070 None:intergenic
TATGTGAAAGGGATGGATTC+AGG 0.348558 tig0027653:+27224 None:intergenic
GAGCATGGAGGAGGAGGAGG+AGG 0.360875 tig0027653:-30656 Msa1435210:CDS
ACTTTGCTTTCCAACTTGTT+TGG 0.361900 tig0027653:-30737 Msa1435210:CDS
AAGGGATGGATTCAGGAGTT+TGG 0.372111 tig0027653:+27231 None:intergenic
GGAAATGGAGAGTGGCCTTC+AGG 0.377893 tig0027653:-30785 Msa1435210:CDS
ATGTTATTGAATGTTATTGA+TGG 0.379882 tig0027653:+27951 None:intergenic
GGTACTGATGATGCAGAAAA+TGG 0.388413 tig0027653:+27999 None:intergenic
GGATATAGATGGCGCAAATA+CGG 0.389091 tig0027653:-27139 Msa1435210:CDS
CGATGACTGCAAGTCTTTCT+CGG 0.393658 tig0027653:-30708 Msa1435210:CDS
GGATACAACTGGAGGAAGTA+TGG 0.398456 tig0027653:-27828 Msa1435210:CDS
TGAATGGTTGGAGGTGGAAA+TGG 0.401101 tig0027653:-30800 Msa1435210:CDS
CAGAAAATGGATGTTCAGAT+TGG 0.408171 tig0027653:+28012 None:intergenic
TTCTTCTGTGAATGTTGATA+AGG 0.409082 tig0027653:-27862 Msa1435210:CDS
AACAAGTGATGTGGATCTCT+TGG 0.410616 tig0027653:-27167 Msa1435210:CDS
AAGTTATATACGTGAAAGAT+AGG 0.420840 tig0027653:-31025 Msa1435210:five_prime_UTR
GATGTGGAGCATGGAGGAGG+AGG 0.427310 tig0027653:-30662 Msa1435210:CDS
TCAATAAAGTTGTGAATGGT+TGG 0.429419 tig0027653:-30812 Msa1435210:exon
ATAATGAATGGTGGCATGTT+TGG 0.430028 tig0027653:-26011 Msa1435210:three_prime_UTR
GGAGGAGGAAGAGGTGGTGG+TGG 0.430075 tig0027653:-30638 Msa1435210:CDS
GGAGGATTATGAGTGAATTC+AGG 0.431837 tig0027653:-25982 Msa1435210:three_prime_UTR
ATAGGCCTTGGTCAAAACTT+TGG 0.438403 tig0027653:+26258 None:intergenic
CAACTCCGGGTTGCAATGTT+CGG 0.442776 tig0027653:-26606 Msa1435210:CDS
GAAAGATAGGAGAAGATTGC+AGG 0.443121 tig0027653:-31012 Msa1435210:five_prime_UTR
CGCTGGCGACACGTTGGATG+TGG 0.455395 tig0027653:-30678 Msa1435210:CDS
TCTTTCTCGGAGCTCCTCGC+TGG 0.459203 tig0027653:-30695 Msa1435210:CDS
GAAATTGGACTTATAGGCCT+TGG 0.463448 tig0027653:+26246 None:intergenic
TTGTCGTTTGTGAGCTTGCT+AGG 0.468818 tig0027653:+27651 None:intergenic
GATATAGATGGCGCAAATAC+GGG 0.472441 tig0027653:-27138 Msa1435210:CDS
GGAGAGTGGCCTTCAGGTGG+GGG 0.472624 tig0027653:-30779 Msa1435210:CDS
TTGTGAGCTTGCTAGGACGT+GGG 0.474026 tig0027653:+27658 None:intergenic
GAAAGAGTGAGAGTGTATCT+AGG 0.486124 tig0027653:-26035 Msa1435210:three_prime_UTR
CATGTTCACTTCTCCACCTC+AGG 0.493399 tig0027653:-30600 Msa1435210:intron
TTTGTGAGCTTGCTAGGACG+TGG 0.506084 tig0027653:+27657 None:intergenic
TATGTAATCACCTTGGATAT+GGG 0.509899 tig0027653:+27095 None:intergenic
CCTTACCTTCTCTTGAGACC+AGG 0.513180 tig0027653:+27549 None:intergenic
ATAATCAATAAAGTTGTGAA+TGG 0.514219 tig0027653:-30816 Msa1435210:exon
GTTGAACGCGATCCTGTAGA+TGG 0.515499 tig0027653:-27726 Msa1435210:CDS
ATGGAGAGTGGCCTTCAGGT+GGG 0.518947 tig0027653:-30781 Msa1435210:CDS
CTTAGATGTGCCACTGCTGA+AGG 0.520698 tig0027653:+26403 None:intergenic
GTGCACTTGTAATAACTTCG+AGG 0.523109 tig0027653:+27777 None:intergenic
TCTTGGAGGATGGATATAGA+TGG 0.523927 tig0027653:-27150 Msa1435210:CDS
ATGCACTATTATTGCTAGCA+AGG 0.524276 tig0027653:+26482 None:intergenic
GCTGTATTGACAACATATGA+AGG 0.524886 tig0027653:-26550 Msa1435210:CDS
ACAAGTGACAGTGAGGAAGA+AGG 0.529857 tig0027653:-27600 Msa1435210:CDS
GAAGATTGCAGGCATAGCAT+AGG 0.533234 tig0027653:-31001 Msa1435210:five_prime_UTR
CTATTACAAATGCACAACTC+CGG 0.535365 tig0027653:-26620 Msa1435210:CDS
TATTGGTCTCTTAGGAGTAA+TGG 0.535384 tig0027653:-26096 Msa1435210:three_prime_UTR
TGACTGTTAGTCTTAGCTGC+TGG 0.535682 tig0027653:+26508 None:intergenic
AGCTAAGCATACCACTTGGT+GGG 0.536456 tig0027653:+26062 None:intergenic
GAGAGTGGCCTTCAGGTGGG+GGG 0.537568 tig0027653:-30778 Msa1435210:CDS
TTGAGACAGTCCTATGTGAA+AGG 0.538082 tig0027653:+27212 None:intergenic
TATTACAAATGCACAACTCC+GGG 0.539125 tig0027653:-26619 Msa1435210:CDS
GAAAGCAAAGTCATGGGACC+TGG 0.539402 tig0027653:+30749 None:intergenic
CAAGTTGGAAAGCAAAGTCA+TGG 0.540093 tig0027653:+30742 None:intergenic
CTAATGACGACGGATACAAC+TGG 0.541447 tig0027653:-27839 Msa1435210:CDS
AATGGAGAGTGGCCTTCAGG+TGG 0.546609 tig0027653:-30782 Msa1435210:CDS
ATCGTTGTCACCAAACAAGT+TGG 0.548706 tig0027653:+30727 None:intergenic
GCAGTTACATGACCATCTAC+AGG 0.555080 tig0027653:+27714 None:intergenic
TGAGACAGTCCTATGTGAAA+GGG 0.555370 tig0027653:+27213 None:intergenic
TGGAGAGTGGCCTTCAGGTG+GGG 0.556179 tig0027653:-30780 Msa1435210:CDS
TTGGATGTGGAGCATGGAGG+AGG 0.558763 tig0027653:-30665 Msa1435210:CDS
TTGTGTCAATGAGGTACTGT+TGG 0.566128 tig0027653:+27977 None:intergenic
AGATGCAGAATTTCAACAGA+AGG 0.567059 tig0027653:-26438 Msa1435210:CDS
TGGTGGTGGCTTGTCACCGT+TGG 0.569092 tig0027653:-30624 Msa1435210:CDS
AAGCTAAGCATACCACTTGG+TGG 0.571427 tig0027653:+26061 None:intergenic
GATGCAGAATTTCAACAGAA+GGG 0.571983 tig0027653:-26437 Msa1435210:CDS
AGTGGCACATCTAAGATTGA+AGG 0.580831 tig0027653:-26395 Msa1435210:CDS
GCATGTTGAGAGGGTTTCAA+CGG 0.585716 tig0027653:-26581 Msa1435210:CDS
ATGAACCTGGTCTCAAGAGA+AGG 0.587168 tig0027653:-27554 Msa1435210:intron
GTGTATCTAGGTATAATGAA+TGG 0.587900 tig0027653:-26023 Msa1435210:three_prime_UTR
TGTTCGGAAGCATGTTGAGA+GGG 0.594276 tig0027653:-26590 Msa1435210:CDS
GACACGTTGGATGTGGAGCA+TGG 0.595589 tig0027653:-30671 Msa1435210:CDS
GAAGTATATATTACCTGAGG+TGG 0.596349 tig0027653:+30587 None:intergenic
TTGGATTTGAGCATTTGAGT+AGG 0.596492 tig0027653:+28031 None:intergenic
AAGTTGTGAATGGTTGGAGG+TGG 0.597067 tig0027653:-30806 Msa1435210:exon
AAGTGATGTGGATCTCTTGG+AGG 0.597649 tig0027653:-27164 Msa1435210:CDS
GCTAAGCATACCACTTGGTG+GGG 0.608157 tig0027653:+26063 None:intergenic
TCTTTCATCTATCTAAAGCG+TGG 0.612176 tig0027653:-30964 Msa1435210:five_prime_UTR
ACTGAAGTAGATTATGAACC+TGG 0.614019 tig0027653:-27567 Msa1435210:CDS
ATGTTCGGAAGCATGTTGAG+AGG 0.614164 tig0027653:-26591 Msa1435210:CDS
CTGAGGTGGAGAAGTGAACA+TGG 0.615388 tig0027653:+30601 None:intergenic
GCTCCTCGCTGGCGACACGT+TGG 0.617837 tig0027653:-30684 Msa1435210:CDS
ACAGTCCTATGTGAAAGGGA+TGG 0.625637 tig0027653:+27217 None:intergenic
TACGGGCAGAAAGTTGTCAA+AGG 0.626111 tig0027653:-27121 Msa1435210:CDS
TCAAAGGCAACCCATATCCA+AGG 0.626448 tig0027653:-27105 Msa1435210:intron
TATGGACAGAAACAAGTGAA+AGG 0.627695 tig0027653:-27810 Msa1435210:CDS
GATGTGGATCTCTTGGAGGA+TGG 0.628338 tig0027653:-27160 Msa1435210:CDS
AAGTTGGAAAGCAAAGTCAT+GGG 0.630381 tig0027653:+30743 None:intergenic
TCAACATCAGCCTTCAGCAG+TGG 0.630519 tig0027653:-26413 Msa1435210:CDS
ATCAAGCTAAGCATACCACT+TGG 0.631131 tig0027653:+26058 None:intergenic
TGAATCCATCCCTTTCACAT+AGG 0.631552 tig0027653:-27222 Msa1435210:CDS
ATGCAGAATTTCAACAGAAG+GGG 0.631709 tig0027653:-26436 Msa1435210:CDS
TGCTTCCGAACATTGCAACC+CGG 0.632799 tig0027653:+26601 None:intergenic
ATAAAGTTGTGAATGGTTGG+AGG 0.633267 tig0027653:-30809 Msa1435210:exon
TGTGTCAATGAGGTACTGTT+GGG 0.640910 tig0027653:+27978 None:intergenic
TTATAGATCATATGTGTGAG+TGG 0.642184 tig0027653:-26204 Msa1435210:three_prime_UTR
TATCTAGGTATAATGAATGG+TGG 0.644969 tig0027653:-26020 Msa1435210:three_prime_UTR
GTCAGGAACAAGTGACAGTG+AGG 0.650399 tig0027653:-27607 Msa1435210:CDS
TGATGGAACTTGTGTCAATG+AGG 0.653592 tig0027653:+27968 None:intergenic
GGAGAAGTGAACATGGCCAA+CGG 0.663309 tig0027653:+30608 None:intergenic
TGTGCAAACAACAAGTGATG+TGG 0.666996 tig0027653:-27176 Msa1435210:CDS
GTTGATAAGGCTAATGACGA+CGG 0.676828 tig0027653:-27849 Msa1435210:CDS
CATCCAACGTGTCGCCAGCG+AGG 0.677352 tig0027653:+30681 None:intergenic
TTGGAGGTGGAAATGGAGAG+TGG 0.686540 tig0027653:-30793 Msa1435210:CDS
TGGCATGTTTGGCTTCATGG+AGG 0.697539 tig0027653:-26000 Msa1435210:three_prime_UTR
TCACCAAACTCCCCACCAAG+TGG 0.700564 tig0027653:-26073 Msa1435210:three_prime_UTR
ATGACGACGGATACAACTGG+AGG 0.731932 tig0027653:-27836 Msa1435210:CDS
ACGTTGGATGTGGAGCATGG+AGG 0.754990 tig0027653:-30668 Msa1435210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTAAAAAAAAACATA+TGG - tig0027653:28597-28616 Msa1435210:intron 10.0%
!!! TTTTAAAAAAATTACACTAA+CGG + tig0027653:29718-29737 None:intergenic 10.0%
!!! ATCTTTATAGTTTTATTTTT+TGG - tig0027653:31048-31067 Msa1435210:five_prime_UTR 10.0%
!! TATATAAATTAGCATATAGA+AGG + tig0027653:27188-27207 None:intergenic 15.0%
!! AATAATGATGAAAATGATAA+TGG - tig0027653:27313-27332 Msa1435210:intron 15.0%
!!! TACTCAATTAAAAAGTATAT+TGG - tig0027653:28334-28353 Msa1435210:intron 15.0%
!!! ATATGTTTATTCCTTTTTTT+AGG + tig0027653:28571-28590 None:intergenic 15.0%
!!! AAAAAACATATGGATTTTAA+TGG - tig0027653:28607-28626 Msa1435210:intron 15.0%
!!! AAATTTTGTCTATAAAGTAT+CGG - tig0027653:28666-28685 Msa1435210:intron 15.0%
!!! AATACTTAAGTAATTCTTTT+TGG + tig0027653:28735-28754 None:intergenic 15.0%
!!! TTTCATATTTTATACAAGAT+TGG - tig0027653:30829-30848 Msa1435210:five_prime_UTR 15.0%
!! GACATTTAATATGTAATTGA+TGG - tig0027653:26039-26058 Msa1435210:three_prime_UTR 20.0%
!!! GACTTTTTTTTGTACAAATT+AGG - tig0027653:26081-26100 Msa1435210:three_prime_UTR 20.0%
!!! ACTTTTAAGACTTATAGATA+AGG - tig0027653:26106-26125 Msa1435210:three_prime_UTR 20.0%
!!! CTTTTAAGACTTATAGATAA+GGG - tig0027653:26107-26126 Msa1435210:three_prime_UTR 20.0%
!!! TTTTAAGACTTATAGATAAG+GGG - tig0027653:26108-26127 Msa1435210:three_prime_UTR 20.0%
!! ATAATCAATAAAGTTGTGAA+TGG - tig0027653:26359-26378 Msa1435210:three_prime_UTR 20.0%
!! TCAATTATCATAAATTTGCA+AGG + tig0027653:28023-28042 None:intergenic 20.0%
!!! GTAGTTTTGATTAAAATTCT+TGG - tig0027653:27391-27410 Msa1435210:intron 20.0%
!!! AAGTATTTTCTTATGTGTAT+TGG - tig0027653:27450-27469 Msa1435210:intron 20.0%
!! AAGTTTATAATCTATGACTA+AGG - tig0027653:27763-27782 Msa1435210:CDS 20.0%
!! CATATAAATTAGCATATAGA+AGG - tig0027653:27980-27999 Msa1435210:CDS 20.0%
!! TCAATTATCATAAATTTGCA+AGG - tig0027653:28023-28042 Msa1435210:CDS 20.0%
!!! CAATTAAAAAGTATATTGGT+TGG - tig0027653:28338-28357 Msa1435210:intron 20.0%
!! GGATAAATTCAAAAATTCTT+CGG + tig0027653:28714-28733 None:intergenic 20.0%
!! AAATTCAACCACTATTTATT+TGG - tig0027653:29041-29060 Msa1435210:intron 20.0%
!! ATGTTATTGAATGTTATTGA+TGG + tig0027653:29227-29246 None:intergenic 20.0%
!! GTAACTGCAATTATTTATAA+AGG - tig0027653:29476-29495 Msa1435210:intron 20.0%
!! ATACATCTACTTAATTATGT+AGG - tig0027653:30104-30123 Msa1435210:intron 20.0%
!! TACATCTACTTAATTATGTA+GGG - tig0027653:30105-30124 Msa1435210:intron 20.0%
!! AAATTAGTGATACAACTTTA+GGG + tig0027653:30145-30164 None:intergenic 20.0%
!! TAAATTAGTGATACAACTTT+AGG + tig0027653:30146-30165 None:intergenic 20.0%
!!! ATTTTTTGGAGAAAATGTAT+TGG - tig0027653:31062-31081 Msa1435210:five_prime_UTR 20.0%
! AAGTTATATACGTGAAAGAT+AGG - tig0027653:26150-26169 Msa1435210:three_prime_UTR 25.0%
!! TTTAATTTCATCGAGCTTAA+GGG + tig0027653:26694-26713 None:intergenic 25.0%
!!! TTTTAATTTCATCGAGCTTA+AGG + tig0027653:26695-26714 None:intergenic 25.0%
! ACATCTCATTCTCTAAATAT+AGG - tig0027653:26721-26740 Msa1435210:intron 25.0%
!!! TACAACTACGAATTTTTTTC+AGG + tig0027653:26807-26826 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG + tig0027653:28235-28254 None:intergenic 25.0%
! ACTATATAATGTGAAGTTGA+TGG - tig0027653:27239-27258 Msa1435210:CDS 25.0%
! ATTATTGATAAACTACAAGG+GGG + tig0027653:27571-27590 None:intergenic 25.0%
! CATTATTGATAAACTACAAG+GGG + tig0027653:27572-27591 None:intergenic 25.0%
! CCATTATTGATAAACTACAA+GGG + tig0027653:27573-27592 None:intergenic 25.0%
! ACCATTATTGATAAACTACA+AGG + tig0027653:27574-27593 None:intergenic 25.0%
! ACCATTATTGATAAACTACA+GGG + tig0027653:27574-27593 None:intergenic 25.0%
! TATGCTTATACTGTCATTAT+AGG + tig0027653:27842-27861 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG - tig0027653:28235-28254 Msa1435210:intron 25.0%
! AAAATGAGTGATATCTTTCT+TGG + tig0027653:28383-28402 None:intergenic 25.0%
! ATAAACGTTCTCCTAAAAAA+AGG - tig0027653:28557-28576 Msa1435210:intron 25.0%
! CTACTATATATGCTTCAATT+AGG - tig0027653:28875-28894 Msa1435210:intron 25.0%
! TATATGCTTCAATTAGGATA+AGG - tig0027653:28881-28900 Msa1435210:intron 25.0%
! TGGAATTGGAATATTAAACA+AGG - tig0027653:28949-28968 Msa1435210:intron 25.0%
! TAATTTAATCCAAACTTCCA+AGG + tig0027653:29004-29023 None:intergenic 25.0%
! CTTAAAAGTCATACAAATGA+TGG + tig0027653:29759-29778 None:intergenic 25.0%
!! CATCATTTGTATGACTTTTA+AGG - tig0027653:29757-29776 Msa1435210:intron 25.0%
! AATCATAATTCATAGCTGTT+TGG + tig0027653:29815-29834 None:intergenic 25.0%
! TGATTGATCGACAATATAAA+AGG - tig0027653:29830-29849 Msa1435210:intron 25.0%
! ATGTATATATGTAATCACCT+TGG + tig0027653:30090-30109 None:intergenic 25.0%
! GACTAAACTCTATAATTTCA+AGG - tig0027653:30320-30339 Msa1435210:intron 25.0%
TCAATAAAGTTGTGAATGGT+TGG - tig0027653:26363-26382 Msa1435210:exon 30.0%
GTTGAAGTATATATTACCTG+AGG + tig0027653:26594-26613 None:intergenic 30.0%
TTAATTTCATCGAGCTTAAG+GGG + tig0027653:26693-26712 None:intergenic 30.0%
TTGATATTTCGTTAACTGCA+GGG + tig0027653:28266-28285 None:intergenic 30.0%
ATTGATATTTCGTTAACTGC+AGG + tig0027653:28265-28284 None:intergenic 30.0%
ACTAACGTTTATCAATTTCG+GGG + tig0027653:28237-28256 None:intergenic 30.0%
GACTAACGTTTATCAATTTC+GGG + tig0027653:28236-28255 None:intergenic 30.0%
AGAAGGAATAAGATTCATAG+TGG + tig0027653:27997-28016 None:intergenic 30.0%
GATAGTATTGTTGTGTATGT+TGG - tig0027653:27369-27388 Msa1435210:intron 30.0%
GTATTGGAAACAAATGTAAG+AGG - tig0027653:27466-27485 Msa1435210:intron 30.0%
CCCTTGTAGTTTATCAATAA+TGG - tig0027653:27570-27589 Msa1435210:CDS 30.0%
CATTATTGATAAACTACAGG+GGG + tig0027653:27603-27622 None:intergenic 30.0%
CCATTATTGATAAACTACAG+GGG + tig0027653:27604-27623 None:intergenic 30.0%
GACCATTATTGATAAACTAC+AGG + tig0027653:27575-27594 None:intergenic 30.0%
CAAATAATTCAAATACAGGG+GGG + tig0027653:27634-27653 None:intergenic 30.0%
CCAAATAATTCAAATACAGG+GGG + tig0027653:27635-27654 None:intergenic 30.0%
CCCAAATAATTCAAATACAG+GGG + tig0027653:27636-27655 None:intergenic 30.0%
CCCCTGTATTTGAATTATTT+GGG - tig0027653:27633-27652 Msa1435210:CDS 30.0%
GCCCAAATAATTCAAATACA+GGG + tig0027653:27637-27656 None:intergenic 30.0%
AGCCCAAATAATTCAAATAC+AGG + tig0027653:27638-27657 None:intergenic 30.0%
AGAAGGAATAAGATTCATAG+TGG - tig0027653:27997-28016 Msa1435210:CDS 30.0%
GACTAACGTTTATCAATTTC+GGG - tig0027653:28236-28255 Msa1435210:intron 30.0%
ACTAACGTTTATCAATTTCG+GGG - tig0027653:28237-28256 Msa1435210:intron 30.0%
ATTGATATTTCGTTAACTGC+AGG - tig0027653:28265-28284 Msa1435210:intron 30.0%
TTGATATTTCGTTAACTGCA+GGG - tig0027653:28266-28285 Msa1435210:intron 30.0%
AGTATTTATTGCTCACGAAA+AGG - tig0027653:28416-28435 Msa1435210:intron 30.0%
! CTTGATCTCAAGTTTCATTT+TGG - tig0027653:28826-28845 Msa1435210:intron 30.0%
! CACATTTGATTAGCTAAGTT+AGG - tig0027653:28908-28927 Msa1435210:intron 30.0%
TTAACCAGCCAAATAAATAG+TGG + tig0027653:29052-29071 None:intergenic 30.0%
TTCTTCTGTGAATGTTGATA+AGG - tig0027653:29313-29332 Msa1435210:intron 30.0%
!!! TAGTTTTATGTGACGATGTT+AGG - tig0027653:29892-29911 Msa1435210:intron 30.0%
! GTTGTTTGCACAATGATTTT+AGG + tig0027653:29991-30010 None:intergenic 30.0%
TATGTAATCACCTTGGATAT+GGG + tig0027653:30083-30102 None:intergenic 30.0%
ATATGTAATCACCTTGGATA+TGG + tig0027653:30084-30103 None:intergenic 30.0%
CAAAGTTTCGTTTGTTTCAA+AGG + tig0027653:30236-30255 None:intergenic 30.0%
AATTTCAAGGTCAAGAATGT+TGG - tig0027653:30333-30352 Msa1435210:intron 30.0%
!! TCTAATTGTTGATGACCATT+AGG - tig0027653:30361-30380 Msa1435210:intron 30.0%
ATGTAACTAAGCATTTCTGA+GGG + tig0027653:30419-30438 None:intergenic 30.0%
AATGTAACTAAGCATTTCTG+AGG + tig0027653:30420-30439 None:intergenic 30.0%
!!! TCACTATCTTTTCTAGAACA+TGG + tig0027653:30507-30526 None:intergenic 30.0%
GCATTCTTGTATCATAATGT+AGG - tig0027653:30530-30549 Msa1435210:intron 30.0%
TATGTTGTCAATACAGCTTT+AGG + tig0027653:30622-30641 None:intergenic 30.0%
GAACTCACAAGTAATCTTTA+AGG - tig0027653:30864-30883 Msa1435210:five_prime_UTR 30.0%
!!! CTCTTTTGTTTTTGAATGTG+AGG - tig0027653:30894-30913 Msa1435210:five_prime_UTR 30.0%
ATACCAGAAATTGGACTTAT+AGG + tig0027653:30938-30957 None:intergenic 30.0%
!! GCTTTTTCTATACCAGAAAT+TGG + tig0027653:30947-30966 None:intergenic 30.0%
TTATAGATCATATGTGTGAG+TGG - tig0027653:30971-30990 Msa1435210:five_prime_UTR 30.0%
! AGAAAATGTATTGGTCTCTT+AGG - tig0027653:31071-31090 Msa1435210:five_prime_UTR 30.0%
GTGTATCTAGGTATAATGAA+TGG - tig0027653:31152-31171 Msa1435210:five_prime_UTR 30.0%
TATCTAGGTATAATGAATGG+TGG - tig0027653:31155-31174 Msa1435210:five_prime_UTR 30.0%
! TCTTTCATCTATCTAAAGCG+TGG - tig0027653:26211-26230 Msa1435210:three_prime_UTR 35.0%
ATAAAGTTGTGAATGGTTGG+AGG - tig0027653:26366-26385 Msa1435210:exon 35.0%
AAGTTGGAAAGCAAAGTCAT+GGG + tig0027653:26435-26454 None:intergenic 35.0%
! ACTTTGCTTTCCAACTTGTT+TGG - tig0027653:26438-26457 Msa1435210:CDS 35.0%
GAAGTATATATTACCTGAGG+TGG + tig0027653:26591-26610 None:intergenic 35.0%
TGATATTTCGTTAACTGCAG+GGG + tig0027653:28267-28286 None:intergenic 35.0%
TAACGTTTATCAATTTCGGG+GGG + tig0027653:28239-28258 None:intergenic 35.0%
CTAACGTTTATCAATTTCGG+GGG + tig0027653:28238-28257 None:intergenic 35.0%
CCCCTGTAGTTTATCAATAA+TGG - tig0027653:27601-27620 Msa1435210:CDS 35.0%
CCCCCTGTATTTGAATTATT+TGG - tig0027653:27632-27651 Msa1435210:CDS 35.0%
ACAAACAGAACTAGCATAAC+AGG + tig0027653:27676-27695 None:intergenic 35.0%
!! TGTTATGCTAGTTCTGTTTG+TGG - tig0027653:27675-27694 Msa1435210:CDS 35.0%
TGTTGGATGGAGGAAATTAA+CGG - tig0027653:28201-28220 Msa1435210:intron 35.0%
CTAACGTTTATCAATTTCGG+GGG - tig0027653:28238-28257 Msa1435210:intron 35.0%
TAACGTTTATCAATTTCGGG+GGG - tig0027653:28239-28258 Msa1435210:intron 35.0%
TGATATTTCGTTAACTGCAG+GGG - tig0027653:28267-28286 Msa1435210:intron 35.0%
ATTTATTGCTCACGAAAAGG+AGG - tig0027653:28419-28438 Msa1435210:intron 35.0%
TTCTTCGGTATCTTAGAGTT+TGG + tig0027653:28699-28718 None:intergenic 35.0%
CTAAATGATCAAGTGCTTTC+TGG - tig0027653:28852-28871 Msa1435210:intron 35.0%
CACGAAATCAAAAGATACCT+TGG - tig0027653:28984-29003 Msa1435210:intron 35.0%
CAAAAGATACCTTGGAAGTT+TGG - tig0027653:28992-29011 Msa1435210:intron 35.0%
TCAACCACTATTTATTTGGC+TGG - tig0027653:29045-29064 Msa1435210:intron 35.0%
TTGGATTTGAGCATTTGAGT+AGG + tig0027653:29147-29166 None:intergenic 35.0%
CAGAAAATGGATGTTCAGAT+TGG + tig0027653:29166-29185 None:intergenic 35.0%
GAAGAATACTCAACAGAGTT+TGG + tig0027653:29266-29285 None:intergenic 35.0%
TATGGACAGAAACAAGTGAA+AGG - tig0027653:29365-29384 Msa1435210:intron 35.0%
ACTGAAGTAGATTATGAACC+TGG - tig0027653:29608-29627 Msa1435210:intron 35.0%
!! AATTTTGTGTCTGAAGTTGC+AGG - tig0027653:30190-30209 Msa1435210:intron 35.0%
TAACATTAGTCCACACATTC+AGG - tig0027653:30286-30305 Msa1435210:intron 35.0%
CTAAAATTGTCCTGAATGTG+TGG + tig0027653:30299-30318 None:intergenic 35.0%
CTATTACAAATGCACAACTC+CGG - tig0027653:30555-30574 Msa1435210:intron 35.0%
TATTACAAATGCACAACTCC+GGG - tig0027653:30556-30575 Msa1435210:intron 35.0%
! GCTGTATTGACAACATATGA+AGG - tig0027653:30625-30644 Msa1435210:CDS 35.0%
ATGCACTATTATTGCTAGCA+AGG + tig0027653:30696-30715 None:intergenic 35.0%
AGATGCAGAATTTCAACAGA+AGG - tig0027653:30737-30756 Msa1435210:CDS 35.0%
GATGCAGAATTTCAACAGAA+GGG - tig0027653:30738-30757 Msa1435210:CDS 35.0%
ATGCAGAATTTCAACAGAAG+GGG - tig0027653:30739-30758 Msa1435210:CDS 35.0%
! TATTGGTCTCTTAGGAGTAA+TGG - tig0027653:31079-31098 Msa1435210:five_prime_UTR 35.0%
ATAATGAATGGTGGCATGTT+TGG - tig0027653:31164-31183 Msa1435210:five_prime_UTR 35.0%
GAAAGATAGGAGAAGATTGC+AGG - tig0027653:26163-26182 Msa1435210:three_prime_UTR 40.0%
! CAAGTTGGAAAGCAAAGTCA+TGG + tig0027653:26436-26455 None:intergenic 40.0%
ATCGTTGTCACCAAACAAGT+TGG + tig0027653:26451-26470 None:intergenic 40.0%
CTTCCATAGAGTCAAGTCAA+CGG - tig0027653:26652-26671 Msa1435210:intron 40.0%
!! TTACCGTTGACTTGACTCTA+TGG + tig0027653:26658-26677 None:intergenic 40.0%
ATATTTCGTTAACTGCAGGG+GGG + tig0027653:28269-28288 None:intergenic 40.0%
GATATTTCGTTAACTGCAGG+GGG + tig0027653:28268-28287 None:intergenic 40.0%
AACGTTTATCAATTTCGGGG+GGG + tig0027653:28240-28259 None:intergenic 40.0%
TGTCGGATGGAGGAAATTAA+CGG + tig0027653:26968-26987 None:intergenic 40.0%
!! GTTGATGGTGTGTATCGATT+TGG - tig0027653:27254-27273 Msa1435210:intron 40.0%
!! TGTATCGATTTGGACAGAAG+AGG - tig0027653:27264-27283 Msa1435210:intron 40.0%
!! GTATCGATTTGGACAGAAGA+GGG - tig0027653:27265-27284 Msa1435210:intron 40.0%
!! TATCGATTTGGACAGAAGAG+GGG - tig0027653:27266-27285 Msa1435210:intron 40.0%
! GGGAATTGAAGCTTGCTTTA+GGG - tig0027653:27287-27306 Msa1435210:intron 40.0%
! GGTTTTTGACACGAACTTGT+TGG + tig0027653:27550-27569 None:intergenic 40.0%
!! ATGCTAGTTCTGTTTGTGGT+TGG - tig0027653:27679-27698 Msa1435210:CDS 40.0%
AACGTTTATCAATTTCGGGG+GGG - tig0027653:28240-28259 Msa1435210:intron 40.0%
GATATTTCGTTAACTGCAGG+GGG - tig0027653:28268-28287 Msa1435210:intron 40.0%
ATATTTCGTTAACTGCAGGG+GGG - tig0027653:28269-28288 Msa1435210:intron 40.0%
TCGGTATCTTAGAGTTTGGT+CGG + tig0027653:28695-28714 None:intergenic 40.0%
GGATTTACTGCACATCTGAT+TGG - tig0027653:28929-28948 Msa1435210:intron 40.0%
ACTGCACATCTGATTGGAAT+TGG - tig0027653:28935-28954 Msa1435210:intron 40.0%
!! GGTACTGATGATGCAGAAAA+TGG + tig0027653:29179-29198 None:intergenic 40.0%
!! TGTGTCAATGAGGTACTGTT+GGG + tig0027653:29200-29219 None:intergenic 40.0%
!! TTGTGTCAATGAGGTACTGT+TGG + tig0027653:29201-29220 None:intergenic 40.0%
TGATGGAACTTGTGTCAATG+AGG + tig0027653:29210-29229 None:intergenic 40.0%
! GTTGATAAGGCTAATGACGA+CGG - tig0027653:29326-29345 Msa1435210:intron 40.0%
GTGCACTTGTAATAACTTCG+AGG + tig0027653:29401-29420 None:intergenic 40.0%
! TTTTTCGTCACAAGACAGCT+TGG + tig0027653:29428-29447 None:intergenic 40.0%
TGTGCAAACAACAAGTGATG+TGG - tig0027653:29999-30018 Msa1435210:intron 40.0%
AACAAGTGATGTGGATCTCT+TGG - tig0027653:30008-30027 Msa1435210:intron 40.0%
TCTTGGAGGATGGATATAGA+TGG - tig0027653:30025-30044 Msa1435210:intron 40.0%
GGATATAGATGGCGCAAATA+CGG - tig0027653:30036-30055 Msa1435210:intron 40.0%
GATATAGATGGCGCAAATAC+GGG - tig0027653:30037-30056 Msa1435210:intron 40.0%
GCTCTAGTAGACAATCCTAA+TGG + tig0027653:30379-30398 None:intergenic 40.0%
! AGTGGCACATCTAAGATTGA+AGG - tig0027653:30780-30799 Msa1435210:CDS 40.0%
ATAGGCCTTGGTCAAAACTT+TGG + tig0027653:30920-30939 None:intergenic 40.0%
GAAATTGGACTTATAGGCCT+TGG + tig0027653:30932-30951 None:intergenic 40.0%
AGGCCTATAAGTCCAATTTC+TGG - tig0027653:30932-30951 Msa1435210:five_prime_UTR 40.0%
ATCAAGCTAAGCATACCACT+TGG + tig0027653:31120-31139 None:intergenic 40.0%
! GAAAGAGTGAGAGTGTATCT+AGG - tig0027653:31140-31159 Msa1435210:five_prime_UTR 40.0%
GGAGGATTATGAGTGAATTC+AGG - tig0027653:31193-31212 Msa1435210:five_prime_UTR 40.0%
GAAGATTGCAGGCATAGCAT+AGG - tig0027653:26174-26193 Msa1435210:three_prime_UTR 45.0%
AAGTTGTGAATGGTTGGAGG+TGG - tig0027653:26369-26388 Msa1435210:exon 45.0%
TGAATGGTTGGAGGTGGAAA+TGG - tig0027653:26375-26394 Msa1435210:exon 45.0%
CGATGACTGCAAGTCTTTCT+CGG - tig0027653:26467-26486 Msa1435210:CDS 45.0%
ATCGAGCTTAAGGGGTCATA+TGG + tig0027653:26685-26704 None:intergenic 45.0%
!! TTGCAATTTCGGGGGGTATT+TGG + tig0027653:26864-26883 None:intergenic 45.0%
AAATACCCCCCGAAATTGCA+AGG - tig0027653:26863-26882 Msa1435210:intron 45.0%
ATTGACGCGCCTTGCAATTT+CGG + tig0027653:28294-28313 None:intergenic 45.0%
ATGGAGGAAATTAACGGAGG+GGG + tig0027653:28207-28226 None:intergenic 45.0%
GATGGAGGAAATTAACGGAG+GGG + tig0027653:28206-28225 None:intergenic 45.0%
GGATGGAGGAAATTAACGGA+GGG + tig0027653:28205-28224 None:intergenic 45.0%
TAACTGCCACATCAGCATGT+CGG + tig0027653:28184-28203 None:intergenic 45.0%
!! ATCGATTTGGACAGAAGAGG+GGG - tig0027653:27267-27286 Msa1435210:intron 45.0%
! GGGGAATTGAAGCTTGCTTT+AGG - tig0027653:27286-27305 Msa1435210:intron 45.0%
!! CTAGTTCTGTTTGTGGTTGG+TGG - tig0027653:27682-27701 Msa1435210:CDS 45.0%
TAACTGCCACATCAGCATGT+TGG - tig0027653:28184-28203 Msa1435210:intron 45.0%
TGGATGGAGGAAATTAACGG+AGG - tig0027653:28204-28223 Msa1435210:intron 45.0%
GGATGGAGGAAATTAACGGA+GGG - tig0027653:28205-28224 Msa1435210:intron 45.0%
GATGGAGGAAATTAACGGAG+GGG - tig0027653:28206-28225 Msa1435210:intron 45.0%
ATGGAGGAAATTAACGGAGG+GGG - tig0027653:28207-28226 Msa1435210:intron 45.0%
ATTGACGCGCCTTGCAATTT+CGG - tig0027653:28294-28313 Msa1435210:intron 45.0%
!! TGCTTGCTGTTGGGAGAATA+AGG + tig0027653:29114-29133 None:intergenic 45.0%
!! TTGTGCTAGTGCTTGCTGTT+GGG + tig0027653:29123-29142 None:intergenic 45.0%
CTAATGACGACGGATACAAC+TGG - tig0027653:29336-29355 Msa1435210:intron 45.0%
GGATACAACTGGAGGAAGTA+TGG - tig0027653:29347-29366 Msa1435210:intron 45.0%
GCAGTTACATGACCATCTAC+AGG + tig0027653:29464-29483 None:intergenic 45.0%
! TTGTCGTTTGTGAGCTTGCT+AGG + tig0027653:29527-29546 None:intergenic 45.0%
!! AGCGTGCAACAAGTTTTGTC+AGG - tig0027653:29551-29570 Msa1435210:intron 45.0%
ACAAGTGACAGTGAGGAAGA+AGG - tig0027653:29575-29594 Msa1435210:intron 45.0%
ATGAACCTGGTCTCAAGAGA+AGG - tig0027653:29621-29640 Msa1435210:intron 45.0%
CTGGTCTCAAGAGAAGGTAA+GGG - tig0027653:29627-29646 Msa1435210:intron 45.0%
AAGTGATGTGGATCTCTTGG+AGG - tig0027653:30011-30030 Msa1435210:intron 45.0%
TACGGGCAGAAAGTTGTCAA+AGG - tig0027653:30054-30073 Msa1435210:intron 45.0%
TCAAAGGCAACCCATATCCA+AGG - tig0027653:30070-30089 Msa1435210:intron 45.0%
! ATGTTCGGAAGCATGTTGAG+AGG - tig0027653:30584-30603 Msa1435210:intron 45.0%
! TGTTCGGAAGCATGTTGAGA+GGG - tig0027653:30585-30604 Msa1435210:intron 45.0%
GCATGTTGAGAGGGTTTCAA+CGG - tig0027653:30594-30613 Msa1435210:intron 45.0%
!! TGACTGTTAGTCTTAGCTGC+TGG + tig0027653:30670-30689 None:intergenic 45.0%
!! TGAGGCCAAAGTTTTGACCA+AGG - tig0027653:30912-30931 Msa1435210:five_prime_UTR 45.0%
AGCTAAGCATACCACTTGGT+GGG + tig0027653:31116-31135 None:intergenic 45.0%
AAGCTAAGCATACCACTTGG+TGG + tig0027653:31117-31136 None:intergenic 45.0%
!!! ATTTTTGTTAATAATTAAAA+AGG - tig0027653:26829-26848 Msa1435210:intron 5.0%
TTGGAGGTGGAAATGGAGAG+TGG - tig0027653:26382-26401 Msa1435210:CDS 50.0%
GAAAGCAAAGTCATGGGACC+TGG + tig0027653:26429-26448 None:intergenic 50.0%
GGAGAAGTGAACATGGCCAA+CGG + tig0027653:26570-26589 None:intergenic 50.0%
CTGAGGTGGAGAAGTGAACA+TGG + tig0027653:26577-26596 None:intergenic 50.0%
CATGTTCACTTCTCCACCTC+AGG - tig0027653:26575-26594 Msa1435210:CDS 50.0%
GAGCTTAAGGGGTCATATGG+TGG + tig0027653:26682-26701 None:intergenic 50.0%
TTGACGCGCCTTGCAATTTC+GGG + tig0027653:28295-28314 None:intergenic 50.0%
TGGAGGAAATTAACGGAGGG+GGG + tig0027653:28208-28227 None:intergenic 50.0%
CGGATGGAGGAAATTAACGG+AGG + tig0027653:26965-26984 None:intergenic 50.0%
CACTGCCACATGGTCAGAAA+AGG - tig0027653:27018-27037 Msa1435210:intron 50.0%
! GCATGCCTTTTCTGACCATG+TGG + tig0027653:28143-28162 None:intergenic 50.0%
! AAAAGGCATGCCACGTCAGA+GGG - tig0027653:27035-27054 Msa1435210:intron 50.0%
! AAAAGGCATGCCACGTCAGA+GGG + tig0027653:27035-27054 None:intergenic 50.0%
! GCATGCCTTTTCTGACCATG+TGG - tig0027653:28143-28162 Msa1435210:intron 50.0%
CACTGCCACATGGTCAGAAA+AGG + tig0027653:27018-27037 None:intergenic 50.0%
TGCCACATCAGCATGTTGGA+TGG - tig0027653:28188-28207 Msa1435210:intron 50.0%
CTCCATCCAACATGCTGATG+TGG + tig0027653:28193-28212 None:intergenic 50.0%
CACATCAGCATGTTGGATGG+AGG - tig0027653:28191-28210 Msa1435210:intron 50.0%
TGGAGGAAATTAACGGAGGG+GGG - tig0027653:28208-28227 Msa1435210:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG - tig0027653:28295-28314 Msa1435210:intron 50.0%
AATACCCCCCCGAAATTGCA+AGG + tig0027653:28306-28325 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG - tig0027653:28306-28325 Msa1435210:intron 50.0%
!! CTTGTGCTAGTGCTTGCTGT+TGG + tig0027653:29124-29143 None:intergenic 50.0%
ATGACGACGGATACAACTGG+AGG - tig0027653:29339-29358 Msa1435210:intron 50.0%
GTTGAACGCGATCCTGTAGA+TGG - tig0027653:29449-29468 Msa1435210:intron 50.0%
!! TTGTGAGCTTGCTAGGACGT+GGG + tig0027653:29520-29539 None:intergenic 50.0%
!! TTTGTGAGCTTGCTAGGACG+TGG + tig0027653:29521-29540 None:intergenic 50.0%
GTCAGGAACAAGTGACAGTG+AGG - tig0027653:29568-29587 Msa1435210:intron 50.0%
CCTTACCTTCTCTTGAGACC+AGG + tig0027653:29629-29648 None:intergenic 50.0%
CCTGGTCTCAAGAGAAGGTA+AGG - tig0027653:29626-29645 Msa1435210:intron 50.0%
GATGTGGATCTCTTGGAGGA+TGG - tig0027653:30015-30034 Msa1435210:intron 50.0%
CAACTCCGGGTTGCAATGTT+CGG - tig0027653:30569-30588 Msa1435210:intron 50.0%
TGCTTCCGAACATTGCAACC+CGG + tig0027653:30577-30596 None:intergenic 50.0%
TCAACATCAGCCTTCAGCAG+TGG - tig0027653:30762-30781 Msa1435210:CDS 50.0%
! CTTAGATGTGCCACTGCTGA+AGG + tig0027653:30775-30794 None:intergenic 50.0%
! ATACCACTTGGTGGGGAGTT+TGG + tig0027653:31108-31127 None:intergenic 50.0%
! GCTAAGCATACCACTTGGTG+GGG + tig0027653:31115-31134 None:intergenic 50.0%
! TGGTGGCATGTTTGGCTTCA+TGG - tig0027653:31172-31191 Msa1435210:five_prime_UTR 50.0%
! TGGCATGTTTGGCTTCATGG+AGG - tig0027653:31175-31194 Msa1435210:five_prime_UTR 50.0%
GGAAATGGAGAGTGGCCTTC+AGG - tig0027653:26390-26409 Msa1435210:CDS 55.0%
AATGGAGAGTGGCCTTCAGG+TGG - tig0027653:26393-26412 Msa1435210:CDS 55.0%
ATGGAGAGTGGCCTTCAGGT+GGG - tig0027653:26394-26413 Msa1435210:CDS 55.0%
GACACGTTGGATGTGGAGCA+TGG - tig0027653:26504-26523 Msa1435210:CDS 55.0%
ACGTTGGATGTGGAGCATGG+AGG - tig0027653:26507-26526 Msa1435210:CDS 55.0%
TTGGATGTGGAGCATGGAGG+AGG - tig0027653:26510-26529 Msa1435210:CDS 55.0%
TGACGCGCCTTGCAATTTCG+GGG + tig0027653:28296-28315 None:intergenic 55.0%
CACATCAGCATGTCGGATGG+AGG + tig0027653:26978-26997 None:intergenic 55.0%
CTCCATCCGACATGCTGATG+TGG - tig0027653:26976-26995 Msa1435210:intron 55.0%
TGCCACATCAGCATGTCGGA+TGG + tig0027653:26981-27000 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG - tig0027653:27034-27053 Msa1435210:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG - tig0027653:27036-27055 Msa1435210:intron 55.0%
TCAATTACCCCCCTCTGACG+TGG + tig0027653:28121-28140 None:intergenic 55.0%
!! TGGTTGGTGGCGTGTTTCTG+CGG - tig0027653:27695-27714 Msa1435210:CDS 55.0%
CTCATGCACCTAGACACTGC+AGG + tig0027653:27738-27757 None:intergenic 55.0%
TCAATTACCCCCCTCTGACG+TGG - tig0027653:28121-28140 Msa1435210:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG + tig0027653:27036-27055 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG + tig0027653:27034-27053 None:intergenic 55.0%
TGACGCGCCTTGCAATTTCG+GGG - tig0027653:28296-28315 Msa1435210:intron 55.0%
TCACCAAACTCCCCACCAAG+TGG - tig0027653:31102-31121 Msa1435210:five_prime_UTR 55.0%
TGGAGAGTGGCCTTCAGGTG+GGG - tig0027653:26395-26414 Msa1435210:CDS 60.0%
GGACTAAACCCCCCACCTGA+AGG + tig0027653:26408-26427 None:intergenic 60.0%
TCAGGTGGGGGGTTTAGTCC+AGG - tig0027653:26408-26427 Msa1435210:CDS 60.0%
TCTTTCTCGGAGCTCCTCGC+TGG - tig0027653:26480-26499 Msa1435210:CDS 60.0%
GATGTGGAGCATGGAGGAGG+AGG - tig0027653:26513-26532 Msa1435210:CDS 60.0%
!! TGGTGGTGGCTTGTCACCGT+TGG - tig0027653:26551-26570 Msa1435210:CDS 60.0%
ACGCGCCTTGCAATTTCGGG+GGG + tig0027653:28298-28317 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG + tig0027653:28297-28316 None:intergenic 60.0%
GTGGCAGTTAACTGCCCACG+TGG - tig0027653:26995-27014 Msa1435210:intron 60.0%
ACCATGTGGCAGTGCCACGT+GGG + tig0027653:28157-28176 None:intergenic 60.0%
AAGGCATGCCACGTCAGAGG+GGG - tig0027653:27037-27056 Msa1435210:intron 60.0%
TTTCTGCGGCCTGCAGTGTC+TGG - tig0027653:27709-27728 Msa1435210:CDS 60.0%
TTCTGCGGCCTGCAGTGTCT+GGG - tig0027653:27710-27729 Msa1435210:CDS 60.0%
TCTGGGTGCCTGCAGTGTCT+AGG - tig0027653:27727-27746 Msa1435210:CDS 60.0%
AAGGCATGCCACGTCAGAGG+GGG + tig0027653:27037-27056 None:intergenic 60.0%
ACCATGTGGCAGTGCCACGT+GGG - tig0027653:28157-28176 Msa1435210:intron 60.0%
GTGGCAGTTAACTGCCCACG+TGG + tig0027653:26995-27014 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG - tig0027653:28297-28316 Msa1435210:intron 60.0%
ACGCGCCTTGCAATTTCGGG+GGG - tig0027653:28298-28317 Msa1435210:intron 60.0%
GGAGAGTGGCCTTCAGGTGG+GGG - tig0027653:26396-26415 Msa1435210:CDS 65.0%
GAGAGTGGCCTTCAGGTGGG+GGG - tig0027653:26397-26416 Msa1435210:CDS 65.0%
CATCCAACGTGTCGCCAGCG+AGG + tig0027653:26497-26516 None:intergenic 65.0%
CGCTGGCGACACGTTGGATG+TGG - tig0027653:26497-26516 Msa1435210:CDS 65.0%
GTGGAGCATGGAGGAGGAGG+AGG - tig0027653:26516-26535 Msa1435210:CDS 65.0%
GAGCATGGAGGAGGAGGAGG+AGG - tig0027653:26519-26538 Msa1435210:CDS 65.0%
CATGGAGGAGGAGGAGGAGG+AGG - tig0027653:26522-26541 Msa1435210:CDS 65.0%
GGAGGAGGAGGAGGAGGAAG+AGG - tig0027653:26528-26547 Msa1435210:CDS 65.0%
GGAGGAGGAGGAGGAAGAGG+TGG - tig0027653:26531-26550 Msa1435210:CDS 65.0%
GGAGGAGGAGGAAGAGGTGG+TGG - tig0027653:26534-26553 Msa1435210:CDS 65.0%
! GGAGGAGGAAGAGGTGGTGG+TGG - tig0027653:26537-26556 Msa1435210:CDS 65.0%
GACCATGTGGCAGTGCCACG+TGG + tig0027653:28156-28175 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG - tig0027653:27038-27057 Msa1435210:intron 65.0%
TGCAGGCACCCAGACACTGC+AGG + tig0027653:27721-27740 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG + tig0027653:27038-27057 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG - tig0027653:28156-28175 Msa1435210:intron 65.0%
CGCGCCTTGCAATTTCGGGG+GGG - tig0027653:28299-28318 Msa1435210:intron 65.0%
GCTCCTCGCTGGCGACACGT+TGG - tig0027653:26491-26510 Msa1435210:CDS 70.0%
GCCCACGTGGCACTGCCACA+TGG - tig0027653:27008-27027 Msa1435210:intron 70.0%
GCCCACGTGGCACTGCCACA+TGG + tig0027653:27008-27027 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0027653 gene 25965 31232 25965 ID=Msa1435210;Name=Msa1435210
tig0027653 mRNA 25965 31232 25965 ID=Msa1435210-mRNA-1;Parent=Msa1435210;Name=Msa1435210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=413|1|1|1|1|1|4|416|385
tig0027653 exon 25965 26645 25965 ID=Msa1435210-mRNA-1:exon:9547;Parent=Msa1435210-mRNA-1
tig0027653 exon 27106 27264 27106 ID=Msa1435210-mRNA-1:exon:9546;Parent=Msa1435210-mRNA-1
tig0027653 exon 27555 28069 27555 ID=Msa1435210-mRNA-1:exon:9545;Parent=Msa1435210-mRNA-1
tig0027653 exon 30601 31232 30601 ID=Msa1435210-mRNA-1:exon:9544;Parent=Msa1435210-mRNA-1
tig0027653 five_prime_UTR 30820 31232 30820 ID=Msa1435210-mRNA-1:five_prime_utr;Parent=Msa1435210-mRNA-1
tig0027653 CDS 30601 30819 30601 ID=Msa1435210-mRNA-1:cds;Parent=Msa1435210-mRNA-1
tig0027653 CDS 27555 28069 27555 ID=Msa1435210-mRNA-1:cds;Parent=Msa1435210-mRNA-1
tig0027653 CDS 27106 27264 27106 ID=Msa1435210-mRNA-1:cds;Parent=Msa1435210-mRNA-1
tig0027653 CDS 26381 26645 26381 ID=Msa1435210-mRNA-1:cds;Parent=Msa1435210-mRNA-1
tig0027653 three_prime_UTR 25965 26380 25965 ID=Msa1435210-mRNA-1:three_prime_utr;Parent=Msa1435210-mRNA-1
Gene Sequence

>Msa1435210

ATGGTTGGAGGTGGAAATGGAGAGTGGCCTTCAGGTGGGGGGTTTAGTCCAGGTCCCATGACTTTGCTTTCCAACTTGTTTGGTGACAACGATGACTGCAAGTCTTTCTCGGAGCTCCTCGCTGGCGACACGTTGGATGTGGAGCATGGAGGAGGAGGAGGAGGAGGAAGAGGTGGTGGTGGCTTGTCACCGTTGGCCATGTTCACTTCTCCACCTCAGCAAGCACTAGCACAAGCCTACTCAAATGCTCAAATCCAATCTGAACATCCATTTTCTGCATCATCAGTACCCAACAGTACCTCATTGACACAAGTTCCATCAATAACATTCAATAACATTGCACAACAACTGATACCAAACTCTGTTGAGTATTCTTCTAACTCAGAACAAAGACTACAGAAGTCTTCTTCTGTGAATGTTGATAAGGCTAATGACGACGGATACAACTGGAGGAAGTATGGACAGAAACAAGTGAAAGGTTGCGAGTTTCCTCGAAGTTATTACAAGTGCACACATCCAAGCTGTCTTGTGACGAAAAAAGTTGAACGCGATCCTGTAGATGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACATTCATCAACGCCCACGTCCTAGCAAGCTCACAAACGACAATTCAAGCGTGCAACAAGTTTTGTCAGGAACAAGTGACAGTGAGGAAGAAGGAGATCATGAAACTGAAGTAGATTATGAACCTGGTCTCAAGAGAAGAAAAACAGAAGCCAAACTCCTGAATCCATCCCTTTCACATAGGACTGTCTCAAAGCCTAAAATCATTGTGCAAACAACAAGTGATGTGGATCTCTTGGAGGATGGATATAGATGGCGCAAATACGGGCAGAAAGTTGTCAAAGGCAACCCATATCCAAGGAGCTATTACAAATGCACAACTCCGGGTTGCAATGTTCGGAAGCATGTTGAGAGGGTTTCAACGGATCCTAAAGCTGTATTGACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAACAGTCATAACCTTGCTAGCAATAATAGTGCATCACTGCTAAAATCACAAAATGAGATGCAGAATTTCAACAGAAGGGGTCAACATCAGCCTTCAGCAGTGGCACATCTAAGATTGAAGGAAGAGCATATATAA
Protein sequence

>Msa1435210

MVGGGNGEWPSGGGFSPGPMTLLSNLFGDNDDCKSFSELLAGDTLDVEHGGGGGGGRGGGGLSPLAMFTSPPQQALAQAYSNAQIQSEHPFSASSVPNSTSLTQVPSITFNNIAQQLIPNSVEYSSNSEQRLQKSSSVNVDKANDDGYNWRKYGQKQVKGCEFPRSYYKCTHPSCLVTKKVERDPVDGHVTAIIYKGEHIHQRPRPSKLTNDNSSVQQVLSGTSDSEEEGDHETEVDYEPGLKRRKTEAKLLNPSLSHRTVSKPKIIVQTTSDVDLLEDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERVSTDPKAVLTTYEGKHNHDVPAAKTNSHNLASNNSASLLKSQNEMQNFNRRGQHQPSAVAHLRLKEEHI*