Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108900 | XP_027188768.1 | 64.414 | 222 | 58 | 6 | 1 | 205 | 790 | 1007 | 2.72e-80 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108900 | A0A3Q7XNU8 | 64.414 | 222 | 58 | 6 | 1 | 205 | 790 | 1007 | 1.30e-80 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1024910 | Msa1108900 | 0.866069 | 3.731211e-65 | -8.615850e-47 |
| Msa1063640 | Msa1108900 | 0.941338 | 4.950638e-101 | -8.615850e-47 |
| Msa1108900 | Msa1152680 | 0.909025 | 8.976964e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1108900 | MtrunA17_Chr5g0394041 | 55.446 | 202 | 74 | 5 | 1 | 186 | 497 | 698 | 1.60e-64 | 212 |
| Msa1108900 | MtrunA17_Chr7g0243031 | 55.208 | 192 | 69 | 5 | 1 | 182 | 399 | 583 | 2.83e-60 | 199 |
| Msa1108900 | MtrunA17_Chr7g0242741 | 52.020 | 198 | 71 | 3 | 1 | 177 | 151 | 345 | 1.01e-58 | 190 |
| Msa1108900 | MtrunA17_Chr7g0242791 | 54.696 | 181 | 57 | 4 | 27 | 182 | 3 | 183 | 2.44e-58 | 184 |
| Msa1108900 | MtrunA17_Chr7g0242811 | 53.889 | 180 | 78 | 4 | 1 | 176 | 888 | 1066 | 1.41e-53 | 184 |
| Msa1108900 | MtrunA17_Chr7g0242801 | 49.754 | 203 | 80 | 3 | 1 | 181 | 963 | 1165 | 4.89e-52 | 179 |
| Msa1108900 | MtrunA17_Chr2g0319851 | 50.521 | 192 | 78 | 4 | 1 | 176 | 920 | 1110 | 4.23e-51 | 177 |
| Msa1108900 | MtrunA17_Chr2g0319811 | 50.610 | 164 | 71 | 3 | 1 | 156 | 9 | 170 | 3.56e-49 | 157 |
| Msa1108900 | MtrunA17_Chr2g0319821 | 48.108 | 185 | 84 | 5 | 1 | 181 | 939 | 1115 | 3.34e-46 | 162 |
| Msa1108900 | MtrunA17_Chr2g0319921 | 46.809 | 188 | 89 | 5 | 1 | 181 | 912 | 1095 | 8.93e-46 | 161 |
| Msa1108900 | MtrunA17_Chr2g0319841 | 48.045 | 179 | 75 | 4 | 31 | 195 | 4 | 178 | 3.28e-44 | 147 |
| Msa1108900 | MtrunA17_Chr2g0319831 | 48.052 | 154 | 63 | 5 | 28 | 178 | 23 | 162 | 2.14e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGCGCCACTTAATT+TGG | 0.151359 | 7_3:+52176329 | Msa1108900:CDS |
| ACTTAATTTGGAACGGAATA+TGG | 0.188565 | 7_3:+52176341 | Msa1108900:CDS |
| TGTTGAGAACTTGCAGAATT+TGG | 0.210118 | 7_3:-52176246 | None:intergenic |
| TTGATGGCAGAAAATATATT+TGG | 0.242328 | 7_3:+52176364 | Msa1108900:CDS |
| TTGAAGATATGGAGAGAATT+TGG | 0.255048 | 7_3:-52175501 | None:intergenic |
| TGACGCATCAATGTCTTTCT+TGG | 0.272218 | 7_3:-52176496 | None:intergenic |
| TCTGAGGAATGATGATAAAA+AGG | 0.283542 | 7_3:-52176099 | None:intergenic |
| GGAGAGAATTTGGCCAAATT+AGG | 0.308211 | 7_3:-52175491 | None:intergenic |
| CTCCATATCTTCAATATAGA+TGG | 0.355510 | 7_3:+52175510 | Msa1108900:CDS |
| TGGCCCGAATACCAATATAA+AGG | 0.374902 | 7_3:+52176132 | Msa1108900:CDS |
| AAAGAAAGATAGAAAGGATA+TGG | 0.381720 | 7_3:-52176282 | None:intergenic |
| AGCCATCTATATTGAAGATA+TGG | 0.385788 | 7_3:-52175512 | None:intergenic |
| GGCCCGAATACCAATATAAA+GGG | 0.393070 | 7_3:+52176133 | Msa1108900:CDS |
| TTGGAACGGAATATGGTTGA+TGG | 0.424841 | 7_3:+52176348 | Msa1108900:CDS |
| ACTTTGATATGCATGTTGAT+TGG | 0.429591 | 7_3:+52176178 | Msa1108900:CDS |
| AAAGGATATGGCAGTGGAAA+AGG | 0.436584 | 7_3:-52176270 | None:intergenic |
| GGTACAGTTACAAGAGGAAC+AGG | 0.445170 | 7_3:+52176549 | Msa1108900:CDS |
| CTTTGATATGCATGTTGATT+GGG | 0.446626 | 7_3:+52176179 | Msa1108900:CDS |
| AACTTGCAGAATTTGGCATT+GGG | 0.461396 | 7_3:-52176239 | None:intergenic |
| CTTTCAAAAGAAAGATAGAA+AGG | 0.468364 | 7_3:-52176288 | None:intergenic |
| ATATTCCGTTCCAAATTAAG+TGG | 0.474436 | 7_3:-52176339 | None:intergenic |
| AAGACATTGATGCGTCAGAC+TGG | 0.484830 | 7_3:+52176502 | Msa1108900:CDS |
| GGAGTAAGCTATTGCTAAAG+AGG | 0.486591 | 7_3:+52176523 | Msa1108900:CDS |
| GAACTTGCAGAATTTGGCAT+TGG | 0.487999 | 7_3:-52176240 | None:intergenic |
| TCTTATAATCAAACCTTGGT+AGG | 0.508204 | 7_3:-52176451 | None:intergenic |
| AGATAGAAAGGATATGGCAG+TGG | 0.522745 | 7_3:-52176276 | None:intergenic |
| AGGTTTGATTATAAGAGAGT+GGG | 0.536441 | 7_3:+52176458 | Msa1108900:CDS |
| AAGGTTTGATTATAAGAGAG+TGG | 0.541445 | 7_3:+52176457 | Msa1108900:CDS |
| AGGAACAGGATTACAAATTG+AGG | 0.558506 | 7_3:+52176563 | Msa1108900:CDS |
| ATGCGCCACTTAATTTGGAA+CGG | 0.571402 | 7_3:+52176334 | Msa1108900:CDS |
| ACTCTCTTATAATCAAACCT+TGG | 0.593748 | 7_3:-52176455 | None:intergenic |
| AAGCTATTGCTAAAGAGGAA+AGG | 0.607189 | 7_3:+52176528 | Msa1108900:CDS |
| AGGAAAGGTACAGTTACAAG+AGG | 0.610459 | 7_3:+52176543 | Msa1108900:CDS |
| ATCGCATTTAAAGCCTACCA+AGG | 0.614912 | 7_3:+52176438 | Msa1108900:CDS |
| GGTTTGATTATAAGAGAGTG+GGG | 0.617044 | 7_3:+52176459 | Msa1108900:CDS |
| GTTTGATTATAAGAGAGTGG+GGG | 0.619112 | 7_3:+52176460 | Msa1108900:CDS |
| GATATGCATGTTGATTGGGT+CGG | 0.625717 | 7_3:+52176183 | Msa1108900:CDS |
| TATTGGTATTCGGGCCACGT+TGG | 0.630025 | 7_3:-52176126 | None:intergenic |
| GCCCGAATACCAATATAAAG+GGG | 0.639867 | 7_3:+52176134 | Msa1108900:CDS |
| GGGCCACGTTGGAATGTCTG+AGG | 0.645948 | 7_3:-52176115 | None:intergenic |
| CCCGAATACCAATATAAAGG+GGG | 0.685847 | 7_3:+52176135 | Msa1108900:CDS |
| AAGCCGCACCGAAAATGACG+AGG | 0.709482 | 7_3:-52176063 | None:intergenic |
| ATTCCTCAGACATTCCAACG+TGG | 0.797381 | 7_3:+52176112 | Msa1108900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGATCAGTTGAATAAA+GGG | - | chr7_3:52175890-52175909 | None:intergenic | 20.0% |
| !! | TATTATGATCAGTTGAATAA+AGG | - | chr7_3:52175891-52175910 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | + | chr7_3:52176032-52176051 | Msa1108900:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | + | chr7_3:52176290-52176309 | Msa1108900:CDS | 20.0% |
| !! | ATTATGATCAGTTGAATAAA+GGG | - | chr7_3:52175890-52175909 | None:intergenic | 20.0% |
| !! | TATTATGATCAGTTGAATAA+AGG | - | chr7_3:52175891-52175910 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | + | chr7_3:52176032-52176051 | Msa1108900:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | + | chr7_3:52176290-52176309 | Msa1108900:CDS | 20.0% |
| !!! | GGTATATATTTTGAAGTTCA+AGG | - | chr7_3:52175733-52175752 | None:intergenic | 25.0% |
| !! | TGCATCGGATTTAAATATTT+TGG | - | chr7_3:52175782-52175801 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | - | chr7_3:52175889-52175908 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | + | chr7_3:52176038-52176057 | Msa1108900:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | - | chr7_3:52176285-52176304 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | - | chr7_3:52176291-52176310 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | + | chr7_3:52176289-52176308 | Msa1108900:CDS | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | + | chr7_3:52176364-52176383 | Msa1108900:CDS | 25.0% |
| !!! | GGTATATATTTTGAAGTTCA+AGG | - | chr7_3:52175733-52175752 | None:intergenic | 25.0% |
| !! | TGCATCGGATTTAAATATTT+TGG | - | chr7_3:52175782-52175801 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | - | chr7_3:52175889-52175908 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | + | chr7_3:52176038-52176057 | Msa1108900:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | - | chr7_3:52176285-52176304 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | - | chr7_3:52176291-52176310 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | + | chr7_3:52176289-52176308 | Msa1108900:CDS | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | + | chr7_3:52176364-52176383 | Msa1108900:CDS | 25.0% |
| ! | TGTTTTCGACTATCCTAATT+TGG | + | chr7_3:52175478-52175497 | Msa1108900:CDS | 30.0% |
| TTGAAGATATGGAGAGAATT+TGG | - | chr7_3:52175504-52175523 | None:intergenic | 30.0% | |
| CTCCATATCTTCAATATAGA+TGG | + | chr7_3:52175510-52175529 | Msa1108900:CDS | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | - | chr7_3:52175515-52175534 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | + | chr7_3:52175529-52175548 | Msa1108900:CDS | 30.0% |
| AAGTAGACAAACAAACTAAG+TGG | - | chr7_3:52175587-52175606 | None:intergenic | 30.0% | |
| TCCTATTATATGAGTTCCAT+TGG | + | chr7_3:52175610-52175629 | Msa1108900:intron | 30.0% | |
| ACCAATGGAACTCATATAAT+AGG | - | chr7_3:52175614-52175633 | None:intergenic | 30.0% | |
| AAGTTCAAGGAACATTATGT+GGG | - | chr7_3:52175720-52175739 | None:intergenic | 30.0% | |
| ATATATACCTTGTACTGTCA+AGG | + | chr7_3:52175744-52175763 | Msa1108900:intron | 30.0% | |
| TATATACCTTGTACTGTCAA+GGG | + | chr7_3:52175745-52175764 | Msa1108900:intron | 30.0% | |
| AAATCGTGACATGATTATCA+AGG | - | chr7_3:52175849-52175868 | None:intergenic | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | - | chr7_3:52176102-52176121 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | - | chr7_3:52176146-52176165 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | + | chr7_3:52176148-52176167 | Msa1108900:CDS | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | + | chr7_3:52176178-52176197 | Msa1108900:CDS | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | + | chr7_3:52176179-52176198 | Msa1108900:CDS | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | - | chr7_3:52176342-52176361 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | + | chr7_3:52176341-52176360 | Msa1108900:CDS | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | - | chr7_3:52176454-52176473 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | - | chr7_3:52176458-52176477 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | + | chr7_3:52176457-52176476 | Msa1108900:CDS | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | + | chr7_3:52176458-52176477 | Msa1108900:CDS | 30.0% | |
| ! | TGTTTTCGACTATCCTAATT+TGG | + | chr7_3:52175478-52175497 | Msa1108900:CDS | 30.0% |
| TTGAAGATATGGAGAGAATT+TGG | - | chr7_3:52175504-52175523 | None:intergenic | 30.0% | |
| CTCCATATCTTCAATATAGA+TGG | + | chr7_3:52175510-52175529 | Msa1108900:CDS | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | - | chr7_3:52175515-52175534 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | + | chr7_3:52175529-52175548 | Msa1108900:CDS | 30.0% |
| AAGTAGACAAACAAACTAAG+TGG | - | chr7_3:52175587-52175606 | None:intergenic | 30.0% | |
| TCCTATTATATGAGTTCCAT+TGG | + | chr7_3:52175610-52175629 | Msa1108900:intron | 30.0% | |
| ACCAATGGAACTCATATAAT+AGG | - | chr7_3:52175614-52175633 | None:intergenic | 30.0% | |
| AAGTTCAAGGAACATTATGT+GGG | - | chr7_3:52175720-52175739 | None:intergenic | 30.0% | |
| ATATATACCTTGTACTGTCA+AGG | + | chr7_3:52175744-52175763 | Msa1108900:intron | 30.0% | |
| TATATACCTTGTACTGTCAA+GGG | + | chr7_3:52175745-52175764 | Msa1108900:intron | 30.0% | |
| AAATCGTGACATGATTATCA+AGG | - | chr7_3:52175849-52175868 | None:intergenic | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | - | chr7_3:52176102-52176121 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | - | chr7_3:52176146-52176165 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | + | chr7_3:52176148-52176167 | Msa1108900:CDS | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | + | chr7_3:52176178-52176197 | Msa1108900:CDS | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | + | chr7_3:52176179-52176198 | Msa1108900:CDS | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | - | chr7_3:52176342-52176361 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | + | chr7_3:52176341-52176360 | Msa1108900:CDS | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | - | chr7_3:52176454-52176473 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | - | chr7_3:52176458-52176477 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | + | chr7_3:52176457-52176476 | Msa1108900:CDS | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | + | chr7_3:52176458-52176477 | Msa1108900:CDS | 30.0% | |
| AAACTAAGTGGAGAGAAAGA+GGG | - | chr7_3:52175575-52175594 | None:intergenic | 35.0% | |
| ! | TGAGTTCCATTGGTTAGTAA+AGG | + | chr7_3:52175620-52175639 | Msa1108900:intron | 35.0% |
| GAAGTTCAAGGAACATTATG+TGG | - | chr7_3:52175721-52175740 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | - | chr7_3:52176139-52176158 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | + | chr7_3:52176209-52176228 | Msa1108900:CDS | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | - | chr7_3:52176242-52176261 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | - | chr7_3:52176249-52176268 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | + | chr7_3:52176329-52176348 | Msa1108900:CDS | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | - | chr7_3:52176416-52176435 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | + | chr7_3:52176459-52176478 | Msa1108900:CDS | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | + | chr7_3:52176460-52176479 | Msa1108900:CDS | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | + | chr7_3:52176528-52176547 | Msa1108900:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | + | chr7_3:52176563-52176582 | Msa1108900:CDS | 35.0% | |
| AAACTAAGTGGAGAGAAAGA+GGG | - | chr7_3:52175575-52175594 | None:intergenic | 35.0% | |
| ! | TGAGTTCCATTGGTTAGTAA+AGG | + | chr7_3:52175620-52175639 | Msa1108900:intron | 35.0% |
| GAAGTTCAAGGAACATTATG+TGG | - | chr7_3:52175721-52175740 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | - | chr7_3:52176139-52176158 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | + | chr7_3:52176209-52176228 | Msa1108900:CDS | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | - | chr7_3:52176242-52176261 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | - | chr7_3:52176249-52176268 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | + | chr7_3:52176329-52176348 | Msa1108900:CDS | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | - | chr7_3:52176416-52176435 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | + | chr7_3:52176459-52176478 | Msa1108900:CDS | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | + | chr7_3:52176460-52176479 | Msa1108900:CDS | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | + | chr7_3:52176528-52176547 | Msa1108900:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | + | chr7_3:52176563-52176582 | Msa1108900:CDS | 35.0% | |
| GGAGAGAATTTGGCCAAATT+AGG | - | chr7_3:52175494-52175513 | None:intergenic | 40.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | - | chr7_3:52175566-52175585 | None:intergenic | 40.0% | |
| CAAACTAAGTGGAGAGAAAG+AGG | - | chr7_3:52175576-52175595 | None:intergenic | 40.0% | |
| ! | GTTCCATTGGTTAGTAAAGG+CGG | + | chr7_3:52175623-52175642 | Msa1108900:intron | 40.0% |
| ATGTGAGAGATTCACACTTG+AGG | + | chr7_3:52175659-52175678 | Msa1108900:intron | 40.0% | |
| TGTGAGAGATTCACACTTGA+GGG | + | chr7_3:52175660-52175679 | Msa1108900:intron | 40.0% | |
| ACACTTGAGGGGATGATTAA+TGG | + | chr7_3:52175672-52175691 | Msa1108900:intron | 40.0% | |
| ! | AATGAAGCACTCTCATGCAT+CGG | - | chr7_3:52175797-52175816 | None:intergenic | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | + | chr7_3:52176055-52176074 | Msa1108900:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | + | chr7_3:52176132-52176151 | Msa1108900:CDS | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | + | chr7_3:52176133-52176152 | Msa1108900:CDS | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | + | chr7_3:52176134-52176153 | Msa1108900:CDS | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | - | chr7_3:52176138-52176157 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | + | chr7_3:52176135-52176154 | Msa1108900:CDS | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | + | chr7_3:52176183-52176202 | Msa1108900:CDS | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | + | chr7_3:52176197-52176216 | Msa1108900:CDS | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | - | chr7_3:52176243-52176262 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | - | chr7_3:52176273-52176292 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | - | chr7_3:52176279-52176298 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | + | chr7_3:52176334-52176353 | Msa1108900:CDS | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | + | chr7_3:52176348-52176367 | Msa1108900:CDS | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | + | chr7_3:52176438-52176457 | Msa1108900:CDS | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | - | chr7_3:52176499-52176518 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | + | chr7_3:52176523-52176542 | Msa1108900:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | + | chr7_3:52176543-52176562 | Msa1108900:CDS | 40.0% |
| GGAGAGAATTTGGCCAAATT+AGG | - | chr7_3:52175494-52175513 | None:intergenic | 40.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | - | chr7_3:52175566-52175585 | None:intergenic | 40.0% | |
| CAAACTAAGTGGAGAGAAAG+AGG | - | chr7_3:52175576-52175595 | None:intergenic | 40.0% | |
| ! | GTTCCATTGGTTAGTAAAGG+CGG | + | chr7_3:52175623-52175642 | Msa1108900:intron | 40.0% |
| ATGTGAGAGATTCACACTTG+AGG | + | chr7_3:52175659-52175678 | Msa1108900:intron | 40.0% | |
| TGTGAGAGATTCACACTTGA+GGG | + | chr7_3:52175660-52175679 | Msa1108900:intron | 40.0% | |
| ACACTTGAGGGGATGATTAA+TGG | + | chr7_3:52175672-52175691 | Msa1108900:intron | 40.0% | |
| ! | AATGAAGCACTCTCATGCAT+CGG | - | chr7_3:52175797-52175816 | None:intergenic | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | + | chr7_3:52176055-52176074 | Msa1108900:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | + | chr7_3:52176132-52176151 | Msa1108900:CDS | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | + | chr7_3:52176133-52176152 | Msa1108900:CDS | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | + | chr7_3:52176134-52176153 | Msa1108900:CDS | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | - | chr7_3:52176138-52176157 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | + | chr7_3:52176135-52176154 | Msa1108900:CDS | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | + | chr7_3:52176183-52176202 | Msa1108900:CDS | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | + | chr7_3:52176197-52176216 | Msa1108900:CDS | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | - | chr7_3:52176243-52176262 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | - | chr7_3:52176273-52176292 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | - | chr7_3:52176279-52176298 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | + | chr7_3:52176334-52176353 | Msa1108900:CDS | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | + | chr7_3:52176348-52176367 | Msa1108900:CDS | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | + | chr7_3:52176438-52176457 | Msa1108900:CDS | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | - | chr7_3:52176499-52176518 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | + | chr7_3:52176523-52176542 | Msa1108900:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | + | chr7_3:52176543-52176562 | Msa1108900:CDS | 40.0% |
| GTGAGAGATTCACACTTGAG+GGG | + | chr7_3:52175661-52175680 | Msa1108900:intron | 45.0% | |
| TTCAGTCCCTTGACAGTACA+AGG | - | chr7_3:52175754-52175773 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | + | chr7_3:52176112-52176131 | Msa1108900:CDS | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | + | chr7_3:52176502-52176521 | Msa1108900:CDS | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | + | chr7_3:52176549-52176568 | Msa1108900:CDS | 45.0% | |
| GTGAGAGATTCACACTTGAG+GGG | + | chr7_3:52175661-52175680 | Msa1108900:intron | 45.0% | |
| TTCAGTCCCTTGACAGTACA+AGG | - | chr7_3:52175754-52175773 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | + | chr7_3:52176112-52176131 | Msa1108900:CDS | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | + | chr7_3:52176502-52176521 | Msa1108900:CDS | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | + | chr7_3:52176549-52176568 | Msa1108900:CDS | 45.0% | |
| GCACCGCCTTTACTAACCAA+TGG | - | chr7_3:52175629-52175648 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | + | chr7_3:52176060-52176079 | Msa1108900:CDS | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | - | chr7_3:52176129-52176148 | None:intergenic | 50.0% | |
| GCACCGCCTTTACTAACCAA+TGG | - | chr7_3:52175629-52175648 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | + | chr7_3:52176060-52176079 | Msa1108900:CDS | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | - | chr7_3:52176129-52176148 | None:intergenic | 50.0% | |
| AAGCCGCACCGAAAATGACG+AGG | - | chr7_3:52176066-52176085 | None:intergenic | 55.0% | |
| AAGCCGCACCGAAAATGACG+AGG | - | chr7_3:52176066-52176085 | None:intergenic | 55.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | - | chr7_3:52176118-52176137 | None:intergenic | 60.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | - | chr7_3:52176118-52176137 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 52175467 | 52176593 | 52175467 | ID=Msa1108900;Name=Msa1108900 |
| chr7_3 | mRNA | 52175467 | 52176593 | 52175467 | ID=Msa1108900-mRNA-1;Parent=Msa1108900;Name=Msa1108900-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|0|2|0|206 |
| chr7_3 | exon | 52175467 | 52175550 | 52175467 | ID=Msa1108900-mRNA-1:exon:10835;Parent=Msa1108900-mRNA-1 |
| chr7_3 | exon | 52176060 | 52176593 | 52176060 | ID=Msa1108900-mRNA-1:exon:10836;Parent=Msa1108900-mRNA-1 |
| chr7_3 | CDS | 52175467 | 52175550 | 52175467 | ID=Msa1108900-mRNA-1:cds;Parent=Msa1108900-mRNA-1 |
| chr7_3 | CDS | 52176060 | 52176593 | 52176060 | ID=Msa1108900-mRNA-1:cds;Parent=Msa1108900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
