Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152680 | XP_027188768.1 | 64.414 | 222 | 58 | 6 | 1 | 205 | 790 | 1007 | 2.72e-80 | 269 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152680 | A0A3Q7XNU8 | 64.414 | 222 | 58 | 6 | 1 | 205 | 790 | 1007 | 1.30e-80 | 269 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1024910 | Msa1152680 | 0.812140 | 4.925754e-51 | -8.615850e-47 |
| Msa1063640 | Msa1152680 | 0.872332 | 3.448984e-67 | -8.615850e-47 |
| Msa1108900 | Msa1152680 | 0.909025 | 8.976964e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1152680 | MtrunA17_Chr5g0394041 | 55.446 | 202 | 74 | 5 | 1 | 186 | 497 | 698 | 1.60e-64 | 212 |
| Msa1152680 | MtrunA17_Chr7g0243031 | 55.208 | 192 | 69 | 5 | 1 | 182 | 399 | 583 | 2.83e-60 | 199 |
| Msa1152680 | MtrunA17_Chr7g0242741 | 52.020 | 198 | 71 | 3 | 1 | 177 | 151 | 345 | 1.01e-58 | 190 |
| Msa1152680 | MtrunA17_Chr7g0242791 | 54.696 | 181 | 57 | 4 | 27 | 182 | 3 | 183 | 2.44e-58 | 184 |
| Msa1152680 | MtrunA17_Chr7g0242811 | 53.889 | 180 | 78 | 4 | 1 | 176 | 888 | 1066 | 1.41e-53 | 184 |
| Msa1152680 | MtrunA17_Chr7g0242801 | 49.754 | 203 | 80 | 3 | 1 | 181 | 963 | 1165 | 4.89e-52 | 179 |
| Msa1152680 | MtrunA17_Chr2g0319851 | 50.521 | 192 | 78 | 4 | 1 | 176 | 920 | 1110 | 4.23e-51 | 177 |
| Msa1152680 | MtrunA17_Chr2g0319811 | 50.610 | 164 | 71 | 3 | 1 | 156 | 9 | 170 | 3.56e-49 | 157 |
| Msa1152680 | MtrunA17_Chr2g0319821 | 48.108 | 185 | 84 | 5 | 1 | 181 | 939 | 1115 | 3.34e-46 | 162 |
| Msa1152680 | MtrunA17_Chr2g0319921 | 46.809 | 188 | 89 | 5 | 1 | 181 | 912 | 1095 | 8.93e-46 | 161 |
| Msa1152680 | MtrunA17_Chr2g0319841 | 48.045 | 179 | 75 | 4 | 31 | 195 | 4 | 178 | 3.28e-44 | 147 |
| Msa1152680 | MtrunA17_Chr2g0319831 | 48.052 | 154 | 63 | 5 | 28 | 178 | 23 | 162 | 2.14e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGCGCCACTTAATT+TGG | 0.151359 | 7_4:-38454841 | Msa1152680:CDS |
| ACTTAATTTGGAACGGAATA+TGG | 0.188565 | 7_4:-38454829 | Msa1152680:CDS |
| TGTTGAGAACTTGCAGAATT+TGG | 0.210118 | 7_4:+38454924 | None:intergenic |
| TTGATGGCAGAAAATATATT+TGG | 0.242328 | 7_4:-38454806 | Msa1152680:CDS |
| TTGAAGATATGGAGAGAATT+TGG | 0.255048 | 7_4:+38455669 | None:intergenic |
| TGACGCATCAATGTCTTTCT+TGG | 0.272218 | 7_4:+38454674 | None:intergenic |
| TCTGAGGAATGATGATAAAA+AGG | 0.283542 | 7_4:+38455071 | None:intergenic |
| GGAGAGAATTTGGCCAAATT+AGG | 0.308211 | 7_4:+38455679 | None:intergenic |
| CTCCATATCTTCAATATAGA+TGG | 0.355510 | 7_4:-38455660 | Msa1152680:CDS |
| TGGCCCGAATACCAATATAA+AGG | 0.374902 | 7_4:-38455038 | Msa1152680:CDS |
| AAAGAAAGATAGAAAGGATA+TGG | 0.381720 | 7_4:+38454888 | None:intergenic |
| AGCCATCTATATTGAAGATA+TGG | 0.385788 | 7_4:+38455658 | None:intergenic |
| GGCCCGAATACCAATATAAA+GGG | 0.393070 | 7_4:-38455037 | Msa1152680:CDS |
| TTGGAACGGAATATGGTTGA+TGG | 0.424841 | 7_4:-38454822 | Msa1152680:CDS |
| ACTTTGATATGCATGTTGAT+TGG | 0.429591 | 7_4:-38454992 | Msa1152680:CDS |
| AAAGGATATGGCAGTGGAAA+AGG | 0.436584 | 7_4:+38454900 | None:intergenic |
| GGTACAGTTACAAGAGGAAC+AGG | 0.445170 | 7_4:-38454621 | Msa1152680:CDS |
| CTTTGATATGCATGTTGATT+GGG | 0.446626 | 7_4:-38454991 | Msa1152680:CDS |
| AACTTGCAGAATTTGGCATT+GGG | 0.461396 | 7_4:+38454931 | None:intergenic |
| CTTTCAAAAGAAAGATAGAA+AGG | 0.468364 | 7_4:+38454882 | None:intergenic |
| ATATTCCGTTCCAAATTAAG+TGG | 0.474436 | 7_4:+38454831 | None:intergenic |
| AAGACATTGATGCGTCAGAC+TGG | 0.484830 | 7_4:-38454668 | Msa1152680:CDS |
| GGAGTAAGCTATTGCTAAAG+AGG | 0.486591 | 7_4:-38454647 | Msa1152680:CDS |
| GAACTTGCAGAATTTGGCAT+TGG | 0.487999 | 7_4:+38454930 | None:intergenic |
| TCTTATAATCAAACCTTGGT+AGG | 0.508204 | 7_4:+38454719 | None:intergenic |
| AGATAGAAAGGATATGGCAG+TGG | 0.522745 | 7_4:+38454894 | None:intergenic |
| AGGTTTGATTATAAGAGAGT+GGG | 0.536441 | 7_4:-38454712 | Msa1152680:CDS |
| AAGGTTTGATTATAAGAGAG+TGG | 0.541445 | 7_4:-38454713 | Msa1152680:CDS |
| AGGAACAGGATTACAAATTG+AGG | 0.558506 | 7_4:-38454607 | Msa1152680:CDS |
| ATGCGCCACTTAATTTGGAA+CGG | 0.571402 | 7_4:-38454836 | Msa1152680:CDS |
| ACTCTCTTATAATCAAACCT+TGG | 0.593748 | 7_4:+38454715 | None:intergenic |
| AAGCTATTGCTAAAGAGGAA+AGG | 0.607189 | 7_4:-38454642 | Msa1152680:CDS |
| AGGAAAGGTACAGTTACAAG+AGG | 0.610459 | 7_4:-38454627 | Msa1152680:CDS |
| ATCGCATTTAAAGCCTACCA+AGG | 0.614912 | 7_4:-38454732 | Msa1152680:CDS |
| GGTTTGATTATAAGAGAGTG+GGG | 0.617044 | 7_4:-38454711 | Msa1152680:CDS |
| GTTTGATTATAAGAGAGTGG+GGG | 0.619112 | 7_4:-38454710 | Msa1152680:CDS |
| GATATGCATGTTGATTGGGT+CGG | 0.625717 | 7_4:-38454987 | Msa1152680:CDS |
| TATTGGTATTCGGGCCACGT+TGG | 0.630025 | 7_4:+38455044 | None:intergenic |
| GCCCGAATACCAATATAAAG+GGG | 0.639867 | 7_4:-38455036 | Msa1152680:CDS |
| GGGCCACGTTGGAATGTCTG+AGG | 0.645948 | 7_4:+38455055 | None:intergenic |
| CCCGAATACCAATATAAAGG+GGG | 0.685847 | 7_4:-38455035 | Msa1152680:CDS |
| AAGCCGCACCGAAAATGACG+AGG | 0.709482 | 7_4:+38455107 | None:intergenic |
| ATTCCTCAGACATTCCAACG+TGG | 0.797381 | 7_4:-38455058 | Msa1152680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGATCAGTTGAATAAA+GGG | + | chr7_4:38455022-38455041 | None:intergenic | 20.0% |
| !! | TATTATGATCAGTTGAATAA+AGG | + | chr7_4:38455023-38455042 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | - | chr7_4:38455164-38455183 | Msa1152680:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | - | chr7_4:38455422-38455441 | Msa1152680:intron | 20.0% |
| !! | ATTATGATCAGTTGAATAAA+GGG | + | chr7_4:38455022-38455041 | None:intergenic | 20.0% |
| !! | TATTATGATCAGTTGAATAA+AGG | + | chr7_4:38455023-38455042 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | - | chr7_4:38455164-38455183 | Msa1152680:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | - | chr7_4:38455422-38455441 | Msa1152680:intron | 20.0% |
| !!! | GGTATATATTTTGAAGTTCA+AGG | + | chr7_4:38454865-38454884 | None:intergenic | 25.0% |
| !! | TGCATCGGATTTAAATATTT+TGG | + | chr7_4:38454914-38454933 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | + | chr7_4:38455021-38455040 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | - | chr7_4:38455170-38455189 | Msa1152680:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | + | chr7_4:38455417-38455436 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | + | chr7_4:38455423-38455442 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | - | chr7_4:38455421-38455440 | Msa1152680:intron | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | - | chr7_4:38455496-38455515 | Msa1152680:intron | 25.0% |
| !!! | GGTATATATTTTGAAGTTCA+AGG | + | chr7_4:38454865-38454884 | None:intergenic | 25.0% |
| !! | TGCATCGGATTTAAATATTT+TGG | + | chr7_4:38454914-38454933 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | + | chr7_4:38455021-38455040 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | - | chr7_4:38455170-38455189 | Msa1152680:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | + | chr7_4:38455417-38455436 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | + | chr7_4:38455423-38455442 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | - | chr7_4:38455421-38455440 | Msa1152680:intron | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | - | chr7_4:38455496-38455515 | Msa1152680:intron | 25.0% |
| ! | TGTTTTCGACTATCCTAATT+TGG | - | chr7_4:38454610-38454629 | Msa1152680:CDS | 30.0% |
| TTGAAGATATGGAGAGAATT+TGG | + | chr7_4:38454636-38454655 | None:intergenic | 30.0% | |
| CTCCATATCTTCAATATAGA+TGG | - | chr7_4:38454642-38454661 | Msa1152680:CDS | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | + | chr7_4:38454647-38454666 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | - | chr7_4:38454661-38454680 | Msa1152680:CDS | 30.0% |
| AAGTAGACAAACAAACTAAG+TGG | + | chr7_4:38454719-38454738 | None:intergenic | 30.0% | |
| TCCTATTATATGAGTTCCAT+TGG | - | chr7_4:38454742-38454761 | Msa1152680:CDS | 30.0% | |
| ACCAATGGAACTCATATAAT+AGG | + | chr7_4:38454746-38454765 | None:intergenic | 30.0% | |
| AAGTTCAAGGAACATTATGT+GGG | + | chr7_4:38454852-38454871 | None:intergenic | 30.0% | |
| ATATATACCTTGTACTGTCA+AGG | - | chr7_4:38454876-38454895 | Msa1152680:CDS | 30.0% | |
| TATATACCTTGTACTGTCAA+GGG | - | chr7_4:38454877-38454896 | Msa1152680:CDS | 30.0% | |
| AAATCGTGACATGATTATCA+AGG | + | chr7_4:38454981-38455000 | None:intergenic | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | + | chr7_4:38455234-38455253 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | + | chr7_4:38455278-38455297 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | - | chr7_4:38455280-38455299 | Msa1152680:intron | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | - | chr7_4:38455310-38455329 | Msa1152680:intron | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | - | chr7_4:38455311-38455330 | Msa1152680:intron | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | + | chr7_4:38455474-38455493 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | - | chr7_4:38455473-38455492 | Msa1152680:intron | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | + | chr7_4:38455586-38455605 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | + | chr7_4:38455590-38455609 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | - | chr7_4:38455589-38455608 | Msa1152680:intron | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | - | chr7_4:38455590-38455609 | Msa1152680:intron | 30.0% | |
| ! | TGTTTTCGACTATCCTAATT+TGG | - | chr7_4:38454610-38454629 | Msa1152680:CDS | 30.0% |
| TTGAAGATATGGAGAGAATT+TGG | + | chr7_4:38454636-38454655 | None:intergenic | 30.0% | |
| CTCCATATCTTCAATATAGA+TGG | - | chr7_4:38454642-38454661 | Msa1152680:CDS | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | + | chr7_4:38454647-38454666 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | - | chr7_4:38454661-38454680 | Msa1152680:CDS | 30.0% |
| AAGTAGACAAACAAACTAAG+TGG | + | chr7_4:38454719-38454738 | None:intergenic | 30.0% | |
| TCCTATTATATGAGTTCCAT+TGG | - | chr7_4:38454742-38454761 | Msa1152680:CDS | 30.0% | |
| ACCAATGGAACTCATATAAT+AGG | + | chr7_4:38454746-38454765 | None:intergenic | 30.0% | |
| AAGTTCAAGGAACATTATGT+GGG | + | chr7_4:38454852-38454871 | None:intergenic | 30.0% | |
| ATATATACCTTGTACTGTCA+AGG | - | chr7_4:38454876-38454895 | Msa1152680:CDS | 30.0% | |
| TATATACCTTGTACTGTCAA+GGG | - | chr7_4:38454877-38454896 | Msa1152680:CDS | 30.0% | |
| AAATCGTGACATGATTATCA+AGG | + | chr7_4:38454981-38455000 | None:intergenic | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | + | chr7_4:38455234-38455253 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | + | chr7_4:38455278-38455297 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | - | chr7_4:38455280-38455299 | Msa1152680:intron | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | - | chr7_4:38455310-38455329 | Msa1152680:intron | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | - | chr7_4:38455311-38455330 | Msa1152680:intron | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | + | chr7_4:38455474-38455493 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | - | chr7_4:38455473-38455492 | Msa1152680:intron | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | + | chr7_4:38455586-38455605 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | + | chr7_4:38455590-38455609 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | - | chr7_4:38455589-38455608 | Msa1152680:intron | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | - | chr7_4:38455590-38455609 | Msa1152680:intron | 30.0% | |
| AAACTAAGTGGAGAGAAAGA+GGG | + | chr7_4:38454707-38454726 | None:intergenic | 35.0% | |
| ! | TGAGTTCCATTGGTTAGTAA+AGG | - | chr7_4:38454752-38454771 | Msa1152680:CDS | 35.0% |
| GAAGTTCAAGGAACATTATG+TGG | + | chr7_4:38454853-38454872 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | + | chr7_4:38455271-38455290 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | - | chr7_4:38455341-38455360 | Msa1152680:intron | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | + | chr7_4:38455374-38455393 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | + | chr7_4:38455381-38455400 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | - | chr7_4:38455461-38455480 | Msa1152680:intron | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | + | chr7_4:38455548-38455567 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | - | chr7_4:38455591-38455610 | Msa1152680:intron | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | - | chr7_4:38455592-38455611 | Msa1152680:intron | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | - | chr7_4:38455660-38455679 | Msa1152680:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | - | chr7_4:38455695-38455714 | Msa1152680:CDS | 35.0% | |
| AAACTAAGTGGAGAGAAAGA+GGG | + | chr7_4:38454707-38454726 | None:intergenic | 35.0% | |
| ! | TGAGTTCCATTGGTTAGTAA+AGG | - | chr7_4:38454752-38454771 | Msa1152680:CDS | 35.0% |
| GAAGTTCAAGGAACATTATG+TGG | + | chr7_4:38454853-38454872 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | + | chr7_4:38455271-38455290 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | - | chr7_4:38455341-38455360 | Msa1152680:intron | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | + | chr7_4:38455374-38455393 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | + | chr7_4:38455381-38455400 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | - | chr7_4:38455461-38455480 | Msa1152680:intron | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | + | chr7_4:38455548-38455567 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | - | chr7_4:38455591-38455610 | Msa1152680:intron | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | - | chr7_4:38455592-38455611 | Msa1152680:intron | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | - | chr7_4:38455660-38455679 | Msa1152680:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | - | chr7_4:38455695-38455714 | Msa1152680:CDS | 35.0% | |
| GGAGAGAATTTGGCCAAATT+AGG | + | chr7_4:38454626-38454645 | None:intergenic | 40.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | + | chr7_4:38454698-38454717 | None:intergenic | 40.0% | |
| CAAACTAAGTGGAGAGAAAG+AGG | + | chr7_4:38454708-38454727 | None:intergenic | 40.0% | |
| ! | GTTCCATTGGTTAGTAAAGG+CGG | - | chr7_4:38454755-38454774 | Msa1152680:CDS | 40.0% |
| ATGTGAGAGATTCACACTTG+AGG | - | chr7_4:38454791-38454810 | Msa1152680:CDS | 40.0% | |
| TGTGAGAGATTCACACTTGA+GGG | - | chr7_4:38454792-38454811 | Msa1152680:CDS | 40.0% | |
| ACACTTGAGGGGATGATTAA+TGG | - | chr7_4:38454804-38454823 | Msa1152680:CDS | 40.0% | |
| ! | AATGAAGCACTCTCATGCAT+CGG | + | chr7_4:38454929-38454948 | None:intergenic | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | - | chr7_4:38455187-38455206 | Msa1152680:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | - | chr7_4:38455264-38455283 | Msa1152680:intron | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | - | chr7_4:38455265-38455284 | Msa1152680:intron | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | - | chr7_4:38455266-38455285 | Msa1152680:intron | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | + | chr7_4:38455270-38455289 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | - | chr7_4:38455267-38455286 | Msa1152680:intron | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | - | chr7_4:38455315-38455334 | Msa1152680:intron | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | - | chr7_4:38455329-38455348 | Msa1152680:intron | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | + | chr7_4:38455375-38455394 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | + | chr7_4:38455405-38455424 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | + | chr7_4:38455411-38455430 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | - | chr7_4:38455466-38455485 | Msa1152680:intron | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | - | chr7_4:38455480-38455499 | Msa1152680:intron | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | - | chr7_4:38455570-38455589 | Msa1152680:intron | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | + | chr7_4:38455631-38455650 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | - | chr7_4:38455655-38455674 | Msa1152680:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | - | chr7_4:38455675-38455694 | Msa1152680:CDS | 40.0% |
| GGAGAGAATTTGGCCAAATT+AGG | + | chr7_4:38454626-38454645 | None:intergenic | 40.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | + | chr7_4:38454698-38454717 | None:intergenic | 40.0% | |
| CAAACTAAGTGGAGAGAAAG+AGG | + | chr7_4:38454708-38454727 | None:intergenic | 40.0% | |
| ! | GTTCCATTGGTTAGTAAAGG+CGG | - | chr7_4:38454755-38454774 | Msa1152680:CDS | 40.0% |
| ATGTGAGAGATTCACACTTG+AGG | - | chr7_4:38454791-38454810 | Msa1152680:CDS | 40.0% | |
| TGTGAGAGATTCACACTTGA+GGG | - | chr7_4:38454792-38454811 | Msa1152680:CDS | 40.0% | |
| ACACTTGAGGGGATGATTAA+TGG | - | chr7_4:38454804-38454823 | Msa1152680:CDS | 40.0% | |
| ! | AATGAAGCACTCTCATGCAT+CGG | + | chr7_4:38454929-38454948 | None:intergenic | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | - | chr7_4:38455187-38455206 | Msa1152680:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | - | chr7_4:38455264-38455283 | Msa1152680:intron | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | - | chr7_4:38455265-38455284 | Msa1152680:intron | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | - | chr7_4:38455266-38455285 | Msa1152680:intron | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | + | chr7_4:38455270-38455289 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | - | chr7_4:38455267-38455286 | Msa1152680:intron | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | - | chr7_4:38455315-38455334 | Msa1152680:intron | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | - | chr7_4:38455329-38455348 | Msa1152680:intron | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | + | chr7_4:38455375-38455394 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | + | chr7_4:38455405-38455424 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | + | chr7_4:38455411-38455430 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | - | chr7_4:38455466-38455485 | Msa1152680:intron | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | - | chr7_4:38455480-38455499 | Msa1152680:intron | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | - | chr7_4:38455570-38455589 | Msa1152680:intron | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | + | chr7_4:38455631-38455650 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | - | chr7_4:38455655-38455674 | Msa1152680:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | - | chr7_4:38455675-38455694 | Msa1152680:CDS | 40.0% |
| GTGAGAGATTCACACTTGAG+GGG | - | chr7_4:38454793-38454812 | Msa1152680:CDS | 45.0% | |
| TTCAGTCCCTTGACAGTACA+AGG | + | chr7_4:38454886-38454905 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | - | chr7_4:38455244-38455263 | Msa1152680:intron | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | - | chr7_4:38455634-38455653 | Msa1152680:intron | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | - | chr7_4:38455681-38455700 | Msa1152680:CDS | 45.0% | |
| GTGAGAGATTCACACTTGAG+GGG | - | chr7_4:38454793-38454812 | Msa1152680:CDS | 45.0% | |
| TTCAGTCCCTTGACAGTACA+AGG | + | chr7_4:38454886-38454905 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | - | chr7_4:38455244-38455263 | Msa1152680:intron | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | - | chr7_4:38455634-38455653 | Msa1152680:intron | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | - | chr7_4:38455681-38455700 | Msa1152680:CDS | 45.0% | |
| GCACCGCCTTTACTAACCAA+TGG | + | chr7_4:38454761-38454780 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | - | chr7_4:38455192-38455211 | Msa1152680:intron | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | + | chr7_4:38455261-38455280 | None:intergenic | 50.0% | |
| GCACCGCCTTTACTAACCAA+TGG | + | chr7_4:38454761-38454780 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | - | chr7_4:38455192-38455211 | Msa1152680:intron | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | + | chr7_4:38455261-38455280 | None:intergenic | 50.0% | |
| AAGCCGCACCGAAAATGACG+AGG | + | chr7_4:38455198-38455217 | None:intergenic | 55.0% | |
| AAGCCGCACCGAAAATGACG+AGG | + | chr7_4:38455198-38455217 | None:intergenic | 55.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | + | chr7_4:38455250-38455269 | None:intergenic | 60.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | + | chr7_4:38455250-38455269 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 38454599 | 38455725 | 38454599 | ID=Msa1152680;Name=Msa1152680 |
| chr7_4 | mRNA | 38454599 | 38455725 | 38454599 | ID=Msa1152680-mRNA-1;Parent=Msa1152680;Name=Msa1152680-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|0|2|0|206 |
| chr7_4 | exon | 38455642 | 38455725 | 38455642 | ID=Msa1152680-mRNA-1:exon:9255;Parent=Msa1152680-mRNA-1 |
| chr7_4 | exon | 38454599 | 38455132 | 38454599 | ID=Msa1152680-mRNA-1:exon:9254;Parent=Msa1152680-mRNA-1 |
| chr7_4 | CDS | 38455642 | 38455725 | 38455642 | ID=Msa1152680-mRNA-1:cds;Parent=Msa1152680-mRNA-1 |
| chr7_4 | CDS | 38454599 | 38455132 | 38454599 | ID=Msa1152680-mRNA-1:cds;Parent=Msa1152680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
