Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063640 | XP_027188768.1 | 64.414 | 222 | 58 | 6 | 1 | 205 | 790 | 1007 | 1.83e-80 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063640 | A0A3Q7XNU8 | 64.414 | 222 | 58 | 6 | 1 | 205 | 790 | 1007 | 8.72e-81 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0783160 | Msa1063640 | 0.817118 | 3.891215e-52 | -8.615850e-47 |
| Msa0414410 | Msa1063640 | 0.807833 | 4.167012e-50 | -8.615850e-47 |
| Msa0414420 | Msa1063640 | 0.807903 | 4.027002e-50 | -8.615850e-47 |
| Msa0452900 | Msa1063640 | 0.803669 | 3.121371e-49 | -8.615850e-47 |
| Msa1024910 | Msa1063640 | 0.849745 | 2.655428e-60 | -8.615850e-47 |
| Msa1063640 | Msa1100980 | 0.804249 | 2.365529e-49 | -8.615850e-47 |
| Msa1063640 | Msa1108900 | 0.941338 | 4.950638e-101 | -8.615850e-47 |
| Msa1063640 | Msa1152680 | 0.872332 | 3.448984e-67 | -8.615850e-47 |
| Msa1063640 | Msa1287810 | 0.813236 | 2.835419e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1063640 | MtrunA17_Chr5g0394041 | 55.446 | 202 | 74 | 5 | 1 | 186 | 497 | 698 | 2.18e-64 | 211 |
| Msa1063640 | MtrunA17_Chr7g0243031 | 54.688 | 192 | 70 | 5 | 1 | 182 | 399 | 583 | 1.23e-59 | 197 |
| Msa1063640 | MtrunA17_Chr7g0242741 | 52.020 | 198 | 71 | 3 | 1 | 177 | 151 | 345 | 5.94e-59 | 191 |
| Msa1063640 | MtrunA17_Chr7g0242791 | 54.696 | 181 | 57 | 4 | 27 | 182 | 3 | 183 | 2.50e-58 | 184 |
| Msa1063640 | MtrunA17_Chr7g0242811 | 53.889 | 180 | 78 | 4 | 1 | 176 | 888 | 1066 | 1.73e-53 | 183 |
| Msa1063640 | MtrunA17_Chr7g0242801 | 49.754 | 203 | 80 | 3 | 1 | 181 | 963 | 1165 | 3.70e-52 | 180 |
| Msa1063640 | MtrunA17_Chr2g0319851 | 50.521 | 192 | 78 | 4 | 1 | 176 | 920 | 1110 | 7.07e-51 | 176 |
| Msa1063640 | MtrunA17_Chr2g0319811 | 50.610 | 164 | 71 | 3 | 1 | 156 | 9 | 170 | 3.37e-49 | 157 |
| Msa1063640 | MtrunA17_Chr2g0319821 | 48.108 | 185 | 84 | 5 | 1 | 181 | 939 | 1115 | 4.21e-46 | 162 |
| Msa1063640 | MtrunA17_Chr2g0319921 | 46.277 | 188 | 90 | 5 | 1 | 181 | 912 | 1095 | 3.59e-45 | 159 |
| Msa1063640 | MtrunA17_Chr2g0319841 | 48.045 | 179 | 75 | 4 | 31 | 195 | 4 | 178 | 3.21e-44 | 147 |
| Msa1063640 | MtrunA17_Chr2g0319831 | 48.052 | 154 | 63 | 5 | 28 | 178 | 23 | 162 | 2.86e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGCGCCACTTAATT+TGG | 0.151359 | 7_2:+55664365 | Msa1063640:CDS |
| ACTTAATTTGGAACGGAATA+TGG | 0.188565 | 7_2:+55664377 | Msa1063640:CDS |
| TGTTGAGAACTTGCAGAATT+TGG | 0.210118 | 7_2:-55664282 | None:intergenic |
| GGAGAGAATTTGACCAAATT+AGG | 0.234884 | 7_2:-55663704 | None:intergenic |
| TTGATGGCAGAAAATATATT+TGG | 0.242328 | 7_2:+55664400 | Msa1063640:CDS |
| TGACGCATCAATGTCTTTCT+TGG | 0.272218 | 7_2:-55664532 | None:intergenic |
| TCTGAGGAATGATGATAAAA+AGG | 0.283542 | 7_2:-55664135 | None:intergenic |
| CTCCATATCTTCAATATAGA+TGG | 0.355510 | 7_2:+55663723 | Msa1063640:CDS |
| TGGCCCGAATACCAATATAA+AGG | 0.374902 | 7_2:+55664168 | Msa1063640:CDS |
| AAAGAAAGATAGAAAGGATA+TGG | 0.381720 | 7_2:-55664318 | None:intergenic |
| AGCCATCTATATTGAAGATA+TGG | 0.385788 | 7_2:-55663725 | None:intergenic |
| GGCCCGAATACCAATATAAA+GGG | 0.393070 | 7_2:+55664169 | Msa1063640:CDS |
| TTGGAACGGAATATGGTTGA+TGG | 0.424841 | 7_2:+55664384 | Msa1063640:CDS |
| ACTTTGATATGCATGTTGAT+TGG | 0.429591 | 7_2:+55664214 | Msa1063640:CDS |
| AAAGGATATGGCAGTGGAAA+AGG | 0.436584 | 7_2:-55664306 | None:intergenic |
| GGTACAGTTACAAGAGGAAC+AGG | 0.445170 | 7_2:+55664585 | Msa1063640:CDS |
| CTTTGATATGCATGTTGATT+GGG | 0.446626 | 7_2:+55664215 | Msa1063640:CDS |
| AACTTGCAGAATTTGGCATT+GGG | 0.461396 | 7_2:-55664275 | None:intergenic |
| CTTTCAAAAGAAAGATAGAA+AGG | 0.468364 | 7_2:-55664324 | None:intergenic |
| ATATTCCGTTCCAAATTAAG+TGG | 0.474436 | 7_2:-55664375 | None:intergenic |
| AAGACATTGATGCGTCAGAC+TGG | 0.484830 | 7_2:+55664538 | Msa1063640:CDS |
| GGAGTAAGCTATTGCTAAAG+AGG | 0.486591 | 7_2:+55664559 | Msa1063640:CDS |
| GAACTTGCAGAATTTGGCAT+TGG | 0.487999 | 7_2:-55664276 | None:intergenic |
| TCTTATAATCAAACCTTGGT+AGG | 0.508204 | 7_2:-55664487 | None:intergenic |
| AGATAGAAAGGATATGGCAG+TGG | 0.522745 | 7_2:-55664312 | None:intergenic |
| AGGTTTGATTATAAGAGAGT+GGG | 0.536441 | 7_2:+55664494 | Msa1063640:CDS |
| AAGGTTTGATTATAAGAGAG+TGG | 0.541445 | 7_2:+55664493 | Msa1063640:CDS |
| AGGAACAGGATTACAAATTG+AGG | 0.558506 | 7_2:+55664599 | Msa1063640:CDS |
| ATGCGCCACTTAATTTGGAA+CGG | 0.571402 | 7_2:+55664370 | Msa1063640:CDS |
| ACTCTCTTATAATCAAACCT+TGG | 0.593748 | 7_2:-55664491 | None:intergenic |
| AAGCTATTGCTAAAGAGGAA+AGG | 0.607189 | 7_2:+55664564 | Msa1063640:CDS |
| AGGAAAGGTACAGTTACAAG+AGG | 0.610459 | 7_2:+55664579 | Msa1063640:CDS |
| ATCGCATTTAAAGCCTACCA+AGG | 0.614912 | 7_2:+55664474 | Msa1063640:CDS |
| GGTTTGATTATAAGAGAGTG+GGG | 0.617044 | 7_2:+55664495 | Msa1063640:CDS |
| GTTTGATTATAAGAGAGTGG+GGG | 0.619112 | 7_2:+55664496 | Msa1063640:CDS |
| GATATGCATGTTGATTGGGT+CGG | 0.625717 | 7_2:+55664219 | Msa1063640:CDS |
| TATTGGTATTCGGGCCACGT+TGG | 0.630025 | 7_2:-55664162 | None:intergenic |
| GCCCGAATACCAATATAAAG+GGG | 0.639867 | 7_2:+55664170 | Msa1063640:CDS |
| GGGCCACGTTGGAATGTCTG+AGG | 0.645948 | 7_2:-55664151 | None:intergenic |
| CCCGAATACCAATATAAAGG+GGG | 0.685847 | 7_2:+55664171 | Msa1063640:CDS |
| AAGCCGCACCGAAAATGACG+AGG | 0.709482 | 7_2:-55664099 | None:intergenic |
| ATTCCTCAGACATTCCAACG+TGG | 0.797381 | 7_2:+55664148 | Msa1063640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATAAATTACTAATCAA+TGG | - | chr7_2:55663898-55663917 | None:intergenic | 15.0% |
| !! | CAATATAAATTACTAATCAA+TGG | - | chr7_2:55663898-55663917 | None:intergenic | 15.0% |
| !! | ATTATGATCAGTTGAATAAA+GGG | - | chr7_2:55663926-55663945 | None:intergenic | 20.0% |
| !! | AATTATGATCAGTTGAATAA+AGG | - | chr7_2:55663927-55663946 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | + | chr7_2:55664068-55664087 | Msa1063640:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | + | chr7_2:55664326-55664345 | Msa1063640:CDS | 20.0% |
| !! | ATTATGATCAGTTGAATAAA+GGG | - | chr7_2:55663926-55663945 | None:intergenic | 20.0% |
| !! | AATTATGATCAGTTGAATAA+AGG | - | chr7_2:55663927-55663946 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTAATTTTCTTC+TGG | + | chr7_2:55664068-55664087 | Msa1063640:intron | 20.0% |
| !!! | TTTCTATCTTTCTTTTGAAA+GGG | + | chr7_2:55664326-55664345 | Msa1063640:CDS | 20.0% |
| ! | TAAAGTAGACAAACAAACTA+GGG | - | chr7_2:55663801-55663820 | None:intergenic | 25.0% |
| ! | ATAAAGTAGACAAACAAACT+AGG | - | chr7_2:55663802-55663821 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | - | chr7_2:55663925-55663944 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | + | chr7_2:55664074-55664093 | Msa1063640:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | - | chr7_2:55664321-55664340 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | - | chr7_2:55664327-55664346 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | + | chr7_2:55664325-55664344 | Msa1063640:CDS | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | + | chr7_2:55664400-55664419 | Msa1063640:CDS | 25.0% |
| ! | TAAAGTAGACAAACAAACTA+GGG | - | chr7_2:55663801-55663820 | None:intergenic | 25.0% |
| ! | ATAAAGTAGACAAACAAACT+AGG | - | chr7_2:55663802-55663821 | None:intergenic | 25.0% |
| ! | TTATGATCAGTTGAATAAAG+GGG | - | chr7_2:55663925-55663944 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTCTTCTGGTAC+AGG | + | chr7_2:55664074-55664093 | Msa1063640:intron | 25.0% |
| ! | AAAGAAAGATAGAAAGGATA+TGG | - | chr7_2:55664321-55664340 | None:intergenic | 25.0% |
| ! | CTTTCAAAAGAAAGATAGAA+AGG | - | chr7_2:55664327-55664346 | None:intergenic | 25.0% |
| !! | CTTTCTATCTTTCTTTTGAA+AGG | + | chr7_2:55664325-55664344 | Msa1063640:CDS | 25.0% |
| !! | TTGATGGCAGAAAATATATT+TGG | + | chr7_2:55664400-55664419 | Msa1063640:CDS | 25.0% |
| ! | TGTTTTCGACTATCCTAATT+TGG | + | chr7_2:55663691-55663710 | Msa1063640:CDS | 30.0% |
| CTCCATATCTTCAATATAGA+TGG | + | chr7_2:55663723-55663742 | Msa1063640:CDS | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | - | chr7_2:55663728-55663747 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | + | chr7_2:55663742-55663761 | Msa1063640:CDS | 30.0% |
| AAAGTAGACAAACAAACTAG+GGG | - | chr7_2:55663800-55663819 | None:intergenic | 30.0% | |
| TTGGCAAACACACATATAAT+AGG | - | chr7_2:55663826-55663845 | None:intergenic | 30.0% | |
| ATTATATGTGTGTTTGCCAA+TGG | + | chr7_2:55663826-55663845 | Msa1063640:intron | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | - | chr7_2:55664138-55664157 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | - | chr7_2:55664182-55664201 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | + | chr7_2:55664184-55664203 | Msa1063640:CDS | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | + | chr7_2:55664214-55664233 | Msa1063640:CDS | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | + | chr7_2:55664215-55664234 | Msa1063640:CDS | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | - | chr7_2:55664378-55664397 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | + | chr7_2:55664377-55664396 | Msa1063640:CDS | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | - | chr7_2:55664490-55664509 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | - | chr7_2:55664494-55664513 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | + | chr7_2:55664493-55664512 | Msa1063640:CDS | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | + | chr7_2:55664494-55664513 | Msa1063640:CDS | 30.0% | |
| ! | TGTTTTCGACTATCCTAATT+TGG | + | chr7_2:55663691-55663710 | Msa1063640:CDS | 30.0% |
| CTCCATATCTTCAATATAGA+TGG | + | chr7_2:55663723-55663742 | Msa1063640:CDS | 30.0% | |
| AGCCATCTATATTGAAGATA+TGG | - | chr7_2:55663728-55663747 | None:intergenic | 30.0% | |
| ! | ATGGCTACAAAGACATTTTA+AGG | + | chr7_2:55663742-55663761 | Msa1063640:CDS | 30.0% |
| AAAGTAGACAAACAAACTAG+GGG | - | chr7_2:55663800-55663819 | None:intergenic | 30.0% | |
| TTGGCAAACACACATATAAT+AGG | - | chr7_2:55663826-55663845 | None:intergenic | 30.0% | |
| ATTATATGTGTGTTTGCCAA+TGG | + | chr7_2:55663826-55663845 | Msa1063640:intron | 30.0% | |
| TCTGAGGAATGATGATAAAA+AGG | - | chr7_2:55664138-55664157 | None:intergenic | 30.0% | |
| TTATTGAACCCCCTTTATAT+TGG | - | chr7_2:55664182-55664201 | None:intergenic | 30.0% | |
| ATAAAGGGGGTTCAATAATA+AGG | + | chr7_2:55664184-55664203 | Msa1063640:CDS | 30.0% | |
| ACTTTGATATGCATGTTGAT+TGG | + | chr7_2:55664214-55664233 | Msa1063640:CDS | 30.0% | |
| ! | CTTTGATATGCATGTTGATT+GGG | + | chr7_2:55664215-55664234 | Msa1063640:CDS | 30.0% |
| ATATTCCGTTCCAAATTAAG+TGG | - | chr7_2:55664378-55664397 | None:intergenic | 30.0% | |
| ! | ACTTAATTTGGAACGGAATA+TGG | + | chr7_2:55664377-55664396 | Msa1063640:CDS | 30.0% |
| TCTTATAATCAAACCTTGGT+AGG | - | chr7_2:55664490-55664509 | None:intergenic | 30.0% | |
| ACTCTCTTATAATCAAACCT+TGG | - | chr7_2:55664494-55664513 | None:intergenic | 30.0% | |
| AAGGTTTGATTATAAGAGAG+TGG | + | chr7_2:55664493-55664512 | Msa1063640:CDS | 30.0% | |
| AGGTTTGATTATAAGAGAGT+GGG | + | chr7_2:55664494-55664513 | Msa1063640:CDS | 30.0% | |
| GGAGAGAATTTGACCAAATT+AGG | - | chr7_2:55663707-55663726 | None:intergenic | 35.0% | |
| GAATTCCTACAGTATACCAT+TGG | - | chr7_2:55663845-55663864 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | - | chr7_2:55664175-55664194 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | + | chr7_2:55664245-55664264 | Msa1063640:CDS | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | - | chr7_2:55664278-55664297 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | - | chr7_2:55664285-55664304 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | + | chr7_2:55664365-55664384 | Msa1063640:CDS | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | - | chr7_2:55664452-55664471 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | + | chr7_2:55664495-55664514 | Msa1063640:CDS | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | + | chr7_2:55664496-55664515 | Msa1063640:CDS | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | + | chr7_2:55664564-55664583 | Msa1063640:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | + | chr7_2:55664599-55664618 | Msa1063640:CDS | 35.0% | |
| GGAGAGAATTTGACCAAATT+AGG | - | chr7_2:55663707-55663726 | None:intergenic | 35.0% | |
| GAATTCCTACAGTATACCAT+TGG | - | chr7_2:55663845-55663864 | None:intergenic | 35.0% | |
| ACCCCCTTTATATTGGTATT+CGG | - | chr7_2:55664175-55664194 | None:intergenic | 35.0% | |
| ! | TGTCTTTTCGGTACAATTTG+AGG | + | chr7_2:55664245-55664264 | Msa1063640:CDS | 35.0% |
| AACTTGCAGAATTTGGCATT+GGG | - | chr7_2:55664278-55664297 | None:intergenic | 35.0% | |
| TGTTGAGAACTTGCAGAATT+TGG | - | chr7_2:55664285-55664304 | None:intergenic | 35.0% | |
| ATTTGATGCGCCACTTAATT+TGG | + | chr7_2:55664365-55664384 | Msa1063640:CDS | 35.0% | |
| ! | GTGCTTCTGTTTTCACAAAA+TGG | - | chr7_2:55664452-55664471 | None:intergenic | 35.0% |
| GGTTTGATTATAAGAGAGTG+GGG | + | chr7_2:55664495-55664514 | Msa1063640:CDS | 35.0% | |
| GTTTGATTATAAGAGAGTGG+GGG | + | chr7_2:55664496-55664515 | Msa1063640:CDS | 35.0% | |
| AAGCTATTGCTAAAGAGGAA+AGG | + | chr7_2:55664564-55664583 | Msa1063640:CDS | 35.0% | |
| AGGAACAGGATTACAAATTG+AGG | + | chr7_2:55664599-55664618 | Msa1063640:CDS | 35.0% | |
| GGAGAGAAAGAGGGAAATAT+AGG | - | chr7_2:55663779-55663798 | None:intergenic | 40.0% | |
| GTTTGCCAATGGTATACTGT+AGG | + | chr7_2:55663837-55663856 | Msa1063640:intron | 40.0% | |
| TGTAGGAATTCAAGTGTGAC+TGG | + | chr7_2:55663854-55663873 | Msa1063640:intron | 40.0% | |
| ! | TCAAGTGTGACTGGTTAGTT+AGG | + | chr7_2:55663863-55663882 | Msa1063640:intron | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | + | chr7_2:55664091-55664110 | Msa1063640:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | + | chr7_2:55664168-55664187 | Msa1063640:CDS | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | + | chr7_2:55664169-55664188 | Msa1063640:CDS | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | + | chr7_2:55664170-55664189 | Msa1063640:CDS | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | - | chr7_2:55664174-55664193 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | + | chr7_2:55664171-55664190 | Msa1063640:CDS | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | + | chr7_2:55664219-55664238 | Msa1063640:CDS | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | + | chr7_2:55664233-55664252 | Msa1063640:CDS | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | - | chr7_2:55664279-55664298 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | - | chr7_2:55664309-55664328 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | - | chr7_2:55664315-55664334 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | + | chr7_2:55664370-55664389 | Msa1063640:CDS | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | + | chr7_2:55664384-55664403 | Msa1063640:CDS | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | + | chr7_2:55664474-55664493 | Msa1063640:CDS | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | - | chr7_2:55664535-55664554 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | + | chr7_2:55664559-55664578 | Msa1063640:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | + | chr7_2:55664579-55664598 | Msa1063640:CDS | 40.0% |
| GGAGAGAAAGAGGGAAATAT+AGG | - | chr7_2:55663779-55663798 | None:intergenic | 40.0% | |
| GTTTGCCAATGGTATACTGT+AGG | + | chr7_2:55663837-55663856 | Msa1063640:intron | 40.0% | |
| TGTAGGAATTCAAGTGTGAC+TGG | + | chr7_2:55663854-55663873 | Msa1063640:intron | 40.0% | |
| ! | TCAAGTGTGACTGGTTAGTT+AGG | + | chr7_2:55663863-55663882 | Msa1063640:intron | 40.0% |
| !! | TACAGGAACCTCGTCATTTT+CGG | + | chr7_2:55664091-55664110 | Msa1063640:intron | 40.0% |
| TGGCCCGAATACCAATATAA+AGG | + | chr7_2:55664168-55664187 | Msa1063640:CDS | 40.0% | |
| GGCCCGAATACCAATATAAA+GGG | + | chr7_2:55664169-55664188 | Msa1063640:CDS | 40.0% | |
| GCCCGAATACCAATATAAAG+GGG | + | chr7_2:55664170-55664189 | Msa1063640:CDS | 40.0% | |
| CCCCCTTTATATTGGTATTC+GGG | - | chr7_2:55664174-55664193 | None:intergenic | 40.0% | |
| CCCGAATACCAATATAAAGG+GGG | + | chr7_2:55664171-55664190 | Msa1063640:CDS | 40.0% | |
| ! | GATATGCATGTTGATTGGGT+CGG | + | chr7_2:55664219-55664238 | Msa1063640:CDS | 40.0% |
| !! | TTGGGTCGGTTTTGTCTTTT+CGG | + | chr7_2:55664233-55664252 | Msa1063640:CDS | 40.0% |
| GAACTTGCAGAATTTGGCAT+TGG | - | chr7_2:55664279-55664298 | None:intergenic | 40.0% | |
| AAAGGATATGGCAGTGGAAA+AGG | - | chr7_2:55664309-55664328 | None:intergenic | 40.0% | |
| AGATAGAAAGGATATGGCAG+TGG | - | chr7_2:55664315-55664334 | None:intergenic | 40.0% | |
| ! | ATGCGCCACTTAATTTGGAA+CGG | + | chr7_2:55664370-55664389 | Msa1063640:CDS | 40.0% |
| TTGGAACGGAATATGGTTGA+TGG | + | chr7_2:55664384-55664403 | Msa1063640:CDS | 40.0% | |
| ! | ATCGCATTTAAAGCCTACCA+AGG | + | chr7_2:55664474-55664493 | Msa1063640:CDS | 40.0% |
| TGACGCATCAATGTCTTTCT+TGG | - | chr7_2:55664535-55664554 | None:intergenic | 40.0% | |
| GGAGTAAGCTATTGCTAAAG+AGG | + | chr7_2:55664559-55664578 | Msa1063640:CDS | 40.0% | |
| ! | AGGAAAGGTACAGTTACAAG+AGG | + | chr7_2:55664579-55664598 | Msa1063640:CDS | 40.0% |
| CAAACTAGGGGAGAGAAAGA+GGG | - | chr7_2:55663788-55663807 | None:intergenic | 45.0% | |
| ACAAACTAGGGGAGAGAAAG+AGG | - | chr7_2:55663789-55663808 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | + | chr7_2:55664148-55664167 | Msa1063640:CDS | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | + | chr7_2:55664538-55664557 | Msa1063640:CDS | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | + | chr7_2:55664585-55664604 | Msa1063640:CDS | 45.0% | |
| CAAACTAGGGGAGAGAAAGA+GGG | - | chr7_2:55663788-55663807 | None:intergenic | 45.0% | |
| ACAAACTAGGGGAGAGAAAG+AGG | - | chr7_2:55663789-55663808 | None:intergenic | 45.0% | |
| ATTCCTCAGACATTCCAACG+TGG | + | chr7_2:55664148-55664167 | Msa1063640:CDS | 45.0% | |
| AAGACATTGATGCGTCAGAC+TGG | + | chr7_2:55664538-55664557 | Msa1063640:CDS | 45.0% | |
| GGTACAGTTACAAGAGGAAC+AGG | + | chr7_2:55664585-55664604 | Msa1063640:CDS | 45.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | + | chr7_2:55664096-55664115 | Msa1063640:CDS | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | - | chr7_2:55664165-55664184 | None:intergenic | 50.0% | |
| !! | GAACCTCGTCATTTTCGGTG+CGG | + | chr7_2:55664096-55664115 | Msa1063640:CDS | 50.0% |
| TATTGGTATTCGGGCCACGT+TGG | - | chr7_2:55664165-55664184 | None:intergenic | 50.0% | |
| AAGCCGCACCGAAAATGACG+AGG | - | chr7_2:55664102-55664121 | None:intergenic | 55.0% | |
| AAGCCGCACCGAAAATGACG+AGG | - | chr7_2:55664102-55664121 | None:intergenic | 55.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | - | chr7_2:55664154-55664173 | None:intergenic | 60.0% | |
| GGGCCACGTTGGAATGTCTG+AGG | - | chr7_2:55664154-55664173 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 55663680 | 55664629 | 55663680 | ID=Msa1063640;Name=Msa1063640 |
| chr7_2 | mRNA | 55663680 | 55664629 | 55663680 | ID=Msa1063640-mRNA-1;Parent=Msa1063640;Name=Msa1063640-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|0|2|0|206 |
| chr7_2 | exon | 55663680 | 55663763 | 55663680 | ID=Msa1063640-mRNA-1:exon:10448;Parent=Msa1063640-mRNA-1 |
| chr7_2 | exon | 55664096 | 55664629 | 55664096 | ID=Msa1063640-mRNA-1:exon:10449;Parent=Msa1063640-mRNA-1 |
| chr7_2 | CDS | 55663680 | 55663763 | 55663680 | ID=Msa1063640-mRNA-1:cds;Parent=Msa1063640-mRNA-1 |
| chr7_2 | CDS | 55664096 | 55664629 | 55664096 | ID=Msa1063640-mRNA-1:cds;Parent=Msa1063640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
