Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111010 | XP_013449296.1 | 97.605 | 334 | 8 | 0 | 1 | 334 | 1 | 334 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111010 | sp|Q8VYJ2|AHL1_ARATH | 56.811 | 301 | 91 | 8 | 6 | 269 | 17 | 315 | 2.07e-95 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111010 | A0A072U297 | 97.605 | 334 | 8 | 0 | 1 | 334 | 1 | 334 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604750 | Msa1111010 | 0.801830 | 7.482330e-49 | -8.615850e-47 |
| Msa1065400 | Msa1111010 | 0.808786 | 2.609728e-50 | -8.615850e-47 |
| Msa1111010 | Msa1299980 | 0.800470 | 1.419600e-48 | -8.615850e-47 |
| Msa1111010 | Msa1356450 | 0.803520 | 3.351779e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111010 | MtrunA17_Chr7g0245841 | 97.605 | 334 | 8 | 0 | 1 | 334 | 1 | 334 | 0.0 | 665 |
| Msa1111010 | MtrunA17_Chr8g0351761 | 69.916 | 359 | 81 | 8 | 1 | 334 | 1 | 357 | 1.10e-151 | 430 |
| Msa1111010 | MtrunA17_Chr4g0056761 | 54.701 | 351 | 119 | 11 | 1 | 332 | 1 | 330 | 5.57e-78 | 241 |
| Msa1111010 | MtrunA17_Chr1g0188211 | 47.619 | 336 | 129 | 10 | 1 | 315 | 1 | 310 | 4.17e-77 | 239 |
| Msa1111010 | MtrunA17_Chr1g0179461 | 42.581 | 310 | 129 | 10 | 60 | 333 | 69 | 365 | 2.28e-64 | 207 |
| Msa1111010 | MtrunA17_Chr6g0476061 | 45.745 | 282 | 115 | 8 | 1 | 263 | 1 | 263 | 1.15e-58 | 191 |
| Msa1111010 | MtrunA17_Chr5g0398621 | 47.773 | 247 | 97 | 8 | 15 | 253 | 4 | 226 | 1.74e-56 | 184 |
| Msa1111010 | MtrunA17_Chr8g0349091 | 46.288 | 229 | 110 | 3 | 60 | 278 | 89 | 314 | 2.14e-52 | 176 |
| Msa1111010 | MtrunA17_Chr5g0397551 | 44.737 | 228 | 113 | 5 | 58 | 278 | 68 | 289 | 4.26e-52 | 174 |
| Msa1111010 | MtrunA17_Chr7g0247431 | 45.022 | 231 | 119 | 2 | 56 | 278 | 85 | 315 | 4.90e-49 | 167 |
| Msa1111010 | MtrunA17_Chr4g0054661 | 48.792 | 207 | 79 | 5 | 48 | 243 | 67 | 257 | 5.03e-49 | 167 |
| Msa1111010 | MtrunA17_Chr8g0386741 | 45.022 | 231 | 110 | 5 | 59 | 278 | 96 | 320 | 1.14e-48 | 166 |
| Msa1111010 | MtrunA17_Chr1g0190011 | 40.260 | 231 | 131 | 5 | 60 | 287 | 43 | 269 | 3.74e-36 | 133 |
| Msa1111010 | MtrunA17_Chr7g0274821 | 44.792 | 192 | 101 | 3 | 60 | 249 | 74 | 262 | 8.85e-35 | 130 |
| Msa1111010 | MtrunA17_Chr1g0165101 | 40.889 | 225 | 105 | 8 | 38 | 242 | 62 | 278 | 7.46e-34 | 127 |
| Msa1111010 | MtrunA17_Chr4g0027331 | 52.893 | 121 | 54 | 2 | 119 | 236 | 11 | 131 | 1.17e-33 | 120 |
| Msa1111010 | MtrunA17_Chr6g0476241 | 42.574 | 202 | 99 | 7 | 60 | 260 | 120 | 305 | 3.60e-33 | 124 |
| Msa1111010 | MtrunA17_Chr4g0027351 | 52.500 | 120 | 54 | 2 | 119 | 237 | 11 | 128 | 4.66e-33 | 119 |
| Msa1111010 | MtrunA17_Chr4g0027371 | 48.905 | 137 | 65 | 3 | 120 | 251 | 12 | 148 | 6.77e-33 | 122 |
| Msa1111010 | MtrunA17_Chr4g0027301 | 42.742 | 124 | 68 | 2 | 117 | 237 | 16 | 139 | 3.51e-24 | 96.3 |
| Msa1111010 | MtrunA17_Chr5g0417581 | 41.007 | 139 | 62 | 4 | 121 | 242 | 13 | 148 | 4.90e-24 | 97.4 |
| Msa1111010 | MtrunA17_Chr3g0133051 | 40.000 | 115 | 68 | 1 | 129 | 242 | 103 | 217 | 1.20e-21 | 93.2 |
| Msa1111010 | MtrunA17_Chr3g0112131 | 43.363 | 113 | 61 | 1 | 130 | 242 | 109 | 218 | 3.40e-20 | 89.4 |
| Msa1111010 | MtrunA17_Chr5g0427311 | 40.517 | 116 | 65 | 3 | 129 | 242 | 82 | 195 | 4.40e-20 | 87.8 |
| Msa1111010 | MtrunA17_Chr5g0443311 | 32.487 | 197 | 90 | 3 | 47 | 243 | 38 | 191 | 2.85e-17 | 80.1 |
| Msa1111010 | MtrunA17_Chr8g0351651 | 46.903 | 113 | 57 | 1 | 130 | 242 | 116 | 225 | 2.95e-17 | 80.9 |
| Msa1111010 | MtrunA17_Chr4g0054651 | 45.614 | 114 | 57 | 2 | 130 | 242 | 106 | 215 | 3.40e-17 | 80.9 |
| Msa1111010 | MtrunA17_Chr1g0168121 | 41.593 | 113 | 63 | 1 | 130 | 242 | 72 | 181 | 4.60e-17 | 80.1 |
| Msa1111010 | MtrunA17_Chr7g0250031 | 52.239 | 67 | 32 | 0 | 130 | 196 | 87 | 153 | 4.62e-17 | 79.7 |
| Msa1111010 | MtrunA17_Chr5g0400531 | 45.802 | 131 | 50 | 7 | 63 | 182 | 123 | 243 | 8.18e-17 | 79.0 |
| Msa1111010 | MtrunA17_Chr3g0086021 | 42.056 | 107 | 56 | 2 | 139 | 242 | 118 | 221 | 8.22e-17 | 79.7 |
| Msa1111010 | MtrunA17_Chr5g0398531 | 43.363 | 113 | 61 | 1 | 130 | 242 | 130 | 239 | 1.96e-16 | 79.0 |
| Msa1111010 | MtrunA17_Chr1g0190051 | 44.248 | 113 | 60 | 1 | 130 | 242 | 104 | 213 | 2.17e-15 | 75.5 |
| Msa1111010 | MtrunA17_Chr5g0398591 | 37.121 | 132 | 56 | 3 | 179 | 310 | 11 | 115 | 5.45e-14 | 67.8 |
| Msa1111010 | MtrunA17_Chr5g0435681 | 40.179 | 112 | 64 | 1 | 131 | 242 | 120 | 228 | 6.22e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1111010 | AT4G12080.1 | 56.811 | 301 | 91 | 8 | 6 | 269 | 17 | 315 | 2.10e-96 | 290 |
| Msa1111010 | AT4G22770.2 | 59.206 | 277 | 88 | 10 | 6 | 261 | 13 | 285 | 5.83e-79 | 244 |
| Msa1111010 | AT4G22770.1 | 59.206 | 277 | 88 | 10 | 6 | 261 | 13 | 285 | 5.83e-79 | 244 |
| Msa1111010 | AT4G25320.1 | 56.757 | 222 | 76 | 3 | 48 | 250 | 69 | 289 | 1.53e-76 | 241 |
| Msa1111010 | AT4G00200.2 | 52.537 | 335 | 112 | 13 | 14 | 332 | 13 | 316 | 2.94e-76 | 237 |
| Msa1111010 | AT4G00200.1 | 52.537 | 335 | 112 | 13 | 14 | 332 | 13 | 316 | 2.94e-76 | 237 |
| Msa1111010 | AT5G62260.1 | 57.746 | 213 | 71 | 5 | 60 | 254 | 76 | 287 | 3.93e-69 | 221 |
| Msa1111010 | AT5G62260.3 | 57.746 | 213 | 71 | 5 | 60 | 254 | 76 | 287 | 3.93e-69 | 221 |
| Msa1111010 | AT5G51590.1 | 55.909 | 220 | 60 | 4 | 59 | 243 | 77 | 294 | 1.65e-67 | 218 |
| Msa1111010 | AT5G62260.2 | 55.140 | 214 | 76 | 6 | 60 | 254 | 76 | 288 | 1.87e-64 | 206 |
| Msa1111010 | AT2G33620.1 | 52.511 | 219 | 92 | 5 | 59 | 274 | 96 | 305 | 2.02e-64 | 207 |
| Msa1111010 | AT2G33620.4 | 52.511 | 219 | 92 | 5 | 59 | 274 | 96 | 305 | 2.02e-64 | 207 |
| Msa1111010 | AT2G33620.2 | 52.511 | 219 | 92 | 5 | 59 | 274 | 96 | 305 | 2.02e-64 | 207 |
| Msa1111010 | AT2G33620.3 | 52.511 | 219 | 92 | 5 | 59 | 274 | 96 | 305 | 2.02e-64 | 207 |
| Msa1111010 | AT2G45850.1 | 49.761 | 209 | 98 | 3 | 59 | 266 | 97 | 299 | 2.92e-53 | 179 |
| Msa1111010 | AT2G45850.2 | 49.761 | 209 | 98 | 3 | 59 | 266 | 97 | 299 | 2.92e-53 | 179 |
| Msa1111010 | AT1G63470.1 | 49.738 | 191 | 88 | 3 | 59 | 243 | 104 | 292 | 1.10e-51 | 175 |
| Msa1111010 | AT3G61310.1 | 52.688 | 186 | 84 | 2 | 58 | 243 | 99 | 280 | 9.24e-51 | 172 |
| Msa1111010 | AT4G17950.1 | 43.966 | 232 | 95 | 5 | 50 | 251 | 121 | 347 | 8.07e-50 | 172 |
| Msa1111010 | AT2G45850.3 | 50.543 | 184 | 88 | 1 | 59 | 242 | 97 | 277 | 2.96e-49 | 166 |
| Msa1111010 | AT5G46640.1 | 47.619 | 231 | 84 | 7 | 49 | 256 | 87 | 303 | 1.56e-46 | 162 |
| Msa1111010 | AT1G63480.5 | 48.108 | 185 | 89 | 4 | 59 | 243 | 92 | 269 | 3.01e-45 | 158 |
| Msa1111010 | AT1G63480.7 | 48.108 | 185 | 89 | 4 | 59 | 243 | 92 | 269 | 3.01e-45 | 158 |
| Msa1111010 | AT1G63480.4 | 48.108 | 185 | 89 | 4 | 59 | 243 | 92 | 269 | 3.01e-45 | 158 |
| Msa1111010 | AT1G63480.3 | 48.108 | 185 | 89 | 4 | 59 | 243 | 92 | 269 | 3.01e-45 | 158 |
| Msa1111010 | AT1G63480.6 | 48.108 | 185 | 89 | 4 | 59 | 243 | 92 | 269 | 3.01e-45 | 158 |
| Msa1111010 | AT1G63480.2 | 48.108 | 185 | 89 | 4 | 59 | 243 | 98 | 275 | 3.11e-45 | 158 |
| Msa1111010 | AT1G63480.1 | 48.108 | 185 | 89 | 4 | 59 | 243 | 98 | 275 | 3.11e-45 | 158 |
| Msa1111010 | AT3G04590.1 | 44.271 | 192 | 101 | 4 | 59 | 249 | 104 | 290 | 6.44e-39 | 140 |
| Msa1111010 | AT3G04590.2 | 43.284 | 201 | 108 | 4 | 59 | 258 | 104 | 299 | 1.04e-37 | 139 |
| Msa1111010 | AT2G36560.1 | 39.310 | 145 | 85 | 3 | 124 | 265 | 102 | 246 | 3.41e-24 | 103 |
| Msa1111010 | AT5G49700.1 | 36.090 | 133 | 74 | 3 | 129 | 250 | 85 | 217 | 6.30e-20 | 88.6 |
| Msa1111010 | AT3G60870.1 | 39.655 | 116 | 65 | 2 | 127 | 242 | 86 | 196 | 9.21e-20 | 87.8 |
| Msa1111010 | AT1G14490.1 | 35.185 | 162 | 93 | 4 | 101 | 251 | 5 | 165 | 1.61e-19 | 85.9 |
| Msa1111010 | AT1G14490.2 | 35.185 | 162 | 93 | 4 | 101 | 251 | 24 | 184 | 1.68e-19 | 86.3 |
| Msa1111010 | AT3G55560.1 | 41.228 | 114 | 65 | 1 | 130 | 243 | 118 | 229 | 3.06e-17 | 81.3 |
| Msa1111010 | AT5G28590.1 | 35.897 | 156 | 69 | 3 | 123 | 271 | 26 | 157 | 1.31e-16 | 77.8 |
| Msa1111010 | AT2G42940.1 | 43.750 | 112 | 60 | 1 | 132 | 243 | 85 | 193 | 3.95e-16 | 77.4 |
| Msa1111010 | AT1G76500.1 | 36.066 | 122 | 66 | 2 | 130 | 242 | 102 | 220 | 4.03e-15 | 75.1 |
| Msa1111010 | AT2G35270.1 | 37.879 | 132 | 70 | 3 | 130 | 253 | 108 | 235 | 5.47e-15 | 74.7 |
| Msa1111010 | AT4G17800.1 | 47.761 | 67 | 35 | 0 | 130 | 196 | 112 | 178 | 7.37e-15 | 74.3 |
| Msa1111010 | AT4G14465.1 | 43.284 | 67 | 38 | 0 | 130 | 196 | 97 | 163 | 7.75e-15 | 73.9 |
| Msa1111010 | AT2G45430.1 | 39.850 | 133 | 66 | 3 | 130 | 251 | 119 | 248 | 1.30e-13 | 70.9 |
| Msa1111010 | AT4G22810.1 | 36.496 | 137 | 79 | 3 | 130 | 263 | 135 | 266 | 1.47e-13 | 70.9 |
| Msa1111010 | AT4G12050.1 | 37.313 | 134 | 78 | 3 | 130 | 262 | 148 | 276 | 6.71e-13 | 68.9 |
| Msa1111010 | AT3G04570.1 | 38.843 | 121 | 63 | 2 | 130 | 242 | 110 | 227 | 6.81e-13 | 68.9 |
| Msa1111010 | AT4G35390.1 | 39.130 | 115 | 65 | 2 | 130 | 242 | 93 | 204 | 4.68e-12 | 66.2 |
Find 122 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTATGAGTAGGCTAATT+TGG | 0.202437 | 7_3:-56520002 | Msa1111010:three_prime_UTR |
| GAATATCCAGTGTTTGATTT+TGG | 0.212090 | 7_3:-56523388 | Msa1111010:intron |
| GGTGATGCATAATCAGATTT+TGG | 0.223635 | 7_3:+56520497 | None:intergenic |
| CTTCGGTTTCCCCTGCTTCC+CGG | 0.257402 | 7_3:+56522172 | None:intergenic |
| TTCTGGTCTTGTTGGTTACT+TGG | 0.258958 | 7_3:+56520530 | None:intergenic |
| CGGCATTTCGCCGAGAAAAC+TGG | 0.268510 | 7_3:-56520349 | Msa1111010:CDS |
| GATTATCATCTTTAATTATC+AGG | 0.270722 | 7_3:+56520266 | None:intergenic |
| AGGGGTAGACCAAGGAAATA+TGG | 0.299572 | 7_3:-56522275 | Msa1111010:CDS |
| TGTTTCGAACGTGCTATCTA+TGG | 0.308201 | 7_3:-56520154 | Msa1111010:three_prime_UTR |
| AGGTTTGAGTTTAATGTTCC+TGG | 0.314027 | 7_3:+56520383 | None:intergenic |
| GATGAAAATTCATTAGAAAA+AGG | 0.314880 | 7_3:+56522194 | None:intergenic |
| CGAACCTATTGCAGTGTATT+CGG | 0.315054 | 7_3:-56520465 | Msa1111010:CDS |
| AGAGCCACATTTCCTGATTC+AGG | 0.317585 | 7_3:+56522350 | None:intergenic |
| TGGTGTATCACCAGTGAGTC+TGG | 0.319418 | 7_3:-56522327 | Msa1111010:CDS |
| CTTCGTCAGCCTGATTCTTC+TGG | 0.325349 | 7_3:-56521504 | Msa1111010:CDS |
| GTCGTAGGCGGTGGAGTTGC+CGG | 0.328102 | 7_3:-56521098 | Msa1111010:CDS |
| CATGTAACTGTTCCTGAATC+AGG | 0.345936 | 7_3:-56522362 | Msa1111010:CDS |
| CAGACCGGCTTCTTGTTCCT+TGG | 0.373154 | 7_3:+56521159 | None:intergenic |
| TGGGTTGGAGCTTCACTCCT+TGG | 0.378803 | 7_3:+56522386 | None:intergenic |
| TTTGAGATACTTTCACTGTC+TGG | 0.394509 | 7_3:-56521203 | Msa1111010:CDS |
| GTTGCAGCTTTCATTGAGTC+TGG | 0.409280 | 7_3:+56520308 | None:intergenic |
| TTTGGTTTGATTGTATTAAG+AGG | 0.414198 | 7_3:-56522502 | Msa1111010:five_prime_UTR |
| GAGGAACAATTAAGAAGAAA+AGG | 0.421117 | 7_3:-56522295 | Msa1111010:CDS |
| AGGAACAATTAAGAAGAAAA+GGG | 0.426921 | 7_3:-56522294 | Msa1111010:CDS |
| TGCTTGAACTCCATCCCCTT+CGG | 0.429863 | 7_3:+56522155 | None:intergenic |
| GCTTCTTGTTCCTTGGTTGT+CGG | 0.436064 | 7_3:+56521166 | None:intergenic |
| CCGTCTGGCCCATATTTCCT+TGG | 0.437334 | 7_3:+56522266 | None:intergenic |
| TACATCAACCCTTTCACCAT+TGG | 0.444909 | 7_3:+56520430 | None:intergenic |
| TGAACTAGTTAAGTTGTAGA+AGG | 0.447769 | 7_3:-56523474 | Msa1111010:intron |
| AAAGTTCCGCCAGAAGAATC+AGG | 0.448010 | 7_3:+56521495 | None:intergenic |
| TTCAGGAACAGTTACATGTT+GGG | 0.455247 | 7_3:+56522367 | None:intergenic |
| AGCTCCATCAACTTATCATA+TGG | 0.455470 | 7_3:-56522411 | Msa1111010:CDS |
| CAAGGAACAAGAAGCCGGTC+TGG | 0.455999 | 7_3:-56521158 | Msa1111010:CDS |
| TGTTACTTCTGAAGGTGATT+CGG | 0.468780 | 7_3:-56521779 | Msa1111010:intron |
| TAGTTTGATATTTGCATGGA+GGG | 0.470634 | 7_3:-56522476 | Msa1111010:exon |
| CATGATTAAGTCCTCTAGTA+AGG | 0.471279 | 7_3:-56520048 | Msa1111010:three_prime_UTR |
| ATCTATGGTCTAATTACCTT+AGG | 0.472391 | 7_3:-56520139 | Msa1111010:three_prime_UTR |
| ACCCTTTCACCATTGGTTGA+AGG | 0.472536 | 7_3:+56520437 | None:intergenic |
| CCGCCTACGACACGACCATC+AGG | 0.474021 | 7_3:+56521110 | None:intergenic |
| AAGAATGAGCATCACCTCAT+AGG | 0.475647 | 7_3:+56521470 | None:intergenic |
| TCGCGGTCCTTGTTGCGAAA+AGG | 0.476324 | 7_3:+56521572 | None:intergenic |
| GGTGCCGAATACACTGCAAT+AGG | 0.478450 | 7_3:+56520461 | None:intergenic |
| GTTTCAGGACATTACAATGA+AGG | 0.478893 | 7_3:-56521601 | Msa1111010:intron |
| CCATCCATTCCCAGACTCAC+TGG | 0.481076 | 7_3:+56522317 | None:intergenic |
| GATGGTCGTGTCGTAGGCGG+TGG | 0.481762 | 7_3:-56521107 | Msa1111010:CDS |
| TTGGTTTGATTGTATTAAGA+GGG | 0.482271 | 7_3:-56522501 | Msa1111010:five_prime_UTR |
| AAAGGAGCTGAAGACGAGAT+TGG | 0.485690 | 7_3:+56522212 | None:intergenic |
| AAATCACGCCACTAGCAGAT+AGG | 0.488464 | 7_3:+56521538 | None:intergenic |
| CTTGTTCCTTGGTTGTCGGT+AGG | 0.489709 | 7_3:+56521170 | None:intergenic |
| CGGGAAGCAGGGGAAACCGA+AGG | 0.493245 | 7_3:-56522171 | Msa1111010:CDS |
| ACCTTCAACCAATGGTGAAA+GGG | 0.493821 | 7_3:-56520438 | Msa1111010:CDS |
| AACACTGGAGTAACAGTGAT+AGG | 0.495781 | 7_3:-56522440 | Msa1111010:CDS |
| CGAATACACTGCAATAGGTT+CGG | 0.507112 | 7_3:+56520466 | None:intergenic |
| GCAGGGGAAACCGAAGGGGA+TGG | 0.507174 | 7_3:-56522165 | Msa1111010:CDS |
| TGGCGGAACTTTGACCTATG+AGG | 0.508265 | 7_3:-56521484 | Msa1111010:intron |
| AATATTTACCTGCACGGGAG+TGG | 0.512838 | 7_3:+56521061 | None:intergenic |
| GGGAAGCAGGGGAAACCGAA+GGG | 0.513646 | 7_3:-56522170 | Msa1111010:CDS |
| TAGTCAACTACTTCATCCTA+AGG | 0.514067 | 7_3:+56520123 | None:intergenic |
| TGTAGCCGCCACTCCCGTGC+AGG | 0.516493 | 7_3:-56521069 | Msa1111010:intron |
| GGGGTAGACCAAGGAAATAT+GGG | 0.519638 | 7_3:-56522274 | Msa1111010:CDS |
| CACCTTCAACCAATGGTGAA+AGG | 0.520020 | 7_3:-56520439 | Msa1111010:CDS |
| GGCATTTCGCCGAGAAAACT+GGG | 0.521264 | 7_3:-56520348 | Msa1111010:CDS |
| AATGATATGCGGCATAAAGT+TGG | 0.521723 | 7_3:+56521750 | None:intergenic |
| GTTTCTTTGTCAAGCCCTGA+TGG | 0.524286 | 7_3:-56521125 | Msa1111010:CDS |
| CAAGGAAATATGGGCCAGAC+GGG | 0.524549 | 7_3:-56522265 | Msa1111010:CDS |
| GGAATAGTTTGATATTTGCA+TGG | 0.525055 | 7_3:-56522480 | Msa1111010:exon |
| CTCAAACCTTACTTCTCCCT+CGG | 0.528359 | 7_3:-56520369 | Msa1111010:CDS |
| GGAACAGTTACATGTTGGGT+TGG | 0.529114 | 7_3:+56522371 | None:intergenic |
| GAATCAGGAAATGTGGCTCT+TGG | 0.530534 | 7_3:-56522347 | Msa1111010:CDS |
| TGAGAAATATTTACCTGCAC+GGG | 0.532853 | 7_3:+56521056 | None:intergenic |
| CCAGTGAGTCTGGGAATGGA+TGG | 0.537002 | 7_3:-56522317 | Msa1111010:CDS |
| ATTTGCATGGAGGGGAGAGA+AGG | 0.539913 | 7_3:-56522467 | Msa1111010:exon |
| CTTTCACCATTGGTTGAAGG+TGG | 0.543022 | 7_3:+56520440 | None:intergenic |
| ATGAATGTAGTCAGCAACAT+TGG | 0.543200 | 7_3:+56520223 | None:intergenic |
| GGACATCTACTGCAAAATCC+AGG | 0.547090 | 7_3:-56520401 | Msa1111010:CDS |
| TTATTTGAACATTGTTGTTG+TGG | 0.548714 | 7_3:-56523716 | Msa1111010:five_prime_UTR |
| ATTCAGGAACAGTTACATGT+TGG | 0.548859 | 7_3:+56522366 | None:intergenic |
| AAAACTGGAGCTGATCCTCT+AGG | 0.549519 | 7_3:-56522125 | Msa1111010:intron |
| AGCTTTCATTGAGTCTGGCA+TGG | 0.553939 | 7_3:+56520313 | None:intergenic |
| CGTCAGCCTGATTCTTCTGG+CGG | 0.554405 | 7_3:-56521501 | Msa1111010:CDS |
| GGTGCCATATGATAAGTTGA+TGG | 0.559304 | 7_3:+56522407 | None:intergenic |
| GGAACAAGAAGCCGGTCTGG+TGG | 0.561728 | 7_3:-56521155 | Msa1111010:CDS |
| AGTTTGATATTTGCATGGAG+GGG | 0.566173 | 7_3:-56522475 | Msa1111010:exon |
| AGCCCTGATGGTCGTGTCGT+AGG | 0.566452 | 7_3:-56521113 | Msa1111010:CDS |
| GAAATATGGGCCAGACGGGT+CGG | 0.566885 | 7_3:-56522261 | Msa1111010:CDS |
| GACATACCAAAATCAAACAC+TGG | 0.568378 | 7_3:+56523382 | None:intergenic |
| GGTGTATCACCAGTGAGTCT+GGG | 0.571546 | 7_3:-56522326 | Msa1111010:CDS |
| ATTAAGTCCTCTAGTAAGGT+AGG | 0.573194 | 7_3:-56520044 | Msa1111010:three_prime_UTR |
| GGAACAATTAAGAAGAAAAG+GGG | 0.574284 | 7_3:-56522293 | Msa1111010:CDS |
| CCAAGGAAATATGGGCCAGA+CGG | 0.576724 | 7_3:-56522266 | Msa1111010:CDS |
| AATGTAGTCAGCAACATTGG+AGG | 0.584559 | 7_3:+56520226 | None:intergenic |
| GCTGAAGACGAGATTGGCAA+TGG | 0.587359 | 7_3:+56522218 | None:intergenic |
| CATTACCGTCAACGCAGGCG+AGG | 0.588528 | 7_3:-56521731 | Msa1111010:intron |
| AGACGGGTCGGTTACTGCTG+TGG | 0.589790 | 7_3:-56522249 | Msa1111010:CDS |
| CCTGATGGTCGTGTCGTAGG+CGG | 0.594706 | 7_3:-56521110 | Msa1111010:CDS |
| AACAATCTACATGACAACAC+TGG | 0.598775 | 7_3:+56520173 | None:intergenic |
| GTGAGAAATATTTACCTGCA+CGG | 0.599914 | 7_3:+56521055 | None:intergenic |
| ATCACCAGTGAGTCTGGGAA+TGG | 0.600295 | 7_3:-56522321 | Msa1111010:CDS |
| CATATCATTACCGTCAACGC+AGG | 0.608493 | 7_3:-56521736 | Msa1111010:CDS |
| ACTTCTGAAGGTGATTCGGT+CGG | 0.613879 | 7_3:-56521775 | Msa1111010:intron |
| GCAATAGGTTCGGTAACAGT+CGG | 0.615054 | 7_3:+56520476 | None:intergenic |
| AAACACTCATTCCACCAGAC+CGG | 0.616190 | 7_3:+56521144 | None:intergenic |
| TGTTCCTGAATCAGGAAATG+TGG | 0.616245 | 7_3:-56522354 | Msa1111010:CDS |
| ATTTACCTGCACGGGAGTGG+CGG | 0.617409 | 7_3:+56521064 | None:intergenic |
| GGAAGCAGGGGAAACCGAAG+GGG | 0.617839 | 7_3:-56522169 | Msa1111010:CDS |
| AATGTGCAAGTATTATGAGT+AGG | 0.623059 | 7_3:-56520011 | Msa1111010:three_prime_UTR |
| ATAGTTTGATATTTGCATGG+AGG | 0.624040 | 7_3:-56522477 | Msa1111010:exon |
| TCGGCACCACCTTCAACCAA+TGG | 0.624698 | 7_3:-56520446 | Msa1111010:CDS |
| GAAATGCCGAGGGAGAAGTA+AGG | 0.625645 | 7_3:+56520363 | None:intergenic |
| GGGAGAGAAGGTAACAACAC+TGG | 0.626647 | 7_3:-56522455 | Msa1111010:CDS |
| AGTGGCGGCTACAAGAAGAC+CGG | 0.627185 | 7_3:+56521079 | None:intergenic |
| ACAACCAAGGAACAAGAAGC+CGG | 0.627528 | 7_3:-56521163 | Msa1111010:CDS |
| ATATGCATCCTATCTGCTAG+TGG | 0.629472 | 7_3:-56521546 | Msa1111010:CDS |
| GTGAGTCTGGGAATGGATGG+AGG | 0.638692 | 7_3:-56522314 | Msa1111010:CDS |
| AGAAGAAAAGGGGTAGACCA+AGG | 0.648040 | 7_3:-56522283 | Msa1111010:CDS |
| GCATCTACCTACCTTACTAG+AGG | 0.648493 | 7_3:+56520037 | None:intergenic |
| CGCCTACGACACGACCATCA+GGG | 0.655146 | 7_3:+56521111 | None:intergenic |
| CAACTTATCATATGGCACCA+AGG | 0.682724 | 7_3:-56522403 | Msa1111010:CDS |
| GAAAGGGTTGATGTAATGAG+TGG | 0.687494 | 7_3:-56520422 | Msa1111010:CDS |
| GCGTTGACGGTAATGATATG+CGG | 0.692545 | 7_3:+56521739 | None:intergenic |
| GATAGGATGCATATAGCTCG+CGG | 0.699011 | 7_3:+56521555 | None:intergenic |
| TTCATGCCTACCGACAACCA+AGG | 0.742195 | 7_3:-56521176 | Msa1111010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTCATTAAAAAATTTTAA+TGG | - | chr7_3:56520640-56520659 | Msa1111010:intron | 10.0% |
| !! | TTATATAAAAGTTTATGTAT+AGG | + | chr7_3:56523029-56523048 | None:intergenic | 10.0% |
| !!! | GTTATGAATTATTTTAAGTA+AGG | - | chr7_3:56520473-56520492 | Msa1111010:CDS | 15.0% |
| !!! | TTTCAGAATATATTTTTTTG+AGG | - | chr7_3:56520560-56520579 | Msa1111010:intron | 15.0% |
| !!! | TTCAGAATATATTTTTTTGA+GGG | - | chr7_3:56520561-56520580 | Msa1111010:intron | 15.0% |
| !! | TTATGATTTAAAAAACAACT+TGG | + | chr7_3:56520609-56520628 | None:intergenic | 15.0% |
| !! | ATAAATTAATCTTCTAACAA+AGG | + | chr7_3:56520685-56520704 | None:intergenic | 15.0% |
| !! | TTATCTTTAGTATCATAATA+AGG | + | chr7_3:56522634-56522653 | None:intergenic | 15.0% |
| !!! | ATTATATTCTGTATTTTATC+AGG | - | chr7_3:56523085-56523104 | Msa1111010:intron | 15.0% |
| !! | CAAATTAAGTACAAAAAAAG+TGG | + | chr7_3:56520143-56520162 | None:intergenic | 20.0% |
| !! | AAGAAGGTTTAATACATTTA+TGG | - | chr7_3:56520922-56520941 | Msa1111010:intron | 20.0% |
| !!! | TTTCCAAGTACATTTTTAAT+TGG | - | chr7_3:56521114-56521133 | Msa1111010:CDS | 20.0% |
| !! | AAACCAATTAAAAATGTACT+TGG | + | chr7_3:56521120-56521139 | None:intergenic | 20.0% |
| !! | GATGAAAATTCATTAGAAAA+AGG | + | chr7_3:56521467-56521486 | None:intergenic | 20.0% |
| !!! | TTTTCTAATGAATTTTCATC+CGG | - | chr7_3:56521467-56521486 | Msa1111010:intron | 20.0% |
| !! | CTAATATTTGTCGATAAAAA+AGG | + | chr7_3:56521595-56521614 | None:intergenic | 20.0% |
| !! | ATCTAATGTTAATTCTTCTT+TGG | - | chr7_3:56521991-56522010 | Msa1111010:intron | 20.0% |
| !! | TCTAATGTTAATTCTTCTTT+GGG | - | chr7_3:56521992-56522011 | Msa1111010:intron | 20.0% |
| !! | ACATGAATGTTGAATTTATA+CGG | + | chr7_3:56522348-56522367 | None:intergenic | 20.0% |
| !! | TCAATGAAAATGAAAAACTA+TGG | + | chr7_3:56522376-56522395 | None:intergenic | 20.0% |
| !! | TTAGTATCATAATAAGGATA+GGG | + | chr7_3:56522628-56522647 | None:intergenic | 20.0% |
| !! | TTTAGTATCATAATAAGGAT+AGG | + | chr7_3:56522629-56522648 | None:intergenic | 20.0% |
| !! | GATTATCATCTTTAATTATC+AGG | + | chr7_3:56523395-56523414 | None:intergenic | 20.0% |
| !! | TTATTTGAACATTGTTGTTG+TGG | - | chr7_3:56519942-56519961 | Msa1111010:three_prime_UTR | 25.0% |
| ! | AGCTTCTTGAATTGAAAAAT+GGG | + | chr7_3:56520027-56520046 | None:intergenic | 25.0% |
| ! | AAGCTTCTTGAATTGAAAAA+TGG | + | chr7_3:56520028-56520047 | None:intergenic | 25.0% |
| !!! | TTTTTCAATTCAAGAAGCTT+TGG | - | chr7_3:56520028-56520047 | Msa1111010:three_prime_UTR | 25.0% |
| ! | GAAGTTGAAAAAAATTCTGT+TGG | + | chr7_3:56520067-56520086 | None:intergenic | 25.0% |
| !!! | AACTTCTGAAATTTGTAAGT+TGG | - | chr7_3:56520081-56520100 | Msa1111010:three_prime_UTR | 25.0% |
| !!! | TAAGTTGGTTTTGAATTTCT+GGG | - | chr7_3:56520096-56520115 | Msa1111010:three_prime_UTR | 25.0% |
| ! | AGTACAAAAAAAGTGGAAAA+AGG | + | chr7_3:56520136-56520155 | None:intergenic | 25.0% |
| !!! | TTTCTGTCTTTTGAAAGTTT+TGG | - | chr7_3:56520360-56520379 | Msa1111010:CDS | 25.0% |
| ! | TTCTGTTTATAGTAAAGCTT+TGG | - | chr7_3:56520413-56520432 | Msa1111010:CDS | 25.0% |
| !! | CTGAACATTCATAAAAGTTT+TGG | + | chr7_3:56520514-56520533 | None:intergenic | 25.0% |
| !!! | TTTGGTTTGATTGTATTAAG+AGG | - | chr7_3:56521156-56521175 | Msa1111010:CDS | 25.0% |
| !! | TTGGTTTGATTGTATTAAGA+GGG | - | chr7_3:56521157-56521176 | Msa1111010:CDS | 25.0% |
| ! | AGGAACAATTAAGAAGAAAA+GGG | - | chr7_3:56521364-56521383 | Msa1111010:intron | 25.0% |
| !! | TTTCTAATGAATTTTCATCC+GGG | - | chr7_3:56521468-56521487 | Msa1111010:intron | 25.0% |
| ! | TATCAAATCAAAATACCTAG+AGG | + | chr7_3:56521551-56521570 | None:intergenic | 25.0% |
| !!! | TAGTAGTTAAGTTAGTTTTC+AGG | - | chr7_3:56521620-56521639 | Msa1111010:intron | 25.0% |
| !!! | AGTAGTTAAGTTAGTTTTCA+GGG | - | chr7_3:56521621-56521640 | Msa1111010:intron | 25.0% |
| !!! | ACATAATTTTGCTGTATACT+AGG | + | chr7_3:56521734-56521753 | None:intergenic | 25.0% |
| ! | ATGTCTATAAAAAGCAAAGT+TGG | + | chr7_3:56521813-56521832 | None:intergenic | 25.0% |
| ! | CATGAATGTTGAATTTATAC+GGG | + | chr7_3:56522347-56522366 | None:intergenic | 25.0% |
| ! | GTATAAATTCAACATTCATG+TGG | - | chr7_3:56522347-56522366 | Msa1111010:CDS | 25.0% |
| ! | AGTTTAAACAAGTTTGACAT+AGG | - | chr7_3:56522762-56522781 | Msa1111010:intron | 25.0% |
| !! | TATTTGAAACTTACTACTAC+TGG | - | chr7_3:56522818-56522837 | Msa1111010:intron | 25.0% |
| ! | CAGAATATAATGCATTTGTT+AGG | + | chr7_3:56523076-56523095 | None:intergenic | 25.0% |
| !! | ATATTCTGTATTTTATCAGG+TGG | - | chr7_3:56523088-56523107 | Msa1111010:intron | 25.0% |
| !!! | ATTTTGGCTTCTTTATTTTC+TGG | + | chr7_3:56523148-56523167 | None:intergenic | 25.0% |
| TTGAAAAAAATTCTGTTGGC+TGG | + | chr7_3:56520063-56520082 | None:intergenic | 30.0% | |
| !!! | GTAAGTTGGTTTTGAATTTC+TGG | - | chr7_3:56520095-56520114 | Msa1111010:three_prime_UTR | 30.0% |
| ! | TGAACTAGTTAAGTTGTAGA+AGG | - | chr7_3:56520184-56520203 | Msa1111010:three_prime_UTR | 30.0% |
| !! | GAATATCCAGTGTTTGATTT+TGG | - | chr7_3:56520270-56520289 | Msa1111010:exon | 30.0% |
| CTGAAACACAAAACAACTAA+AGG | + | chr7_3:56520339-56520358 | None:intergenic | 30.0% | |
| !! | TTTACACTGTTTTGAGCTTA+AGG | - | chr7_3:56520451-56520470 | Msa1111010:CDS | 30.0% |
| TACACACACAAACAATAACA+AGG | + | chr7_3:56520740-56520759 | None:intergenic | 30.0% | |
| ! | TTAAGTGAAAAGCACATGAA+AGG | + | chr7_3:56520878-56520897 | None:intergenic | 30.0% |
| TTCTTGAACATGCTAAAAAG+TGG | + | chr7_3:56520907-56520926 | None:intergenic | 30.0% | |
| !! | ACTTTTTAGCATGTTCAAGA+AGG | - | chr7_3:56520906-56520925 | Msa1111010:intron | 30.0% |
| AAATGTACTTGGAAAGCAAA+TGG | + | chr7_3:56521109-56521128 | None:intergenic | 30.0% | |
| ! | TTTTGTCATCATGCAGATTT+TGG | - | chr7_3:56521138-56521157 | Msa1111010:CDS | 30.0% |
| GGAATAGTTTGATATTTGCA+TGG | - | chr7_3:56521178-56521197 | Msa1111010:CDS | 30.0% | |
| ATAGTTTGATATTTGCATGG+AGG | - | chr7_3:56521181-56521200 | Msa1111010:CDS | 30.0% | |
| TAGTTTGATATTTGCATGGA+GGG | - | chr7_3:56521182-56521201 | Msa1111010:CDS | 30.0% | |
| GAGGAACAATTAAGAAGAAA+AGG | - | chr7_3:56521363-56521382 | Msa1111010:intron | 30.0% | |
| GGAACAATTAAGAAGAAAAG+GGG | - | chr7_3:56521365-56521384 | Msa1111010:intron | 30.0% | |
| !!! | CTCAGAAAACGTTTTAAGAA+GGG | + | chr7_3:56521659-56521678 | None:intergenic | 30.0% |
| !!! | ACTCAGAAAACGTTTTAAGA+AGG | + | chr7_3:56521660-56521679 | None:intergenic | 30.0% |
| GCTTAATTTAAACATCAACG+TGG | - | chr7_3:56521837-56521856 | Msa1111010:intron | 30.0% | |
| ! | ACTATTGTTGTTACTTCTGA+AGG | - | chr7_3:56521871-56521890 | Msa1111010:intron | 30.0% |
| !!! | CTTTACTCTTTTGTTGTTTC+AGG | - | chr7_3:56522042-56522061 | Msa1111010:intron | 30.0% |
| AATCTTCAATGTGTAGTATC+CGG | - | chr7_3:56522724-56522743 | Msa1111010:intron | 30.0% | |
| !! | AACTTTAAAGCAAATTGCAC+CGG | + | chr7_3:56522746-56522765 | None:intergenic | 30.0% |
| ACATAGGATTTATCCACTTT+GGG | - | chr7_3:56522778-56522797 | Msa1111010:intron | 30.0% | |
| TCAAATAAATCGATCCAAAC+AGG | + | chr7_3:56522805-56522824 | None:intergenic | 30.0% | |
| GAATAGTTGAAAACAGCTTA+TGG | + | chr7_3:56522899-56522918 | None:intergenic | 30.0% | |
| !!! | ATAAGTTGTTTTAGCAATCC+TGG | + | chr7_3:56522933-56522952 | None:intergenic | 30.0% |
| !!! | TCTTTATTTTCTGGTCTTGT+TGG | + | chr7_3:56523139-56523158 | None:intergenic | 30.0% |
| ATCTATGGTCTAATTACCTT+AGG | - | chr7_3:56523519-56523538 | Msa1111010:intron | 30.0% | |
| AATGTGCAAGTATTATGAGT+AGG | - | chr7_3:56523647-56523666 | Msa1111010:five_prime_UTR | 30.0% | |
| GTATTATGAGTAGGCTAATT+TGG | - | chr7_3:56523656-56523675 | Msa1111010:five_prime_UTR | 30.0% | |
| GACATACCAAAATCAAACAC+TGG | + | chr7_3:56520279-56520298 | None:intergenic | 35.0% | |
| !! | TTGAAAGTTTTGGCAAATGC+TGG | - | chr7_3:56520370-56520389 | Msa1111010:CDS | 35.0% |
| AGTTTGATATTTGCATGGAG+GGG | - | chr7_3:56521183-56521202 | Msa1111010:CDS | 35.0% | |
| AGCTCCATCAACTTATCATA+TGG | - | chr7_3:56521247-56521266 | Msa1111010:intron | 35.0% | |
| TTCAGGAACAGTTACATGTT+GGG | + | chr7_3:56521294-56521313 | None:intergenic | 35.0% | |
| ATTCAGGAACAGTTACATGT+TGG | + | chr7_3:56521295-56521314 | None:intergenic | 35.0% | |
| TTCAAGCAGTCGAAAAAAAC+TGG | - | chr7_3:56521518-56521537 | Msa1111010:CDS | 35.0% | |
| TGCTGTATACTAGGAATCAT+CGG | + | chr7_3:56521725-56521744 | None:intergenic | 35.0% | |
| GTTTGTTTAAACCATGTCAG+CGG | + | chr7_3:56521758-56521777 | None:intergenic | 35.0% | |
| ! | TGTTACTTCTGAAGGTGATT+CGG | - | chr7_3:56521879-56521898 | Msa1111010:intron | 35.0% |
| AATGATATGCGGCATAAAGT+TGG | + | chr7_3:56521911-56521930 | None:intergenic | 35.0% | |
| GTTTCAGGACATTACAATGA+AGG | - | chr7_3:56522057-56522076 | Msa1111010:intron | 35.0% | |
| ! | GTTATATCCTTTTCGCAACA+AGG | - | chr7_3:56522079-56522098 | Msa1111010:intron | 35.0% |
| CAAACTCTGTCTCACAAAAT+AGG | - | chr7_3:56522242-56522261 | Msa1111010:CDS | 35.0% | |
| AACTTAGAGCAACATTCATG+TGG | - | chr7_3:56522296-56522315 | Msa1111010:CDS | 35.0% | |
| !! | AAACTATCATTTTTCCCCCT+AGG | - | chr7_3:56522427-56522446 | Msa1111010:CDS | 35.0% |
| !! | AACTATCATTTTTCCCCCTA+GGG | - | chr7_3:56522428-56522447 | Msa1111010:CDS | 35.0% |
| ! | TTTGAGATACTTTCACTGTC+TGG | - | chr7_3:56522455-56522474 | Msa1111010:CDS | 35.0% |
| TGAGAAATATTTACCTGCAC+GGG | + | chr7_3:56522605-56522624 | None:intergenic | 35.0% | |
| GTGAGAAATATTTACCTGCA+CGG | + | chr7_3:56522606-56522625 | None:intergenic | 35.0% | |
| !!! | CCATGTGCACTTATTTTTGT+CGG | - | chr7_3:56522654-56522673 | Msa1111010:intron | 35.0% |
| !!! | TGCACTTATTTTTGTCGGTA+GGG | - | chr7_3:56522659-56522678 | Msa1111010:intron | 35.0% |
| GACATAGGATTTATCCACTT+TGG | - | chr7_3:56522777-56522796 | Msa1111010:intron | 35.0% | |
| CATAGGATTTATCCACTTTG+GGG | - | chr7_3:56522779-56522798 | Msa1111010:intron | 35.0% | |
| TTTCGTAAATTCTCCCAAAC+AGG | + | chr7_3:56522860-56522879 | None:intergenic | 35.0% | |
| ! | GTATTTTATCAGGTGGTTGT+TGG | - | chr7_3:56523095-56523114 | Msa1111010:intron | 35.0% |
| ! | GGTGATGCATAATCAGATTT+TGG | + | chr7_3:56523164-56523183 | None:intergenic | 35.0% |
| ! | AGGTTTGAGTTTAATGTTCC+TGG | + | chr7_3:56523278-56523297 | None:intergenic | 35.0% |
| ATGAATGTAGTCAGCAACAT+TGG | + | chr7_3:56523438-56523457 | None:intergenic | 35.0% | |
| AACAATCTACATGACAACAC+TGG | + | chr7_3:56523488-56523507 | None:intergenic | 35.0% | |
| TAGTCAACTACTTCATCCTA+AGG | + | chr7_3:56523538-56523557 | None:intergenic | 35.0% | |
| CATGATTAAGTCCTCTAGTA+AGG | - | chr7_3:56523610-56523629 | Msa1111010:five_prime_UTR | 35.0% | |
| ATTAAGTCCTCTAGTAAGGT+AGG | - | chr7_3:56523614-56523633 | Msa1111010:five_prime_UTR | 35.0% | |
| GGAAAAAGGTAAGAAACAGC+TGG | + | chr7_3:56520122-56520141 | None:intergenic | 40.0% | |
| AACACTGGAGTAACAGTGAT+AGG | - | chr7_3:56521218-56521237 | Msa1111010:intron | 40.0% | |
| ! | GGTGCCATATGATAAGTTGA+TGG | + | chr7_3:56521254-56521273 | None:intergenic | 40.0% |
| CAACTTATCATATGGCACCA+AGG | - | chr7_3:56521255-56521274 | Msa1111010:intron | 40.0% | |
| CATGTAACTGTTCCTGAATC+AGG | - | chr7_3:56521296-56521315 | Msa1111010:intron | 40.0% | |
| TGTTCCTGAATCAGGAAATG+TGG | - | chr7_3:56521304-56521323 | Msa1111010:intron | 40.0% | |
| !!! | GAAAACGTTTTAAGAAGGGC+CGG | + | chr7_3:56521655-56521674 | None:intergenic | 40.0% |
| ! | AAAATTATGTGCCGCTGACA+TGG | - | chr7_3:56521744-56521763 | Msa1111010:CDS | 40.0% |
| ATATGCATCCTATCTGCTAG+TGG | - | chr7_3:56522112-56522131 | Msa1111010:intron | 40.0% | |
| AAGAATGAGCATCACCTCAT+AGG | + | chr7_3:56522191-56522210 | None:intergenic | 40.0% | |
| AGTATCTCAAAACGACCCTA+GGG | + | chr7_3:56522446-56522465 | None:intergenic | 40.0% | |
| AAGTATCTCAAAACGACCCT+AGG | + | chr7_3:56522447-56522466 | None:intergenic | 40.0% | |
| CCGACAAAAATAAGTGCACA+TGG | + | chr7_3:56522657-56522676 | None:intergenic | 40.0% | |
| !!! | GTGCACTTATTTTTGTCGGT+AGG | - | chr7_3:56522658-56522677 | Msa1111010:intron | 40.0% |
| ! | TTTTGTCGGTAGGGTTTCAA+TGG | - | chr7_3:56522668-56522687 | Msa1111010:intron | 40.0% |
| TTTGTCGGTAGGGTTTCAAT+GGG | - | chr7_3:56522669-56522688 | Msa1111010:intron | 40.0% | |
| TAAGTACTTGTGAGCCTGTT+TGG | - | chr7_3:56522843-56522862 | Msa1111010:intron | 40.0% | |
| AAGTACTTGTGAGCCTGTTT+GGG | - | chr7_3:56522844-56522863 | Msa1111010:intron | 40.0% | |
| !! | TTCTGGTCTTGTTGGTTACT+TGG | + | chr7_3:56523131-56523150 | None:intergenic | 40.0% |
| CGAATACACTGCAATAGGTT+CGG | + | chr7_3:56523195-56523214 | None:intergenic | 40.0% | |
| CGAACCTATTGCAGTGTATT+CGG | - | chr7_3:56523193-56523212 | Msa1111010:intron | 40.0% | |
| ACCTTCAACCAATGGTGAAA+GGG | - | chr7_3:56523220-56523239 | Msa1111010:intron | 40.0% | |
| TACATCAACCCTTTCACCAT+TGG | + | chr7_3:56523231-56523250 | None:intergenic | 40.0% | |
| !! | GAAAGGGTTGATGTAATGAG+TGG | - | chr7_3:56523236-56523255 | Msa1111010:intron | 40.0% |
| ! | GCATGTTAACCCAGTTTTCT+CGG | + | chr7_3:56523322-56523341 | None:intergenic | 40.0% |
| AATGTAGTCAGCAACATTGG+AGG | + | chr7_3:56523435-56523454 | None:intergenic | 40.0% | |
| TGTTTCGAACGTGCTATCTA+TGG | - | chr7_3:56523504-56523523 | Msa1111010:intron | 40.0% | |
| ! | TGCGTGAGTGTTGTAAATCC+CGG | - | chr7_3:56521051-56521070 | Msa1111010:intron | 45.0% |
| AGAAGTCGAACTCAGTAACC+CGG | + | chr7_3:56521073-56521092 | None:intergenic | 45.0% | |
| GGAACAGTTACATGTTGGGT+TGG | + | chr7_3:56521290-56521309 | None:intergenic | 45.0% | |
| AGAGCCACATTTCCTGATTC+AGG | + | chr7_3:56521311-56521330 | None:intergenic | 45.0% | |
| GAATCAGGAAATGTGGCTCT+TGG | - | chr7_3:56521311-56521330 | Msa1111010:intron | 45.0% | |
| AGAAGAAAAGGGGTAGACCA+AGG | - | chr7_3:56521375-56521394 | Msa1111010:intron | 45.0% | |
| AGGGGTAGACCAAGGAAATA+TGG | - | chr7_3:56521383-56521402 | Msa1111010:intron | 45.0% | |
| GGGGTAGACCAAGGAAATAT+GGG | - | chr7_3:56521384-56521403 | Msa1111010:intron | 45.0% | |
| AAAGGAGCTGAAGACGAGAT+TGG | + | chr7_3:56521449-56521468 | None:intergenic | 45.0% | |
| ! | TGAATTTTCATCCGGGAAGC+AGG | - | chr7_3:56521475-56521494 | Msa1111010:intron | 45.0% |
| ! | GAATTTTCATCCGGGAAGCA+GGG | - | chr7_3:56521476-56521495 | Msa1111010:intron | 45.0% |
| ! | AATTTTCATCCGGGAAGCAG+GGG | - | chr7_3:56521477-56521496 | Msa1111010:intron | 45.0% |
| AAAACTGGAGCTGATCCTCT+AGG | - | chr7_3:56521533-56521552 | Msa1111010:CDS | 45.0% | |
| !! | AGTTTTCAGGGTTTGAACGC+CGG | - | chr7_3:56521633-56521652 | Msa1111010:intron | 45.0% |
| !! | TAGCTCGGTTGGTGAACTAA+GGG | + | chr7_3:56521683-56521702 | None:intergenic | 45.0% |
| !! | ATAGCTCGGTTGGTGAACTA+AGG | + | chr7_3:56521684-56521703 | None:intergenic | 45.0% |
| !! | ACTTCTGAAGGTGATTCGGT+CGG | - | chr7_3:56521883-56521902 | Msa1111010:intron | 45.0% |
| ! | GCGTTGACGGTAATGATATG+CGG | + | chr7_3:56521922-56521941 | None:intergenic | 45.0% |
| CATATCATTACCGTCAACGC+AGG | - | chr7_3:56521922-56521941 | Msa1111010:intron | 45.0% | |
| GATAGGATGCATATAGCTCG+CGG | + | chr7_3:56522106-56522125 | None:intergenic | 45.0% | |
| AAATCACGCCACTAGCAGAT+AGG | + | chr7_3:56522123-56522142 | None:intergenic | 45.0% | |
| AAAGTTCCGCCAGAAGAATC+AGG | + | chr7_3:56522166-56522185 | None:intergenic | 45.0% | |
| TATCTCAAAACGACCCTAGG+GGG | + | chr7_3:56522444-56522463 | None:intergenic | 45.0% | |
| GTATCTCAAAACGACCCTAG+GGG | + | chr7_3:56522445-56522464 | None:intergenic | 45.0% | |
| GCTTCTTGTTCCTTGGTTGT+CGG | + | chr7_3:56522495-56522514 | None:intergenic | 45.0% | |
| ACAACCAAGGAACAAGAAGC+CGG | - | chr7_3:56522495-56522514 | Msa1111010:five_prime_UTR | 45.0% | |
| AAACACTCATTCCACCAGAC+CGG | + | chr7_3:56522517-56522536 | None:intergenic | 45.0% | |
| GTTTCTTTGTCAAGCCCTGA+TGG | - | chr7_3:56522533-56522552 | Msa1111010:intron | 45.0% | |
| AATATTTACCTGCACGGGAG+TGG | + | chr7_3:56522600-56522619 | None:intergenic | 45.0% | |
| TTGTCGGTAGGGTTTCAATG+GGG | - | chr7_3:56522670-56522689 | Msa1111010:intron | 45.0% | |
| TCAATGGGGGATGATTTCGT+TGG | - | chr7_3:56522684-56522703 | Msa1111010:intron | 45.0% | |
| ! | ACTATTCCTGTTAGCTCTCC+AGG | - | chr7_3:56522912-56522931 | Msa1111010:intron | 45.0% |
| ! | GCAATAGGTTCGGTAACAGT+CGG | + | chr7_3:56523185-56523204 | None:intergenic | 45.0% |
| ! | CTTTCACCATTGGTTGAAGG+TGG | + | chr7_3:56523221-56523240 | None:intergenic | 45.0% |
| CACCTTCAACCAATGGTGAA+AGG | - | chr7_3:56523219-56523238 | Msa1111010:intron | 45.0% | |
| ! | ACCCTTTCACCATTGGTTGA+AGG | + | chr7_3:56523224-56523243 | None:intergenic | 45.0% |
| GGACATCTACTGCAAAATCC+AGG | - | chr7_3:56523257-56523276 | Msa1111010:intron | 45.0% | |
| CTCAAACCTTACTTCTCCCT+CGG | - | chr7_3:56523289-56523308 | Msa1111010:intron | 45.0% | |
| AGCTTTCATTGAGTCTGGCA+TGG | + | chr7_3:56523348-56523367 | None:intergenic | 45.0% | |
| GTTGCAGCTTTCATTGAGTC+TGG | + | chr7_3:56523353-56523372 | None:intergenic | 45.0% | |
| GCATCTACCTACCTTACTAG+AGG | + | chr7_3:56523624-56523643 | None:intergenic | 45.0% | |
| GTGTGTTTAGCGCAACTGGT+TGG | - | chr7_3:56521019-56521038 | Msa1111010:intron | 50.0% | |
| ! | GCGTGAGTGTTGTAAATCCC+GGG | - | chr7_3:56521052-56521071 | Msa1111010:intron | 50.0% |
| GAAGTCGAACTCAGTAACCC+GGG | + | chr7_3:56521072-56521091 | None:intergenic | 50.0% | |
| ATTTGCATGGAGGGGAGAGA+AGG | - | chr7_3:56521191-56521210 | Msa1111010:CDS | 50.0% | |
| GGGAGAGAAGGTAACAACAC+TGG | - | chr7_3:56521203-56521222 | Msa1111010:CDS | 50.0% | |
| TGGTGTATCACCAGTGAGTC+TGG | - | chr7_3:56521331-56521350 | Msa1111010:intron | 50.0% | |
| GGTGTATCACCAGTGAGTCT+GGG | - | chr7_3:56521332-56521351 | Msa1111010:intron | 50.0% | |
| ATCACCAGTGAGTCTGGGAA+TGG | - | chr7_3:56521337-56521356 | Msa1111010:intron | 50.0% | |
| CCAAGGAAATATGGGCCAGA+CGG | - | chr7_3:56521392-56521411 | Msa1111010:intron | 50.0% | |
| CAAGGAAATATGGGCCAGAC+GGG | - | chr7_3:56521393-56521412 | Msa1111010:intron | 50.0% | |
| GCTGAAGACGAGATTGGCAA+TGG | + | chr7_3:56521443-56521462 | None:intergenic | 50.0% | |
| TGCTTGAACTCCATCCCCTT+CGG | + | chr7_3:56521506-56521525 | None:intergenic | 50.0% | |
| CTTCGTCAGCCTGATTCTTC+TGG | - | chr7_3:56522154-56522173 | Msa1111010:CDS | 50.0% | |
| TGGCGGAACTTTGACCTATG+AGG | - | chr7_3:56522174-56522193 | Msa1111010:CDS | 50.0% | |
| TTCATGCCTACCGACAACCA+AGG | - | chr7_3:56522482-56522501 | Msa1111010:exon | 50.0% | |
| CTTGTTCCTTGGTTGTCGGT+AGG | + | chr7_3:56522491-56522510 | None:intergenic | 50.0% | |
| TGTCGGTAGGGTTTCAATGG+GGG | - | chr7_3:56522671-56522690 | Msa1111010:intron | 50.0% | |
| !! | TATCCACTTTGGGGCCTGTT+TGG | - | chr7_3:56522788-56522807 | Msa1111010:intron | 50.0% |
| AGCAATCCTGGAGAGCTAAC+AGG | + | chr7_3:56522921-56522940 | None:intergenic | 50.0% | |
| ! | GGTGCCGAATACACTGCAAT+AGG | + | chr7_3:56523200-56523219 | None:intergenic | 50.0% |
| GAAATGCCGAGGGAGAAGTA+AGG | + | chr7_3:56523298-56523317 | None:intergenic | 50.0% | |
| ! | TTTTCTCGGCGAAATGCCGA+GGG | + | chr7_3:56523308-56523327 | None:intergenic | 50.0% |
| GGCATTTCGCCGAGAAAACT+GGG | - | chr7_3:56523310-56523329 | Msa1111010:intron | 50.0% | |
| CCAGTTGCGCTAAACACACG+AGG | + | chr7_3:56521018-56521037 | None:intergenic | 55.0% | |
| CCTCGTGTGTTTAGCGCAAC+TGG | - | chr7_3:56521015-56521034 | Msa1111010:intron | 55.0% | |
| ! | TGGGTTGGAGCTTCACTCCT+TGG | + | chr7_3:56521275-56521294 | None:intergenic | 55.0% |
| CCATCCATTCCCAGACTCAC+TGG | + | chr7_3:56521344-56521363 | None:intergenic | 55.0% | |
| CCAGTGAGTCTGGGAATGGA+TGG | - | chr7_3:56521341-56521360 | Msa1111010:intron | 55.0% | |
| GTGAGTCTGGGAATGGATGG+AGG | - | chr7_3:56521344-56521363 | Msa1111010:intron | 55.0% | |
| CCGTCTGGCCCATATTTCCT+TGG | + | chr7_3:56521395-56521414 | None:intergenic | 55.0% | |
| GAAATATGGGCCAGACGGGT+CGG | - | chr7_3:56521397-56521416 | Msa1111010:intron | 55.0% | |
| ACCAACCGAGCTATCTGCGA+GGG | - | chr7_3:56521690-56521709 | Msa1111010:intron | 55.0% | |
| TCGCGGTCCTTGTTGCGAAA+AGG | + | chr7_3:56522089-56522108 | None:intergenic | 55.0% | |
| CGTCAGCCTGATTCTTCTGG+CGG | - | chr7_3:56522157-56522176 | Msa1111010:CDS | 55.0% | |
| ! | CAGACCGGCTTCTTGTTCCT+TGG | + | chr7_3:56522502-56522521 | None:intergenic | 55.0% |
| CAAGGAACAAGAAGCCGGTC+TGG | - | chr7_3:56522500-56522519 | Msa1111010:five_prime_UTR | 55.0% | |
| AGTGGCGGCTACAAGAAGAC+CGG | + | chr7_3:56522582-56522601 | None:intergenic | 55.0% | |
| ATTTACCTGCACGGGAGTGG+CGG | + | chr7_3:56522597-56522616 | None:intergenic | 55.0% | |
| GATCCAAACAGGCCCCAAAG+TGG | + | chr7_3:56522794-56522813 | None:intergenic | 55.0% | |
| TCGGCACCACCTTCAACCAA+TGG | - | chr7_3:56523212-56523231 | Msa1111010:intron | 55.0% | |
| ! | GTTTTCTCGGCGAAATGCCG+AGG | + | chr7_3:56523309-56523328 | None:intergenic | 55.0% |
| CGGCATTTCGCCGAGAAAAC+TGG | - | chr7_3:56523309-56523328 | Msa1111010:intron | 55.0% | |
| ACAGCAGTAACCGACCCGTC+TGG | + | chr7_3:56521410-56521429 | None:intergenic | 60.0% | |
| AGACGGGTCGGTTACTGCTG+TGG | - | chr7_3:56521409-56521428 | Msa1111010:intron | 60.0% | |
| CTTCGGTTTCCCCTGCTTCC+CGG | + | chr7_3:56521489-56521508 | None:intergenic | 60.0% | |
| GGGAAGCAGGGGAAACCGAA+GGG | - | chr7_3:56521488-56521507 | Msa1111010:CDS | 60.0% | |
| GGAAGCAGGGGAAACCGAAG+GGG | - | chr7_3:56521489-56521508 | Msa1111010:CDS | 60.0% | |
| CACCAACCGAGCTATCTGCG+AGG | - | chr7_3:56521689-56521708 | Msa1111010:intron | 60.0% | |
| CCAACCGAGCTATCTGCGAG+GGG | - | chr7_3:56521691-56521710 | Msa1111010:intron | 60.0% | |
| CATTACCGTCAACGCAGGCG+AGG | - | chr7_3:56521927-56521946 | Msa1111010:intron | 60.0% | |
| GCATACCTCGCCTGCGTTGA+CGG | + | chr7_3:56521935-56521954 | None:intergenic | 60.0% | |
| GGAACAAGAAGCCGGTCTGG+TGG | - | chr7_3:56522503-56522522 | Msa1111010:five_prime_UTR | 60.0% | |
| AGCCCTGATGGTCGTGTCGT+AGG | - | chr7_3:56522545-56522564 | Msa1111010:intron | 60.0% | |
| CGCCTACGACACGACCATCA+GGG | + | chr7_3:56522550-56522569 | None:intergenic | 60.0% | |
| CCTGATGGTCGTGTCGTAGG+CGG | - | chr7_3:56522548-56522567 | Msa1111010:intron | 60.0% | |
| CGGGAAGCAGGGGAAACCGA+AGG | - | chr7_3:56521487-56521506 | Msa1111010:CDS | 65.0% | |
| GCAGGGGAAACCGAAGGGGA+TGG | - | chr7_3:56521493-56521512 | Msa1111010:CDS | 65.0% | |
| CCCCTCGCAGATAGCTCGGT+TGG | + | chr7_3:56521694-56521713 | None:intergenic | 65.0% | |
| ACCGAGCTATCTGCGAGGGG+CGG | - | chr7_3:56521694-56521713 | Msa1111010:intron | 65.0% | |
| ACCGCCCCTCGCAGATAGCT+CGG | + | chr7_3:56521698-56521717 | None:intergenic | 65.0% | |
| CCGCCTACGACACGACCATC+AGG | + | chr7_3:56522551-56522570 | None:intergenic | 65.0% | |
| GATGGTCGTGTCGTAGGCGG+TGG | - | chr7_3:56522551-56522570 | Msa1111010:intron | 65.0% | |
| GTCGTAGGCGGTGGAGTTGC+CGG | - | chr7_3:56522560-56522579 | Msa1111010:intron | 65.0% | |
| TGTAGCCGCCACTCCCGTGC+AGG | - | chr7_3:56522589-56522608 | Msa1111010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 56519903 | 56523777 | 56519903 | ID=Msa1111010;Name=Msa1111010 |
| chr7_3 | mRNA | 56519903 | 56523777 | 56519903 | ID=Msa1111010-mRNA-1;Parent=Msa1111010;Name=Msa1111010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=335|1|1|1|0.66|0.57|7|374|334 |
| chr7_3 | exon | 56519903 | 56520573 | 56519903 | ID=Msa1111010-mRNA-1:exon:11959;Parent=Msa1111010-mRNA-1 |
| chr7_3 | exon | 56521070 | 56521231 | 56521070 | ID=Msa1111010-mRNA-1:exon:11958;Parent=Msa1111010-mRNA-1 |
| chr7_3 | exon | 56521485 | 56521616 | 56521485 | ID=Msa1111010-mRNA-1:exon:11957;Parent=Msa1111010-mRNA-1 |
| chr7_3 | exon | 56521732 | 56521787 | 56521732 | ID=Msa1111010-mRNA-1:exon:11956;Parent=Msa1111010-mRNA-1 |
| chr7_3 | exon | 56522126 | 56522526 | 56522126 | ID=Msa1111010-mRNA-1:exon:11955;Parent=Msa1111010-mRNA-1 |
| chr7_3 | exon | 56523389 | 56523488 | 56523389 | ID=Msa1111010-mRNA-1:exon:11954;Parent=Msa1111010-mRNA-1 |
| chr7_3 | exon | 56523586 | 56523777 | 56523586 | ID=Msa1111010-mRNA-1:exon:11953;Parent=Msa1111010-mRNA-1 |
| chr7_3 | five_prime_UTR | 56523586 | 56523777 | 56523586 | ID=Msa1111010-mRNA-1:five_prime_utr;Parent=Msa1111010-mRNA-1 |
| chr7_3 | five_prime_UTR | 56523389 | 56523488 | 56523389 | ID=Msa1111010-mRNA-1:five_prime_utr;Parent=Msa1111010-mRNA-1 |
| chr7_3 | five_prime_UTR | 56522484 | 56522526 | 56522484 | ID=Msa1111010-mRNA-1:five_prime_utr;Parent=Msa1111010-mRNA-1 |
| chr7_3 | CDS | 56522126 | 56522483 | 56522126 | ID=Msa1111010-mRNA-1:cds;Parent=Msa1111010-mRNA-1 |
| chr7_3 | CDS | 56521732 | 56521787 | 56521732 | ID=Msa1111010-mRNA-1:cds;Parent=Msa1111010-mRNA-1 |
| chr7_3 | CDS | 56521485 | 56521616 | 56521485 | ID=Msa1111010-mRNA-1:cds;Parent=Msa1111010-mRNA-1 |
| chr7_3 | CDS | 56521070 | 56521231 | 56521070 | ID=Msa1111010-mRNA-1:cds;Parent=Msa1111010-mRNA-1 |
| chr7_3 | CDS | 56520277 | 56520573 | 56520277 | ID=Msa1111010-mRNA-1:cds;Parent=Msa1111010-mRNA-1 |
| chr7_3 | three_prime_UTR | 56519903 | 56520276 | 56519903 | ID=Msa1111010-mRNA-1:three_prime_utr;Parent=Msa1111010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
