AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0604750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604750 MtrunA17_Chr4g0033961 92.541 429 15 2 1 412 1 429 0.0 805
Msa0604750 MtrunA17_Chr1g0162441 58.810 437 148 8 2 412 3 433 1.73e-178 504
Msa0604750 MtrunA17_Chr1g0162411 39.340 394 177 12 4 342 5 391 3.03e-75 241
Msa0604750 MtrunA17_Chr1g0208771 26.975 367 189 9 21 385 12 301 1.65e-29 119
Msa0604750 MtrunA17_Chr3g0103151 38.519 135 73 2 6 140 12 136 8.42e-24 97.1
Msa0604750 MtrunA17_Chr7g0233571 40.909 110 63 1 1 110 5 112 4.54e-23 96.7
Msa0604750 MtrunA17_Chr8g0390841 40.741 108 64 0 6 113 39 146 3.23e-22 98.6
Msa0604750 MtrunA17_Chr8g0390841 29.714 175 100 6 224 385 177 341 5.46e-14 73.6
Msa0604750 MtrunA17_Chr7g0233561 41.414 99 58 0 6 104 18 116 6.10e-22 95.9
Msa0604750 MtrunA17_Chr3g0103181 36.364 132 74 2 6 137 12 133 9.12e-22 94.4
Msa0604750 MtrunA17_Chr3g0103191 35.606 132 75 2 6 137 12 133 4.00e-21 92.0
Msa0604750 MtrunA17_Chr1g0162421 58.621 58 24 0 20 77 7 64 4.63e-21 86.3
Msa0604750 MtrunA17_Chr1g0162431 67.925 53 17 0 327 379 5 57 7.41e-21 85.9
Msa0604750 MtrunA17_Chr3g0131891 38.393 112 67 1 6 117 19 128 1.42e-20 92.0
Msa0604750 MtrunA17_Chr3g0131891 34.146 123 61 3 277 379 186 308 1.22e-13 71.6
Msa0604750 MtrunA17_Chr3g0103171 37.607 117 65 1 21 137 5 113 2.50e-20 90.1
Msa0604750 MtrunA17_Chr7g0233541 41.667 96 54 1 22 115 2 97 4.60e-20 90.1
Msa0604750 MtrunA17_Chr5g0419201 34.483 145 94 1 3 146 13 157 5.49e-20 87.4
Msa0604750 MtrunA17_Chr1g0163071 37.500 120 68 2 22 141 2 114 1.36e-19 89.0
Msa0604750 MtrunA17_Chr1g0163071 35.897 117 56 3 283 386 187 297 1.65e-14 73.9
Msa0604750 MtrunA17_Chr3g0077411 36.364 110 70 0 3 112 22 131 3.16e-19 89.7
Msa0604750 MtrunA17_Chr3g0077411 36.893 103 64 1 3 104 259 361 2.49e-17 84.0
Msa0604750 MtrunA17_Chr3g0077461 38.235 102 63 0 3 104 234 335 4.08e-19 89.0
Msa0604750 MtrunA17_Chr3g0077461 36.957 92 58 0 21 112 22 113 4.96e-16 79.7
Msa0604750 MtrunA17_Chr1g0154211 28.173 394 216 16 11 378 27 379 6.73e-19 87.8
Msa0604750 MtrunA17_Chr4g0009491 39.216 102 62 0 3 104 222 323 9.86e-19 87.8
Msa0604750 MtrunA17_Chr4g0009491 35.294 85 55 0 20 104 11 95 9.35e-12 66.6
Msa0604750 MtrunA17_Chr3g0077451 39.785 93 56 0 20 112 10 102 1.74e-18 84.3
Msa0604750 MtrunA17_Chr3g0077451 35.938 128 64 5 267 377 111 237 2.36e-11 63.5
Msa0604750 MtrunA17_Chr7g0233521 42.697 89 49 1 22 110 2 88 1.97e-18 85.1
Msa0604750 MtrunA17_Chr5g0429931 41.667 84 49 0 21 104 10 93 1.26e-17 82.0
Msa0604750 MtrunA17_Chr5g0429931 36.029 136 62 4 263 374 108 242 2.47e-13 69.3
Msa0604750 MtrunA17_Chr3g0077381 38.235 102 63 0 3 104 244 345 2.42e-17 83.6
Msa0604750 MtrunA17_Chr3g0077381 36.559 93 59 0 20 112 34 126 1.80e-14 74.7
Msa0604750 MtrunA17_Chr7g0233531 39.326 89 52 1 22 110 2 88 5.32e-17 80.9
Msa0604750 MtrunA17_Chr1g0154041 39.130 92 55 1 4 95 14 104 3.52e-16 80.5
Msa0604750 MtrunA17_Chr3g0077361 33.981 103 67 1 3 104 37 139 7.85e-16 79.3
Msa0604750 MtrunA17_Chr3g0077361 35.714 126 68 4 264 377 380 504 5.73e-13 70.5
Msa0604750 MtrunA17_Chr3g0077361 37.500 72 45 0 3 74 286 357 2.66e-12 68.6
Msa0604750 MtrunA17_Chr3g0077361 36.735 147 72 8 274 403 157 299 5.60e-11 64.3
Msa0604750 MtrunA17_Chr1g0154191 24.205 409 225 16 9 395 24 369 1.26e-15 77.8
Msa0604750 MtrunA17_Chr6g0467351 37.500 112 67 2 6 116 15 124 7.51e-15 73.6
Msa0604750 MtrunA17_Chr1g0154111 24.390 369 213 8 18 370 38 356 1.69e-14 75.5
Msa0604750 MtrunA17_Chr3g0077421 32.370 173 95 6 223 377 31 199 5.09e-14 70.5
Msa0604750 MtrunA17_Chr3g0077441 32.370 173 95 6 223 377 31 199 5.09e-14 70.5
Msa0604750 MtrunA17_Chr1g0163251 37.624 101 57 2 4 104 7 101 1.61e-13 71.6
Msa0604750 MtrunA17_Chr1g0163181 38.614 101 56 2 4 104 7 101 1.61e-13 72.0
Msa0604750 MtrunA17_Chr1g0163191 37.624 101 57 2 4 104 7 101 2.96e-13 67.4
Msa0604750 MtrunA17_Chr1g0154161 38.889 90 55 0 6 95 30 119 1.01e-12 68.6
Msa0604750 MtrunA17_Chr1g0154101 39.535 86 51 1 10 95 187 271 2.11e-12 68.9
Msa0604750 MtrunA17_Chr1g0154101 37.778 90 56 0 6 95 25 114 1.46e-11 66.6
Msa0604750 MtrunA17_Chr1g0154131 41.026 78 46 0 18 95 194 271 4.36e-12 67.8
Msa0604750 MtrunA17_Chr1g0154131 37.778 90 55 1 6 95 26 114 9.73e-12 66.6
Msa0604750 MtrunA17_Chr3g0077431 35.938 128 64 5 267 377 72 198 7.78e-12 64.3
Msa0604750 MtrunA17_Chr1g0154171 38.889 90 54 1 7 95 22 111 1.39e-11 65.5
Msa0604750 MtrunA17_Chr1g0171611 37.374 99 60 1 6 104 9 105 2.22e-11 64.3
Msa0604750 MtrunA17_Chr1g0154151 40.541 74 44 0 22 95 20 93 3.65e-11 63.9
Msa0604750 MtrunA17_Chr1g0154251 38.462 78 48 0 18 95 38 115 4.00e-11 64.7
Msa0604750 MtrunA17_Chr1g0163231 36.364 99 61 1 6 104 9 105 6.34e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0604750 AT3G18990.1 46.565 393 140 8 1 377 1 339 7.01e-110 327
Msa0604750 AT3G18990.2 46.366 399 141 9 1 380 1 345 6.46e-109 325
Msa0604750 AT1G49480.3 58.385 161 50 3 233 377 65 224 1.62e-56 186
Msa0604750 AT1G49480.1 58.385 161 50 3 233 377 65 224 1.62e-56 186
Msa0604750 AT1G49480.2 58.385 161 50 3 233 377 65 224 1.62e-56 186
Msa0604750 AT4G01580.1 39.806 103 62 0 2 104 26 128 2.75e-21 91.3
Msa0604750 AT3G18960.2 37.864 103 64 0 2 104 26 128 1.78e-20 89.0
Msa0604750 AT3G18960.1 37.864 103 64 0 2 104 26 128 1.80e-20 89.4
Msa0604750 AT1G49475.1 33.803 142 87 3 2 137 27 167 6.18e-18 82.0
Msa0604750 AT3G18960.3 34.524 84 55 0 21 104 8 91 1.47e-13 68.9
Msa0604750 AT2G16210.2 34.314 102 62 4 5 102 18 118 3.60e-11 63.2

Find 124 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATTCATCAAATGCTTTA+AGG 0.135808 4_2:+50386230 Msa0604750:five_prime_UTR
GTCTACCGGATTGGCATTTC+TGG 0.144576 4_2:-50388042 None:intergenic
CAAAGCAACTTTCTCATTTC+CGG 0.157107 4_2:-50385970 None:intergenic
AAAAGGTAGACAACAAATTT+TGG 0.211575 4_2:+50387622 Msa0604750:CDS
AAGAACTTGAATGGCGTTTC+AGG 0.211639 4_2:+50388595 Msa0604750:CDS
ATGCTTTAAGGCTTTGGTTT+TGG 0.247741 4_2:+50386242 Msa0604750:five_prime_UTR
GCACTGCAGAATCTGTTTAA+TGG 0.280689 4_2:+50387972 Msa0604750:CDS
CATCAAATGCTTTAAGGCTT+TGG 0.301227 4_2:+50386236 Msa0604750:five_prime_UTR
CTAAACTTAATAGCATAAAC+TGG 0.308905 4_2:+50387997 Msa0604750:CDS
AGTAATGAAGCGTCTCTCTT+TGG 0.337462 4_2:+50387795 Msa0604750:CDS
TAAACTCGACTACATTAAAC+TGG 0.341096 4_2:-50388091 None:intergenic
TTTCGCTGGAGAACAATTTA+GGG 0.350563 4_2:+50388713 Msa0604750:CDS
TTGCTTTGGAAAATCCAAAC+TGG 0.371344 4_2:+50385985 Msa0604750:five_prime_UTR
CATGTTCAGAAGGAGGTTCC+TGG 0.372328 4_2:-50388291 None:intergenic
TTTCATCTAATTTCTTCAAA+TGG 0.378688 4_2:+50388993 Msa0604750:three_prime_UTR
CGGAAATGAGAAAGTTGCTT+TGG 0.380233 4_2:+50385971 Msa0604750:five_prime_UTR
AGCTAATCACACACAAGAAA+AGG 0.380477 4_2:-50388969 None:intergenic
CAACAAGTATCCAGTACTAA+TGG 0.397395 4_2:-50387682 None:intergenic
GACCTATATCTCTGGTCAAC+TGG 0.399942 4_2:-50388067 None:intergenic
TAGCTCTACCACCTCTATAA+AGG 0.406566 4_2:-50388666 None:intergenic
TGAGTCACCAACTCGTTATT+AGG 0.410373 4_2:+50386039 Msa0604750:five_prime_UTR
GCAGAACCAACATGTGAAAC+TGG 0.412096 4_2:+50388846 Msa0604750:CDS
CATTAGTACTGGATACTTGT+TGG 0.415047 4_2:+50387683 Msa0604750:CDS
AGCCAGTTGACCAGAGATAT+AGG 0.419207 4_2:+50388065 Msa0604750:CDS
GTTTCCGTTTGGAGTTTGTT+TGG 0.420376 4_2:-50385919 None:intergenic
TGGTTCTGCTGCAACGGCTG+TGG 0.421147 4_2:-50388832 None:intergenic
TTGCAAAACAAAGCAGTTAC+CGG 0.427667 4_2:+50387906 Msa0604750:CDS
TGAAGATTCTGTTGAAATCA+TGG 0.428155 4_2:+50387851 Msa0604750:CDS
ATGAGGTAGAAATGCGCAAT+AGG 0.433073 4_2:+50388317 Msa0604750:CDS
GAAACAACAAAAGTGTGGTT+TGG 0.438389 4_2:+50385937 Msa0604750:five_prime_UTR
ACACACAAGAAAAGGGATAC+TGG 0.440613 4_2:-50388961 None:intergenic
TATTTCCTCATAAAATCATC+TGG 0.445116 4_2:-50387531 None:intergenic
GCTGTAAAGAAGAGGAAATC+AGG 0.445746 4_2:+50388173 Msa0604750:CDS
GGTTCTGCTGCAACGGCTGT+GGG 0.447673 4_2:-50388831 None:intergenic
CAAAACTATTCCATTAGTAC+TGG 0.448754 4_2:+50387672 Msa0604750:CDS
CACTCTTCAAGCTAAGCAAC+TGG 0.450976 4_2:+50386327 Msa0604750:CDS
AACCATCTAATCCTTTCTGT+CGG 0.454042 4_2:+50388422 Msa0604750:CDS
GTGGCGTGTAGGAATGAAAA+AGG 0.456416 4_2:+50387605 Msa0604750:CDS
ACCATCTAATCCTTTCTGTC+GGG 0.457399 4_2:+50388423 Msa0604750:CDS
AGCTTTCATCTTTCAATCAA+AGG 0.458663 4_2:+50386207 Msa0604750:five_prime_UTR
ATCAAACTTCAAATCTCTGA+TGG 0.460034 4_2:+50388622 Msa0604750:CDS
ACCCGACAGAAAGGATTAGA+TGG 0.462119 4_2:-50388424 None:intergenic
CGCTTCATTACTTCTTTGTG+CGG 0.462139 4_2:-50387784 None:intergenic
GCTTTCATCTTTCAATCAAA+GGG 0.464016 4_2:+50386208 Msa0604750:five_prime_UTR
CCAGTTCGCTGCCTTTATAG+AGG 0.464193 4_2:+50388655 Msa0604750:CDS
CCTCTATAAAGGCAGCGAAC+TGG 0.468295 4_2:-50388655 None:intergenic
CAAATTCATTCCAGCCATCA+AGG 0.469351 4_2:-50387647 None:intergenic
TTAAACAGATTCTGCAGTGC+TGG 0.470577 4_2:-50387969 None:intergenic
GAGTTTGTTTGGAACATAGT+TGG 0.479789 4_2:-50385908 None:intergenic
TGGTAGAGCTAAGTTAAGCC+AGG 0.481112 4_2:+50388678 Msa0604750:CDS
TTGTTGGTATTCAAATATGA+AGG 0.488579 4_2:+50387699 Msa0604750:CDS
ACATGTTGGTTCTGCTGCAA+CGG 0.490310 4_2:-50388838 None:intergenic
TCCTTCCAGAAATGCCAATC+CGG 0.491012 4_2:+50388037 Msa0604750:CDS
ACACGCCACGCACTGCCATC+AGG 0.495919 4_2:-50387591 None:intergenic
TTTGCAATAGGCTAGGAGTA+AGG 0.503132 4_2:-50387890 None:intergenic
AGAACAAGCTTATGAAATGA+AGG 0.504843 4_2:-50386298 None:intergenic
CGTTTACCAGTTTCACATGT+TGG 0.506129 4_2:-50388852 None:intergenic
TTTGCAGAGAAGAACTTGAA+TGG 0.506953 4_2:+50388586 Msa0604750:CDS
GCGCGCGGCTGCTGATGAAA+AGG 0.510535 4_2:+50388139 Msa0604750:CDS
AGCATAAACTGGGGTGAAGG+TGG 0.512276 4_2:+50388008 Msa0604750:CDS
AAGTCATCATCTTGAAATGT+TGG 0.517522 4_2:-50389036 None:intergenic
GCTAATCACACACAAGAAAA+GGG 0.517703 4_2:-50388968 None:intergenic
CAACTGGCTGTCTACCGGAT+TGG 0.517983 4_2:-50388051 None:intergenic
CGATGTGTGTGTGTTTGAGC+TGG 0.519261 4_2:+50388741 Msa0604750:CDS
CTGGTCAACTGGCTGTCTAC+CGG 0.520814 4_2:-50388056 None:intergenic
GAAGCGAGGTGATGCTGAAA+CGG 0.522835 4_2:-50388877 None:intergenic
ACCTCATCTTCATGTTCAGA+AGG 0.527271 4_2:-50388301 None:intergenic
TCTAGCTTATATCAGAAACT+TGG 0.527883 4_2:+50389122 Msa0604750:three_prime_UTR
TGTTCCAAACAAACTCCAAA+CGG 0.528885 4_2:+50385915 Msa0604750:five_prime_UTR
AAACTGGAGACCTATATCTC+TGG 0.534467 4_2:-50388075 None:intergenic
TGGTGGTGATATTTCTCCAA+TGG 0.535973 4_2:+50387554 Msa0604750:CDS
TTTCGTATTACAGAGGATGA+AGG 0.541809 4_2:+50388799 Msa0604750:CDS
TGCTTAGCTTGAAGAGTGGA+GGG 0.543127 4_2:-50386322 None:intergenic
AAAGTTGAGCTACGACCTAT+CGG 0.547743 4_2:-50388930 None:intergenic
AACTCGTTATTAGGCCAAGT+TGG 0.549255 4_2:+50386048 Msa0604750:five_prime_UTR
AACGAAGGAAGTAGTGCTGC+AGG 0.550293 4_2:+50388768 Msa0604750:CDS
CTGGAGAACAATTTAGGGGA+AGG 0.550360 4_2:+50388718 Msa0604750:CDS
GATGGCAGTGCGTGGCGTGT+AGG 0.551984 4_2:+50387594 Msa0604750:CDS
AGTAAGTTTATCAGCTGAGC+CGG 0.556292 4_2:-50387925 None:intergenic
AGGCTAGGAGTAAGGTTCGT+AGG 0.558211 4_2:-50387882 None:intergenic
AATAGCATAAACTGGGGTGA+AGG 0.559689 4_2:+50388005 Msa0604750:CDS
GCGAAAACTCATACCACCCC+TGG 0.559736 4_2:-50388696 None:intergenic
TTCTTCTCTGCAAAGCAAGA+TGG 0.561035 4_2:-50388577 None:intergenic
TGCAACGGCTGTGGGCTCAA+CGG 0.564438 4_2:-50388823 None:intergenic
TGCTTTGGAAAATCCAAACT+GGG 0.565994 4_2:+50385986 Msa0604750:five_prime_UTR
GGTAGAGCTAAGTTAAGCCA+GGG 0.566840 4_2:+50388679 Msa0604750:CDS
CGTAGGACAACCCGACAGAA+AGG 0.567258 4_2:-50388433 None:intergenic
TTGCTTAGCTTGAAGAGTGG+AGG 0.568784 4_2:-50386323 None:intergenic
AGAAAACTGCTGTAAAGAAG+AGG 0.569808 4_2:+50388165 Msa0604750:CDS
TGATAGTTAATCTCAGAAGT+AGG 0.570254 4_2:-50387756 None:intergenic
AGATTCTGCAGTGCTGGAGG+CGG 0.572818 4_2:-50387963 None:intergenic
AGCTTATGAAATGAAGGAGA+AGG 0.572983 4_2:-50386292 None:intergenic
GCTTCATTACTTCTTTGTGC+GGG 0.576787 4_2:-50387783 None:intergenic
GACAGCTGAAGAAAGAGAGA+AGG 0.582130 4_2:+50388375 Msa0604750:CDS
ACCGGATTGGCATTTCTGGA+AGG 0.582778 4_2:-50388038 None:intergenic
TAAACTTAATAGCATAAACT+GGG 0.585444 4_2:+50387998 Msa0604750:CDS
TAACGAGTTGGTGACTCAGT+GGG 0.589671 4_2:-50386034 None:intergenic
GTTCGCTGCCTTTATAGAGG+TGG 0.593487 4_2:+50388658 Msa0604750:CDS
TCAAACTTCAAATCTCTGAT+GGG 0.594893 4_2:+50388623 Msa0604750:CDS
TCCTTCTGAACATGAAGATG+AGG 0.595862 4_2:+50388300 Msa0604750:CDS
GGAACTTTGAGAGTAACCAT+TGG 0.597271 4_2:-50387570 None:intergenic
AACTTGGCCTAATAACGAGT+TGG 0.599053 4_2:-50386046 None:intergenic
CAGTTGCTTAGCTTGAAGAG+TGG 0.602007 4_2:-50386326 None:intergenic
TCATCTTCATGTTCAGAAGG+AGG 0.602398 4_2:-50388298 None:intergenic
AAATTAACTTTGTTTCCGAT+AGG 0.605865 4_2:+50388915 Msa0604750:exon
AACAGATTCTGCAGTGCTGG+AGG 0.607091 4_2:-50387966 None:intergenic
GCATAAACTGGGGTGAAGGT+GGG 0.609417 4_2:+50388009 Msa0604750:CDS
GTTTGAGCTGGTTGCAACGA+AGG 0.613778 4_2:+50388753 Msa0604750:CDS
TTCGCTGGAGAACAATTTAG+GGG 0.616292 4_2:+50388714 Msa0604750:CDS
GGAGGCGGACGAGACTTGCA+AGG 0.616432 4_2:-50387948 None:intergenic
TACTGTATTTCGTATTACAG+AGG 0.616530 4_2:+50388792 Msa0604750:CDS
TAATCAGTTTAGTTGAAGCG+AGG 0.620183 4_2:-50388891 None:intergenic
TTTATGAAAGTGCATCCGCA+AGG 0.624536 4_2:+50388341 Msa0604750:CDS
AAGTTCCTGATGGCAGTGCG+TGG 0.628489 4_2:+50387586 Msa0604750:CDS
GTTACTCTCAAAGTTCCTGA+TGG 0.635054 4_2:+50387576 Msa0604750:CDS
AAATCTCTGATGGGAGACAG+TGG 0.637373 4_2:+50388632 Msa0604750:CDS
ATAACGAGTTGGTGACTCAG+TGG 0.662512 4_2:-50386035 None:intergenic
TACAAACCAAGTTAAAACAG+CGG 0.671161 4_2:-50389085 None:intergenic
GAGCTAAGTTAAGCCAGGGG+TGG 0.681213 4_2:+50388683 Msa0604750:CDS
AAAGAATATTGAGAGAGTGA+TGG 0.682434 4_2:+50386147 Msa0604750:five_prime_UTR
AAACGGAAACAACAAAAGTG+TGG 0.691612 4_2:+50385932 Msa0604750:five_prime_UTR
TGAAGAGTTGAAGTTGCGCG+CGG 0.715479 4_2:+50388124 Msa0604750:CDS
GTAGAGCTAAGTTAAGCCAG+GGG 0.733227 4_2:+50388680 Msa0604750:CDS
AAACTTAATAGCATAAACTG+GGG 0.737966 4_2:+50387999 Msa0604750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTGTAG+TGG + chr4_2:50386436-50386455 Msa0604750:intron 10.0%
!!! TATTTATTTATTTTTGTAGT+GGG + chr4_2:50386437-50386456 Msa0604750:intron 10.0%
!!! TTTAAATTTTTAGATTAGAT+GGG + chr4_2:50386572-50386591 Msa0604750:intron 10.0%
!!! AAAAAAGTCATAAATATTTT+TGG + chr4_2:50386603-50386622 Msa0604750:intron 10.0%
!!! AAAAAGTCATAAATATTTTT+GGG + chr4_2:50386604-50386623 Msa0604750:intron 10.0%
!!! GATTGTTTTTTTTTTTTAAA+TGG + chr4_2:50386994-50387013 Msa0604750:intron 10.0%
!!! ATCTTTTGTGTATTATTTTT+TGG + chr4_2:50386366-50386385 Msa0604750:intron 15.0%
!! AAAATTTAAACTTGATGAAA+GGG - chr4_2:50386562-50386581 None:intergenic 15.0%
!! AAAAATTTAAACTTGATGAA+AGG - chr4_2:50386563-50386582 None:intergenic 15.0%
!!! GTTTAAATTTTTAGATTAGA+TGG + chr4_2:50386571-50386590 Msa0604750:intron 15.0%
!!! AAAAGTCATAAATATTTTTG+GGG + chr4_2:50386605-50386624 Msa0604750:intron 15.0%
!! AATATAATTATAGTGTACTT+TGG + chr4_2:50386863-50386882 Msa0604750:intron 15.0%
!! GAATAAAAAAAAATTTGTGT+TGG - chr4_2:50388504-50388523 None:intergenic 15.0%
!!! ACACAAAAGATTGAATTTTT+AGG - chr4_2:50386357-50386376 None:intergenic 20.0%
!!! TTTAAAGTCAAATCATAAAG+TGG + chr4_2:50386654-50386673 Msa0604750:intron 20.0%
!! TTAAAGTCAAATCATAAAGT+GGG + chr4_2:50386655-50386674 Msa0604750:intron 20.0%
!!! AAATCCTTTTTTTTTTTGTG+TGG - chr4_2:50386761-50386780 None:intergenic 20.0%
!!! AACTTGAAATTAGAGTTTTT+TGG + chr4_2:50386786-50386805 Msa0604750:intron 20.0%
!! TTGAAATAGTTTAAATCAGA+AGG + chr4_2:50386961-50386980 Msa0604750:intron 20.0%
!! AAAAAAAAAACAATCGAACT+CGG - chr4_2:50386989-50387008 None:intergenic 20.0%
!! TAAACTTAATAGCATAAACT+GGG + chr4_2:50387998-50388017 Msa0604750:CDS 20.0%
!! CTTAGTTATTGTTTATAACT+CGG + chr4_2:50388197-50388216 Msa0604750:intron 20.0%
!! TTTCATCTAATTTCTTCAAA+TGG + chr4_2:50388993-50389012 Msa0604750:three_prime_UTR 20.0%
! ATAAAAAAAAGACACCAACT+TGG - chr4_2:50386065-50386084 None:intergenic 25.0%
!!! CAATGGTTTTTACTTTTTGA+AGG - chr4_2:50386091-50386110 None:intergenic 25.0%
!!! GCTTTTTTGACAAAAAACAA+TGG - chr4_2:50386108-50386127 None:intergenic 25.0%
!! TTCTTAGATGAATTTTTGCA+TGG + chr4_2:50386404-50386423 Msa0604750:intron 25.0%
!!! AATTTTGATAGAGTGAAGAA+AGG + chr4_2:50386468-50386487 Msa0604750:intron 25.0%
!!! ATTTTGATAGAGTGAAGAAA+GGG + chr4_2:50386469-50386488 Msa0604750:intron 25.0%
!!! AAAGGGTTTGATAATTTTTC+TGG + chr4_2:50386486-50386505 Msa0604750:intron 25.0%
!!! AAGGGTTTGATAATTTTTCT+GGG + chr4_2:50386487-50386506 Msa0604750:intron 25.0%
! TAAAGTCAAATCATAAAGTG+GGG + chr4_2:50386656-50386675 Msa0604750:intron 25.0%
! TTCTCCACACAAAAAAAAAA+AGG + chr4_2:50386754-50386773 Msa0604750:intron 25.0%
! AAAAAAAAACAATCGAACTC+GGG - chr4_2:50386988-50387007 None:intergenic 25.0%
!!! TTTTGTGGGTTTGTTTTTAT+CGG - chr4_2:50387123-50387142 None:intergenic 25.0%
!! AAAAGATATAGGTTTAGTTC+AGG - chr4_2:50387267-50387286 None:intergenic 25.0%
! GATAGATTCGAAAAAGATAT+AGG - chr4_2:50387278-50387297 None:intergenic 25.0%
!!! TTGCACTTTTTGAAATGAAA+TGG + chr4_2:50387438-50387457 Msa0604750:intron 25.0%
!!! TGGTGTTTTTTATACTATCA+TGG + chr4_2:50387458-50387477 Msa0604750:intron 25.0%
! CATGGCAATTTACAAATATT+TGG + chr4_2:50387476-50387495 Msa0604750:intron 25.0%
! TGCAATTCACAAATCATATT+AGG - chr4_2:50387504-50387523 None:intergenic 25.0%
! TATTTCCTCATAAAATCATC+TGG - chr4_2:50387534-50387553 None:intergenic 25.0%
!! GATGATTTTATGAGGAAATA+TGG + chr4_2:50387534-50387553 Msa0604750:CDS 25.0%
!! AAAAGGTAGACAACAAATTT+TGG + chr4_2:50387622-50387641 Msa0604750:CDS 25.0%
! TTGTTGGTATTCAAATATGA+AGG + chr4_2:50387699-50387718 Msa0604750:CDS 25.0%
!! TCTTACTATTTTCGAAGAAA+TGG + chr4_2:50387824-50387843 Msa0604750:CDS 25.0%
! CTAAACTTAATAGCATAAAC+TGG + chr4_2:50387997-50388016 Msa0604750:CDS 25.0%
! AAACTTAATAGCATAAACTG+GGG + chr4_2:50387999-50388018 Msa0604750:CDS 25.0%
!! AAATTAACTTTGTTTCCGAT+AGG + chr4_2:50388915-50388934 Msa0604750:exon 25.0%
!!! GTGGTTTGGTTTTTTAAAAC+CGG + chr4_2:50385951-50385970 Msa0604750:five_prime_UTR 30.0%
AAAGAATATTGAGAGAGTGA+TGG + chr4_2:50386147-50386166 Msa0604750:five_prime_UTR 30.0%
AGCTTTCATCTTTCAATCAA+AGG + chr4_2:50386207-50386226 Msa0604750:five_prime_UTR 30.0%
GCTTTCATCTTTCAATCAAA+GGG + chr4_2:50386208-50386227 Msa0604750:five_prime_UTR 30.0%
GTCATTCATCAAATGCTTTA+AGG + chr4_2:50386230-50386249 Msa0604750:five_prime_UTR 30.0%
AGAACAAGCTTATGAAATGA+AGG - chr4_2:50386301-50386320 None:intergenic 30.0%
!!! CATAAATATTTTTGGGGTCA+AGG + chr4_2:50386611-50386630 Msa0604750:intron 30.0%
AATATATGTGTGTTGCATGT+TGG - chr4_2:50386705-50386724 None:intergenic 30.0%
! TTTTACTGGTGGAATTTTTG+AGG + chr4_2:50386824-50386843 Msa0604750:intron 30.0%
!!! TTTGTGGGTTTGTTTTTATC+GGG - chr4_2:50387122-50387141 None:intergenic 30.0%
AGCATATGTTAGTAAATTGC+TGG - chr4_2:50387182-50387201 None:intergenic 30.0%
! AATTGTTTCTCACTGTAACT+CGG - chr4_2:50387224-50387243 None:intergenic 30.0%
! ATATGATTTGTGAATTGCAG+AGG + chr4_2:50387505-50387524 Msa0604750:intron 30.0%
! GATTTTATGAGGAAATATGG+TGG + chr4_2:50387537-50387556 Msa0604750:CDS 30.0%
!!! AACAAATTTTGGTTCCTTGA+TGG + chr4_2:50387633-50387652 Msa0604750:CDS 30.0%
CAAAACTATTCCATTAGTAC+TGG + chr4_2:50387672-50387691 Msa0604750:CDS 30.0%
TGATAGTTAATCTCAGAAGT+AGG - chr4_2:50387759-50387778 None:intergenic 30.0%
TGAAGATTCTGTTGAAATCA+TGG + chr4_2:50387851-50387870 Msa0604750:CDS 30.0%
!!! TAACTGCTTTGTTTTGCAAT+AGG - chr4_2:50387905-50387924 None:intergenic 30.0%
TAAACTCGACTACATTAAAC+TGG - chr4_2:50388094-50388113 None:intergenic 30.0%
! AAATGATTTTGCTGCATTGA+TGG - chr4_2:50388401-50388420 None:intergenic 30.0%
ATCAAACTTCAAATCTCTGA+TGG + chr4_2:50388622-50388641 Msa0604750:CDS 30.0%
TCAAACTTCAAATCTCTGAT+GGG + chr4_2:50388623-50388642 Msa0604750:CDS 30.0%
TACTGTATTTCGTATTACAG+AGG + chr4_2:50388792-50388811 Msa0604750:CDS 30.0%
AAGTCATCATCTTGAAATGT+TGG - chr4_2:50389039-50389058 None:intergenic 30.0%
TACAAACCAAGTTAAAACAG+CGG - chr4_2:50389088-50389107 None:intergenic 30.0%
! TCTAGCTTATATCAGAAACT+TGG + chr4_2:50389122-50389141 Msa0604750:three_prime_UTR 30.0%
TGTTCCAAACAAACTCCAAA+CGG + chr4_2:50385915-50385934 Msa0604750:five_prime_UTR 35.0%
!!! ACACTTTTGTTGTTTCCGTT+TGG - chr4_2:50385933-50385952 None:intergenic 35.0%
AAACGGAAACAACAAAAGTG+TGG + chr4_2:50385932-50385951 Msa0604750:five_prime_UTR 35.0%
! GAAACAACAAAAGTGTGGTT+TGG + chr4_2:50385937-50385956 Msa0604750:five_prime_UTR 35.0%
CAAAGCAACTTTCTCATTTC+CGG - chr4_2:50385973-50385992 None:intergenic 35.0%
!! TTGCTTTGGAAAATCCAAAC+TGG + chr4_2:50385985-50386004 Msa0604750:five_prime_UTR 35.0%
!! TGCTTTGGAAAATCCAAACT+GGG + chr4_2:50385986-50386005 Msa0604750:five_prime_UTR 35.0%
!! CATCAAATGCTTTAAGGCTT+TGG + chr4_2:50386236-50386255 Msa0604750:five_prime_UTR 35.0%
!!! ATGCTTTAAGGCTTTGGTTT+TGG + chr4_2:50386242-50386261 Msa0604750:five_prime_UTR 35.0%
AGCTTATGAAATGAAGGAGA+AGG - chr4_2:50386295-50386314 None:intergenic 35.0%
!! ATTTTTAGATTAGATGGGCG+TGG + chr4_2:50386577-50386596 Msa0604750:intron 35.0%
!!! AGAGTTTTTTGGATGACTGA+TGG + chr4_2:50386797-50386816 Msa0604750:intron 35.0%
!!! GAGTTTTTTGGATGACTGAT+GGG + chr4_2:50386798-50386817 Msa0604750:intron 35.0%
GAAAGGGAAACAATACAACA+AGG + chr4_2:50387070-50387089 Msa0604750:intron 35.0%
AACCCACAAAAACCCAAATA+AGG + chr4_2:50387132-50387151 Msa0604750:intron 35.0%
!!! TGCCTTATTTGGGTTTTTGT+GGG - chr4_2:50387137-50387156 None:intergenic 35.0%
!!! ATGCCTTATTTGGGTTTTTG+TGG - chr4_2:50387138-50387157 None:intergenic 35.0%
!! TACCAATCGATGCCTTATTT+GGG - chr4_2:50387147-50387166 None:intergenic 35.0%
! TTACCAATCGATGCCTTATT+TGG - chr4_2:50387148-50387167 None:intergenic 35.0%
!! AAGTTCCGTGATTCTGAAAT+TGG + chr4_2:50387368-50387387 Msa0604750:intron 35.0%
TTGTACTAAGTTCGTCGAAT+CGG - chr4_2:50387411-50387430 None:intergenic 35.0%
CAACAAGTATCCAGTACTAA+TGG - chr4_2:50387685-50387704 None:intergenic 35.0%
! CATTAGTACTGGATACTTGT+TGG + chr4_2:50387683-50387702 Msa0604750:CDS 35.0%
TTGCAAAACAAAGCAGTTAC+CGG + chr4_2:50387906-50387925 Msa0604750:CDS 35.0%
AGAAAACTGCTGTAAAGAAG+AGG + chr4_2:50388165-50388184 Msa0604750:CDS 35.0%
AACCATCTAATCCTTTCTGT+CGG + chr4_2:50388422-50388441 Msa0604750:CDS 35.0%
TATATAAATAGGAGGGTCGT+AGG - chr4_2:50388453-50388472 None:intergenic 35.0%
TACGACCCTCCTATTTATAT+AGG + chr4_2:50388452-50388471 Msa0604750:intron 35.0%
ACGACCCTCCTATTTATATA+GGG + chr4_2:50388453-50388472 Msa0604750:intron 35.0%
TATGCACCCCCTATATAAAT+AGG - chr4_2:50388464-50388483 None:intergenic 35.0%
! TTTATATAGGGGGTGCATAA+TGG + chr4_2:50388465-50388484 Msa0604750:intron 35.0%
TTTGCAGAGAAGAACTTGAA+TGG + chr4_2:50388586-50388605 Msa0604750:CDS 35.0%
! TTTTCGCTGGAGAACAATTT+AGG + chr4_2:50388712-50388731 Msa0604750:CDS 35.0%
TTTCGCTGGAGAACAATTTA+GGG + chr4_2:50388713-50388732 Msa0604750:CDS 35.0%
TTTCGTATTACAGAGGATGA+AGG + chr4_2:50388799-50388818 Msa0604750:CDS 35.0%
TAATCAGTTTAGTTGAAGCG+AGG - chr4_2:50388894-50388913 None:intergenic 35.0%
GCTAATCACACACAAGAAAA+GGG - chr4_2:50388971-50388990 None:intergenic 35.0%
AGCTAATCACACACAAGAAA+AGG - chr4_2:50388972-50388991 None:intergenic 35.0%
! GTTTCCGTTTGGAGTTTGTT+TGG - chr4_2:50385922-50385941 None:intergenic 40.0%
CGGAAATGAGAAAGTTGCTT+TGG + chr4_2:50385971-50385990 Msa0604750:five_prime_UTR 40.0%
! AAACAGAGGTTTTCCCAGTT+TGG - chr4_2:50386002-50386021 None:intergenic 40.0%
TGAGTCACCAACTCGTTATT+AGG + chr4_2:50386039-50386058 Msa0604750:five_prime_UTR 40.0%
AACTTGGCCTAATAACGAGT+TGG - chr4_2:50386049-50386068 None:intergenic 40.0%
AACTCGTTATTAGGCCAAGT+TGG + chr4_2:50386048-50386067 Msa0604750:five_prime_UTR 40.0%
ACTTGATGAAAGGGATGACA+AGG - chr4_2:50386553-50386572 None:intergenic 40.0%
TCAAGGTCTCAAGATTGTCA+TGG + chr4_2:50386628-50386647 Msa0604750:intron 40.0%
GTCAAATCATAAAGTGGGGT+TGG + chr4_2:50386660-50386679 Msa0604750:intron 40.0%
GTGTGTTGCATGTTGGAAAT+AGG - chr4_2:50386698-50386717 None:intergenic 40.0%
!!! TGACTGATGGGTTGTTTTAC+TGG + chr4_2:50386810-50386829 Msa0604750:intron 40.0%
TGTGCTAGGTTGTAACATGA+AGG + chr4_2:50386912-50386931 Msa0604750:intron 40.0%
GTTGTAACATGAAGGTAGCT+CGG + chr4_2:50386920-50386939 Msa0604750:intron 40.0%
! GGAGGTGTAACTTATATAGG+CGG - chr4_2:50387098-50387117 None:intergenic 40.0%
!! AACCCAAATAAGGCATCGAT+TGG + chr4_2:50387142-50387161 Msa0604750:intron 40.0%
GAGAAACAATTCCCATGCAT+TGG + chr4_2:50387233-50387252 Msa0604750:intron 40.0%
AAACAATTCCCATGCATTGG+AGG + chr4_2:50387236-50387255 Msa0604750:intron 40.0%
GCTTGAGTGTTTGTGTGTTA+CGG + chr4_2:50387334-50387353 Msa0604750:intron 40.0%
! GGCTTCCAGATGATTTTATG+AGG + chr4_2:50387526-50387545 Msa0604750:CDS 40.0%
! TGGTGGTGATATTTCTCCAA+TGG + chr4_2:50387554-50387573 Msa0604750:CDS 40.0%
! GGAACTTTGAGAGTAACCAT+TGG - chr4_2:50387573-50387592 None:intergenic 40.0%
GTTACTCTCAAAGTTCCTGA+TGG + chr4_2:50387576-50387595 Msa0604750:CDS 40.0%
!!! AATTTTGGTTCCTTGATGGC+TGG + chr4_2:50387637-50387656 Msa0604750:CDS 40.0%
CAAATTCATTCCAGCCATCA+AGG - chr4_2:50387650-50387669 None:intergenic 40.0%
GCTTCATTACTTCTTTGTGC+GGG - chr4_2:50387786-50387805 None:intergenic 40.0%
CGCTTCATTACTTCTTTGTG+CGG - chr4_2:50387787-50387806 None:intergenic 40.0%
! AGTAATGAAGCGTCTCTCTT+TGG + chr4_2:50387795-50387814 Msa0604750:CDS 40.0%
TTTGCAATAGGCTAGGAGTA+AGG - chr4_2:50387893-50387912 None:intergenic 40.0%
!!! GCTTTGTTTTGCAATAGGCT+AGG - chr4_2:50387900-50387919 None:intergenic 40.0%
AGTAAGTTTATCAGCTGAGC+CGG - chr4_2:50387928-50387947 None:intergenic 40.0%
TTAAACAGATTCTGCAGTGC+TGG - chr4_2:50387972-50387991 None:intergenic 40.0%
GCACTGCAGAATCTGTTTAA+TGG + chr4_2:50387972-50387991 Msa0604750:CDS 40.0%
AATAGCATAAACTGGGGTGA+AGG + chr4_2:50388005-50388024 Msa0604750:CDS 40.0%
AAACTGGAGACCTATATCTC+TGG - chr4_2:50388078-50388097 None:intergenic 40.0%
GCTGTAAAGAAGAGGAAATC+AGG + chr4_2:50388173-50388192 Msa0604750:CDS 40.0%
!!! TTTTGATAGTGCAGATGTCC+AGG + chr4_2:50388273-50388292 Msa0604750:intron 40.0%
TCATCTTCATGTTCAGAAGG+AGG - chr4_2:50388301-50388320 None:intergenic 40.0%
TCCTTCTGAACATGAAGATG+AGG + chr4_2:50388300-50388319 Msa0604750:CDS 40.0%
ACCTCATCTTCATGTTCAGA+AGG - chr4_2:50388304-50388323 None:intergenic 40.0%
ATGAGGTAGAAATGCGCAAT+AGG + chr4_2:50388317-50388336 Msa0604750:CDS 40.0%
! TTTATGAAAGTGCATCCGCA+AGG + chr4_2:50388341-50388360 Msa0604750:CDS 40.0%
ACCATCTAATCCTTTCTGTC+GGG + chr4_2:50388423-50388442 Msa0604750:CDS 40.0%
CGACCCTCCTATTTATATAG+GGG + chr4_2:50388454-50388473 Msa0604750:intron 40.0%
GACCCTCCTATTTATATAGG+GGG + chr4_2:50388455-50388474 Msa0604750:intron 40.0%
CACCCCCTATATAAATAGGA+GGG - chr4_2:50388460-50388479 None:intergenic 40.0%
CAAAGCAAGATGGTAGATAC+TGG - chr4_2:50388570-50388589 None:intergenic 40.0%
TTCTTCTCTGCAAAGCAAGA+TGG - chr4_2:50388580-50388599 None:intergenic 40.0%
AAGAACTTGAATGGCGTTTC+AGG + chr4_2:50388595-50388614 Msa0604750:CDS 40.0%
! TAGCTCTACCACCTCTATAA+AGG - chr4_2:50388669-50388688 None:intergenic 40.0%
TTCGCTGGAGAACAATTTAG+GGG + chr4_2:50388714-50388733 Msa0604750:CDS 40.0%
CGTTTACCAGTTTCACATGT+TGG - chr4_2:50388855-50388874 None:intergenic 40.0%
AAAGTTGAGCTACGACCTAT+CGG - chr4_2:50388933-50388952 None:intergenic 40.0%
ACACACAAGAAAAGGGATAC+TGG - chr4_2:50388964-50388983 None:intergenic 40.0%
GGTGAGTAGCACAAAAACAG+AGG - chr4_2:50386016-50386035 None:intergenic 45.0%
!! TAACGAGTTGGTGACTCAGT+GGG - chr4_2:50386037-50386056 None:intergenic 45.0%
!! ATAACGAGTTGGTGACTCAG+TGG - chr4_2:50386038-50386057 None:intergenic 45.0%
! TGCTTAGCTTGAAGAGTGGA+GGG - chr4_2:50386325-50386344 None:intergenic 45.0%
! TTGCTTAGCTTGAAGAGTGG+AGG - chr4_2:50386326-50386345 None:intergenic 45.0%
! CAGTTGCTTAGCTTGAAGAG+TGG - chr4_2:50386329-50386348 None:intergenic 45.0%
CACTCTTCAAGCTAAGCAAC+TGG + chr4_2:50386327-50386346 Msa0604750:CDS 45.0%
! GGTTTGAGGTTGTGGATGAT+TGG - chr4_2:50386532-50386551 None:intergenic 45.0%
! GATGACAAGGTTTGAGGTTG+TGG - chr4_2:50386540-50386559 None:intergenic 45.0%
GAAAGGGATGACAAGGTTTG+AGG - chr4_2:50386546-50386565 None:intergenic 45.0%
!!! CTGATGGGTTGTTTTACTGG+TGG + chr4_2:50386813-50386832 Msa0604750:intron 45.0%
CTCTGTATGAAGCATGTGCT+AGG + chr4_2:50386898-50386917 Msa0604750:intron 45.0%
TAACATGAAGGTAGCTCGGT+TGG + chr4_2:50386924-50386943 Msa0604750:intron 45.0%
!! TAGCTCGGTTGGTGAGTTAA+GGG + chr4_2:50386935-50386954 Msa0604750:intron 45.0%
CAAGACGCACAAAAAACTCG+CGG + chr4_2:50387043-50387062 Msa0604750:intron 45.0%
AAAAAACTCGCGGCAAGGAA+AGG + chr4_2:50387053-50387072 Msa0604750:intron 45.0%
AAAAACTCGCGGCAAGGAAA+GGG + chr4_2:50387054-50387073 Msa0604750:intron 45.0%
! GGCGGAGGTGTAACTTATAT+AGG - chr4_2:50387101-50387120 None:intergenic 45.0%
!!! GTGGGTTTGTTTTTATCGGG+CGG - chr4_2:50387119-50387138 None:intergenic 45.0%
GGCAGCCAATTTCAGAATCA+CGG - chr4_2:50387376-50387395 None:intergenic 45.0%
!! TCGAATCGGTTTGGCAAGAT+TGG - chr4_2:50387397-50387416 None:intergenic 45.0%
CTAAGTTCGTCGAATCGGTT+TGG - chr4_2:50387406-50387425 None:intergenic 45.0%
GTGGCGTGTAGGAATGAAAA+AGG + chr4_2:50387605-50387624 Msa0604750:CDS 45.0%
TCCTTCCAGAAATGCCAATC+CGG + chr4_2:50388037-50388056 Msa0604750:CDS 45.0%
AGCCAGTTGACCAGAGATAT+AGG + chr4_2:50388065-50388084 Msa0604750:CDS 45.0%
GACCTATATCTCTGGTCAAC+TGG - chr4_2:50388070-50388089 None:intergenic 45.0%
! TGTCGCAGTTCTTTTCCTTG+CGG - chr4_2:50388359-50388378 None:intergenic 45.0%
GACAGCTGAAGAAAGAGAGA+AGG + chr4_2:50388375-50388394 Msa0604750:CDS 45.0%
ACCCGACAGAAAGGATTAGA+TGG - chr4_2:50388427-50388446 None:intergenic 45.0%
GCACCCCCTATATAAATAGG+AGG - chr4_2:50388461-50388480 None:intergenic 45.0%
AAATCTCTGATGGGAGACAG+TGG + chr4_2:50388632-50388651 Msa0604750:CDS 45.0%
TGGTAGAGCTAAGTTAAGCC+AGG + chr4_2:50388678-50388697 Msa0604750:CDS 45.0%
GGTAGAGCTAAGTTAAGCCA+GGG + chr4_2:50388679-50388698 Msa0604750:CDS 45.0%
GTAGAGCTAAGTTAAGCCAG+GGG + chr4_2:50388680-50388699 Msa0604750:CDS 45.0%
CTGGAGAACAATTTAGGGGA+AGG + chr4_2:50388718-50388737 Msa0604750:CDS 45.0%
!! ACATGTTGGTTCTGCTGCAA+CGG - chr4_2:50388841-50388860 None:intergenic 45.0%
GCAGAACCAACATGTGAAAC+TGG + chr4_2:50388846-50388865 Msa0604750:CDS 45.0%
!!! AGCTTGCCGCTGTTTTAACT+TGG + chr4_2:50389079-50389098 Msa0604750:three_prime_UTR 45.0%
!! GTAGCTCGGTTGGTGAGTTA+AGG + chr4_2:50386934-50386953 Msa0604750:intron 50.0%
!!! GGTTTGTTTTTATCGGGCGG+AGG - chr4_2:50387116-50387135 None:intergenic 50.0%
CAATTCCCATGCATTGGAGG+AGG + chr4_2:50387239-50387258 Msa0604750:intron 50.0%
AGGTTCCTCCTCCAATGCAT+GGG - chr4_2:50387247-50387266 None:intergenic 50.0%
AGGCTAGGAGTAAGGTTCGT+AGG - chr4_2:50387885-50387904 None:intergenic 50.0%
! AACAGATTCTGCAGTGCTGG+AGG - chr4_2:50387969-50387988 None:intergenic 50.0%
AGCATAAACTGGGGTGAAGG+TGG + chr4_2:50388008-50388027 Msa0604750:CDS 50.0%
GCATAAACTGGGGTGAAGGT+GGG + chr4_2:50388009-50388028 Msa0604750:CDS 50.0%
!! ACCGGATTGGCATTTCTGGA+AGG - chr4_2:50388041-50388060 None:intergenic 50.0%
!! GTCTACCGGATTGGCATTTC+TGG - chr4_2:50388045-50388064 None:intergenic 50.0%
TGAAGAGTTGAAGTTGCGCG+CGG + chr4_2:50388124-50388143 Msa0604750:CDS 50.0%
CATGTTCAGAAGGAGGTTCC+TGG - chr4_2:50388294-50388313 None:intergenic 50.0%
CCTCTATAAAGGCAGCGAAC+TGG - chr4_2:50388658-50388677 None:intergenic 50.0%
CCAGTTCGCTGCCTTTATAG+AGG + chr4_2:50388655-50388674 Msa0604750:CDS 50.0%
GTTCGCTGCCTTTATAGAGG+TGG + chr4_2:50388658-50388677 Msa0604750:CDS 50.0%
CGATGTGTGTGTGTTTGAGC+TGG + chr4_2:50388741-50388760 Msa0604750:CDS 50.0%
GTTTGAGCTGGTTGCAACGA+AGG + chr4_2:50388753-50388772 Msa0604750:CDS 50.0%
AACGAAGGAAGTAGTGCTGC+AGG + chr4_2:50388768-50388787 Msa0604750:CDS 50.0%
GAAGCGAGGTGATGCTGAAA+CGG - chr4_2:50388880-50388899 None:intergenic 50.0%
CGCACAAAAAACTCGCGGCA+AGG + chr4_2:50387048-50387067 Msa0604750:intron 55.0%
CAGGTTCCTCCTCCAATGCA+TGG - chr4_2:50387248-50387267 None:intergenic 55.0%
AAGTTCCTGATGGCAGTGCG+TGG + chr4_2:50387586-50387605 Msa0604750:CDS 55.0%
! AGATTCTGCAGTGCTGGAGG+CGG - chr4_2:50387966-50387985 None:intergenic 55.0%
CAACTGGCTGTCTACCGGAT+TGG - chr4_2:50388054-50388073 None:intergenic 55.0%
CTGGTCAACTGGCTGTCTAC+CGG - chr4_2:50388059-50388078 None:intergenic 55.0%
CGTAGGACAACCCGACAGAA+AGG - chr4_2:50388436-50388455 None:intergenic 55.0%
GAGCTAAGTTAAGCCAGGGG+TGG + chr4_2:50388683-50388702 Msa0604750:CDS 55.0%
GCGAAAACTCATACCACCCC+TGG - chr4_2:50388699-50388718 None:intergenic 55.0%
! GGGGTGGTATGAGTTTTCGC+TGG + chr4_2:50388699-50388718 Msa0604750:CDS 55.0%
TGCAACGGCTGTGGGCTCAA+CGG - chr4_2:50388826-50388845 None:intergenic 60.0%
GGTTCTGCTGCAACGGCTGT+GGG - chr4_2:50388834-50388853 None:intergenic 60.0%
! TGGTTCTGCTGCAACGGCTG+TGG - chr4_2:50388835-50388854 None:intergenic 60.0%
ACACGCCACGCACTGCCATC+AGG - chr4_2:50387594-50387613 None:intergenic 65.0%
GATGGCAGTGCGTGGCGTGT+AGG + chr4_2:50387594-50387613 Msa0604750:CDS 65.0%
GGAGGCGGACGAGACTTGCA+AGG - chr4_2:50387951-50387970 None:intergenic 65.0%
GCGCGCGGCTGCTGATGAAA+AGG + chr4_2:50388139-50388158 Msa0604750:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 50385909 50389157 50385909 ID=Msa0604750;Name=Msa0604750
chr4_2 mRNA 50385909 50389157 50385909 ID=Msa0604750-mRNA-1;Parent=Msa0604750;Name=Msa0604750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=380|0.66|0.75|1|1|1|4|236|412
chr4_2 exon 50385909 50386348 50385909 ID=Msa0604750-mRNA-1:exon:11848;Parent=Msa0604750-mRNA-1
chr4_2 exon 50387525 50388194 50387525 ID=Msa0604750-mRNA-1:exon:11849;Parent=Msa0604750-mRNA-1
chr4_2 exon 50388287 50388444 50388287 ID=Msa0604750-mRNA-1:exon:11850;Parent=Msa0604750-mRNA-1
chr4_2 exon 50388571 50389157 50388571 ID=Msa0604750-mRNA-1:exon:11851;Parent=Msa0604750-mRNA-1
chr4_2 five_prime_UTR 50385909 50386288 50385909 ID=Msa0604750-mRNA-1:five_prime_utr;Parent=Msa0604750-mRNA-1
chr4_2 CDS 50386289 50386348 50386289 ID=Msa0604750-mRNA-1:cds;Parent=Msa0604750-mRNA-1
chr4_2 CDS 50387525 50388194 50387525 ID=Msa0604750-mRNA-1:cds;Parent=Msa0604750-mRNA-1
chr4_2 CDS 50388287 50388444 50388287 ID=Msa0604750-mRNA-1:cds;Parent=Msa0604750-mRNA-1
chr4_2 CDS 50388571 50388921 50388571 ID=Msa0604750-mRNA-1:cds;Parent=Msa0604750-mRNA-1
chr4_2 three_prime_UTR 50388922 50389157 50388922 ID=Msa0604750-mRNA-1:three_prime_utr;Parent=Msa0604750-mRNA-1
Gene Sequence

>Msa0604750

ATGCCTTCTCCTTCATTTCATAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAATGGTTACTCTCAAAGTTCCTGATGGCAGTGCGTGGCGTGTAGGAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGATGGCTGGAATGAATTTGTTCAAAACTATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGTATTTCACTGTTAATATTTTTAGTTTGCCTACTTCTGAGATTAACTATCAATCACCCGCACAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGACTCGTCGCCTACGAACCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTACCGGCTCAGCTGATAAACTTACTCCTTGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGCCAATCCGGTAGACAGCCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTCGAGTTTAAAAAGTCTAATGAAGAGTTGAAGTTGCGCGCGGCTGCTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCGACAGCTGAAGAAAGAGAGAAGGCCATCAATGCAGCAAAATCATTTGAACCATCTAATCCTTTCTGTCGGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTATGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACGAAGGAAGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCGTTGCAGCAGAACCAACATGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTCGCTTCAACTAAACTGATTAGAAATTAA
Protein sequence

>Msa0604750

MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPMVTLKVPDGSAWRVGMKKVDNKFWFLDGWNEFVQNYSISTGYLLVFKYEGKSYFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMDSSPTNLTPSLLQNKAVTGSADKLTPCKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNANPVDSQLTRDIGLQFNVVEFKKSNEELKLRAAADEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKSFEPSNPFCRYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWYEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVKLVNVPFQHHLASTKLIRN*