AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299980 MtrunA17_Chr4g0061401 91.628 215 8 1 14 228 14 218 1.26e-90 265
Msa1299980 MtrunA17_Chr5g0419121 59.633 109 41 2 4 109 2 110 1.60e-36 129
Msa1299980 MtrunA17_Chr4g0043151 56.757 111 43 4 1 109 1 108 1.55e-34 122
Msa1299980 MtrunA17_Chr8g0378361 55.789 95 41 1 21 114 27 121 1.73e-31 114
Msa1299980 MtrunA17_Chr4g0043511 39.623 106 63 1 22 126 418 523 6.74e-25 102
Msa1299980 MtrunA17_Chr8g0378371 45.045 111 55 3 1 109 10 116 7.95e-25 94.7
Msa1299980 MtrunA17_Chr8g0378381 41.667 108 61 2 1 107 10 116 2.24e-24 93.6
Msa1299980 MtrunA17_Chr8g0378401 41.121 107 61 2 1 106 10 115 3.36e-23 90.5
Msa1299980 MtrunA17_Chr3g0110371 46.154 104 54 2 24 125 361 464 3.88e-23 97.1
Msa1299980 MtrunA17_Chr5g0434591 47.959 98 49 2 20 115 356 453 7.26e-23 96.3
Msa1299980 MtrunA17_Chr3g0120401 50.000 92 45 1 19 109 152 243 2.19e-22 91.7
Msa1299980 MtrunA17_Chr8g0381081 45.631 103 52 3 24 124 57 157 6.37e-22 89.0
Msa1299980 MtrunA17_Chr4g0034901 45.918 98 50 3 14 108 364 461 1.25e-21 92.4
Msa1299980 MtrunA17_Chr1g0177171 51.724 87 40 2 24 108 406 492 2.79e-21 91.7
Msa1299980 MtrunA17_Chr5g0447651 42.982 114 57 4 1 106 1 114 3.80e-21 85.1
Msa1299980 MtrunA17_Chr1g0154991 44.681 94 51 1 14 106 10 103 3.83e-21 84.7
Msa1299980 MtrunA17_Chr1g0213651 43.820 89 49 1 19 106 271 359 6.79e-21 89.7
Msa1299980 MtrunA17_Chr1g0193131 56.410 78 32 2 24 100 420 496 1.25e-20 90.1
Msa1299980 MtrunA17_Chr8g0378621 48.421 95 47 2 24 116 364 458 2.20e-20 89.0
Msa1299980 MtrunA17_Chr4g0040911 44.248 113 60 3 24 134 37 148 2.77e-20 84.3
Msa1299980 MtrunA17_Chr4g0075031 45.161 93 49 2 24 114 382 474 2.83e-20 89.0
Msa1299980 MtrunA17_Chr3g0121271 47.917 96 48 2 20 113 358 453 7.42e-20 87.4
Msa1299980 MtrunA17_Chr5g0439251 53.165 79 35 2 24 100 382 460 1.13e-19 87.0
Msa1299980 MtrunA17_Chr3g0144531 44.211 95 51 2 14 106 360 454 1.31e-19 86.7
Msa1299980 MtrunA17_Chr5g0401301 49.495 99 42 5 14 106 318 414 1.41e-19 86.3
Msa1299980 MtrunA17_Chr2g0304061 45.000 100 49 3 24 122 158 252 3.88e-19 84.3
Msa1299980 MtrunA17_Chr7g0271411 47.674 86 42 3 24 107 160 244 1.07e-18 82.8
Msa1299980 MtrunA17_Chr1g0161011 44.211 95 51 2 24 116 361 455 1.11e-18 84.3
Msa1299980 MtrunA17_Chr5g0443331 37.984 129 77 3 18 144 102 229 3.45e-18 80.9
Msa1299980 MtrunA17_Chr4g0076131 36.111 108 67 2 1 106 5 112 1.30e-17 75.9
Msa1299980 MtrunA17_Chr4g0076141 46.914 81 39 3 23 100 12 91 1.52e-17 75.1
Msa1299980 MtrunA17_Chr8g0389741 42.353 85 47 2 24 106 368 452 2.82e-17 80.1
Msa1299980 MtrunA17_Chr7g0223961 35.870 92 58 1 14 104 355 446 1.01e-16 78.2
Msa1299980 MtrunA17_Chr6g0487261 38.372 86 50 2 24 106 369 454 5.16e-16 76.3
Msa1299980 MtrunA17_Chr3g0096451 44.318 88 46 3 22 107 110 196 8.03e-16 74.3
Msa1299980 MtrunA17_Chr2g0313891 42.857 84 46 2 24 106 30 112 9.75e-15 68.2
Msa1299980 MtrunA17_Chr8g0339191 37.931 87 52 2 24 108 374 460 1.48e-12 66.2
Msa1299980 MtrunA17_Chr2g0306311 42.708 96 50 4 21 113 396 489 9.07e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299980 AT1G18650.1 63.303 109 38 2 4 111 2 109 6.11e-43 143
Msa1299980 AT1G18650.2 62.963 108 38 2 4 110 2 108 3.73e-42 140
Msa1299980 AT5G08000.2 47.429 175 86 3 6 174 22 196 4.83e-38 132
Msa1299980 AT5G61130.1 51.880 133 53 2 20 141 17 149 4.59e-36 126
Msa1299980 AT5G08000.1 49.682 157 73 3 20 170 17 173 1.90e-35 124
Msa1299980 AT4G13600.1 35.577 208 98 5 21 227 58 230 8.53e-31 114
Msa1299980 AT2G03505.4 51.613 93 42 2 20 109 17 109 3.60e-29 107
Msa1299980 AT2G03505.1 51.613 93 42 2 20 109 17 109 3.60e-29 107
Msa1299980 AT2G03505.2 51.613 93 42 2 20 109 17 109 3.60e-29 107
Msa1299980 AT2G03505.3 51.613 93 42 2 20 109 17 109 6.30e-29 105
Msa1299980 AT1G69295.2 51.613 93 45 0 8 100 1 93 9.77e-28 105
Msa1299980 AT1G69295.1 50.526 95 45 1 6 100 5 97 2.08e-26 102
Msa1299980 AT1G26450.1 45.775 142 72 3 6 146 3 140 6.58e-26 100
Msa1299980 AT5G24318.3 47.727 88 45 1 20 106 229 316 1.90e-24 99.0
Msa1299980 AT5G24318.1 47.727 88 45 1 20 106 368 455 3.43e-24 100
Msa1299980 AT2G30933.1 41.964 112 62 3 16 125 74 184 8.48e-24 95.5
Msa1299980 AT1G79480.1 47.191 89 46 1 19 106 306 394 6.51e-23 95.9
Msa1299980 AT1G79480.2 47.191 89 46 1 19 106 305 393 6.86e-23 95.9
Msa1299980 AT5G24318.2 47.619 84 43 1 20 102 368 451 1.10e-22 95.9
Msa1299980 AT1G13830.1 48.864 88 42 2 22 106 19 106 1.43e-22 91.3
Msa1299980 AT1G13830.2 48.864 88 42 2 22 106 33 120 1.55e-22 91.7
Msa1299980 AT1G11820.2 41.739 115 64 3 24 135 381 495 2.58e-22 95.1
Msa1299980 AT2G01630.1 45.455 110 53 3 24 126 360 469 3.84e-22 94.4
Msa1299980 AT4G05430.1 43.299 97 53 2 24 118 23 119 2.12e-21 87.0
Msa1299980 AT4G05430.3 43.299 97 53 2 24 118 48 144 3.87e-21 87.0
Msa1299980 AT4G34480.3 46.067 89 47 1 20 107 249 337 5.06e-21 90.5
Msa1299980 AT4G34480.1 46.067 89 47 1 20 107 360 448 5.24e-21 91.3
Msa1299980 AT2G16230.1 43.011 93 52 1 24 115 366 458 6.78e-21 90.9
Msa1299980 AT2G30933.2 46.078 102 51 4 2 100 59 159 1.19e-20 85.5
Msa1299980 AT2G30933.3 46.078 102 51 4 2 100 59 159 1.19e-20 85.5
Msa1299980 AT4G26830.2 48.276 87 43 2 24 108 371 457 1.75e-20 89.7
Msa1299980 AT4G26830.1 48.276 87 43 2 24 108 367 453 1.83e-20 89.4
Msa1299980 AT2G05790.1 49.425 87 42 2 24 108 384 470 2.14e-20 89.4
Msa1299980 AT1G66250.1 37.607 117 67 3 24 134 368 484 2.50e-20 89.4
Msa1299980 AT5G35740.1 42.424 99 54 3 11 106 17 115 1.45e-19 81.3
Msa1299980 AT3G58100.1 39.623 106 61 3 24 127 41 145 2.36e-19 82.4
Msa1299980 AT4G09464.1 35.780 109 69 1 1 108 8 116 2.70e-19 80.5
Msa1299980 AT4G09467.1 35.780 109 69 1 1 108 8 116 2.70e-19 80.5
Msa1299980 AT4G09465.1 35.780 109 69 1 1 108 8 116 2.85e-19 80.5
Msa1299980 AT5G67460.1 47.059 85 43 2 24 106 293 377 5.87e-19 84.7
Msa1299980 AT5G55180.1 47.126 87 44 2 24 108 372 458 5.91e-19 85.1
Msa1299980 AT1G09460.1 47.872 94 43 4 24 116 137 225 6.16e-19 84.3
Msa1299980 AT4G09462.1 37.383 107 63 2 6 108 8 114 8.03e-19 79.3
Msa1299980 AT2G01630.3 50.000 80 38 2 24 101 360 439 8.27e-19 84.7
Msa1299980 AT3G58100.2 38.889 108 63 3 24 129 117 223 1.03e-18 82.4
Msa1299980 AT1G29380.3 47.778 90 44 3 23 110 147 235 1.57e-18 82.0
Msa1299980 AT4G05430.2 46.835 79 40 2 24 100 48 126 2.18e-18 78.6
Msa1299980 AT4G09466.1 33.945 109 71 1 1 108 8 116 2.26e-18 78.2
Msa1299980 AT1G29380.1 47.674 86 42 3 23 106 147 231 2.37e-18 82.4
Msa1299980 AT4G09090.1 35.780 109 67 2 3 108 8 116 2.56e-18 78.2
Msa1299980 AT1G11820.3 48.101 79 39 2 24 100 381 459 2.85e-18 83.2
Msa1299980 AT4G29360.2 35.246 122 77 2 24 143 401 522 3.96e-18 83.2
Msa1299980 AT4G29360.1 35.246 122 77 2 24 143 391 512 3.99e-18 83.2
Msa1299980 AT3G55430.1 39.560 91 52 2 19 106 359 449 6.02e-18 82.4
Msa1299980 AT1G29380.4 50.000 80 37 3 23 100 147 225 1.25e-17 79.0
Msa1299980 AT1G29380.2 50.000 80 37 3 23 100 147 225 1.25e-17 79.0
Msa1299980 AT1G66852.1 37.838 111 59 5 3 106 2 109 1.82e-17 75.5
Msa1299980 AT5G67460.2 49.367 79 38 2 24 100 293 371 1.91e-17 80.5
Msa1299980 AT5G55180.2 50.633 79 37 2 24 100 372 450 3.14e-17 80.1
Msa1299980 AT3G13560.4 40.708 113 65 2 21 131 359 471 4.18e-17 80.1
Msa1299980 AT3G13560.1 40.708 113 65 2 21 131 359 471 4.18e-17 80.1
Msa1299980 AT3G13560.2 40.708 113 65 2 21 131 359 471 4.18e-17 80.1
Msa1299980 AT3G13560.5 40.708 113 65 2 21 131 359 471 4.18e-17 80.1
Msa1299980 AT3G13560.3 40.708 113 65 2 21 131 359 471 4.18e-17 80.1
Msa1299980 AT2G39640.1 37.634 93 57 1 20 111 456 548 6.77e-17 79.3
Msa1299980 AT2G39640.1 38.542 96 58 1 13 107 348 443 1.25e-15 75.9
Msa1299980 AT2G04910.2 38.776 98 56 3 12 106 3 99 1.07e-16 73.6
Msa1299980 AT5G63240.1 41.573 89 48 2 24 108 40 128 1.93e-16 73.6
Msa1299980 AT1G66870.1 36.697 109 64 3 3 106 2 110 2.70e-16 72.4
Msa1299980 AT5G63225.1 41.489 94 52 2 16 106 15 108 3.21e-16 72.4
Msa1299980 AT5G63230.1 40.476 84 49 1 24 106 26 109 4.15e-16 72.0
Msa1299980 AT1G66870.2 36.190 105 61 3 8 106 33 137 5.08e-16 72.4
Msa1299980 AT1G66855.1 36.893 103 60 4 6 106 11 110 2.06e-15 70.1
Msa1299980 AT2G04910.1 40.659 91 50 3 13 100 4 93 2.33e-15 70.5
Msa1299980 AT5G63250.1 39.175 97 52 3 19 108 34 130 1.12e-14 68.9
Msa1299980 AT5G56590.1 34.579 107 67 3 24 128 369 474 7.94e-14 70.5
Msa1299980 AT2G29735.1 32.110 109 71 2 1 106 8 116 2.69e-13 64.7
Msa1299980 AT4G16165.1 33.333 111 65 4 3 106 2 110 5.86e-13 63.5
Msa1299980 AT1G78520.1 32.203 118 66 4 1 107 1 115 1.44e-12 62.8
Msa1299980 AT2G43670.1 29.661 118 70 3 1 106 1 117 6.25e-12 61.2
Msa1299980 AT3G23770.1 38.462 104 54 3 15 108 370 473 1.05e-11 64.3
Msa1299980 AT5G53600.1 37.500 72 44 1 35 106 41 111 1.20e-11 60.1
Msa1299980 AT5G53610.1 31.532 111 70 3 1 106 1 110 1.43e-11 60.1
Msa1299980 AT4G14080.1 36.782 87 53 2 24 108 389 475 7.23e-11 61.6
Msa1299980 AT2G42930.1 37.209 86 48 3 18 100 34 116 8.29e-11 58.5

Find 119 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGTGATTGTGGTGTTTA+AGG 0.200616 8_3:-61375127 Msa1299980:three_prime_UTR
CAATGAGCTCTAACGGTGTT+TGG 0.235083 8_3:+61378544 None:intergenic
TTTCTGTCTTTATTATGTTT+TGG 0.239738 8_3:-61375404 Msa1299980:CDS
GTAGCAAAAGCCATGTTGTT+AGG 0.285089 8_3:+61378875 None:intergenic
GTGCTTGTTGACCCTTCTTC+TGG 0.287043 8_3:+61378497 None:intergenic
CCACAAGAACTGGCATAATT+AGG 0.299604 8_3:+61375254 None:intergenic
GGCAGTGGTATGGGGCCTTC+TGG 0.300371 8_3:-61375501 Msa1299980:CDS
GCCATGTTGTTAGGGTTAGA+AGG 0.304097 8_3:+61378884 None:intergenic
TCCCATGCCGGTGCCTGTTC+CGG 0.330442 8_3:+61375677 None:intergenic
GACTGAGGTGTGAGAATAAC+AGG 0.340465 8_3:+61379008 None:intergenic
GGTATGGGGCCTTCTGGAGC+TGG 0.348837 8_3:-61375495 Msa1299980:CDS
CCTAATTATGCCAGTTCTTG+TGG 0.357035 8_3:-61375254 Msa1299980:three_prime_UTR
GCCTGTTCCGGTACCTGTTC+CGG 0.362158 8_3:+61375689 None:intergenic
TGACATATGTAGGTGCTAAT+TGG 0.376958 8_3:-61378675 Msa1299980:intron
ACAGCTCCTGGTGGTGTGTT+AGG 0.379943 8_3:-61375531 Msa1299980:CDS
TGTTAGGCTAGTAATCAGTA+TGG 0.383697 8_3:-61375191 Msa1299980:three_prime_UTR
TTGGACTATGCTTGTGGAGC+TGG 0.394023 8_3:-61378610 Msa1299980:CDS
ATCACAATGCCTCATCAAAT+AGG 0.402738 8_3:+61375141 None:intergenic
AATGAGCTCTAACGGTGTTT+GGG 0.405145 8_3:+61378545 None:intergenic
CTAATTATGCCAGTTCTTGT+GGG 0.405712 8_3:-61375253 Msa1299980:three_prime_UTR
ATTACCAGTGGCGCCGGTGC+TGG 0.406626 8_3:+61375569 None:intergenic
ACCGGAACAGGTACCGGAAC+AGG 0.412489 8_3:-61375690 Msa1299980:CDS
TCCCATGCCGGTGCCCGTGC+TGG 0.412497 8_3:+61375599 None:intergenic
AAAATATAAACATAGATTAG+AGG 0.412614 8_3:+61379034 None:intergenic
CGGTGCCTGTGCCTGTTGAC+GGG 0.412693 8_3:+61375649 None:intergenic
ACCGGCACGGGCACCGGCAC+TGG 0.415269 8_3:-61375630 Msa1299980:CDS
GTGAGGTTGAGTTGAGAGAG+AGG 0.416619 8_3:+61378967 None:intergenic
GGAGGTATAGGCAGTGGTAT+GGG 0.420850 8_3:-61375510 Msa1299980:CDS
ATGGGAACCACCCCGTCAAC+AGG 0.424768 8_3:-61375660 Msa1299980:CDS
CCGGTGCCTGTGCCTGTTGA+CGG 0.427407 8_3:+61375648 None:intergenic
AATTTAAACCTGGCACTTGA+AGG 0.429774 8_3:+61378303 None:intergenic
GCACTGGCTTGTGACTTTGC+AGG 0.430148 8_3:-61378478 Msa1299980:CDS
CCATCGACAGGTACCGGAAC+AGG 0.430608 8_3:-61375702 Msa1299980:CDS
GGTGGTGTGTTAGGAGGTAT+AGG 0.430692 8_3:-61375522 Msa1299980:CDS
ACGGGCACCGGCATGGGAAC+TGG 0.431282 8_3:-61375594 Msa1299980:CDS
GCCAGTGCCGGTGCCCGTGC+CGG 0.436350 8_3:+61375629 None:intergenic
TCTTAATGAGCAGGTGTTAG+TGG 0.445255 8_3:-61378336 Msa1299980:intron
CCAGGAGCTGTTGTACTGTA+TGG 0.447426 8_3:+61375543 None:intergenic
CACCAGCACGGGCACCGGCA+TGG 0.451856 8_3:-61375601 Msa1299980:CDS
GTGCCTACCCTTCAAGTGCC+AGG 0.455839 8_3:-61378311 Msa1299980:intron
ATGGAAAAGGACTTGGGAAA+TGG 0.456064 8_3:-61375172 Msa1299980:three_prime_UTR
CCGTCAACAGGCACAGGCAC+CGG 0.458680 8_3:-61375648 Msa1299980:CDS
ACTGGCACAGGCACCAGCAC+GGG 0.462030 8_3:-61375612 Msa1299980:CDS
TAGCAAAAGCCATGTTGTTA+GGG 0.462759 8_3:+61378876 None:intergenic
CCTGTTCCGGTACCTGTCGA+TGG 0.464706 8_3:+61375702 None:intergenic
AATCAGTATGGAAAAGGACT+TGG 0.466994 8_3:-61375179 Msa1299980:three_prime_UTR
GCTGGTGCCTGTGCCAGTGC+CGG 0.468284 8_3:+61375617 None:intergenic
GCTAGTAATCAGTATGGAAA+AGG 0.472605 8_3:-61375185 Msa1299980:three_prime_UTR
GGCACCAGCACCGGCGCCAC+TGG 0.476458 8_3:-61375573 Msa1299980:CDS
ACCGGAACAGGCACCGGCAT+GGG 0.478543 8_3:-61375678 Msa1299980:CDS
ATGGGAACTGGCACCAGCAC+CGG 0.478759 8_3:-61375582 Msa1299980:CDS
AGGAGGTATAGGCAGTGGTA+TGG 0.479837 8_3:-61375511 Msa1299980:CDS
AACAGGCACAGGCACCGGCA+CGG 0.482270 8_3:-61375643 Msa1299980:CDS
ACCAGCACGGGCACCGGCAT+GGG 0.486956 8_3:-61375600 Msa1299980:CDS
ACAGGCACAGGCACCGGCAC+GGG 0.490312 8_3:-61375642 Msa1299980:CDS
ACCACCCCGTCAACAGGCAC+AGG 0.497935 8_3:-61375654 Msa1299980:CDS
TTGATGAGGCATTGTGATTG+TGG 0.504018 8_3:-61375136 Msa1299980:three_prime_UTR
CCATGTTGTTAGGGTTAGAA+GGG 0.506014 8_3:+61378885 None:intergenic
TGACGGGGTGGTTCCCATGC+CGG 0.506240 8_3:+61375665 None:intergenic
GAATAGCTATTACCAGAAGA+AGG 0.510643 8_3:-61378509 Msa1299980:CDS
CACTGGCACAGGCACCAGCA+CGG 0.510648 8_3:-61375613 Msa1299980:CDS
AGAAGGGAAAGATGAGGTAA+TGG 0.512144 8_3:+61378901 None:intergenic
GAGTTGAGAGAGAGGAGTGG+TGG 0.513182 8_3:+61378975 None:intergenic
TTAGTAGTATATTATGATGA+TGG 0.519316 8_3:-61375357 Msa1299980:three_prime_UTR
ACTTGAAGGAATGGCGGTGA+AGG 0.520742 8_3:+61378826 None:intergenic
AGTTGAGAGAGAGGAGTGGT+GGG 0.524191 8_3:+61378976 None:intergenic
ATGGGGCCTTCTGGAGCTGG+AGG 0.525618 8_3:-61375492 Msa1299980:CDS
ATCATCATAATATACTACTA+AGG 0.527017 8_3:+61375359 None:intergenic
ACAGGCACCGGCACGGGCAC+CGG 0.528647 8_3:-61375636 Msa1299980:CDS
TGCTAATTGGTGCGTGTGCA+AGG 0.528841 8_3:-61378662 Msa1299980:CDS
ACAGGTACCGGAACAGGTAC+CGG 0.529650 8_3:-61375696 Msa1299980:CDS
CCATACAGTACAACAGCTCC+TGG 0.531703 8_3:-61375543 Msa1299980:CDS
CTGTTCCGGTACCTGTCGAT+GGG 0.535876 8_3:+61375703 None:intergenic
CCCTTCTAACCCTAACAACA+TGG 0.535980 8_3:-61378885 Msa1299980:exon
ACAAGCCCATCGACAGGTAC+CGG 0.539928 8_3:-61375708 Msa1299980:CDS
ACAGGTACCGGAACAGGCAC+CGG 0.541635 8_3:-61375684 Msa1299980:CDS
ACGGGCACCGGCACTGGCAC+AGG 0.543401 8_3:-61375624 Msa1299980:CDS
AGCGTAGTTACTTGAAGGAA+TGG 0.547220 8_3:+61378817 None:intergenic
AATTGGTGCGTGTGCAAGGA+TGG 0.547293 8_3:-61378658 Msa1299980:CDS
ATTTAAACCTGGCACTTGAA+GGG 0.550247 8_3:+61378304 None:intergenic
TACCGGAACAGGCACCGGCA+TGG 0.555969 8_3:-61375679 Msa1299980:CDS
GCTGGTGCCAGTTCCCATGC+CGG 0.564061 8_3:+61375587 None:intergenic
CAATGCCTCATCAAATAGGC+GGG 0.565282 8_3:+61375145 None:intergenic
AGCACAACAAGCCCATCGAC+AGG 0.566305 8_3:-61375714 Msa1299980:CDS
GTGTTAGGAGGTATAGGCAG+TGG 0.567121 8_3:-61375516 Msa1299980:CDS
GAGGTATAGGCAGTGGTATG+GGG 0.567753 8_3:-61375509 Msa1299980:CDS
ATCAGTATGGAAAAGGACTT+GGG 0.568805 8_3:-61375178 Msa1299980:three_prime_UTR
TGCAATCTTACAAAAGACCT+TGG 0.568888 8_3:-61378629 Msa1299980:CDS
ACAGGCACCAGCACGGGCAC+CGG 0.570846 8_3:-61375606 Msa1299980:CDS
GAAGAAGGGTCAACAAGCAC+TGG 0.571335 8_3:-61378494 Msa1299980:CDS
AAATATAAACATAGATTAGA+GGG 0.572185 8_3:+61379035 None:intergenic
ACGGTGTTTGGGTTGTAACA+AGG 0.576603 8_3:+61378556 None:intergenic
TCATGGTGGTCTTAGACTTG+TGG 0.577210 8_3:-61375454 Msa1299980:CDS
AAACCTGGCACTTGAAGGGT+AGG 0.578796 8_3:+61378308 None:intergenic
CTTGAAGGAATGGCGGTGAA+GGG 0.580427 8_3:+61378827 None:intergenic
GCTCCTGGTGGTGTGTTAGG+AGG 0.584893 8_3:-61375528 Msa1299980:CDS
GCCTGTGCCTGTTGACGGGG+TGG 0.585206 8_3:+61375653 None:intergenic
TGGAGTATTACCAGTGGCGC+CGG 0.591264 8_3:+61375563 None:intergenic
ATAGCTGCAATGAGCTCTAA+CGG 0.591747 8_3:+61378537 None:intergenic
AATAGCTATTACCAGAAGAA+GGG 0.608399 8_3:-61378508 Msa1299980:CDS
AAGACCTTGGACTATGCTTG+TGG 0.615068 8_3:-61378616 Msa1299980:CDS
TTCATTCCTCCAGCTCCAGA+AGG 0.618676 8_3:+61375486 None:intergenic
TAATAAAGACAGAAAAGAGA+GGG 0.621796 8_3:+61375412 None:intergenic
GGTGCCTGTGCCTGTTGACG+GGG 0.627721 8_3:+61375650 None:intergenic
AGCTCCACAAGCATAGTCCA+AGG 0.629352 8_3:+61378612 None:intergenic
GCAAACCCGCCTATTTGATG+AGG 0.630253 8_3:-61375150 Msa1299980:three_prime_UTR
ACAATGCCTCATCAAATAGG+CGG 0.632685 8_3:+61375144 None:intergenic
CAAGAACTGGCATAATTAGG+TGG 0.634315 8_3:+61375257 None:intergenic
AGGGTTAGAAGGGAAAGATG+AGG 0.646486 8_3:+61378895 None:intergenic
ATAATAAAGACAGAAAAGAG+AGG 0.649627 8_3:+61375411 None:intergenic
ATACCTCCTAACACACCACC+AGG 0.661726 8_3:+61375525 None:intergenic
CGTGGAAGAGCTAAAAGGTG+AGG 0.671038 8_3:+61378950 None:intergenic
GTTGAGTTGAGAGAGAGGAG+TGG 0.671818 8_3:+61378972 None:intergenic
GGAATGAATGATGATAGTCA+TGG 0.689619 8_3:-61375471 Msa1299980:CDS
GTAGTTACTTGAAGGAATGG+CGG 0.708118 8_3:+61378820 None:intergenic
TACAGTACAACAGCTCCTGG+TGG 0.711572 8_3:-61375540 Msa1299980:CDS
GGTGGGTGACAGAGAGACTG+AGG 0.728784 8_3:+61378993 None:intergenic
ACTGTATGGAGTATTACCAG+TGG 0.731514 8_3:+61375557 None:intergenic
ATGAATGATGATAGTCATGG+TGG 0.761282 8_3:-61375468 Msa1299980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTATGTAAAATAAATT+TGG + chr8_3:61376423-61376442 None:intergenic 10.0%
!! AAATAAATTTAATGATTCAT+TGG - chr8_3:61376713-61376732 Msa1299980:intron 10.0%
!! AAATATAAACATAGATTAGA+GGG + chr8_3:61375062-61375081 None:intergenic 15.0%
!! AAAATATAAACATAGATTAG+AGG + chr8_3:61375063-61375082 None:intergenic 15.0%
!!! TTAGCTACAATTATTTTAAA+AGG + chr8_3:61375707-61375726 None:intergenic 15.0%
!!! TTACTTTTGTTTATCATAAT+AGG - chr8_3:61375927-61375946 Msa1299980:intron 15.0%
!!! TACTTTTGTTTATCATAATA+GGG - chr8_3:61375928-61375947 Msa1299980:intron 15.0%
!!! TTTTATAGATATCTTTTTCA+TGG - chr8_3:61376241-61376260 Msa1299980:intron 15.0%
!! TATACATCAAAAGAATTAAT+GGG - chr8_3:61376395-61376414 Msa1299980:intron 15.0%
!!! TTTAAAATTTGTTGATGATA+AGG - chr8_3:61377410-61377429 Msa1299980:intron 15.0%
!!! TTAAAATTTGTTGATGATAA+GGG - chr8_3:61377411-61377430 Msa1299980:intron 15.0%
!!! ATACTTTTAACTACTTTTTA+AGG + chr8_3:61378018-61378037 None:intergenic 15.0%
!!! AAAAAGTAGTTAAAAGTATA+TGG - chr8_3:61378019-61378038 Msa1299980:intron 15.0%
!! TAGAGAAAAAAATTTAAACC+TGG + chr8_3:61375804-61375823 None:intergenic 20.0%
!! TAGATATATTCACACAAAAA+AGG - chr8_3:61375978-61375997 Msa1299980:intron 20.0%
!! AGATATATTCACACAAAAAA+GGG - chr8_3:61375979-61375998 Msa1299980:intron 20.0%
!! GTATACATCAAAAGAATTAA+TGG - chr8_3:61376394-61376413 Msa1299980:intron 20.0%
!! ATACATCAAAAGAATTAATG+GGG - chr8_3:61376396-61376415 Msa1299980:intron 20.0%
!!! TATTTTACATAATGATGATG+CGG - chr8_3:61376427-61376446 Msa1299980:intron 20.0%
!!! TTTTCATTTTACATACATAG+AGG + chr8_3:61376517-61376536 None:intergenic 20.0%
!!! ATTTTCTTTATAACAAAAGC+CGG + chr8_3:61376568-61376587 None:intergenic 20.0%
!!! TCTTTTTTGTATAGTAGTTT+AGG + chr8_3:61376748-61376767 None:intergenic 20.0%
!! TATACAAAAAAGAACTTGAA+AGG - chr8_3:61376755-61376774 Msa1299980:intron 20.0%
!!! TCTTTTCTTTTGAATTGATA+TGG - chr8_3:61377022-61377041 Msa1299980:intron 20.0%
!! AGAAAATAATAAAGTTCACT+TGG + chr8_3:61377115-61377134 None:intergenic 20.0%
!! ATATTCTTATTCCAGAAAAA+AGG + chr8_3:61377187-61377206 None:intergenic 20.0%
!! ATAAAGAAAAAGATCATTCT+TGG + chr8_3:61377227-61377246 None:intergenic 20.0%
!! AAAATAATGAAATGAATGCA+CGG + chr8_3:61377578-61377597 None:intergenic 20.0%
!!! CTATTTTGTTTTTGTTAATG+AGG + chr8_3:61377680-61377699 None:intergenic 20.0%
!! ATCCTGAATAAAAGTTTAAT+TGG - chr8_3:61377742-61377761 Msa1299980:intron 20.0%
!! TCCTGAATAAAAGTTTAATT+GGG - chr8_3:61377743-61377762 Msa1299980:intron 20.0%
!!! ATAAAAGTTTAATTGGGTTT+TGG - chr8_3:61377749-61377768 Msa1299980:intron 20.0%
!! TAGCATGAAATCTAAAAATT+AGG - chr8_3:61377962-61377981 Msa1299980:intron 20.0%
!! AAAATTTAATGCCTATGATA+AGG + chr8_3:61378075-61378094 None:intergenic 20.0%
!!! CATTAAATTTTGCGAAATTT+AGG - chr8_3:61378084-61378103 Msa1299980:intron 20.0%
!! TTAAATGTGTAATTATGAGT+TGG + chr8_3:61378285-61378304 None:intergenic 20.0%
!!! TTTCTGTCTTTATTATGTTT+TGG - chr8_3:61378690-61378709 Msa1299980:intron 20.0%
!! ATCATCATAATATACTACTA+AGG + chr8_3:61378738-61378757 None:intergenic 20.0%
!! TTAGTAGTATATTATGATGA+TGG - chr8_3:61378737-61378756 Msa1299980:intron 20.0%
! GCATTTGAAAAATGAAAAGA+AGG + chr8_3:61375316-61375335 None:intergenic 25.0%
!!! TCTTTTCATTTTTCAAATGC+TGG - chr8_3:61375316-61375335 Msa1299980:three_prime_UTR 25.0%
! AAGGAAAAACAAGAAAGAAA+AGG + chr8_3:61375688-61375707 None:intergenic 25.0%
!! TTGTAGCTAACTCTTTTTAT+TGG - chr8_3:61375717-61375736 Msa1299980:CDS 25.0%
!!! TGTGTTTTTGAAGAATCTTA+TGG - chr8_3:61375884-61375903 Msa1299980:intron 25.0%
!!! TATAGATATCTTTTTCATGG+TGG - chr8_3:61376244-61376263 Msa1299980:intron 25.0%
!! ATTCTTTTGATGTATACGTA+CGG + chr8_3:61376391-61376410 None:intergenic 25.0%
! TACATCAAAAGAATTAATGG+GGG - chr8_3:61376397-61376416 Msa1299980:intron 25.0%
! TATGTAAAATGAAAAAAGCC+AGG - chr8_3:61376522-61376541 Msa1299980:intron 25.0%
!!! TTATTTTGCTTTGATATGTG+TGG - chr8_3:61376827-61376846 Msa1299980:intron 25.0%
!! ATTCAAACTTTAGAAAGCAT+CGG + chr8_3:61377001-61377020 None:intergenic 25.0%
! TTTATTCCTAGAAGAATGAA+AGG - chr8_3:61377242-61377261 Msa1299980:intron 25.0%
! AAATTATAGAAAGTGATGTG+TGG + chr8_3:61377540-61377559 None:intergenic 25.0%
!! ACCCAATTAAACTTTTATTC+AGG + chr8_3:61377747-61377766 None:intergenic 25.0%
!! AACAATAAGATTTGCTCATT+AGG + chr8_3:61377893-61377912 None:intergenic 25.0%
!! AGGAATTGTTTAAAACATGA+CGG - chr8_3:61378124-61378143 Msa1299980:intron 25.0%
! TTCATATAAAATTGCAACTG+AGG - chr8_3:61378223-61378242 Msa1299980:intron 25.0%
! TCATATAAAATTGCAACTGA+GGG - chr8_3:61378224-61378243 Msa1299980:intron 25.0%
! AGACGCACAATAATAATTTA+AGG + chr8_3:61378320-61378339 None:intergenic 25.0%
! TAATAAAGACAGAAAAGAGA+GGG + chr8_3:61378685-61378704 None:intergenic 25.0%
! ATAATAAAGACAGAAAAGAG+AGG + chr8_3:61378686-61378705 None:intergenic 25.0%
!!! TGTCTTTATTATGTTTTGGT+GGG - chr8_3:61378694-61378713 Msa1299980:intron 25.0%
TTAGATAGCAATGAAAAACG+TGG + chr8_3:61375165-61375184 None:intergenic 30.0%
TCTCTAACTTTGACATATGT+AGG - chr8_3:61375409-61375428 Msa1299980:CDS 30.0%
AATAGCTATTACCAGAAGAA+GGG - chr8_3:61375586-61375605 Msa1299980:CDS 30.0%
GGTGAAAATGAGTATTTACT+TGG + chr8_3:61375667-61375686 None:intergenic 30.0%
AAGAATCTTATGGACAATAG+TGG - chr8_3:61375894-61375913 Msa1299980:intron 30.0%
TAGACAATAGTAGTGTATAG+TGG - chr8_3:61376070-61376089 Msa1299980:intron 30.0%
!! TTGTTTTGCATAGAGGTTAT+TGG - chr8_3:61376127-61376146 Msa1299980:intron 30.0%
! TGTTTTGCATAGAGGTTATT+GGG - chr8_3:61376128-61376147 Msa1299980:intron 30.0%
! CATTTTACATACATAGAGGA+GGG + chr8_3:61376513-61376532 None:intergenic 30.0%
! TCATTTTACATACATAGAGG+AGG + chr8_3:61376514-61376533 None:intergenic 30.0%
TAATCAATTATGTGACCTAC+CGG - chr8_3:61376546-61376565 Msa1299980:intron 30.0%
ACATATTTGCACACAAGATA+GGG + chr8_3:61376604-61376623 None:intergenic 30.0%
TACATATTTGCACACAAGAT+AGG + chr8_3:61376605-61376624 None:intergenic 30.0%
ACAATACATACACGTTGAAT+TGG + chr8_3:61376854-61376873 None:intergenic 30.0%
!!! GTGTTTTAAAAAAAGCCTGA+TGG - chr8_3:61377331-61377350 Msa1299980:intron 30.0%
!! TTTTAAAAAAAGCCTGATGG+AGG - chr8_3:61377334-61377353 Msa1299980:intron 30.0%
TTTAAAAAAAGCCTGATGGA+GGG - chr8_3:61377335-61377354 Msa1299980:intron 30.0%
! ATTGACTTTACGAAAGTTGA+TGG + chr8_3:61377482-61377501 None:intergenic 30.0%
! TACTCCTATTACTCCTATTT+TGG - chr8_3:61377646-61377665 Msa1299980:intron 30.0%
! ACTCCTATTACTCCTATTTT+GGG - chr8_3:61377647-61377666 Msa1299980:intron 30.0%
!!! GTTTAATTGGGTTTTGGTTT+TGG - chr8_3:61377755-61377774 Msa1299980:intron 30.0%
ATTTGCTCATTAGGTTTAGA+TGG + chr8_3:61377884-61377903 None:intergenic 30.0%
TTGTTGATGTGTATGTTCTT+TGG - chr8_3:61377908-61377927 Msa1299980:intron 30.0%
! ATGTGTATGTTCTTTGGTTT+GGG - chr8_3:61377914-61377933 Msa1299980:intron 30.0%
! TTAGGTGACATGTTTTATGA+TGG - chr8_3:61377980-61377999 Msa1299980:intron 30.0%
!! AGCTCTAAAAACCTTATCAT+AGG - chr8_3:61378061-61378080 Msa1299980:intron 30.0%
!! GTAATTATGAGTTGGTTTGT+CGG + chr8_3:61378277-61378296 None:intergenic 30.0%
!!! GTTCCTTTTTTACTAATCAG+TGG - chr8_3:61378347-61378366 Msa1299980:intron 30.0%
! GAACCACTGATTAGTAAAAA+AGG + chr8_3:61378353-61378372 None:intergenic 30.0%
! TTTTTACTAATCAGTGGTTC+AGG - chr8_3:61378353-61378372 Msa1299980:intron 30.0%
!! CTGTCTTTATTATGTTTTGG+TGG - chr8_3:61378693-61378712 Msa1299980:intron 30.0%
!!! GTCTTTATTATGTTTTGGTG+GGG - chr8_3:61378695-61378714 Msa1299980:intron 30.0%
TTCTTGTGGGTTTAAAAAGA+TGG - chr8_3:61378854-61378873 Msa1299980:CDS 30.0%
TCTTGTGGGTTTAAAAAGAT+GGG - chr8_3:61378855-61378874 Msa1299980:CDS 30.0%
AAAAACGTGGAAGAGCTAAA+AGG + chr8_3:61375152-61375171 None:intergenic 35.0%
TAGCAAAAGCCATGTTGTTA+GGG + chr8_3:61375221-61375240 None:intergenic 35.0%
TGAAAAGAAGGAAGATCTGA+AGG + chr8_3:61375304-61375323 None:intergenic 35.0%
TGACATATGTAGGTGCTAAT+TGG - chr8_3:61375419-61375438 Msa1299980:CDS 35.0%
TGCAATCTTACAAAAGACCT+TGG - chr8_3:61375465-61375484 Msa1299980:CDS 35.0%
GAATAGCTATTACCAGAAGA+AGG - chr8_3:61375585-61375604 Msa1299980:CDS 35.0%
TCTGTTTGTTCTTAATGAGC+AGG - chr8_3:61375749-61375768 Msa1299980:intron 35.0%
ATTTAAACCTGGCACTTGAA+GGG + chr8_3:61375793-61375812 None:intergenic 35.0%
AATTTAAACCTGGCACTTGA+AGG + chr8_3:61375794-61375813 None:intergenic 35.0%
! ACACAAAAAAGGGTTTTCCT+TGG - chr8_3:61375989-61376008 Msa1299980:intron 35.0%
! CACAAAAAAGGGTTTTCCTT+GGG - chr8_3:61375990-61376009 Msa1299980:intron 35.0%
!!! GACATTGTTGTTTTGCATAG+AGG - chr8_3:61376120-61376139 Msa1299980:intron 35.0%
! TGTAGTCTTTTTCTTCCCTA+CGG - chr8_3:61376486-61376505 Msa1299980:intron 35.0%
GGTCACATAATTGATTATCC+TGG + chr8_3:61376543-61376562 None:intergenic 35.0%
TCTTTATAACAAAAGCCGGT+AGG + chr8_3:61376564-61376583 None:intergenic 35.0%
TATAGTAGTTTAGGTCAGAC+AGG + chr8_3:61376739-61376758 None:intergenic 35.0%
GGCTATAATCACCAATGAAT+GGG + chr8_3:61376925-61376944 None:intergenic 35.0%
GTACCACTACTACTAAAACA+AGG - chr8_3:61377056-61377075 Msa1299980:intron 35.0%
! AACTTGTCTTTTGACGATGA+TGG + chr8_3:61377089-61377108 None:intergenic 35.0%
!!! ATCTTGCTTTGCCTTTTTTC+TGG - chr8_3:61377173-61377192 Msa1299980:intron 35.0%
ATTCCTAGAAGAATGAAAGG+TGG - chr8_3:61377245-61377264 Msa1299980:intron 35.0%
ATTCCACCTTTCATTCTTCT+AGG + chr8_3:61377251-61377270 None:intergenic 35.0%
TAATGAAATGAATGCACGGT+TGG + chr8_3:61377574-61377593 None:intergenic 35.0%
AGTCCCAAAATAGGAGTAAT+AGG + chr8_3:61377653-61377672 None:intergenic 35.0%
TAGTCTCATCAAAACTACCT+TGG - chr8_3:61377697-61377716 Msa1299980:intron 35.0%
!!! TGGTTTTGGTTTGTGTGAAT+AGG - chr8_3:61377769-61377788 Msa1299980:intron 35.0%
GCTTACATGACATACAGTAA+AGG + chr8_3:61377795-61377814 None:intergenic 35.0%
GATGTGTATGTTCTTTGGTT+TGG - chr8_3:61377913-61377932 Msa1299980:intron 35.0%
GTATATGGAAATGTGTAGAC+TGG - chr8_3:61378034-61378053 Msa1299980:intron 35.0%
!!! AGGTGACACGTTTTGAAAAT+AGG - chr8_3:61378104-61378123 Msa1299980:intron 35.0%
GGAATGAATGATGATAGTCA+TGG - chr8_3:61378623-61378642 Msa1299980:CDS 35.0%
ATGAATGATGATAGTCATGG+TGG - chr8_3:61378626-61378645 Msa1299980:CDS 35.0%
GTGGGGTTAAAAAGATAAAG+CGG - chr8_3:61378712-61378731 Msa1299980:intron 35.0%
CTAATTATGCCAGTTCTTGT+GGG - chr8_3:61378841-61378860 Msa1299980:CDS 35.0%
! CTTTTTAAACCCACAAGAAC+TGG + chr8_3:61378853-61378872 None:intergenic 35.0%
TGTTAGGCTAGTAATCAGTA+TGG - chr8_3:61378903-61378922 Msa1299980:five_prime_UTR 35.0%
GCTAGTAATCAGTATGGAAA+AGG - chr8_3:61378909-61378928 Msa1299980:five_prime_UTR 35.0%
AATCAGTATGGAAAAGGACT+TGG - chr8_3:61378915-61378934 Msa1299980:five_prime_UTR 35.0%
ATCAGTATGGAAAAGGACTT+GGG - chr8_3:61378916-61378935 Msa1299980:five_prime_UTR 35.0%
ATCACAATGCCTCATCAAAT+AGG + chr8_3:61378956-61378975 None:intergenic 35.0%
CATTGTGATTGTGGTGTTTA+AGG - chr8_3:61378967-61378986 Msa1299980:five_prime_UTR 35.0%
AGAAGGGAAAGATGAGGTAA+TGG + chr8_3:61375196-61375215 None:intergenic 40.0%
CCATGTTGTTAGGGTTAGAA+GGG + chr8_3:61375212-61375231 None:intergenic 40.0%
GTAGCAAAAGCCATGTTGTT+AGG + chr8_3:61375222-61375241 None:intergenic 40.0%
GTAGTTACTTGAAGGAATGG+CGG + chr8_3:61375277-61375296 None:intergenic 40.0%
AGCGTAGTTACTTGAAGGAA+TGG + chr8_3:61375280-61375299 None:intergenic 40.0%
AAGGTAGCGTAGTTACTTGA+AGG + chr8_3:61375285-61375304 None:intergenic 40.0%
! AATGAGCTCTAACGGTGTTT+GGG + chr8_3:61375552-61375571 None:intergenic 40.0%
! ATAGCTGCAATGAGCTCTAA+CGG + chr8_3:61375560-61375579 None:intergenic 40.0%
TCTTAATGAGCAGGTGTTAG+TGG - chr8_3:61375758-61375777 Msa1299980:intron 40.0%
! AAAAGGGTTTTCCTTGGGTT+AGG - chr8_3:61375995-61376014 Msa1299980:intron 40.0%
TTTGCATAGAGGTTATTGGG+AGG - chr8_3:61376131-61376150 Msa1299980:intron 40.0%
GTGTCTTGTGCTTTGCAATT+AGG - chr8_3:61376153-61376172 Msa1299980:intron 40.0%
GTGTCATCTCTTTGTCTGTT+TGG - chr8_3:61376296-61376315 Msa1299980:intron 40.0%
ATCTCTTTGTCTGTTTGGCA+TGG - chr8_3:61376301-61376320 Msa1299980:intron 40.0%
ATTGGAAACGTCATCACGAT+AGG + chr8_3:61376896-61376915 None:intergenic 40.0%
CCAATGAATGGGCACTAAAT+TGG + chr8_3:61376914-61376933 None:intergenic 40.0%
CCAATTTAGTGCCCATTCAT+TGG - chr8_3:61376911-61376930 Msa1299980:intron 40.0%
CGGCTATAATCACCAATGAA+TGG + chr8_3:61376926-61376945 None:intergenic 40.0%
!!! GAGCCTTGTTTTAGTAGTAG+TGG + chr8_3:61377062-61377081 None:intergenic 40.0%
AACTCAGAATTACCCATGAC+CGG + chr8_3:61377392-61377411 None:intergenic 40.0%
TGAGGCTTAAGTCCCAAAAT+AGG + chr8_3:61377662-61377681 None:intergenic 40.0%
AAGAAATCAAGAACCAGCCA+AGG + chr8_3:61377717-61377736 None:intergenic 40.0%
! CTGAGTAGAGAGTATGTACT+AGG - chr8_3:61377835-61377854 Msa1299980:intron 40.0%
! ACTGTATGGAGTATTACCAG+TGG + chr8_3:61378540-61378559 None:intergenic 40.0%
CAAGAACTGGCATAATTAGG+TGG + chr8_3:61378840-61378859 None:intergenic 40.0%
CCACAAGAACTGGCATAATT+AGG + chr8_3:61378843-61378862 None:intergenic 40.0%
CCTAATTATGCCAGTTCTTG+TGG - chr8_3:61378840-61378859 Msa1299980:CDS 40.0%
ATGGAAAAGGACTTGGGAAA+TGG - chr8_3:61378922-61378941 Msa1299980:five_prime_UTR 40.0%
ACAATGCCTCATCAAATAGG+CGG + chr8_3:61378953-61378972 None:intergenic 40.0%
!! TTGATGAGGCATTGTGATTG+TGG - chr8_3:61378958-61378977 Msa1299980:five_prime_UTR 40.0%
GACTGAGGTGTGAGAATAAC+AGG + chr8_3:61375089-61375108 None:intergenic 45.0%
AGGGTTAGAAGGGAAAGATG+AGG + chr8_3:61375202-61375221 None:intergenic 45.0%
CCCTTCTAACCCTAACAACA+TGG - chr8_3:61375209-61375228 Msa1299980:three_prime_UTR 45.0%
GCCATGTTGTTAGGGTTAGA+AGG + chr8_3:61375213-61375232 None:intergenic 45.0%
AAGACCTTGGACTATGCTTG+TGG - chr8_3:61375478-61375497 Msa1299980:CDS 45.0%
!!! AAGGAGCGTTTTGACGAAGA+GGG + chr8_3:61375522-61375541 None:intergenic 45.0%
!! ACGGTGTTTGGGTTGTAACA+AGG + chr8_3:61375541-61375560 None:intergenic 45.0%
! CAATGAGCTCTAACGGTGTT+TGG + chr8_3:61375553-61375572 None:intergenic 45.0%
AGAACACAGACTCACTGCAA+CGG + chr8_3:61376946-61376965 None:intergenic 45.0%
AATATACCGTCACCGGTCAT+GGG - chr8_3:61377377-61377396 Msa1299980:intron 45.0%
GAGTCAAGTGTCTGTTGATC+AGG + chr8_3:61377449-61377468 None:intergenic 45.0%
! CAGACACTTGACTCGATATC+TGG - chr8_3:61377455-61377474 Msa1299980:intron 45.0%
TTGGTCATGCACGAACATCA+AGG + chr8_3:61377509-61377528 None:intergenic 45.0%
GTGATGTGTGGTAGCACAAT+TGG + chr8_3:61377528-61377547 None:intergenic 45.0%
CTCATCAAAACTACCTTGGC+TGG - chr8_3:61377701-61377720 Msa1299980:intron 45.0%
CATACTCTCTACTCAGCTGA+AGG + chr8_3:61377831-61377850 None:intergenic 45.0%
! TCATGGTGGTCTTAGACTTG+TGG - chr8_3:61378640-61378659 Msa1299980:CDS 45.0%
CAATGCCTCATCAAATAGGC+GGG + chr8_3:61378952-61378971 None:intergenic 45.0%
!!! TGAATTTTTTTTTTTTTTTT+TGG - chr8_3:61376452-61376471 Msa1299980:intron 5.0%
!!! GAATTTTTTTTTTTTTTTTT+GGG - chr8_3:61376453-61376472 Msa1299980:intron 5.0%
!! TAAAAAAAAATATAATGAAT+TGG + chr8_3:61376650-61376669 None:intergenic 5.0%
!!! AATTAATTAATTATTTTGTT+AGG - chr8_3:61378887-61378906 Msa1299980:exon 5.0%
AGTTGAGAGAGAGGAGTGGT+GGG + chr8_3:61375121-61375140 None:intergenic 50.0%
!! GTTGAGTTGAGAGAGAGGAG+TGG + chr8_3:61375125-61375144 None:intergenic 50.0%
!! GTGAGGTTGAGTTGAGAGAG+AGG + chr8_3:61375130-61375149 None:intergenic 50.0%
CGTGGAAGAGCTAAAAGGTG+AGG + chr8_3:61375147-61375166 None:intergenic 50.0%
CTTGAAGGAATGGCGGTGAA+GGG + chr8_3:61375270-61375289 None:intergenic 50.0%
ACTTGAAGGAATGGCGGTGA+AGG + chr8_3:61375271-61375290 None:intergenic 50.0%
TGCTAATTGGTGCGTGTGCA+AGG - chr8_3:61375432-61375451 Msa1299980:CDS 50.0%
AATTGGTGCGTGTGCAAGGA+TGG - chr8_3:61375436-61375455 Msa1299980:CDS 50.0%
AGCTCCACAAGCATAGTCCA+AGG + chr8_3:61375485-61375504 None:intergenic 50.0%
TTGGACTATGCTTGTGGAGC+TGG - chr8_3:61375484-61375503 Msa1299980:CDS 50.0%
!!! CAAGGAGCGTTTTGACGAAG+AGG + chr8_3:61375523-61375542 None:intergenic 50.0%
! GTGCTTGTTGACCCTTCTTC+TGG + chr8_3:61375600-61375619 None:intergenic 50.0%
GAAGAAGGGTCAACAAGCAC+TGG - chr8_3:61375600-61375619 Msa1299980:CDS 50.0%
AAACCTGGCACTTGAAGGGT+AGG + chr8_3:61375789-61375808 None:intergenic 50.0%
!! AGGGTTTTCCTTGGGTTAGG+TGG - chr8_3:61375998-61376017 Msa1299980:intron 50.0%
!! GGGTTTTCCTTGGGTTAGGT+GGG - chr8_3:61375999-61376018 Msa1299980:intron 50.0%
!! GGTTTTCCTTGGGTTAGGTG+GGG - chr8_3:61376000-61376019 Msa1299980:intron 50.0%
GCAAGCTGCGAATATGCCTA+TGG + chr8_3:61376036-61376055 None:intergenic 50.0%
TACATAGAGGAGGGACCGTA+GGG + chr8_3:61376504-61376523 None:intergenic 50.0%
ATACATAGAGGAGGGACCGT+AGG + chr8_3:61376505-61376524 None:intergenic 50.0%
! AAGCCTGATGGAGGGAGTAT+TGG - chr8_3:61377343-61377362 Msa1299980:intron 50.0%
ACTCCAATACTCCCTCCATC+AGG + chr8_3:61377349-61377368 None:intergenic 50.0%
!! TGGAGGGAGTATTGGAGTAC+TGG - chr8_3:61377351-61377370 Msa1299980:intron 50.0%
!! GGAGGGAGTATTGGAGTACT+GGG - chr8_3:61377352-61377371 Msa1299980:intron 50.0%
! CATGACCGGTGACGGTATAT+TGG + chr8_3:61377378-61377397 None:intergenic 50.0%
CAATATACCGTCACCGGTCA+TGG - chr8_3:61377376-61377395 Msa1299980:intron 50.0%
GAATTACCCATGACCGGTGA+CGG + chr8_3:61377386-61377405 None:intergenic 50.0%
CCAGGAGCTGTTGTACTGTA+TGG + chr8_3:61378554-61378573 None:intergenic 50.0%
CCATACAGTACAACAGCTCC+TGG - chr8_3:61378551-61378570 Msa1299980:CDS 50.0%
TACAGTACAACAGCTCCTGG+TGG - chr8_3:61378554-61378573 Msa1299980:CDS 50.0%
ATACCTCCTAACACACCACC+AGG + chr8_3:61378572-61378591 None:intergenic 50.0%
! GGTGGTGTGTTAGGAGGTAT+AGG - chr8_3:61378572-61378591 Msa1299980:CDS 50.0%
! GTGTTAGGAGGTATAGGCAG+TGG - chr8_3:61378578-61378597 Msa1299980:CDS 50.0%
! AGGAGGTATAGGCAGTGGTA+TGG - chr8_3:61378583-61378602 Msa1299980:CDS 50.0%
! GGAGGTATAGGCAGTGGTAT+GGG - chr8_3:61378584-61378603 Msa1299980:CDS 50.0%
GAGGTATAGGCAGTGGTATG+GGG - chr8_3:61378585-61378604 Msa1299980:CDS 50.0%
TTCATTCCTCCAGCTCCAGA+AGG + chr8_3:61378611-61378630 None:intergenic 50.0%
GCAAACCCGCCTATTTGATG+AGG - chr8_3:61378944-61378963 Msa1299980:five_prime_UTR 50.0%
GAGTTGAGAGAGAGGAGTGG+TGG + chr8_3:61375122-61375141 None:intergenic 55.0%
!! GCACTGGCTTGTGACTTTGC+AGG - chr8_3:61375616-61375635 Msa1299980:CDS 55.0%
GTGGGGACATGCTTTGCCAT+AGG - chr8_3:61376017-61376036 Msa1299980:intron 55.0%
CTGGGCCAATATACCGTCAC+CGG - chr8_3:61377370-61377389 Msa1299980:intron 55.0%
AGCACAACAAGCCCATCGAC+AGG - chr8_3:61378380-61378399 Msa1299980:intron 55.0%
ACAAGCCCATCGACAGGTAC+CGG - chr8_3:61378386-61378405 Msa1299980:intron 55.0%
CTGTTCCGGTACCTGTCGAT+GGG + chr8_3:61378394-61378413 None:intergenic 55.0%
!! ACAGGTACCGGAACAGGTAC+CGG - chr8_3:61378398-61378417 Msa1299980:intron 55.0%
! TGGAGTATTACCAGTGGCGC+CGG + chr8_3:61378534-61378553 None:intergenic 55.0%
! ACAGCTCCTGGTGGTGTGTT+AGG - chr8_3:61378563-61378582 Msa1299980:CDS 55.0%
GGTGGGTGACAGAGAGACTG+AGG + chr8_3:61375104-61375123 None:intergenic 60.0%
GTGCCTACCCTTCAAGTGCC+AGG - chr8_3:61375783-61375802 Msa1299980:intron 60.0%
GCATGTCCCCACCTAACCCA+AGG + chr8_3:61376009-61376028 None:intergenic 60.0%
CCTGTTCCGGTACCTGTCGA+TGG + chr8_3:61378395-61378414 None:intergenic 60.0%
!! CCATCGACAGGTACCGGAAC+AGG - chr8_3:61378392-61378411 Msa1299980:intron 60.0%
!! ACCGGAACAGGTACCGGAAC+AGG - chr8_3:61378404-61378423 Msa1299980:intron 60.0%
GCCTGTTCCGGTACCTGTTC+CGG + chr8_3:61378408-61378427 None:intergenic 60.0%
!! ACAGGTACCGGAACAGGCAC+CGG - chr8_3:61378410-61378429 Msa1299980:intron 60.0%
ATGGGAACCACCCCGTCAAC+AGG - chr8_3:61378434-61378453 Msa1299980:intron 60.0%
ATGGGAACTGGCACCAGCAC+CGG - chr8_3:61378512-61378531 Msa1299980:CDS 60.0%
! GCTCCTGGTGGTGTGTTAGG+AGG - chr8_3:61378566-61378585 Msa1299980:CDS 60.0%
!! TACCGGAACAGGCACCGGCA+TGG - chr8_3:61378415-61378434 Msa1299980:intron 65.0%
!! ACCGGAACAGGCACCGGCAT+GGG - chr8_3:61378416-61378435 Msa1299980:intron 65.0%
TCCCATGCCGGTGCCTGTTC+CGG + chr8_3:61378420-61378439 None:intergenic 65.0%
TGACGGGGTGGTTCCCATGC+CGG + chr8_3:61378432-61378451 None:intergenic 65.0%
ACCACCCCGTCAACAGGCAC+AGG - chr8_3:61378440-61378459 Msa1299980:intron 65.0%
GGTGCCTGTGCCTGTTGACG+GGG + chr8_3:61378447-61378466 None:intergenic 65.0%
CGGTGCCTGTGCCTGTTGAC+GGG + chr8_3:61378448-61378467 None:intergenic 65.0%
CCGGTGCCTGTGCCTGTTGA+CGG + chr8_3:61378449-61378468 None:intergenic 65.0%
CCGTCAACAGGCACAGGCAC+CGG - chr8_3:61378446-61378465 Msa1299980:intron 65.0%
!! AACAGGCACAGGCACCGGCA+CGG - chr8_3:61378451-61378470 Msa1299980:CDS 65.0%
CACTGGCACAGGCACCAGCA+CGG - chr8_3:61378481-61378500 Msa1299980:CDS 65.0%
ACTGGCACAGGCACCAGCAC+GGG - chr8_3:61378482-61378501 Msa1299980:CDS 65.0%
! GCTGGTGCCAGTTCCCATGC+CGG + chr8_3:61378510-61378529 None:intergenic 65.0%
!! ATTACCAGTGGCGCCGGTGC+TGG + chr8_3:61378528-61378547 None:intergenic 65.0%
GGCAGTGGTATGGGGCCTTC+TGG - chr8_3:61378593-61378612 Msa1299980:CDS 65.0%
!! GGTATGGGGCCTTCTGGAGC+TGG - chr8_3:61378599-61378618 Msa1299980:CDS 65.0%
!! ATGGGGCCTTCTGGAGCTGG+AGG - chr8_3:61378602-61378621 Msa1299980:CDS 65.0%
GCCTGTGCCTGTTGACGGGG+TGG + chr8_3:61378444-61378463 None:intergenic 70.0%
!! ACAGGCACAGGCACCGGCAC+GGG - chr8_3:61378452-61378471 Msa1299980:CDS 70.0%
GCTGGTGCCTGTGCCAGTGC+CGG + chr8_3:61378480-61378499 None:intergenic 70.0%
ACAGGCACCAGCACGGGCAC+CGG - chr8_3:61378488-61378507 Msa1299980:CDS 70.0%
!! ACCAGCACGGGCACCGGCAT+GGG - chr8_3:61378494-61378513 Msa1299980:CDS 70.0%
!! ACGGGCACCGGCATGGGAAC+TGG - chr8_3:61378500-61378519 Msa1299980:CDS 70.0%
!! ACAGGCACCGGCACGGGCAC+CGG - chr8_3:61378458-61378477 Msa1299980:CDS 75.0%
!! ACGGGCACCGGCACTGGCAC+AGG - chr8_3:61378470-61378489 Msa1299980:CDS 75.0%
!! CACCAGCACGGGCACCGGCA+TGG - chr8_3:61378493-61378512 Msa1299980:CDS 75.0%
TCCCATGCCGGTGCCCGTGC+TGG + chr8_3:61378498-61378517 None:intergenic 75.0%
!!! ACCGGCACGGGCACCGGCAC+TGG - chr8_3:61378464-61378483 Msa1299980:CDS 80.0%
!!! GCCAGTGCCGGTGCCCGTGC+CGG + chr8_3:61378468-61378487 None:intergenic 80.0%
!!! GGCACCAGCACCGGCGCCAC+TGG - chr8_3:61378521-61378540 Msa1299980:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 61375054 61379062 61375054 ID=Msa1299980;Name=Msa1299980
chr8_3 mRNA 61375054 61379062 61375054 ID=Msa1299980-mRNA-1;Parent=Msa1299980;Name=Msa1299980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=174|1|1|1|1|1|4|341|228
chr8_3 exon 61375054 61375749 61375054 ID=Msa1299980-mRNA-1:exon:18063;Parent=Msa1299980-mRNA-1
chr8_3 exon 61378312 61378345 61378312 ID=Msa1299980-mRNA-1:exon:18062;Parent=Msa1299980-mRNA-1
chr8_3 exon 61378449 61378685 61378449 ID=Msa1299980-mRNA-1:exon:18061;Parent=Msa1299980-mRNA-1
chr8_3 exon 61378828 61379062 61378828 ID=Msa1299980-mRNA-1:exon:18060;Parent=Msa1299980-mRNA-1
chr8_3 five_prime_UTR 61378889 61379062 61378889 ID=Msa1299980-mRNA-1:five_prime_utr;Parent=Msa1299980-mRNA-1
chr8_3 CDS 61378828 61378888 61378828 ID=Msa1299980-mRNA-1:cds;Parent=Msa1299980-mRNA-1
chr8_3 CDS 61378449 61378685 61378449 ID=Msa1299980-mRNA-1:cds;Parent=Msa1299980-mRNA-1
chr8_3 CDS 61378312 61378345 61378312 ID=Msa1299980-mRNA-1:cds;Parent=Msa1299980-mRNA-1
chr8_3 CDS 61375395 61375749 61375395 ID=Msa1299980-mRNA-1:cds;Parent=Msa1299980-mRNA-1
chr8_3 three_prime_UTR 61375054 61375394 61375054 ID=Msa1299980-mRNA-1:three_prime_utr;Parent=Msa1299980-mRNA-1
Gene Sequence

>Msa1299980

ATGGCTTTTGCTACTCTTGCTCTTGTACTTCTTCTTTTGCCCTTCACCGCCATTCCTTCAAGTGCTAATTGGTGCGTGTGCAAGGATGGAGCTGATGCAATCTTACAAAAGACCTTGGACTATGCTTGTGGAGCTGGAGCTGACTGTAACCCTCTTCGTCAAAACGCTCCTTGTTACAACCCAAACACCGTTAGAGCTCATTGCAGCTATGCTGTGAATAGCTATTACCAGAAGAAGGGTCAACAAGCACTGGCTTGTGACTTTGCAGGAACAGCTACTGTTGTTACATCTGATCCAAGTGTTAGTGGCTGTGCCTACCCTTCAAGTGCCAGTGGTTCAGGCACTAGCACAACAAGCCCATCGACAGGTACCGGAACAGGTACCGGAACAGGCACCGGCATGGGAACCACCCCGTCAACAGGCACAGGCACCGGCACGGGCACCGGCACTGGCACAGGCACCAGCACGGGCACCGGCATGGGAACTGGCACCAGCACCGGCGCCACTGGTAATACTCCATACAGTACAACAGCTCCTGGTGGTGTGTTAGGAGGTATAGGCAGTGGTATGGGGCCTTCTGGAGCTGGAGGAATGAATGATGATAGTCATGGTGGTCTTAGACTTGTGGACACTAGTTTCTTATCAATCCCTCTCTTTTCTGTCTTTATTATGTTTTGGTGGGGTTAA
Protein sequence

>Msa1299980

MAFATLALVLLLLPFTAIPSSANWCVCKDGADAILQKTLDYACGAGADCNPLRQNAPCYNPNTVRAHCSYAVNSYYQKKGQQALACDFAGTATVVTSDPSVSGCAYPSSASGSGTSTTSPSTGTGTGTGTGTGMGTTPSTGTGTGTGTGTGTGTSTGTGMGTGTSTGATGNTPYSTTAPGGVLGGIGSGMGPSGAGGMNDDSHGGLRLVDTSFLSIPLFSVFIMFWWG*