AlfalfaGEDB | Msa1111640

M. sativa cultivar zhongmu-4 / Msa1111640

KEGG: -
GO: GO:0000139 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0007034 GO:0008104 GO:0008150 GO:0009940 GO:0010008 GO:0010209 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030135 GO:0030136 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098805
PFAM: PF02225.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111640	XP_003623631.1	97.017	637	7	1	1	637	1	625	0.0	1276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111640	sp\|P93026\|VSR1_ARATH	69.062	640	176	6	3	637	1	623	0.0	910

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111640	G7KY61	97.017	637	7	1	1	637	1	625	0.0	1276

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0221540	Msa1111640	0.805647	1.206755e-49	-8.615850e-47
Msa0304680	Msa1111640	0.811996	5.294194e-51	-8.615850e-47
Msa1026480	Msa1111640	0.844523	7.174219e-59	-8.615850e-47
Msa1111640	Msa1129330	0.807914	4.004947e-50	-8.615850e-47
Msa1111640	Msa1167180	0.970929	2.272058e-132	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1111640	MtrunA17_Chr7g0244951	97.017	637	7	1	1	637	1	625	0.0	1276
Msa1111640	MtrunA17_Chr8g0334591	75.079	634	139	4	8	637	7	625	0.0	1005
Msa1111640	MtrunA17_Chr1g0207291	64.992	617	197	3	21	631	25	628	0.0	871
Msa1111640	MtrunA17_Chr5g0393731	63.380	639	212	6	1	635	3	623	0.0	859
Msa1111640	MtrunA17_Chr2g0296671	58.917	628	239	5	3	627	1	612	0.0	744
Msa1111640	MtrunA17_Chr3g0133721	59.524	42	17	0	22	63	26	67	2.61e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1111640	AT3G52850.1	69.062	640	176	6	3	637	1	623	910
Msa1111640	AT2G30290.1	66.667	621	191	3	7	624	8	615	895
Msa1111640	AT2G30290.2	66.667	621	191	3	7	624	8	615	894
Msa1111640	AT2G14720.1	66.667	612	186	4	22	629	24	621	880
Msa1111640	AT2G14720.2	66.667	612	186	4	22	629	24	621	880
Msa1111640	AT2G14740.2	66.074	619	190	4	22	636	24	626	879
Msa1111640	AT2G14740.1	66.074	619	190	4	22	636	24	626	879
Msa1111640	AT1G30900.1	56.962	632	250	6	7	635	10	622	759
Msa1111640	AT4G20110.1	56.704	619	246	6	8	623	12	611	745
Msa1111640	AT4G20110.2	56.019	623	247	8	8	623	12	614	730

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Find 170 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACACAGAAGAATGCT+CGG	0.568793	7_3:-57356283	Msa1111640:CDS
AAAATGCATATCCTCCAGAA+AGG	0.538733	7_3:+57353274	None:intergenic
AAACAATGGTGGTTGTTGGA+AGG	0.640261	7_3:-57355465	Msa1111640:CDS
AAAGGAAGGTGACCCAGATG+AGG	0.654053	7_3:+57358575	None:intergenic
AAAGGGTAACGACCATCACA+AGG	0.679891	7_3:+57353292	None:intergenic
AAAGGTTGCGAGTGTCCGTC+AGG	0.439256	7_3:-57354696	Msa1111640:CDS
AAAGTGGAAGACCTTGGCAA+TGG	0.716769	7_3:-57356353	Msa1111640:CDS
AAATGCATATCCTCCAGAAA+GGG	0.551290	7_3:+57353275	None:intergenic
AACGAGTGTTTGGAAAACAA+TGG	0.681450	7_3:-57355479	Msa1111640:CDS
AACTTAATATTGTTTACAAC+AGG	0.326723	7_3:+57355271	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTCAATTTCCTCATCT+GGG	-	chr7_3:57352705-57352724	Msa1111640:three_prime_UTR	30.0%
GTAATTAATGCAGCTTAGTT+TGG	+	chr7_3:57352750-57352769	None:intergenic	30.0%
TAAAACTCTTAGTGCATGTT+TGG	-	chr7_3:57353128-57353147	Msa1111640:intron	30.0%
CAAATTGAGATTACAGAATC+AGG	+	chr7_3:57353191-57353210	None:intergenic	30.0%
AAACGACTAATATTGTGAGA+CGG	+	chr7_3:57353375-57353394	None:intergenic	30.0%
CTCACAATATTAGTCGTTTA+AGG	-	chr7_3:57353376-57353395	Msa1111640:intron	30.0%
AAGTGACAATTATTGTGAGA+CGG	-	chr7_3:57353562-57353581	Msa1111640:intron	30.0%
TTGCATGACATGGAATTTAT+AGG	-	chr7_3:57353710-57353729	Msa1111640:intron	30.0%
TGACATGGAATTTATAGGAA+AGG	-	chr7_3:57353715-57353734	Msa1111640:intron	30.0%
TAGCAAGGAACTTAATATAG+TGG	+	chr7_3:57353759-57353778	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	57352552	57358762	57352552	ID=Msa1111640;Name=Msa1111640
chr7_3	mRNA	57352552	57358762	57352552	ID=Msa1111640-mRNA-1;Parent=Msa1111640;Name=Msa1111640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=257\|0.90\|0.91\|1\|1\|1\|12\|241\|637
chr7_3	exon	57352552	57352897	57352552	ID=Msa1111640-mRNA-1:exon:12334;Parent=Msa1111640-mRNA-1
chr7_3	exon	57353257	57353354	57353257	ID=Msa1111640-mRNA-1:exon:12333;Parent=Msa1111640-mRNA-1
chr7_3	exon	57354357	57354485	57354357	ID=Msa1111640-mRNA-1:exon:12332;Parent=Msa1111640-mRNA-1
chr7_3	exon	57354664	57354730	57354664	ID=Msa1111640-mRNA-1:exon:12331;Parent=Msa1111640-mRNA-1
chr7_3	exon	57354848	57354930	57354848	ID=Msa1111640-mRNA-1:exon:12330;Parent=Msa1111640-mRNA-1
chr7_3	exon	57355242	57355323	57355242	ID=Msa1111640-mRNA-1:exon:12329;Parent=Msa1111640-mRNA-1
chr7_3	exon	57355436	57355512	57355436	ID=Msa1111640-mRNA-1:exon:12328;Parent=Msa1111640-mRNA-1
chr7_3	exon	57355650	57355769	57355650	ID=Msa1111640-mRNA-1:exon:12327;Parent=Msa1111640-mRNA-1
chr7_3	exon	57355854	57355923	57355854	ID=Msa1111640-mRNA-1:exon:12326;Parent=Msa1111640-mRNA-1
chr7_3	exon	57356027	57356115	57356027	ID=Msa1111640-mRNA-1:exon:12325;Parent=Msa1111640-mRNA-1
chr7_3	exon	57356262	57356957	57356262	ID=Msa1111640-mRNA-1:exon:12324;Parent=Msa1111640-mRNA-1
chr7_3	exon	57358208	57358762	57358208	ID=Msa1111640-mRNA-1:exon:12323;Parent=Msa1111640-mRNA-1
chr7_3	five_prime_UTR	57358506	57358762	57358506	ID=Msa1111640-mRNA-1:five_prime_utr;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57358208	57358505	57358208	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57356262	57356957	57356262	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57356027	57356115	57356027	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57355854	57355923	57355854	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57355650	57355769	57355650	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57355436	57355512	57355436	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57355242	57355323	57355242	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57354848	57354930	57354848	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57354664	57354730	57354664	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57354357	57354485	57354357	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57353257	57353354	57353257	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	CDS	57352793	57352897	57352793	ID=Msa1111640-mRNA-1:cds;Parent=Msa1111640-mRNA-1
chr7_3	three_prime_UTR	57352552	57352792	57352552	ID=Msa1111640-mRNA-1:three_prime_utr;Parent=Msa1111640-mRNA-1

Gene Sequence

>Msa1111640

ATGATCATTAAGTTGAATCTTTTGTTGTTGTGTGTTTTGGTTTTGTTTCTGGAGTGTTGTTTTGGTAGGTTTTTGGTGGAGAAGAATAGTTTGAGAATCACTTCACCAAAATCGTTGAAGGGTAGTTATGAATGCGCAATTGGAAATTTTGGAGTTCCTCAATATGGTGGAACATTGGTTGGTTCTGTGGTTTATCCGAATGTGAATCAGAAGGGATGCAAGAATTTTACTGATTTCAGTGCTTCGTTTCATTCCATGCCTGGAAATTTTCCCACCTTTGTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAAAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAGAGAAGAAAGACTAATCACGATGGACACTCCTGAAGAAGGGAATGTTGTAAACGATGATTATATAGAAAAAATTAACATTCCTTCTGCTCTTATCAGCAAATCCTTGGGGGATAGAATCAAGAAGGCTCTCTCAGATGGGGAGATGGTTCACATAAATCTTGATTGGCGAGAGGCTCTTCCACATCCTGATGACAGGGTTGAGTATGAATTATGGACAAATAGCAACGACGAATGTGGGCCAAAGTGTGACAATCAAATTAATTTTGTTAAGAGCTTTAAAGGAGCAGCTCAGCTACTTGAGAAGAAGGGGTTCACTCAATTTATCCCACACTATATAACTTGGTATTGTCCTAAAGAATTTTTATTAAGCAGACGATGCAAGTCTCAGTGTATAAACCACGGGCGGTACTGTGCTCCGGACCCTGAGCAAGATTTCAATAAAGGGTATGATGGCAAAGATGTTGTTGTTCAGAACTTACGCCAAGCTTGCTTCTTTAAAGTGGCGAATGAAAGTGGAAGACCTTGGCAATGGTGGGATTATGTGACCGACTTTTCAATCCGTTGCCCCATGAAAGAGAAAAAATACACAGAAGAATGCTCGGATGAAGTTATTAAATCTCTTGGTGTTGATCTGAAGAAGATAAAAGACTGTGTTGGGGATCCTCTTGCTGATGTTGAAAACCCTGTTCTCAAAGCCGAACAAGAAGCACAGATTGGCAAAGAGTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTACAGAGGTAAGTTGTCAAGACCAGCGGTTCTCAAGGCAATATGTGCAGGTTTCCAAGAGACCACTGAACCATCAATTTGCTTAACTCCAGGTCTTCATTTTCCTAACTTTTTGATTTCAAATTTTGACATGGAAACAAACGAGTGTTTGGAAAACAATGGTGGTTGTTGGAAGGAAAAATCATCTAATATTACTGCATGCAGGGACACTTTCCGTGGAAGAGTATGTGTATGCCCTGTTGTAAACAATATTAAGTTTGTTGGCGATGGATATACTCTCTGTGAAGCTTCAGGAACCTTAAGCTGCGAATTCAACAATGGAGGTTGTTGGAAAGCATCCCATGGTGGAAGGCTTTACTCTGCTTGCCATGATGACTATAGAAAAGGTTGCGAGTGTCCGTCAGGGTTCAGAGGTGACGGAGTCCAGTCATGTGAAGATATTGATGAATGCAAAGAAAAGTCGGCCTGCCAGTGTCCACAATGCAAATGCAAAAATACCTTTGGGAGTTATGAGTGCAAGTGCAATAGCGGTTTGCTCTACTCACGAGAAAATGACACGTGTATTGGTAAATATACTTCTTCAGTAGTGAGTATTTGGATGATTATCCTTGTGATGGTCGTTACCCTTTCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGACACTGAGATACGTGCAATTATGGCTCAATACATGCCCTTGGATAATCAACCTCTTATTGTTCCTAATCCTAATCAAGTTCATCATGATATCTAG

Protein sequence

>Msa1111640

MIIKLNLLLLCVLVLFLECCFGRFLVEKNSLRITSPKSLKGSYECAIGNFGVPQYGGTLVGSVVYPNVNQKGCKNFTDFSASFHSMPGNFPTFVLVDRGDCYFTLKAWNAQNGGAAAILVADDREERLITMDTPEEGNVVNDDYIEKINIPSALISKSLGDRIKKALSDGEMVHINLDWREALPHPDDRVEYELWTNSNDECGPKCDNQINFVKSFKGAAQLLEKKGFTQFIPHYITWYCPKEFLLSRRCKSQCINHGRYCAPDPEQDFNKGYDGKDVVVQNLRQACFFKVANESGRPWQWWDYVTDFSIRCPMKEKKYTEECSDEVIKSLGVDLKKIKDCVGDPLADVENPVLKAEQEAQIGKESRGDVTILPTLVINNRQYRGKLSRPAVLKAICAGFQETTEPSICLTPGLHFPNFLISNFDMETNECLENNGGCWKEKSSNITACRDTFRGRVCVCPVVNNIKFVGDGYTLCEASGTLSCEFNNGGCWKASHGGRLYSACHDDYRKGCECPSGFRGDGVQSCEDIDECKEKSACQCPQCKCKNTFGSYECKCNSGLLYSRENDTCIGKYTSSVVSIWMIILVMVVTLSGGYAFYKYRIQRYMDTEIRAIMAQYMPLDNQPLIVPNPNQVHHDI*