Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571480 | XP_003630513.1 | 99.551 | 445 | 2 | 0 | 1 | 445 | 1 | 445 | 0.0 | 934 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571480 | sp|P12459|TBB1_SOYBN | 96.288 | 431 | 16 | 0 | 1 | 431 | 1 | 431 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571480 | G7LHC6 | 99.551 | 445 | 2 | 0 | 1 | 445 | 1 | 445 | 0.0 | 934 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043670 | Msa0571480 | -0.803127 | 4.043553e-49 | -8.615850e-47 |
| Msa0436880 | Msa0571480 | 0.816693 | 4.847383e-52 | -8.615850e-47 |
| Msa0274680 | Msa0571480 | 0.806114 | 9.624608e-50 | -8.615850e-47 |
| Msa0571480 | Msa0574890 | 0.843977 | 1.005587e-58 | -8.615850e-47 |
| Msa0571480 | Msa0660310 | 0.955648 | 1.866876e-113 | -8.615850e-47 |
| Msa0571480 | Msa0930780 | 0.818865 | 1.568558e-52 | -8.615850e-47 |
| Msa0571480 | Msa0968670 | 0.801930 | 7.136088e-49 | -8.615850e-47 |
| Msa0571480 | Msa1114530 | 0.811195 | 7.903677e-51 | -8.615850e-47 |
| Msa0571480 | Msa1175180 | 0.802072 | 6.673509e-49 | -8.615850e-47 |
| Msa0571480 | Msa1219580 | 0.813382 | 2.633688e-51 | -8.615850e-47 |
| Msa0571480 | Msa1232710 | 0.822497 | 2.295227e-53 | -8.615850e-47 |
| Msa0571480 | Msa1306740 | 0.954844 | 1.181564e-112 | -8.615850e-47 |
| Msa0571480 | Msa1307570 | 0.802467 | 5.532585e-49 | -8.615850e-47 |
| Msa0571480 | Msa1313300 | 0.821103 | 4.822771e-53 | -8.615850e-47 |
| Msa0571480 | Msa1323670 | 0.808396 | 3.161780e-50 | -8.615850e-47 |
| Msa0571480 | Msa1358350 | 0.811954 | 5.407385e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571480 | MtrunA17_Chr8g0386781 | 99.551 | 445 | 2 | 0 | 1 | 445 | 1 | 445 | 0.0 | 934 |
| Msa0571480 | MtrunA17_Chr2g0292921 | 92.093 | 430 | 34 | 0 | 1 | 430 | 1 | 430 | 0.0 | 824 |
| Msa0571480 | MtrunA17_Chr7g0255791 | 92.326 | 430 | 33 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| Msa0571480 | MtrunA17_Chr3g0142731 | 92.791 | 430 | 29 | 1 | 1 | 428 | 1 | 430 | 0.0 | 822 |
| Msa0571480 | MtrunA17_Chr4g0051631 | 91.860 | 430 | 35 | 0 | 1 | 430 | 1 | 430 | 0.0 | 821 |
| Msa0571480 | MtrunA17_Chr4g0008401 | 90.698 | 430 | 40 | 0 | 1 | 430 | 1 | 430 | 0.0 | 817 |
| Msa0571480 | MtrunA17_Chr4g0008361 | 90.698 | 430 | 40 | 0 | 1 | 430 | 1 | 430 | 0.0 | 816 |
| Msa0571480 | MtrunA17_Chr1g0203181 | 91.395 | 430 | 37 | 0 | 1 | 430 | 1 | 430 | 0.0 | 816 |
| Msa0571480 | MtrunA17_Chr4g0007371 | 90.509 | 432 | 39 | 1 | 1 | 430 | 1 | 432 | 0.0 | 813 |
| Msa0571480 | MtrunA17_Chr8g0393021 | 88.262 | 443 | 51 | 1 | 1 | 442 | 1 | 443 | 0.0 | 806 |
| Msa0571480 | MtrunA17_Chr8g0378821 | 40.275 | 437 | 245 | 3 | 1 | 424 | 1 | 434 | 1.16e-123 | 367 |
| Msa0571480 | MtrunA17_Chr1g0206881 | 39.514 | 453 | 260 | 3 | 1 | 443 | 1 | 449 | 1.65e-122 | 363 |
| Msa0571480 | MtrunA17_Chr3g0140821 | 39.862 | 434 | 251 | 2 | 1 | 424 | 1 | 434 | 1.23e-121 | 362 |
| Msa0571480 | MtrunA17_Chr7g0253411 | 38.902 | 437 | 251 | 3 | 1 | 424 | 1 | 434 | 7.68e-121 | 359 |
| Msa0571480 | MtrunA17_Chr4g0054511 | 39.817 | 437 | 247 | 3 | 1 | 424 | 1 | 434 | 1.87e-120 | 358 |
| Msa0571480 | MtrunA17_Chr6g0461281 | 38.852 | 453 | 260 | 3 | 1 | 442 | 1 | 447 | 3.07e-119 | 355 |
| Msa0571480 | MtrunA17_Chr2g0300671 | 36.259 | 433 | 265 | 3 | 1 | 425 | 1 | 430 | 1.98e-98 | 301 |
| Msa0571480 | MtrunA17_Chr2g0300491 | 35.619 | 452 | 277 | 5 | 1 | 443 | 1 | 447 | 1.26e-97 | 301 |
| Msa0571480 | MtrunA17_Chr7g0275431 | 34.932 | 438 | 268 | 7 | 2 | 423 | 3 | 439 | 2.10e-96 | 298 |
| Msa0571480 | MtrunA17_Chr3g0109241 | 29.630 | 135 | 87 | 1 | 269 | 395 | 4 | 138 | 9.82e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0571480 | AT5G12250.1 | 91.860 | 430 | 35 | 0 | 1 | 430 | 1 | 430 | 0.0 | 823 |
| Msa0571480 | AT5G62690.1 | 91.628 | 430 | 36 | 0 | 1 | 430 | 1 | 430 | 0.0 | 820 |
| Msa0571480 | AT5G62700.1 | 91.628 | 430 | 36 | 0 | 1 | 430 | 1 | 430 | 0.0 | 820 |
| Msa0571480 | AT5G23860.2 | 91.628 | 430 | 36 | 0 | 1 | 430 | 1 | 430 | 0.0 | 818 |
| Msa0571480 | AT5G23860.1 | 91.628 | 430 | 36 | 0 | 1 | 430 | 1 | 430 | 0.0 | 818 |
| Msa0571480 | AT1G75780.1 | 91.415 | 431 | 36 | 1 | 1 | 430 | 1 | 431 | 0.0 | 818 |
| Msa0571480 | AT2G29550.1 | 91.395 | 430 | 37 | 0 | 1 | 430 | 1 | 430 | 0.0 | 815 |
| Msa0571480 | AT4G20890.1 | 91.355 | 428 | 37 | 0 | 1 | 428 | 1 | 428 | 0.0 | 814 |
| Msa0571480 | AT5G44340.1 | 90.698 | 430 | 40 | 0 | 1 | 430 | 1 | 430 | 0.0 | 814 |
| Msa0571480 | AT1G20010.1 | 90.255 | 431 | 41 | 1 | 1 | 430 | 1 | 431 | 0.0 | 810 |
| Msa0571480 | AT1G64740.1 | 39.817 | 437 | 247 | 3 | 1 | 424 | 1 | 434 | 1.38e-123 | 367 |
| Msa0571480 | AT5G19780.1 | 40.046 | 437 | 246 | 3 | 1 | 424 | 1 | 434 | 1.75e-123 | 367 |
| Msa0571480 | AT5G19770.1 | 40.046 | 437 | 246 | 3 | 1 | 424 | 1 | 434 | 1.75e-123 | 367 |
| Msa0571480 | AT4G14960.2 | 39.862 | 434 | 251 | 2 | 1 | 424 | 1 | 434 | 1.42e-120 | 359 |
| Msa0571480 | AT1G50010.1 | 39.631 | 434 | 252 | 2 | 1 | 424 | 1 | 434 | 1.01e-119 | 357 |
| Msa0571480 | AT1G04820.1 | 39.631 | 434 | 252 | 2 | 1 | 424 | 1 | 434 | 1.01e-119 | 357 |
| Msa0571480 | AT4G14960.1 | 38.333 | 420 | 243 | 4 | 1 | 405 | 1 | 419 | 1.69e-101 | 310 |
| Msa0571480 | AT3G61650.1 | 34.802 | 454 | 279 | 7 | 2 | 439 | 3 | 455 | 6.15e-97 | 299 |
| Msa0571480 | AT5G05620.1 | 35.388 | 438 | 266 | 7 | 2 | 423 | 3 | 439 | 7.96e-97 | 299 |
Find 105 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGACACAACATTATTTA+AGG | 0.115881 | 4_1:-74110824 | Msa0571480:three_prime_UTR |
| GTCGATGTCTTCGACATTTA+TGG | 0.180721 | 4_1:-74111089 | Msa0571480:CDS |
| AAAATGGAGCTGGTAATAAT+TGG | 0.203839 | 4_1:-74113320 | Msa0571480:CDS |
| ATCAAATTGGAGGAAAGTTT+TGG | 0.229733 | 4_1:-74113560 | Msa0571480:CDS |
| AACTTTGTGTTTGGACAAAA+TGG | 0.233944 | 4_1:-74113336 | Msa0571480:CDS |
| ACACTTGATTTCACATTGTT+TGG | 0.262813 | 4_1:+74111136 | None:intergenic |
| GGGGAATTCGACATCTATTC+AGG | 0.279124 | 4_1:-74111068 | Msa0571480:CDS |
| CACATTTGCTGTGTGAGTTC+TGG | 0.291813 | 4_1:+74111313 | None:intergenic |
| TGTCCAAACACAAAGTTATC+AGG | 0.298095 | 4_1:+74113342 | None:intergenic |
| AGGTACAATAAAATACAAAA+AGG | 0.318152 | 4_1:+74113738 | None:intergenic |
| ACATGTTGCCTTCGATTTCC+TGG | 0.324939 | 4_1:-74111463 | Msa0571480:CDS |
| TTGAGAACCTCTTGATGTTA+AGG | 0.349935 | 4_1:+74111357 | None:intergenic |
| GGTCAATGTGGAAATCAAAT+TGG | 0.350835 | 4_1:-74113573 | Msa0571480:CDS |
| AGGCCTGATAACTTTGTGTT+TGG | 0.357278 | 4_1:-74113345 | Msa0571480:CDS |
| CATTCGCTTGGAGGTGGAAC+TGG | 0.363770 | 4_1:-74111917 | Msa0571480:CDS |
| TACTGTTATGTTTAAGAGAA+AGG | 0.366259 | 4_1:-74111017 | Msa0571480:CDS |
| GCCAACTCAACTCTGATCTT+AGG | 0.372257 | 4_1:-74111441 | Msa0571480:CDS |
| CAAGAACTCGTCTTACTTTG+TGG | 0.372832 | 4_1:-74111167 | Msa0571480:CDS |
| AAAGTCAACATCATTCTATC+TGG | 0.375155 | 4_1:+74111848 | None:intergenic |
| TGGATACTCTTCTCTGATCT+TGG | 0.375902 | 4_1:+74111868 | None:intergenic |
| GGAAATGTTTAGGCGTGTTT+CGG | 0.380130 | 4_1:-74111047 | Msa0571480:CDS |
| ACCATGGACAGTTTGCGTTC+TGG | 0.381939 | 4_1:-74113387 | Msa0571480:CDS |
| GTTTGTGATATTCCGCCAAC+AGG | 0.382753 | 4_1:-74111115 | Msa0571480:CDS |
| TGAGAACCTCTTGATGTTAA+GGG | 0.384725 | 4_1:+74111358 | None:intergenic |
| CAAGTTCAAGTTGGAATGAA+TGG | 0.389774 | 4_1:+74113689 | None:intergenic |
| TCGATGTCTTCGACATTTAT+GGG | 0.391069 | 4_1:-74111088 | Msa0571480:CDS |
| CATCTATTCAGGAAATGTTT+AGG | 0.391950 | 4_1:-74111057 | Msa0571480:CDS |
| AGTTTGCGTTCTGGTCCATT+TGG | 0.400891 | 4_1:-74113378 | Msa0571480:CDS |
| TGTTCCTAGAGCTGTTCTAA+TGG | 0.402683 | 4_1:-74113424 | Msa0571480:CDS |
| CTTGGAGGTGGAACTGGATC+AGG | 0.406313 | 4_1:-74111911 | Msa0571480:CDS |
| CAAATTTGTCATTCGCTTGG+AGG | 0.423709 | 4_1:-74111926 | Msa0571480:CDS |
| CTCAGTGTTCCCTTCACCAA+AGG | 0.429890 | 4_1:-74111825 | Msa0571480:CDS |
| GATGATAATATTGATATAAT+CGG | 0.431860 | 4_1:+74113766 | None:intergenic |
| TGAGAGTAATATGAATGATT+TGG | 0.437777 | 4_1:-74110939 | Msa0571480:CDS |
| TCATTGTTGTTGATATCAAA+TGG | 0.437987 | 4_1:+74111494 | None:intergenic |
| AAATGGAGCTGGTAATAATT+GGG | 0.455480 | 4_1:-74113319 | Msa0571480:CDS |
| ATGGAAATGAAGGAATGAAT+AGG | 0.458875 | 4_1:+74113708 | None:intergenic |
| GAACATGGGATAGATCCTTC+AGG | 0.466390 | 4_1:-74113522 | Msa0571480:CDS |
| AACAGAGAGAGTTGCATTGT+AGG | 0.476137 | 4_1:+74111781 | None:intergenic |
| TGTCCATGGTACCTGGTTCA+AGG | 0.476857 | 4_1:+74113400 | None:intergenic |
| CAGCAATATCAAGATGCTGC+TGG | 0.478321 | 4_1:-74110905 | Msa0571480:CDS |
| ACTCGTCTTACTTTGTGGAA+TGG | 0.479530 | 4_1:-74111162 | Msa0571480:CDS |
| CGCAAACTGTCCATGGTACC+TGG | 0.481937 | 4_1:+74113393 | None:intergenic |
| GTTGGAATGAATGGAAATGA+AGG | 0.482157 | 4_1:+74113698 | None:intergenic |
| ATTTGTCATTCGCTTGGAGG+TGG | 0.482876 | 4_1:-74111923 | Msa0571480:CDS |
| CATTCACTCTCTCAAGTTGA+AGG | 0.484150 | 4_1:+74113478 | None:intergenic |
| TCCTAAGATCAGAGTTGAGT+TGG | 0.484588 | 4_1:+74111440 | None:intergenic |
| TTTCAAATTTGTCATTCGCT+TGG | 0.487407 | 4_1:-74111929 | Msa0571480:CDS |
| AGATCAGAGTTGAGTTGGCC+AGG | 0.492155 | 4_1:+74111445 | None:intergenic |
| ACCACGGTATCAGAAACCTT+TGG | 0.497655 | 4_1:+74111809 | None:intergenic |
| GTTAGATACCTACCATGTCT+TGG | 0.498617 | 4_1:+74111259 | None:intergenic |
| ACCAAAGGTTTCTGATACCG+TGG | 0.501560 | 4_1:-74111810 | Msa0571480:CDS |
| GAATTAGATCAAGTTCAAGT+TGG | 0.501919 | 4_1:+74113680 | None:intergenic |
| GGTGGAACTGGATCAGGAAT+GGG | 0.503857 | 4_1:-74111905 | Msa0571480:CDS |
| TTGGTATACTGCTGAAGGTA+TGG | 0.508640 | 4_1:-74110984 | Msa0571480:CDS |
| GCTGGTAATAATTGGGCTAA+AGG | 0.511964 | 4_1:-74113312 | Msa0571480:CDS |
| CAGAACTCACACAGCAAATG+TGG | 0.515042 | 4_1:-74111312 | Msa0571480:CDS |
| ACAGAGAGAGTTGCATTGTA+GGG | 0.519248 | 4_1:+74111782 | None:intergenic |
| TTGCATTGGTATACTGCTGA+AGG | 0.520097 | 4_1:-74110989 | Msa0571480:CDS |
| AGGTGGAACTGGATCAGGAA+TGG | 0.523254 | 4_1:-74111906 | Msa0571480:CDS |
| GTAGACGTGGGAAAGGGATG+AGG | 0.527644 | 4_1:+74111404 | None:intergenic |
| GTTCTAATGGACCTTGAACC+AGG | 0.529290 | 4_1:-74113411 | Msa0571480:CDS |
| AGAAGGTGAGTTTGATGAAG+AGG | 0.531082 | 4_1:-74110876 | Msa0571480:CDS |
| GATCCTTCAGGAAGTTATGT+AGG | 0.538806 | 4_1:-74113510 | Msa0571480:CDS |
| GTTTGATGAAGAGGATGAAG+AGG | 0.539736 | 4_1:-74110867 | Msa0571480:CDS |
| TGCTGAAGGTATGGATGAGA+TGG | 0.544333 | 4_1:-74110975 | Msa0571480:CDS |
| ATTGACCTGCTTGTACATGA+AGG | 0.549639 | 4_1:+74113589 | None:intergenic |
| GTGTTTGGACAAAATGGAGC+TGG | 0.552919 | 4_1:-74113330 | Msa0571480:CDS |
| AGGTCCATTAGAACAGCTCT+AGG | 0.555093 | 4_1:+74113420 | None:intergenic |
| ATATCAAGATGCTGCTGGAG+TGG | 0.555240 | 4_1:-74110900 | Msa0571480:CDS |
| GAAATCCTTCATGTACAAGC+AGG | 0.558579 | 4_1:-74113594 | Msa0571480:CDS |
| CGATGTCTTCGACATTTATG+GGG | 0.567518 | 4_1:-74111087 | Msa0571480:CDS |
| GTGTCAAAGTCATTGCAACT+AGG | 0.573104 | 4_1:+74110838 | None:intergenic |
| ATGCATGGTTCTTGATAATG+AGG | 0.575426 | 4_1:-74111732 | Msa0571480:CDS |
| TTTGCTCCCTTAACATCAAG+AGG | 0.575576 | 4_1:-74111364 | Msa0571480:CDS |
| ACCAGAACGCAAACTGTCCA+TGG | 0.577628 | 4_1:+74113386 | None:intergenic |
| TATCAGAAACCTTTGGTGAA+GGG | 0.577868 | 4_1:+74111816 | None:intergenic |
| GTATCAGAAACCTTTGGTGA+AGG | 0.578981 | 4_1:+74111815 | None:intergenic |
| CAATGTGGAAATCAAATTGG+AGG | 0.579577 | 4_1:-74113570 | Msa0571480:CDS |
| GAGAATTGTGACTGCTTGCA+AGG | 0.582924 | 4_1:-74113228 | Msa0571480:intron |
| GAGGTTATGTGTGATGAACA+TGG | 0.587045 | 4_1:-74113537 | Msa0571480:CDS |
| TTGATATCAACAACAATGAG+TGG | 0.588382 | 4_1:-74111490 | Msa0571480:CDS |
| GACATCGACAACCCTGTTGG+CGG | 0.590520 | 4_1:+74111103 | None:intergenic |
| GATGCTGCTGGAGTGGAAGA+AGG | 0.601710 | 4_1:-74110893 | Msa0571480:CDS |
| TCTGATCTTGGAAATGAGCA+AGG | 0.607155 | 4_1:+74111880 | None:intergenic |
| TTTCCTACATAACTTCCTGA+AGG | 0.607311 | 4_1:+74113507 | None:intergenic |
| GGACCTTGAACCAGGTACCA+TGG | 0.613180 | 4_1:-74113403 | Msa0571480:CDS |
| TGAAAATGCAGACGAATGCA+TGG | 0.615580 | 4_1:-74111747 | Msa0571480:CDS |
| TGGTAGGTATCTAACAGCCT+CGG | 0.636835 | 4_1:-74111251 | Msa0571480:CDS |
| ACAGCCTCGGCAATGTTCCG+CGG | 0.640517 | 4_1:-74111238 | Msa0571480:CDS |
| TGAGTTGGCCAGGAAATCGA+AGG | 0.641216 | 4_1:+74111455 | None:intergenic |
| TTTGCCGCGGAACATTGCCG+AGG | 0.645424 | 4_1:+74111234 | None:intergenic |
| GAAGACATCGACAACCCTGT+TGG | 0.646308 | 4_1:+74111100 | None:intergenic |
| GCTAAAGGACATTACACTGA+AGG | 0.649556 | 4_1:-74113297 | Msa0571480:CDS |
| AGAACTCACACAGCAAATGT+GGG | 0.657245 | 4_1:-74111311 | Msa0571480:CDS |
| CATGTACAAGCAGGTCAATG+TGG | 0.664189 | 4_1:-74113585 | Msa0571480:CDS |
| AGGTTATGTGTGATGAACAT+GGG | 0.668105 | 4_1:-74113536 | Msa0571480:CDS |
| TTTGTGATATTCCGCCAACA+GGG | 0.672464 | 4_1:-74111114 | Msa0571480:CDS |
| TGCATTGTAGGGTTCCACCA+CGG | 0.684800 | 4_1:+74111793 | None:intergenic |
| TACTACAATGAAGCAAGTGG+TGG | 0.685754 | 4_1:-74113453 | Msa0571480:CDS |
| CTGCTGATCCAAGACATGGT+AGG | 0.688948 | 4_1:-74111267 | Msa0571480:CDS |
| GTGTACTACAATGAAGCAAG+TGG | 0.690095 | 4_1:-74113456 | Msa0571480:CDS |
| GGATGAGATGGAGTTTACTG+AGG | 0.703310 | 4_1:-74110963 | Msa0571480:CDS |
| AAAGGTTTCTGATACCGTGG+TGG | 0.730334 | 4_1:-74111807 | Msa0571480:CDS |
| TGTGCTGCTGATCCAAGACA+TGG | 0.750746 | 4_1:-74111271 | Msa0571480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATTTTTTTATTTTTA+GGG | + | chr4_1:74112115-74112134 | None:intergenic | 0.0% |
| !!! | GTATATTCATTTTTTTTAAA+TGG | + | chr4_1:74111687-74111706 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGAG+AGG | + | chr4_1:74112382-74112401 | None:intergenic | 10.0% |
| !! | GATGATAATATTGATATAAT+CGG | + | chr4_1:74110792-74110811 | None:intergenic | 15.0% |
| !! | AAGAAAATAAAAAAGACTAT+AGG | + | chr4_1:74110917-74110936 | None:intergenic | 15.0% |
| !! | AAAAAGTTTAAATAAGTATC+TGG | - | chr4_1:74111440-74111459 | Msa0571480:CDS | 15.0% |
| !! | CTAAAAACAATATATTTATG+AGG | + | chr4_1:74111475-74111494 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTAAATGGGTAAA+AGG | + | chr4_1:74111679-74111698 | None:intergenic | 15.0% |
| !! | AATATATATTACAACATATC+AGG | + | chr4_1:74111758-74111777 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATTTTTAGGGA+AGG | + | chr4_1:74112111-74112130 | None:intergenic | 15.0% |
| !!! | AGGTTAAATATTATTTTGTT+AGG | + | chr4_1:74112491-74112510 | None:intergenic | 15.0% |
| !! | AATAAAATACAAAAAGGGAT+AGG | + | chr4_1:74110814-74110833 | None:intergenic | 20.0% |
| !! | GGTACAATAAAATACAAAAA+GGG | + | chr4_1:74110819-74110838 | None:intergenic | 20.0% |
| !! | AGGTACAATAAAATACAAAA+AGG | + | chr4_1:74110820-74110839 | None:intergenic | 20.0% |
| !!! | ATTTATTTTATTCTAGTTCG+TGG | - | chr4_1:74111508-74111527 | Msa0571480:CDS | 20.0% |
| !!! | CATTTTATAATTATCATCGA+GGG | + | chr4_1:74111623-74111642 | None:intergenic | 20.0% |
| !!! | TCATTTTATAATTATCATCG+AGG | + | chr4_1:74111624-74111643 | None:intergenic | 20.0% |
| !! | CCTTGCAAATTTAATTATAT+TGG | + | chr4_1:74111849-74111868 | None:intergenic | 20.0% |
| !! | CCAATATAATTAAATTTGCA+AGG | - | chr4_1:74111846-74111865 | Msa0571480:CDS | 20.0% |
| !!! | GTTCTTAAGTTATTTTTAGT+AGG | + | chr4_1:74112319-74112338 | None:intergenic | 20.0% |
| !! | AACTTAAGAACATAAAACAT+TGG | - | chr4_1:74112328-74112347 | Msa0571480:intron | 20.0% |
| !!! | ACATTATTTAAGGTTCTTTT+TGG | - | chr4_1:74113741-74113760 | Msa0571480:five_prime_UTR | 20.0% |
| ! | GTCCATTTGGAAAAATATTT+AGG | - | chr4_1:74111190-74111209 | Msa0571480:CDS | 25.0% |
| ! | GTGAAGTGATGAATAAAATA+AGG | + | chr4_1:74111358-74111377 | None:intergenic | 25.0% |
| !! | ATTTTATTCATCACTTCACT+CGG | - | chr4_1:74111359-74111378 | Msa0571480:CDS | 25.0% |
| !!! | TTGTTTTGCATATGAATAGA+CGG | - | chr4_1:74111410-74111429 | Msa0571480:CDS | 25.0% |
| !! | ATTTGAACTTTGTACTTTTG+AGG | + | chr4_1:74111600-74111619 | None:intergenic | 25.0% |
| !! | AATATACACTGTTTTGCTTT+TGG | - | chr4_1:74111700-74111719 | Msa0571480:CDS | 25.0% |
| ! | GTCATTTATCTCACTTAAAT+TGG | - | chr4_1:74111781-74111800 | Msa0571480:CDS | 25.0% |
| ! | ATTTATCTCACTTAAATTGG+AGG | - | chr4_1:74111784-74111803 | Msa0571480:CDS | 25.0% |
| ! | TTTATCTCACTTAAATTGGA+GGG | - | chr4_1:74111785-74111804 | Msa0571480:CDS | 25.0% |
| !!! | TCAATCATGTTGTTTTGTTT+TGG | + | chr4_1:74111873-74111892 | None:intergenic | 25.0% |
| !!! | TGTGGCAGAATTTTTTTTAA+AGG | + | chr4_1:74111941-74111960 | None:intergenic | 25.0% |
| !! | AAGTATGGATTAAACTTAGA+AGG | + | chr4_1:74112069-74112088 | None:intergenic | 25.0% |
| ! | ATGTAAACATAATGTTGATG+TGG | - | chr4_1:74112181-74112200 | Msa0571480:intron | 25.0% |
| ! | AAATAATTAAATGTTGAGCC+AGG | + | chr4_1:74112262-74112281 | None:intergenic | 25.0% |
| ! | AGTAGTTCTTAAATCATAGT+TGG | - | chr4_1:74112283-74112302 | Msa0571480:intron | 25.0% |
| !!! | TTAAATCATAGTTGGTAACT+TGG | - | chr4_1:74112291-74112310 | Msa0571480:intron | 25.0% |
| !!! | TAAATCATAGTTGGTAACTT+GGG | - | chr4_1:74112292-74112311 | Msa0571480:intron | 25.0% |
| ! | AAAAAAAAAAATCCTTGCGT+TGG | - | chr4_1:74112391-74112410 | Msa0571480:intron | 25.0% |
| ! | GATTAAATATGTTAGTGTGA+AGG | + | chr4_1:74112463-74112482 | None:intergenic | 25.0% |
| ! | ACCTTAACTTATATCAAGAA+TGG | - | chr4_1:74112507-74112526 | Msa0571480:intron | 25.0% |
| ! | ACCATTCTTGATATAAGTTA+AGG | + | chr4_1:74112511-74112530 | None:intergenic | 25.0% |
| ! | AATAATGACCATAACTAGAA+TGG | - | chr4_1:74112581-74112600 | Msa0571480:intron | 25.0% |
| !! | AACAATTTCCATTCTAGTTA+TGG | + | chr4_1:74112592-74112611 | None:intergenic | 25.0% |
| !! | TCATTGTTGTTGATATCAAA+TGG | + | chr4_1:74113064-74113083 | None:intergenic | 25.0% |
| ! | TACTGTTATGTTTAAGAGAA+AGG | - | chr4_1:74113538-74113557 | Msa0571480:CDS | 25.0% |
| ! | TGAGAGTAATATGAATGATT+TGG | - | chr4_1:74113616-74113635 | Msa0571480:exon | 25.0% |
| ! | CTTTGACACAACATTATTTA+AGG | - | chr4_1:74113731-74113750 | Msa0571480:five_prime_UTR | 25.0% |
| ATGGAAATGAAGGAATGAAT+AGG | + | chr4_1:74110850-74110869 | None:intergenic | 30.0% | |
| GAATTAGATCAAGTTCAAGT+TGG | + | chr4_1:74110878-74110897 | None:intergenic | 30.0% | |
| ! | ATCAAATTGGAGGAAAGTTT+TGG | - | chr4_1:74110995-74111014 | Msa0571480:CDS | 30.0% |
| ! | TCAAATTGGAGGAAAGTTTT+GGG | - | chr4_1:74110996-74111015 | Msa0571480:CDS | 30.0% |
| ! | GGCCTAAATATTTTTCCAAA+TGG | + | chr4_1:74111195-74111214 | None:intergenic | 30.0% |
| AACTTTGTGTTTGGACAAAA+TGG | - | chr4_1:74111219-74111238 | Msa0571480:CDS | 30.0% | |
| AAAATGGAGCTGGTAATAAT+TGG | - | chr4_1:74111235-74111254 | Msa0571480:CDS | 30.0% | |
| AAATGGAGCTGGTAATAATT+GGG | - | chr4_1:74111236-74111255 | Msa0571480:CDS | 30.0% | |
| AAATACATCGTTCTCTACAT+TGG | - | chr4_1:74111532-74111551 | Msa0571480:intron | 30.0% | |
| GGTGACTATGATTTAATCTT+TGG | + | chr4_1:74112003-74112022 | None:intergenic | 30.0% | |
| AATCGAGGTTATATGTTTAG+TGG | - | chr4_1:74112042-74112061 | Msa0571480:intron | 30.0% | |
| ACAAACGACAGGAAAAATTT+GGG | + | chr4_1:74112140-74112159 | None:intergenic | 30.0% | |
| TACAAACGACAGGAAAAATT+TGG | + | chr4_1:74112141-74112160 | None:intergenic | 30.0% | |
| GTGAACCTATTTAAATGACT+TGG | - | chr4_1:74112212-74112231 | Msa0571480:intron | 30.0% | |
| !! | AAATCATAGTTGGTAACTTG+GGG | - | chr4_1:74112293-74112312 | Msa0571480:intron | 30.0% |
| TGTGAAGGTTTCTTGTAATA+AGG | + | chr4_1:74112448-74112467 | None:intergenic | 30.0% | |
| ATGGTGACATGAACAAAATT+TGG | - | chr4_1:74112526-74112545 | Msa0571480:intron | 30.0% | |
| TTTCAAATTTGTCATTCGCT+TGG | - | chr4_1:74112626-74112645 | Msa0571480:intron | 30.0% | |
| AAAGTCAACATCATTCTATC+TGG | + | chr4_1:74112710-74112729 | None:intergenic | 30.0% | |
| TGATGAAAACACTTACAACT+TGG | + | chr4_1:74112890-74112909 | None:intergenic | 30.0% | |
| !! | TACTGACACTCATTTTGAAA+CGG | - | chr4_1:74112974-74112993 | Msa0571480:intron | 30.0% |
| !!! | TTTTGTTGTTTTCATGCAGT+TGG | - | chr4_1:74113029-74113048 | Msa0571480:intron | 30.0% |
| TTGATATCAACAACAATGAG+TGG | - | chr4_1:74113065-74113084 | Msa0571480:intron | 30.0% | |
| ACACTTGATTTCACATTGTT+TGG | + | chr4_1:74113422-74113441 | None:intergenic | 30.0% | |
| CATCTATTCAGGAAATGTTT+AGG | - | chr4_1:74113498-74113517 | Msa0571480:CDS | 30.0% | |
| ! | TTTTTGGATCATTCATGTCA+TGG | - | chr4_1:74113757-74113776 | Msa0571480:five_prime_UTR | 30.0% |
| ! | AGGAATGAATAGGCTTTTGT+AGG | + | chr4_1:74110840-74110859 | None:intergenic | 35.0% |
| GTTGGAATGAATGGAAATGA+AGG | + | chr4_1:74110860-74110879 | None:intergenic | 35.0% | |
| !! | CAAGTTCAAGTTGGAATGAA+TGG | + | chr4_1:74110869-74110888 | None:intergenic | 35.0% |
| GGTCAATGTGGAAATCAAAT+TGG | - | chr4_1:74110982-74111001 | Msa0571480:CDS | 35.0% | |
| CAATGTGGAAATCAAATTGG+AGG | - | chr4_1:74110985-74111004 | Msa0571480:CDS | 35.0% | |
| AGGTTATGTGTGATGAACAT+GGG | - | chr4_1:74111019-74111038 | Msa0571480:CDS | 35.0% | |
| TTTCCTACATAACTTCCTGA+AGG | + | chr4_1:74111051-74111070 | None:intergenic | 35.0% | |
| TGTCCAAACACAAAGTTATC+AGG | + | chr4_1:74111216-74111235 | None:intergenic | 35.0% | |
| TAAATAAGTATCTGGTCGTC+TGG | - | chr4_1:74111448-74111467 | Msa0571480:CDS | 35.0% | |
| AACATGATTGAGCAGCAAAA+CGG | - | chr4_1:74111882-74111901 | Msa0571480:CDS | 35.0% | |
| TTGTAACCATGTTGCAACTT+AGG | + | chr4_1:74111968-74111987 | None:intergenic | 35.0% | |
| TTGCAACATGGTTACAATTG+AGG | - | chr4_1:74111971-74111990 | Msa0571480:intron | 35.0% | |
| AGACTAATTGTACAAACGAC+AGG | + | chr4_1:74112151-74112170 | None:intergenic | 35.0% | |
| GTCATTTAAATAGGTTCACG+TGG | + | chr4_1:74112211-74112230 | None:intergenic | 35.0% | |
| TTTGGAAACATGCATACGTA+TGG | - | chr4_1:74112544-74112563 | Msa0571480:intron | 35.0% | |
| GGAAATTGTTTGATGTTGAC+AGG | - | chr4_1:74112602-74112621 | Msa0571480:intron | 35.0% | |
| TATCAGAAACCTTTGGTGAA+GGG | + | chr4_1:74112742-74112761 | None:intergenic | 35.0% | |
| !! | ATGCATGGTTCTTGATAATG+AGG | - | chr4_1:74112823-74112842 | Msa0571480:intron | 35.0% |
| AAAAATGTAGACGTGGGAAA+GGG | + | chr4_1:74113160-74113179 | None:intergenic | 35.0% | |
| AAAAAATGTAGACGTGGGAA+AGG | + | chr4_1:74113161-74113180 | None:intergenic | 35.0% | |
| CCATGAAAAAATGTAGACGT+GGG | + | chr4_1:74113166-74113185 | None:intergenic | 35.0% | |
| ACCATGAAAAAATGTAGACG+TGG | + | chr4_1:74113167-74113186 | None:intergenic | 35.0% | |
| !!! | CGTCTACATTTTTTCATGGT+TGG | - | chr4_1:74113167-74113186 | Msa0571480:intron | 35.0% |
| TGAGAACCTCTTGATGTTAA+GGG | + | chr4_1:74113200-74113219 | None:intergenic | 35.0% | |
| TTGAGAACCTCTTGATGTTA+AGG | + | chr4_1:74113201-74113220 | None:intergenic | 35.0% | |
| TCGATGTCTTCGACATTTAT+GGG | - | chr4_1:74113467-74113486 | Msa0571480:CDS | 35.0% | |
| !!! | AGAGAAAGGCATTTTTGCAT+TGG | - | chr4_1:74113552-74113571 | Msa0571480:CDS | 35.0% |
| GAAATCCTTCATGTACAAGC+AGG | - | chr4_1:74110961-74110980 | Msa0571480:CDS | 40.0% | |
| ATTGACCTGCTTGTACATGA+AGG | + | chr4_1:74110969-74110988 | None:intergenic | 40.0% | |
| !!! | AATTGGAGGAAAGTTTTGGG+AGG | - | chr4_1:74110999-74111018 | Msa0571480:CDS | 40.0% |
| GAGGTTATGTGTGATGAACA+TGG | - | chr4_1:74111018-74111037 | Msa0571480:CDS | 40.0% | |
| GATCCTTCAGGAAGTTATGT+AGG | - | chr4_1:74111045-74111064 | Msa0571480:CDS | 40.0% | |
| !! | CATTCACTCTCTCAAGTTGA+AGG | + | chr4_1:74111080-74111099 | None:intergenic | 40.0% |
| GTGTACTACAATGAAGCAAG+TGG | - | chr4_1:74111099-74111118 | Msa0571480:CDS | 40.0% | |
| TACTACAATGAAGCAAGTGG+TGG | - | chr4_1:74111102-74111121 | Msa0571480:CDS | 40.0% | |
| TGTTCCTAGAGCTGTTCTAA+TGG | - | chr4_1:74111131-74111150 | Msa0571480:CDS | 40.0% | |
| AGGCCTGATAACTTTGTGTT+TGG | - | chr4_1:74111210-74111229 | Msa0571480:CDS | 40.0% | |
| GCTGGTAATAATTGGGCTAA+AGG | - | chr4_1:74111243-74111262 | Msa0571480:CDS | 40.0% | |
| GCTAAAGGACATTACACTGA+AGG | - | chr4_1:74111258-74111277 | Msa0571480:CDS | 40.0% | |
| TACATCGTTCTCTACATTGG+AGG | - | chr4_1:74111535-74111554 | Msa0571480:intron | 40.0% | |
| ! | AGGTGATGGTGATAACTTAG+TGG | - | chr4_1:74111555-74111574 | Msa0571480:intron | 40.0% |
| ACATGATTGAGCAGCAAAAC+GGG | - | chr4_1:74111883-74111902 | Msa0571480:CDS | 40.0% | |
| TGTTGCAACTTAGGTCTATG+TGG | + | chr4_1:74111959-74111978 | None:intergenic | 40.0% | |
| CATAGACCTAAGTTGCAACA+TGG | - | chr4_1:74111959-74111978 | Msa0571480:intron | 40.0% | |
| ATAGTCACCATCGTTGCATA+CGG | - | chr4_1:74112014-74112033 | Msa0571480:intron | 40.0% | |
| GGAGGCCAAGTCATTTAAAT+AGG | + | chr4_1:74112220-74112239 | None:intergenic | 40.0% | |
| TTGAGAGGTCTAATGCAAGA+AGG | + | chr4_1:74112367-74112386 | None:intergenic | 40.0% | |
| CAAATTTGTCATTCGCTTGG+AGG | - | chr4_1:74112629-74112648 | Msa0571480:intron | 40.0% | |
| TCTGATCTTGGAAATGAGCA+AGG | + | chr4_1:74112678-74112697 | None:intergenic | 40.0% | |
| TGGATACTCTTCTCTGATCT+TGG | + | chr4_1:74112690-74112709 | None:intergenic | 40.0% | |
| GTATCAGAAACCTTTGGTGA+AGG | + | chr4_1:74112743-74112762 | None:intergenic | 40.0% | |
| ACAGAGAGAGTTGCATTGTA+GGG | + | chr4_1:74112776-74112795 | None:intergenic | 40.0% | |
| AACAGAGAGAGTTGCATTGT+AGG | + | chr4_1:74112777-74112796 | None:intergenic | 40.0% | |
| TGAAAATGCAGACGAATGCA+TGG | - | chr4_1:74112808-74112827 | Msa0571480:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr4_1:74112978-74112997 | Msa0571480:intron | 40.0% |
| TCCTAAGATCAGAGTTGAGT+TGG | + | chr4_1:74113118-74113137 | None:intergenic | 40.0% | |
| !!! | CCCACGTCTACATTTTTTCA+TGG | - | chr4_1:74113163-74113182 | Msa0571480:intron | 40.0% |
| TTTGCTCCCTTAACATCAAG+AGG | - | chr4_1:74113191-74113210 | Msa0571480:intron | 40.0% | |
| AGAACTCACACAGCAAATGT+GGG | - | chr4_1:74113244-74113263 | Msa0571480:CDS | 40.0% | |
| GTTAGATACCTACCATGTCT+TGG | + | chr4_1:74113299-74113318 | None:intergenic | 40.0% | |
| CAAGAACTCGTCTTACTTTG+TGG | - | chr4_1:74113388-74113407 | Msa0571480:CDS | 40.0% | |
| ACTCGTCTTACTTTGTGGAA+TGG | - | chr4_1:74113393-74113412 | Msa0571480:CDS | 40.0% | |
| TTTGTGATATTCCGCCAACA+GGG | - | chr4_1:74113441-74113460 | Msa0571480:CDS | 40.0% | |
| GTCGATGTCTTCGACATTTA+TGG | - | chr4_1:74113466-74113485 | Msa0571480:CDS | 40.0% | |
| CGATGTCTTCGACATTTATG+GGG | - | chr4_1:74113468-74113487 | Msa0571480:CDS | 40.0% | |
| GGAAATGTTTAGGCGTGTTT+CGG | - | chr4_1:74113508-74113527 | Msa0571480:CDS | 40.0% | |
| ! | TTGCATTGGTATACTGCTGA+AGG | - | chr4_1:74113566-74113585 | Msa0571480:CDS | 40.0% |
| TTGGTATACTGCTGAAGGTA+TGG | - | chr4_1:74113571-74113590 | Msa0571480:CDS | 40.0% | |
| AGAAGGTGAGTTTGATGAAG+AGG | - | chr4_1:74113679-74113698 | Msa0571480:five_prime_UTR | 40.0% | |
| GTTTGATGAAGAGGATGAAG+AGG | - | chr4_1:74113688-74113707 | Msa0571480:five_prime_UTR | 40.0% | |
| GTGTCAAAGTCATTGCAACT+AGG | + | chr4_1:74113720-74113739 | None:intergenic | 40.0% | |
| CATGTACAAGCAGGTCAATG+TGG | - | chr4_1:74110970-74110989 | Msa0571480:CDS | 45.0% | |
| GAACATGGGATAGATCCTTC+AGG | - | chr4_1:74111033-74111052 | Msa0571480:CDS | 45.0% | |
| AGGTCCATTAGAACAGCTCT+AGG | + | chr4_1:74111138-74111157 | None:intergenic | 45.0% | |
| ! | GTTCTAATGGACCTTGAACC+AGG | - | chr4_1:74111144-74111163 | Msa0571480:CDS | 45.0% |
| AGTTTGCGTTCTGGTCCATT+TGG | - | chr4_1:74111177-74111196 | Msa0571480:CDS | 45.0% | |
| GTGTTTGGACAAAATGGAGC+TGG | - | chr4_1:74111225-74111244 | Msa0571480:CDS | 45.0% | |
| GAGAATTGTGACTGCTTGCA+AGG | - | chr4_1:74111327-74111346 | Msa0571480:CDS | 45.0% | |
| TCATCACTTCACTCGGTTCT+TGG | - | chr4_1:74111366-74111385 | Msa0571480:CDS | 45.0% | |
| GTTCTCTACATTGGAGGTGA+TGG | - | chr4_1:74111541-74111560 | Msa0571480:intron | 45.0% | |
| CATGATTGAGCAGCAAAACG+GGG | - | chr4_1:74111884-74111903 | Msa0571480:CDS | 45.0% | |
| TTCTCTACCGTATGCAACGA+TGG | + | chr4_1:74112024-74112043 | None:intergenic | 45.0% | |
| TTGCATACGGTAGAGAATCG+AGG | - | chr4_1:74112027-74112046 | Msa0571480:intron | 45.0% | |
| ! | TAAATGACTTGGCCTCCATG+TGG | - | chr4_1:74112223-74112242 | Msa0571480:intron | 45.0% |
| ATGTTGAGCCAGGTAACATG+TGG | + | chr4_1:74112252-74112271 | None:intergenic | 45.0% | |
| !! | CAAAAAGCATCTCCAACGCA+AGG | + | chr4_1:74112406-74112425 | None:intergenic | 45.0% |
| ! | CTTGCGTTGGAGATGCTTTT+TGG | - | chr4_1:74112404-74112423 | Msa0571480:intron | 45.0% |
| ! | CATGCATACGTATGGTGTCA+TGG | - | chr4_1:74112552-74112571 | Msa0571480:intron | 45.0% |
| ATTTGTCATTCGCTTGGAGG+TGG | - | chr4_1:74112632-74112651 | Msa0571480:intron | 45.0% | |
| ACCAAAGGTTTCTGATACCG+TGG | - | chr4_1:74112745-74112764 | Msa0571480:intron | 45.0% | |
| ACCACGGTATCAGAAACCTT+TGG | + | chr4_1:74112749-74112768 | None:intergenic | 45.0% | |
| AAAGGTTTCTGATACCGTGG+TGG | - | chr4_1:74112748-74112767 | Msa0571480:intron | 45.0% | |
| ACATGTTGCCTTCGATTTCC+TGG | - | chr4_1:74113092-74113111 | Msa0571480:intron | 45.0% | |
| GCCAACTCAACTCTGATCTT+AGG | - | chr4_1:74113114-74113133 | Msa0571480:intron | 45.0% | |
| !! | CACATTTGCTGTGTGAGTTC+TGG | + | chr4_1:74113245-74113264 | None:intergenic | 45.0% |
| CAGAACTCACACAGCAAATG+TGG | - | chr4_1:74113243-74113262 | Msa0571480:CDS | 45.0% | |
| TGGTAGGTATCTAACAGCCT+CGG | - | chr4_1:74113304-74113323 | Msa0571480:CDS | 45.0% | |
| ! | CTTTTGTGCTCATTTTGCCG+CGG | + | chr4_1:74113337-74113356 | None:intergenic | 45.0% |
| GTTTGTGATATTCCGCCAAC+AGG | - | chr4_1:74113440-74113459 | Msa0571480:CDS | 45.0% | |
| GGGGAATTCGACATCTATTC+AGG | - | chr4_1:74113487-74113506 | Msa0571480:CDS | 45.0% | |
| ! | TGCTGAAGGTATGGATGAGA+TGG | - | chr4_1:74113580-74113599 | Msa0571480:CDS | 45.0% |
| GGATGAGATGGAGTTTACTG+AGG | - | chr4_1:74113592-74113611 | Msa0571480:CDS | 45.0% | |
| CAGCAATATCAAGATGCTGC+TGG | - | chr4_1:74113650-74113669 | Msa0571480:five_prime_UTR | 45.0% | |
| ATATCAAGATGCTGCTGGAG+TGG | - | chr4_1:74113655-74113674 | Msa0571480:five_prime_UTR | 45.0% | |
| !!! | TATATTCATTTTTTTTAAAT+GGG | + | chr4_1:74111686-74111705 | None:intergenic | 5.0% |
| !! | AATATTTATTAATTTAAGTA+TGG | + | chr4_1:74112084-74112103 | None:intergenic | 5.0% |
| !!! | CTAAATATTTTTTTATTTTT+AGG | + | chr4_1:74112116-74112135 | None:intergenic | 5.0% |
| TGTCCATGGTACCTGGTTCA+AGG | + | chr4_1:74111158-74111177 | None:intergenic | 50.0% | |
| ACCATGGACAGTTTGCGTTC+TGG | - | chr4_1:74111168-74111187 | Msa0571480:CDS | 50.0% | |
| ACCAGAACGCAAACTGTCCA+TGG | + | chr4_1:74111172-74111191 | None:intergenic | 50.0% | |
| AACATGTGGCTTCCACATGG+AGG | + | chr4_1:74112238-74112257 | None:intergenic | 50.0% | |
| GGTAACATGTGGCTTCCACA+TGG | + | chr4_1:74112241-74112260 | None:intergenic | 50.0% | |
| TGTGGAAGCCACATGTTACC+TGG | - | chr4_1:74112241-74112260 | Msa0571480:intron | 50.0% | |
| AGGTGGAACTGGATCAGGAA+TGG | - | chr4_1:74112649-74112668 | Msa0571480:intron | 50.0% | |
| GGTGGAACTGGATCAGGAAT+GGG | - | chr4_1:74112650-74112669 | Msa0571480:intron | 50.0% | |
| CTCAGTGTTCCCTTCACCAA+AGG | - | chr4_1:74112730-74112749 | Msa0571480:intron | 50.0% | |
| TGCATTGTAGGGTTCCACCA+CGG | + | chr4_1:74112765-74112784 | None:intergenic | 50.0% | |
| ! | TGAGTTGGCCAGGAAATCGA+AGG | + | chr4_1:74113103-74113122 | None:intergenic | 50.0% |
| !! | AGATCAGAGTTGAGTTGGCC+AGG | + | chr4_1:74113113-74113132 | None:intergenic | 50.0% |
| ! | TGTGCTGCTGATCCAAGACA+TGG | - | chr4_1:74113284-74113303 | Msa0571480:CDS | 50.0% |
| CTGCTGATCCAAGACATGGT+AGG | - | chr4_1:74113288-74113307 | Msa0571480:CDS | 50.0% | |
| GAAGACATCGACAACCCTGT+TGG | + | chr4_1:74113458-74113477 | None:intergenic | 50.0% | |
| GGACCTTGAACCAGGTACCA+TGG | - | chr4_1:74111152-74111171 | Msa0571480:CDS | 55.0% | |
| CGCAAACTGTCCATGGTACC+TGG | + | chr4_1:74111165-74111184 | None:intergenic | 55.0% | |
| CATTCGCTTGGAGGTGGAAC+TGG | - | chr4_1:74112638-74112657 | Msa0571480:intron | 55.0% | |
| CTTGGAGGTGGAACTGGATC+AGG | - | chr4_1:74112644-74112663 | Msa0571480:intron | 55.0% | |
| GTAGACGTGGGAAAGGGATG+AGG | + | chr4_1:74113154-74113173 | None:intergenic | 55.0% | |
| GACATCGACAACCCTGTTGG+CGG | + | chr4_1:74113455-74113474 | None:intergenic | 55.0% | |
| GATGCTGCTGGAGTGGAAGA+AGG | - | chr4_1:74113662-74113681 | Msa0571480:five_prime_UTR | 55.0% | |
| ACAGCCTCGGCAATGTTCCG+CGG | - | chr4_1:74113317-74113336 | Msa0571480:CDS | 60.0% | |
| TTTGCCGCGGAACATTGCCG+AGG | + | chr4_1:74113324-74113343 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 74110740 | 74113837 | 74110740 | ID=Msa0571480;Name=Msa0571480 |
| chr4_1 | mRNA | 74110740 | 74113837 | 74110740 | ID=Msa0571480-mRNA-1;Parent=Msa0571480;Name=Msa0571480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=215|1|1|1|1|1|3|116|445 |
| chr4_1 | exon | 74110740 | 74111529 | 74110740 | ID=Msa0571480-mRNA-1:exon:25517;Parent=Msa0571480-mRNA-1 |
| chr4_1 | exon | 74111684 | 74111953 | 74111684 | ID=Msa0571480-mRNA-1:exon:25516;Parent=Msa0571480-mRNA-1 |
| chr4_1 | exon | 74113229 | 74113837 | 74113229 | ID=Msa0571480-mRNA-1:exon:25515;Parent=Msa0571480-mRNA-1 |
| chr4_1 | five_prime_UTR | 74113623 | 74113837 | 74113623 | ID=Msa0571480-mRNA-1:five_prime_utr;Parent=Msa0571480-mRNA-1 |
| chr4_1 | CDS | 74113229 | 74113622 | 74113229 | ID=Msa0571480-mRNA-1:cds;Parent=Msa0571480-mRNA-1 |
| chr4_1 | CDS | 74111684 | 74111953 | 74111684 | ID=Msa0571480-mRNA-1:cds;Parent=Msa0571480-mRNA-1 |
| chr4_1 | CDS | 74110856 | 74111529 | 74110856 | ID=Msa0571480-mRNA-1:cds;Parent=Msa0571480-mRNA-1 |
| chr4_1 | three_prime_UTR | 74110740 | 74110855 | 74110740 | ID=Msa0571480-mRNA-1:three_prime_utr;Parent=Msa0571480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
