Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159760 | XP_003625105.2 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159760 | sp|Q8S0G4|GPDH1_ORYSJ | 86.623 | 456 | 60 | 1 | 1 | 456 | 1 | 455 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159760 | G7KSM3 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043670 | Msa1159760 | -0.808958 | 2.398498e-50 | -8.615850e-47 |
| Msa0092670 | Msa1159760 | -0.809391 | 1.936708e-50 | -8.615850e-47 |
| Msa0092690 | Msa1159760 | -0.807243 | 5.560000e-50 | -8.615850e-47 |
| Msa0092740 | Msa1159760 | -0.807354 | 5.267163e-50 | -8.615850e-47 |
| Msa0663300 | Msa1159760 | 0.805215 | 1.486695e-49 | -8.615850e-47 |
| Msa0180930 | Msa1159760 | 0.803458 | 3.452362e-49 | -8.615850e-47 |
| Msa1034230 | Msa1159760 | 0.831879 | 1.299691e-55 | -8.615850e-47 |
| Msa1114530 | Msa1159760 | 0.844691 | 6.461240e-59 | -8.615850e-47 |
| Msa1122030 | Msa1159760 | 0.824264 | 8.870718e-54 | -8.615850e-47 |
| Msa1159760 | Msa1437460 | 0.801224 | 9.958939e-49 | -8.615850e-47 |
| Msa1159760 | Msa1440260 | -0.810816 | 9.550470e-51 | -8.615850e-47 |
| Msa0930780 | Msa1159760 | 0.804554 | 2.043028e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159760 | MtrunA17_Chr7g0257111 | 99.562 | 457 | 2 | 0 | 1 | 457 | 1 | 457 | 0.0 | 943 |
| Msa1159760 | MtrunA17_Chr4g0020581 | 85.556 | 450 | 65 | 0 | 8 | 457 | 8 | 457 | 0.0 | 807 |
| Msa1159760 | MtrunA17_Chr6g0458181 | 26.859 | 417 | 215 | 18 | 13 | 413 | 14 | 356 | 4.85e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159760 | AT2G41540.3 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1159760 | AT2G41540.1 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1159760 | AT2G41540.4 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1159760 | AT2G41540.2 | 87.202 | 461 | 54 | 1 | 1 | 456 | 1 | 461 | 0.0 | 818 |
| Msa1159760 | AT3G07690.2 | 80.909 | 440 | 84 | 0 | 18 | 457 | 16 | 455 | 0.0 | 759 |
| Msa1159760 | AT3G07690.1 | 79.111 | 450 | 84 | 1 | 18 | 457 | 16 | 465 | 0.0 | 753 |
| Msa1159760 | AT5G40610.1 | 26.521 | 411 | 228 | 18 | 22 | 419 | 39 | 388 | 8.96e-16 | 79.3 |
Find 100 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATGGTGGGAAGTATTT+TGG | 0.125449 | 7_4:-49451615 | Msa1159760:exon |
| AAGAAGTGTTACTCCAATTT+TGG | 0.161566 | 7_4:+49448319 | None:intergenic |
| TTAGGATAAGAATAAGATTT+TGG | 0.174143 | 7_4:+49451831 | None:intergenic |
| CACTACATTGTGGCCAAAAT+TGG | 0.183547 | 7_4:-49448332 | Msa1159760:three_prime_UTR |
| TAGATTTCTGAAGCAATATT+TGG | 0.204065 | 7_4:+49450326 | None:intergenic |
| CCAATACACACAATTCTTAA+TGG | 0.226759 | 7_4:+49451506 | None:intergenic |
| TTCTACAGGCCTTCACTTCT+TGG | 0.227692 | 7_4:-49448545 | Msa1159760:CDS |
| TGACTATTGTTTCCTATATA+TGG | 0.230121 | 7_4:+49448477 | None:intergenic |
| CTTCAGGATGCAATACATTT+AGG | 0.253998 | 7_4:+49449067 | None:intergenic |
| GACAACCACATTTCATTGTA+TGG | 0.268525 | 7_4:-49450232 | Msa1159760:CDS |
| GATGAGTTTAGGAGACTAAT+TGG | 0.269554 | 7_4:-49451545 | Msa1159760:CDS |
| TTCGAAAATCTCACGAGTTT+CGG | 0.269563 | 7_4:+49451121 | None:intergenic |
| ATTTATTCTTGTTACTTGTT+AGG | 0.270482 | 7_4:+49451813 | None:intergenic |
| ACTTATGTGACATTGTTAAA+AGG | 0.274708 | 7_4:-49449406 | Msa1159760:CDS |
| GTACTAGGAAGAACCAAATA+TGG | 0.305967 | 7_4:+49451666 | None:intergenic |
| GATGCTGATATTGTTGTTAA+TGG | 0.309247 | 7_4:-49451155 | Msa1159760:CDS |
| AGGAGAAGCTTGATGAGTTT+AGG | 0.317427 | 7_4:-49451556 | Msa1159760:CDS |
| TTGTAGAGTGTCTTCAAGAT+AGG | 0.319634 | 7_4:+49449012 | None:intergenic |
| CTAATTTGCAAGAAGCTGTT+TGG | 0.326140 | 7_4:-49451178 | Msa1159760:CDS |
| ACAAAGTACAAATCAGAATA+TGG | 0.327356 | 7_4:-49451421 | Msa1159760:CDS |
| GCAATACATTTAGGCTTGAT+TGG | 0.338071 | 7_4:+49449076 | None:intergenic |
| TCATCTCAGAATCATAATAA+TGG | 0.350904 | 7_4:-49451584 | Msa1159760:CDS |
| CAAGTAACAAGAATAAATTT+TGG | 0.355376 | 7_4:-49451808 | Msa1159760:five_prime_UTR |
| TAATTTGCAAGAAGCTGTTT+GGG | 0.364920 | 7_4:-49451177 | Msa1159760:CDS |
| TTAGACAGAGAGATTATAAC+AGG | 0.380435 | 7_4:+49451062 | None:intergenic |
| CTAATGCTGTCACCCATGTC+CGG | 0.388974 | 7_4:+49449337 | None:intergenic |
| GAAGAGCCTGAGAAACTTGC+TGG | 0.392061 | 7_4:-49449445 | Msa1159760:CDS |
| CACAATGTTAGTATATTAAT+AGG | 0.397077 | 7_4:-49451756 | Msa1159760:five_prime_UTR |
| TCGAAGAGATTAGTAAGTAT+TGG | 0.404360 | 7_4:-49451103 | Msa1159760:CDS |
| ATCTCACGAGTTTCGGTTGA+AGG | 0.407631 | 7_4:+49451128 | None:intergenic |
| ATGGAGAACATACTTTATCT+TGG | 0.408674 | 7_4:-49450353 | Msa1159760:CDS |
| TGCTATTCTAAAAGCTTTGA+GGG | 0.411503 | 7_4:-49448621 | Msa1159760:CDS |
| TGTCTAAGAAACTTTGCTAA+AGG | 0.417206 | 7_4:+49450251 | None:intergenic |
| TAGTGGCAAAGGAATGATTC+AGG | 0.421338 | 7_4:-49449317 | Msa1159760:intron |
| AAATGTGAATGTAAGTTGTT+AGG | 0.427959 | 7_4:+49451702 | None:intergenic |
| GTGTATTGGAGCAGGTGCTT+GGG | 0.429380 | 7_4:-49451492 | Msa1159760:CDS |
| GAATCATAATAATGGATTAG+AGG | 0.429843 | 7_4:-49451576 | Msa1159760:CDS |
| ATGCTATTCTAAAAGCTTTG+AGG | 0.430646 | 7_4:-49448622 | Msa1159760:CDS |
| AAGATAGGGCAAAGTTCAAC+AGG | 0.440622 | 7_4:+49449027 | None:intergenic |
| GGAGTTACAATATGAGGAAC+AGG | 0.446394 | 7_4:+49451017 | None:intergenic |
| ACAACTTTCAAAGGACAAAC+AGG | 0.452124 | 7_4:+49451203 | None:intergenic |
| GCTGATGAGATTCTTAAAGA+TGG | 0.452510 | 7_4:-49451251 | Msa1159760:CDS |
| CCATTAAGAATTGTGTGTAT+TGG | 0.455692 | 7_4:-49451506 | Msa1159760:CDS |
| TGTGTATTGGAGCAGGTGCT+TGG | 0.457732 | 7_4:-49451493 | Msa1159760:CDS |
| TATGCCAATGCTCGAATTTG+TGG | 0.461408 | 7_4:-49450293 | Msa1159760:CDS |
| GAATTTGTGGAGCTGAGAAA+TGG | 0.462642 | 7_4:-49450280 | Msa1159760:CDS |
| TTGAAGCAAGACTTGGTGAT+AGG | 0.462713 | 7_4:-49451283 | Msa1159760:CDS |
| AGACTAATTGGTAAAACTAA+TGG | 0.462975 | 7_4:-49451533 | Msa1159760:CDS |
| TCTCAGGCTCTTCAGTTAGC+AGG | 0.463246 | 7_4:+49449455 | None:intergenic |
| TTTGCTAGTAGCACTCTCAT+TGG | 0.465676 | 7_4:+49449525 | None:intergenic |
| TTCGACAGCTGGAGTGCCTA+TGG | 0.466991 | 7_4:-49450372 | Msa1159760:intron |
| AATGGTCCAGCAAGTTTCTC+AGG | 0.467384 | 7_4:+49449439 | None:intergenic |
| CACAAAGTCATGCTTTCTAC+AGG | 0.470610 | 7_4:-49448559 | Msa1159760:CDS |
| GTGTGGATGGAACCATATAT+AGG | 0.473104 | 7_4:-49448489 | Msa1159760:three_prime_UTR |
| GACATGGGTGACAGCATTAG+TGG | 0.484154 | 7_4:-49449334 | Msa1159760:CDS |
| TGTAGAGTGTCTTCAAGATA+GGG | 0.485301 | 7_4:+49449013 | None:intergenic |
| TCTACAAAATATTGATATCC+AGG | 0.488839 | 7_4:-49448996 | Msa1159760:intron |
| ATCAGAATATGGAGAAGAGC+AGG | 0.496538 | 7_4:-49451410 | Msa1159760:CDS |
| TATAGGAAACAATAGTCAAA+GGG | 0.498205 | 7_4:-49448472 | Msa1159760:three_prime_UTR |
| TAGTAGCACTCTCATTGGTA+AGG | 0.499488 | 7_4:+49449530 | None:intergenic |
| TAAAGGTATTGAAGCTGCAT+TGG | 0.499510 | 7_4:-49451042 | Msa1159760:CDS |
| GTTATAATCTCTCTGTCTAA+AGG | 0.502564 | 7_4:-49451059 | Msa1159760:CDS |
| TTTGTGGGAGTTACAATATG+AGG | 0.502737 | 7_4:+49451011 | None:intergenic |
| ACAACCACATTTCATTGTAT+GGG | 0.504294 | 7_4:-49450231 | Msa1159760:CDS |
| AGCTCCACAAATTCGAGCAT+TGG | 0.510159 | 7_4:+49450289 | None:intergenic |
| GGGTGAACTAAGCCCGGACA+TGG | 0.515195 | 7_4:-49449350 | Msa1159760:CDS |
| GAGAAAATATGCAGCAGCAT+TGG | 0.517694 | 7_4:+49451857 | None:intergenic |
| AGCTAAGGGTGAACTAAGCC+CGG | 0.520175 | 7_4:-49449356 | Msa1159760:CDS |
| AATGTCTATGCAATTGGAGC+TGG | 0.522412 | 7_4:-49450164 | Msa1159760:intron |
| AAATGAATCAAAGAAGTACT+AGG | 0.522560 | 7_4:+49451651 | None:intergenic |
| AGAGATTAGTAAGTATTGGA+AGG | 0.527494 | 7_4:-49451099 | Msa1159760:CDS |
| TAATGCTGTCACCCATGTCC+GGG | 0.527903 | 7_4:+49449338 | None:intergenic |
| CCTTGTCACACATGAGGTCA+TGG | 0.530388 | 7_4:-49450198 | Msa1159760:CDS |
| TACTAGGAAGAACCAAATAT+GGG | 0.535712 | 7_4:+49451667 | None:intergenic |
| GAGAACATACTTTATCTTGG+TGG | 0.535772 | 7_4:-49450350 | Msa1159760:CDS |
| AAAGGTCGTAACGCGTGGTA+CGG | 0.542056 | 7_4:-49449388 | Msa1159760:CDS |
| AAATTAGTAACAACTTTCAA+AGG | 0.547608 | 7_4:+49451194 | None:intergenic |
| CACTGTTGTCCAAGAAGTGA+AGG | 0.553189 | 7_4:+49448536 | None:intergenic |
| GTACGGTCAGATGTTAGCTA+AGG | 0.556151 | 7_4:-49449371 | Msa1159760:CDS |
| AGAATTGTGTGTATTGGAGC+AGG | 0.556506 | 7_4:-49451500 | Msa1159760:CDS |
| ATATAGGAAACAATAGTCAA+AGG | 0.564598 | 7_4:-49448473 | Msa1159760:three_prime_UTR |
| AAATATGTTGAAGCAAGACT+TGG | 0.566622 | 7_4:-49451290 | Msa1159760:CDS |
| GGTGACAGCATTAGTGGCAA+AGG | 0.581226 | 7_4:-49449328 | Msa1159760:CDS |
| AGATAAAGTATGTTCTCCAT+AGG | 0.586722 | 7_4:+49450356 | None:intergenic |
| TGTATTGGAGCAGGTGCTTG+GGG | 0.597611 | 7_4:-49451491 | Msa1159760:CDS |
| GCAATTGCAATGCGTTCTCG+TGG | 0.608213 | 7_4:+49448581 | None:intergenic |
| AGTAGCACTCTCATTGGTAA+GGG | 0.611334 | 7_4:+49449531 | None:intergenic |
| ACATAAGTATCAGCTAGTAA+TGG | 0.625233 | 7_4:+49449421 | None:intergenic |
| TACGGTCAGATGTTAGCTAA+GGG | 0.629674 | 7_4:-49449370 | Msa1159760:CDS |
| TTTGTGGAGCTGAGAAATGG+AGG | 0.630464 | 7_4:-49450277 | Msa1159760:CDS |
| TATGCAGCAGCATTGGAATG+TGG | 0.633034 | 7_4:+49451864 | None:intergenic |
| GTCACACATGAGGTCATGGG+TGG | 0.637923 | 7_4:-49450194 | Msa1159760:CDS |
| CCATGACCTCATGTGTGACA+AGG | 0.642037 | 7_4:+49450198 | None:intergenic |
| TGTTAAAAGGTCGTAACGCG+TGG | 0.645736 | 7_4:-49449393 | Msa1159760:CDS |
| CTACTAGGGAGTGTCTGCAG+TGG | 0.650197 | 7_4:-49449121 | Msa1159760:intron |
| CTTGTCACACATGAGGTCAT+GGG | 0.650326 | 7_4:-49450197 | Msa1159760:CDS |
| GGTGAACTAAGCCCGGACAT+GGG | 0.660223 | 7_4:-49449349 | Msa1159760:CDS |
| TGCTTCAGAAATCTACAACA+AGG | 0.686795 | 7_4:-49450318 | Msa1159760:CDS |
| TAGTGACCTTGTCACACATG+AGG | 0.687205 | 7_4:-49450204 | Msa1159760:CDS |
| TTGTCCCATACAATGAAATG+TGG | 0.713044 | 7_4:+49450227 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTTGAATAATTGAAAA+TGG | - | chr7_4:49449239-49449258 | Msa1159760:intron | 15.0% |
| !!! | AAATATGTTACCAAAAATTT+TGG | - | chr7_4:49449466-49449485 | Msa1159760:CDS | 15.0% |
| !!! | TTTTTAAATTGAATTCGTTA+CGG | + | chr7_4:49449509-49449528 | None:intergenic | 15.0% |
| !!! | TAAAATTTTGCATTGAAATA+AGG | + | chr7_4:49449730-49449749 | None:intergenic | 15.0% |
| !!! | TATCTAAATATTTTTCTATG+AGG | + | chr7_4:49450383-49450402 | None:intergenic | 15.0% |
| !! | ATAAAGTAAATGTTAAAACA+TGG | + | chr7_4:49450551-49450570 | None:intergenic | 15.0% |
| !!! | AAACTTTTTGTTTTTTGAAA+CGG | + | chr7_4:49450897-49450916 | None:intergenic | 15.0% |
| !! | ATATTTCAATGATATACAAT+AGG | - | chr7_4:49451300-49451319 | Msa1159760:CDS | 15.0% |
| !! | CCAAATGTATTATTATTATT+TGG | + | chr7_4:49451435-49451454 | None:intergenic | 15.0% |
| !! | CCAAATAATAATAATACATT+TGG | - | chr7_4:49451432-49451451 | Msa1159760:CDS | 15.0% |
| !!! | TAGGATAAGAATAAGATTTT+GGG | + | chr7_4:49448332-49448351 | None:intergenic | 20.0% |
| !!! | TTAGGATAAGAATAAGATTT+TGG | + | chr7_4:49448333-49448352 | None:intergenic | 20.0% |
| !!! | ATTTATTCTTGTTACTTGTT+AGG | + | chr7_4:49448351-49448370 | None:intergenic | 20.0% |
| !!! | CAAGTAACAAGAATAAATTT+TGG | - | chr7_4:49448353-49448372 | Msa1159760:three_prime_UTR | 20.0% |
| !! | AGTTGATTATCAAAAATTGA+AGG | - | chr7_4:49448377-49448396 | Msa1159760:three_prime_UTR | 20.0% |
| !! | CACAATGTTAGTATATTAAT+AGG | - | chr7_4:49448405-49448424 | Msa1159760:three_prime_UTR | 20.0% |
| !!! | TTTCTTTTAGTTTTTGATCA+TGG | - | chr7_4:49448531-49448550 | Msa1159760:exon | 20.0% |
| !! | AAATTAGTAACAACTTTCAA+AGG | + | chr7_4:49448970-49448989 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTGAAAATGG+TGG | - | chr7_4:49449242-49449261 | Msa1159760:intron | 20.0% |
| !! | TAATTCATTAACCACTAATT+TGG | + | chr7_4:49449283-49449302 | None:intergenic | 20.0% |
| !! | CGATGATTAATGAATATAAT+AGG | + | chr7_4:49449331-49449350 | None:intergenic | 20.0% |
| !!! | AAAAAGAACTCCAAAATTTT+TGG | + | chr7_4:49449479-49449498 | None:intergenic | 20.0% |
| !! | AGTATGAAAATGAAAACAAT+AGG | + | chr7_4:49449534-49449553 | None:intergenic | 20.0% |
| !! | TAAGTACAAATTTCATTTCT+TGG | + | chr7_4:49449637-49449656 | None:intergenic | 20.0% |
| !!! | ATTAACTTGAAATTTGAGAA+AGG | - | chr7_4:49450491-49450510 | Msa1159760:intron | 20.0% |
| !! | TAAATGTTAAAACATGGAAA+TGG | + | chr7_4:49450545-49450564 | None:intergenic | 20.0% |
| !! | TTCATTGTAATGATATAATC+AGG | - | chr7_4:49450596-49450615 | Msa1159760:intron | 20.0% |
| !!! | ACTTATATGTAATTTTCTTG+AGG | - | chr7_4:49450924-49450943 | Msa1159760:intron | 20.0% |
| !! | TACTCTTGTTAATTATTGTT+AGG | + | chr7_4:49451201-49451220 | None:intergenic | 20.0% |
| !!! | ACATTTAACCTAACTTATTT+TGG | + | chr7_4:49451356-49451375 | None:intergenic | 20.0% |
| !! | TCAAAAGATAACAAGTTTAA+GGG | + | chr7_4:49451400-49451419 | None:intergenic | 20.0% |
| ! | AAATGTGAATGTAAGTTGTT+AGG | + | chr7_4:49448462-49448481 | None:intergenic | 25.0% |
| !!! | AAATGAATCAAAGAAGTACT+AGG | + | chr7_4:49448513-49448532 | None:intergenic | 25.0% |
| !!! | TTTTAGTTTTTGATCATGGT+GGG | - | chr7_4:49448535-49448554 | Msa1159760:CDS | 25.0% |
| ! | TCATCTCAGAATCATAATAA+TGG | - | chr7_4:49448577-49448596 | Msa1159760:CDS | 25.0% |
| !!! | GAATCATAATAATGGATTAG+AGG | - | chr7_4:49448585-49448604 | Msa1159760:CDS | 25.0% |
| ! | AGACTAATTGGTAAAACTAA+TGG | - | chr7_4:49448628-49448647 | Msa1159760:CDS | 25.0% |
| ! | ACAAAGTACAAATCAGAATA+TGG | - | chr7_4:49448740-49448759 | Msa1159760:intron | 25.0% |
| ! | AGAGTAACTGCTAAAATATA+AGG | + | chr7_4:49449665-49449684 | None:intergenic | 25.0% |
| !!! | TAGATTTCTGAAGCAATATT+TGG | + | chr7_4:49449838-49449857 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTCTATGCAAT+TGG | - | chr7_4:49449991-49450010 | Msa1159760:intron | 25.0% |
| !! | CCTAAGTTGGAATAATATAA+AGG | + | chr7_4:49450229-49450248 | None:intergenic | 25.0% |
| ! | CCTTTATATTATTCCAACTT+AGG | - | chr7_4:49450226-49450245 | Msa1159760:CDS | 25.0% |
| ! | AAGTTATGTAAATCCTAAGT+TGG | + | chr7_4:49450242-49450261 | None:intergenic | 25.0% |
| ! | TGCAACTGTAAATTGAATTA+AGG | - | chr7_4:49450426-49450445 | Msa1159760:intron | 25.0% |
| ! | AAATGGCATTATAACATTTG+AGG | + | chr7_4:49450528-49450547 | None:intergenic | 25.0% |
| ! | ATATCATTACAATGAAAAGC+AGG | + | chr7_4:49450592-49450611 | None:intergenic | 25.0% |
| ! | TGTAATGATATAATCAGGAA+TGG | - | chr7_4:49450601-49450620 | Msa1159760:intron | 25.0% |
| ! | ACTTATGTGACATTGTTAAA+AGG | - | chr7_4:49450755-49450774 | Msa1159760:intron | 25.0% |
| ! | TCTACAAAATATTGATATCC+AGG | - | chr7_4:49451165-49451184 | Msa1159760:CDS | 25.0% |
| ! | TTACTCATACTTAACAACAA+AGG | + | chr7_4:49451237-49451256 | None:intergenic | 25.0% |
| ! | TGTTAAGTATGAGTAATTAG+AGG | - | chr7_4:49451241-49451260 | Msa1159760:CDS | 25.0% |
| ! | TTCTAATGCCAAAATAAGTT+AGG | - | chr7_4:49451345-49451364 | Msa1159760:CDS | 25.0% |
| ! | CTCAAAAGATAACAAGTTTA+AGG | + | chr7_4:49451401-49451420 | None:intergenic | 25.0% |
| ! | TGACTATTGTTTCCTATATA+TGG | + | chr7_4:49451687-49451706 | None:intergenic | 25.0% |
| ! | ATATAGGAAACAATAGTCAA+AGG | - | chr7_4:49451688-49451707 | Msa1159760:five_prime_UTR | 25.0% |
| ! | TATAGGAAACAATAGTCAAA+GGG | - | chr7_4:49451689-49451708 | Msa1159760:five_prime_UTR | 25.0% |
| ! | TCAAGTTTTCATCCCATATT+TGG | - | chr7_4:49448482-49448501 | Msa1159760:three_prime_UTR | 30.0% |
| TACTAGGAAGAACCAAATAT+GGG | + | chr7_4:49448497-49448516 | None:intergenic | 30.0% | |
| !!! | CTTTTAGTTTTTGATCATGG+TGG | - | chr7_4:49448534-49448553 | Msa1159760:exon | 30.0% |
| CCAATACACACAATTCTTAA+TGG | + | chr7_4:49448658-49448677 | None:intergenic | 30.0% | |
| CCATTAAGAATTGTGTGTAT+TGG | - | chr7_4:49448655-49448674 | Msa1159760:intron | 30.0% | |
| !!! | CAAGAGAAGATGTTTTAAGA+AGG | - | chr7_4:49448824-49448843 | Msa1159760:intron | 30.0% |
| AAATATGTTGAAGCAAGACT+TGG | - | chr7_4:49448871-49448890 | Msa1159760:intron | 30.0% | |
| ! | TAATTTGCAAGAAGCTGTTT+GGG | - | chr7_4:49448984-49449003 | Msa1159760:intron | 30.0% |
| ! | GATGCTGATATTGTTGTTAA+TGG | - | chr7_4:49449006-49449025 | Msa1159760:CDS | 30.0% |
| TCGAAGAGATTAGTAAGTAT+TGG | - | chr7_4:49449058-49449077 | Msa1159760:CDS | 30.0% | |
| !! | AGAGATTAGTAAGTATTGGA+AGG | - | chr7_4:49449062-49449081 | Msa1159760:CDS | 30.0% |
| TTAGACAGAGAGATTATAAC+AGG | + | chr7_4:49449102-49449121 | None:intergenic | 30.0% | |
| GTTATAATCTCTCTGTCTAA+AGG | - | chr7_4:49449102-49449121 | Msa1159760:CDS | 30.0% | |
| !! | GCTTGATGAATCATTTTTGT+GGG | + | chr7_4:49449168-49449187 | None:intergenic | 30.0% |
| !! | TGCTTGATGAATCATTTTTG+TGG | + | chr7_4:49449169-49449188 | None:intergenic | 30.0% |
| AGTGGTTAATGAATTAACGT+CGG | - | chr7_4:49449287-49449306 | Msa1159760:intron | 30.0% | |
| ! | GTTGAATTGTGATAGTTCTA+TGG | - | chr7_4:49449575-49449594 | Msa1159760:intron | 30.0% |
| AGATAAAGTATGTTCTCCAT+AGG | + | chr7_4:49449808-49449827 | None:intergenic | 30.0% | |
| ATGGAGAACATACTTTATCT+TGG | - | chr7_4:49449808-49449827 | Msa1159760:intron | 30.0% | |
| TGTCTAAGAAACTTTGCTAA+AGG | + | chr7_4:49449913-49449932 | None:intergenic | 30.0% | |
| ACAACCACATTTCATTGTAT+GGG | - | chr7_4:49449930-49449949 | Msa1159760:intron | 30.0% | |
| ACATAAGTATCAGCTAGTAA+TGG | + | chr7_4:49450743-49450762 | None:intergenic | 30.0% | |
| ! | TGGTGTATGTTTGATTTCTT+AGG | - | chr7_4:49451503-49451522 | Msa1159760:CDS | 30.0% |
| ! | GGTGTATGTTTGATTTCTTA+GGG | - | chr7_4:49451504-49451523 | Msa1159760:CDS | 30.0% |
| ! | ATGCTATTCTAAAAGCTTTG+AGG | - | chr7_4:49451539-49451558 | Msa1159760:CDS | 30.0% |
| ! | TGCTATTCTAAAAGCTTTGA+GGG | - | chr7_4:49451540-49451559 | Msa1159760:CDS | 30.0% |
| ! | CAACAGTGATTATTTTCACT+TGG | - | chr7_4:49451640-49451659 | Msa1159760:five_prime_UTR | 30.0% |
| TTTCCAAAAACACTACATTG+TGG | - | chr7_4:49451819-49451838 | Msa1159760:five_prime_UTR | 30.0% | |
| !!! | AAGAAGTGTTACTCCAATTT+TGG | + | chr7_4:49451845-49451864 | None:intergenic | 30.0% |
| GTACTAGGAAGAACCAAATA+TGG | + | chr7_4:49448498-49448517 | None:intergenic | 35.0% | |
| !!! | ATCATGGTGGGAAGTATTTT+GGG | - | chr7_4:49448547-49448566 | Msa1159760:CDS | 35.0% |
| GATGAGTTTAGGAGACTAAT+TGG | - | chr7_4:49448616-49448635 | Msa1159760:CDS | 35.0% | |
| ! | GCACTTTTACAAGACAGTTA+TGG | - | chr7_4:49448706-49448725 | Msa1159760:intron | 35.0% |
| GCTGATGAGATTCTTAAAGA+TGG | - | chr7_4:49448910-49448929 | Msa1159760:intron | 35.0% | |
| ACAACTTTCAAAGGACAAAC+AGG | + | chr7_4:49448961-49448980 | None:intergenic | 35.0% | |
| ! | CTAATTTGCAAGAAGCTGTT+TGG | - | chr7_4:49448983-49449002 | Msa1159760:intron | 35.0% |
| TTCGAAAATCTCACGAGTTT+CGG | + | chr7_4:49449043-49449062 | None:intergenic | 35.0% | |
| !! | TAAAGGTATTGAAGCTGCAT+TGG | - | chr7_4:49449119-49449138 | Msa1159760:intron | 35.0% |
| TTTGTGGGAGTTACAATATG+AGG | + | chr7_4:49449153-49449172 | None:intergenic | 35.0% | |
| TACTTGTTCAATCCTTGCAA+AGG | + | chr7_4:49449221-49449240 | None:intergenic | 35.0% | |
| ATGCAAAGAGTGAAGAATGA+GGG | + | chr7_4:49449763-49449782 | None:intergenic | 35.0% | |
| AATGCAAAGAGTGAAGAATG+AGG | + | chr7_4:49449764-49449783 | None:intergenic | 35.0% | |
| GAGAACATACTTTATCTTGG+TGG | - | chr7_4:49449811-49449830 | Msa1159760:intron | 35.0% | |
| TGCTTCAGAAATCTACAACA+AGG | - | chr7_4:49449843-49449862 | Msa1159760:intron | 35.0% | |
| GACAACCACATTTCATTGTA+TGG | - | chr7_4:49449929-49449948 | Msa1159760:intron | 35.0% | |
| TTGTCCCATACAATGAAATG+TGG | + | chr7_4:49449937-49449956 | None:intergenic | 35.0% | |
| ! | CGCTTTATGTCTTCATGTTT+TGG | - | chr7_4:49450042-49450061 | Msa1159760:intron | 35.0% |
| !! | CTGCTCTAATATTTTTGCAG+GGG | + | chr7_4:49450105-49450124 | None:intergenic | 35.0% |
| !! | CCTGCTCTAATATTTTTGCA+GGG | + | chr7_4:49450106-49450125 | None:intergenic | 35.0% |
| !! | TCCTGCTCTAATATTTTTGC+AGG | + | chr7_4:49450107-49450126 | None:intergenic | 35.0% |
| ! | ACATGCCATTTATCTCTACT+AGG | - | chr7_4:49451025-49451044 | Msa1159760:CDS | 35.0% |
| ! | CATGCCATTTATCTCTACTA+GGG | - | chr7_4:49451026-49451045 | Msa1159760:CDS | 35.0% |
| GCAATACATTTAGGCTTGAT+TGG | + | chr7_4:49451088-49451107 | None:intergenic | 35.0% | |
| CTTCAGGATGCAATACATTT+AGG | + | chr7_4:49451097-49451116 | None:intergenic | 35.0% | |
| !!! | GCAACATGCTTTTTTTCTTC+AGG | + | chr7_4:49451113-49451132 | None:intergenic | 35.0% |
| ! | TGTAGAGTGTCTTCAAGATA+GGG | + | chr7_4:49451151-49451170 | None:intergenic | 35.0% |
| ! | TTGTAGAGTGTCTTCAAGAT+AGG | + | chr7_4:49451152-49451171 | None:intergenic | 35.0% |
| TTGTTAGGAGATTGATTACC+TGG | + | chr7_4:49451186-49451205 | None:intergenic | 35.0% | |
| TAATTAGAGGATGTGAAGTG+AGG | - | chr7_4:49451254-49451273 | Msa1159760:CDS | 35.0% | |
| AATTAGAGGATGTGAAGTGA+GGG | - | chr7_4:49451255-49451274 | Msa1159760:CDS | 35.0% | |
| AAATAAGTTTCCCATGCTTC+TGG | - | chr7_4:49451483-49451502 | Msa1159760:CDS | 35.0% | |
| GAGAAAATATGCAGCAGCAT+TGG | + | chr7_4:49448307-49448326 | None:intergenic | 40.0% | |
| !!! | GATCATGGTGGGAAGTATTT+TGG | - | chr7_4:49448546-49448565 | Msa1159760:CDS | 40.0% |
| !!! | GTGGGAAGTATTTTGGGAAA+TGG | - | chr7_4:49448553-49448572 | Msa1159760:CDS | 40.0% |
| AGGAGAAGCTTGATGAGTTT+AGG | - | chr7_4:49448605-49448624 | Msa1159760:CDS | 40.0% | |
| AGAATTGTGTGTATTGGAGC+AGG | - | chr7_4:49448661-49448680 | Msa1159760:intron | 40.0% | |
| ATCAGAATATGGAGAAGAGC+AGG | - | chr7_4:49448751-49448770 | Msa1159760:intron | 40.0% | |
| !! | TTGAAGCAAGACTTGGTGAT+AGG | - | chr7_4:49448878-49448897 | Msa1159760:intron | 40.0% |
| GGAGTTACAATATGAGGAAC+AGG | + | chr7_4:49449147-49449166 | None:intergenic | 40.0% | |
| CTTGCAAAGGCAAACAGAAA+TGG | + | chr7_4:49449208-49449227 | None:intergenic | 40.0% | |
| CATTTCTGTTTGCCTTTGCA+AGG | - | chr7_4:49449206-49449225 | Msa1159760:intron | 40.0% | |
| GGTTAATGAATTAACGTCGG+TGG | - | chr7_4:49449290-49449309 | Msa1159760:intron | 40.0% | |
| ! | CTTTCGCGACAACTTTTAAG+TGG | + | chr7_4:49449391-49449410 | None:intergenic | 40.0% |
| TCAGATATCAGATGCGCTAT+TGG | + | chr7_4:49449436-49449455 | None:intergenic | 40.0% | |
| AGTGAAGAATGAGGGATGAA+AGG | + | chr7_4:49449755-49449774 | None:intergenic | 40.0% | |
| TATGCCAATGCTCGAATTTG+TGG | - | chr7_4:49449868-49449887 | Msa1159760:intron | 40.0% | |
| GAATTTGTGGAGCTGAGAAA+TGG | - | chr7_4:49449881-49449900 | Msa1159760:intron | 40.0% | |
| AATGTCTATGCAATTGGAGC+TGG | - | chr7_4:49449997-49450016 | Msa1159760:intron | 40.0% | |
| CCCTGCAAAAATATTAGAGC+AGG | - | chr7_4:49450103-49450122 | Msa1159760:intron | 40.0% | |
| GGAGACAGTTTAACGATAAG+TGG | + | chr7_4:49450299-49450318 | None:intergenic | 40.0% | |
| ! | GGACAGAGTTCTAACTTCAA+CGG | + | chr7_4:49450320-49450339 | None:intergenic | 40.0% |
| GTTTAGCCTAGTAGTCTCAA+GGG | + | chr7_4:49450341-49450360 | None:intergenic | 40.0% | |
| AGTTTAGCCTAGTAGTCTCA+AGG | + | chr7_4:49450342-49450361 | None:intergenic | 40.0% | |
| CTTGTCTCTATAGCATGTGA+AGG | + | chr7_4:49450463-49450482 | None:intergenic | 40.0% | |
| CACATGCTATAGAGACAAGA+AGG | - | chr7_4:49450464-49450483 | Msa1159760:intron | 40.0% | |
| AGTAGCACTCTCATTGGTAA+GGG | + | chr7_4:49450633-49450652 | None:intergenic | 40.0% | |
| TAGTAGCACTCTCATTGGTA+AGG | + | chr7_4:49450634-49450653 | None:intergenic | 40.0% | |
| TTTGCTAGTAGCACTCTCAT+TGG | + | chr7_4:49450639-49450658 | None:intergenic | 40.0% | |
| TACGGTCAGATGTTAGCTAA+GGG | - | chr7_4:49450791-49450810 | Msa1159760:intron | 40.0% | |
| TAGTGGCAAAGGAATGATTC+AGG | - | chr7_4:49450844-49450863 | Msa1159760:intron | 40.0% | |
| CACTCCCTAGTAGAGATAAA+TGG | + | chr7_4:49451033-49451052 | None:intergenic | 40.0% | |
| AAGATAGGGCAAAGTTCAAC+AGG | + | chr7_4:49451137-49451156 | None:intergenic | 40.0% | |
| ! | CAAACATACACCAGAAGCAT+GGG | + | chr7_4:49451496-49451515 | None:intergenic | 40.0% |
| TCAAACATACACCAGAAGCA+TGG | + | chr7_4:49451497-49451516 | None:intergenic | 40.0% | |
| CACAAAGTCATGCTTTCTAC+AGG | - | chr7_4:49451602-49451621 | Msa1159760:CDS | 40.0% | |
| TCACTTGGCAAAAACAAGTG+TGG | - | chr7_4:49451655-49451674 | Msa1159760:five_prime_UTR | 40.0% | |
| TTGGCAAAAACAAGTGTGGA+TGG | - | chr7_4:49451659-49451678 | Msa1159760:five_prime_UTR | 40.0% | |
| GTGTGGATGGAACCATATAT+AGG | - | chr7_4:49451672-49451691 | Msa1159760:five_prime_UTR | 40.0% | |
| ! | TGGCCACAATGTAGTGTTTT+TGG | + | chr7_4:49451825-49451844 | None:intergenic | 40.0% |
| CACTACATTGTGGCCAAAAT+TGG | - | chr7_4:49451829-49451848 | Msa1159760:five_prime_UTR | 40.0% | |
| ! | TATGCAGCAGCATTGGAATG+TGG | + | chr7_4:49448300-49448319 | None:intergenic | 45.0% |
| ATCTCACGAGTTTCGGTTGA+AGG | + | chr7_4:49449036-49449055 | None:intergenic | 45.0% | |
| TCACGTCACGTCCAAATTAG+TGG | - | chr7_4:49449269-49449288 | Msa1159760:intron | 45.0% | |
| TGCATTGCAAATTCGACAGC+TGG | - | chr7_4:49449778-49449797 | Msa1159760:intron | 45.0% | |
| AGCTCCACAAATTCGAGCAT+TGG | + | chr7_4:49449875-49449894 | None:intergenic | 45.0% | |
| TTTGTGGAGCTGAGAAATGG+AGG | - | chr7_4:49449884-49449903 | Msa1159760:intron | 45.0% | |
| TAGTGACCTTGTCACACATG+AGG | - | chr7_4:49449957-49449976 | Msa1159760:intron | 45.0% | |
| CTTGTCACACATGAGGTCAT+GGG | - | chr7_4:49449964-49449983 | Msa1159760:intron | 45.0% | |
| AATGGTCCAGCAAGTTTCTC+AGG | + | chr7_4:49450725-49450744 | None:intergenic | 45.0% | |
| TGTTAAAAGGTCGTAACGCG+TGG | - | chr7_4:49450768-49450787 | Msa1159760:intron | 45.0% | |
| GTACGGTCAGATGTTAGCTA+AGG | - | chr7_4:49450790-49450809 | Msa1159760:intron | 45.0% | |
| TTCTACAGGCCTTCACTTCT+TGG | - | chr7_4:49451616-49451635 | Msa1159760:exon | 45.0% | |
| CACTGTTGTCCAAGAAGTGA+AGG | + | chr7_4:49451628-49451647 | None:intergenic | 45.0% | |
| TGTGTATTGGAGCAGGTGCT+TGG | - | chr7_4:49448668-49448687 | Msa1159760:intron | 50.0% | |
| GTGTATTGGAGCAGGTGCTT+GGG | - | chr7_4:49448669-49448688 | Msa1159760:intron | 50.0% | |
| TGTATTGGAGCAGGTGCTTG+GGG | - | chr7_4:49448670-49448689 | Msa1159760:intron | 50.0% | |
| CCATGACCTCATGTGTGACA+AGG | + | chr7_4:49449966-49449985 | None:intergenic | 50.0% | |
| CCTTGTCACACATGAGGTCA+TGG | - | chr7_4:49449963-49449982 | Msa1159760:intron | 50.0% | |
| TAGCCTGAGACAGGCACAAT+CGG | + | chr7_4:49450190-49450209 | None:intergenic | 50.0% | |
| GTGGAAAAATCGCTCGAGCA+GGG | + | chr7_4:49450280-49450299 | None:intergenic | 50.0% | |
| AGTGGAAAAATCGCTCGAGC+AGG | + | chr7_4:49450281-49450300 | None:intergenic | 50.0% | |
| CTCTGTCCCTTGAGACTACT+AGG | - | chr7_4:49450332-49450351 | Msa1159760:CDS | 50.0% | |
| TCTCAGGCTCTTCAGTTAGC+AGG | + | chr7_4:49450709-49450728 | None:intergenic | 50.0% | |
| GAAGAGCCTGAGAAACTTGC+TGG | - | chr7_4:49450716-49450735 | Msa1159760:intron | 50.0% | |
| AAAGGTCGTAACGCGTGGTA+CGG | - | chr7_4:49450773-49450792 | Msa1159760:intron | 50.0% | |
| AGCTAAGGGTGAACTAAGCC+CGG | - | chr7_4:49450805-49450824 | Msa1159760:intron | 50.0% | |
| TAATGCTGTCACCCATGTCC+GGG | + | chr7_4:49450826-49450845 | None:intergenic | 50.0% | |
| CTAATGCTGTCACCCATGTC+CGG | + | chr7_4:49450827-49450846 | None:intergenic | 50.0% | |
| GACATGGGTGACAGCATTAG+TGG | - | chr7_4:49450827-49450846 | Msa1159760:intron | 50.0% | |
| GGTGACAGCATTAGTGGCAA+AGG | - | chr7_4:49450833-49450852 | Msa1159760:intron | 50.0% | |
| GCAATTGCAATGCGTTCTCG+TGG | + | chr7_4:49451583-49451602 | None:intergenic | 50.0% | |
| ! | TTCGACAGCTGGAGTGCCTA+TGG | - | chr7_4:49449789-49449808 | Msa1159760:intron | 55.0% |
| GTCACACATGAGGTCATGGG+TGG | - | chr7_4:49449967-49449986 | Msa1159760:intron | 55.0% | |
| CAACCGATTGTGCCTGTCTC+AGG | - | chr7_4:49450184-49450203 | Msa1159760:CDS | 55.0% | |
| GGTGAACTAAGCCCGGACAT+GGG | - | chr7_4:49450812-49450831 | Msa1159760:intron | 55.0% | |
| !! | CTACTAGGGAGTGTCTGCAG+TGG | - | chr7_4:49451040-49451059 | Msa1159760:CDS | 55.0% |
| GCCTGTCTCAGGCTACAGTG+CGG | - | chr7_4:49450195-49450214 | Msa1159760:CDS | 60.0% | |
| GGGTGAACTAAGCCCGGACA+TGG | - | chr7_4:49450811-49450830 | Msa1159760:intron | 60.0% | |
| GCCGCACTGTAGCCTGAGAC+AGG | + | chr7_4:49450199-49450218 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49448287 | 49451896 | 49448287 | ID=Msa1159760;Name=Msa1159760 |
| chr7_4 | mRNA | 49448287 | 49451896 | 49448287 | ID=Msa1159760-mRNA-1;Parent=Msa1159760;Name=Msa1159760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=263|1|1|1|1|1|5|248|457 |
| chr7_4 | exon | 49448287 | 49448658 | 49448287 | ID=Msa1159760-mRNA-1:exon:13615;Parent=Msa1159760-mRNA-1 |
| chr7_4 | exon | 49448997 | 49449136 | 49448997 | ID=Msa1159760-mRNA-1:exon:13614;Parent=Msa1159760-mRNA-1 |
| chr7_4 | exon | 49449318 | 49449565 | 49449318 | ID=Msa1159760-mRNA-1:exon:13613;Parent=Msa1159760-mRNA-1 |
| chr7_4 | exon | 49450165 | 49450386 | 49450165 | ID=Msa1159760-mRNA-1:exon:13612;Parent=Msa1159760-mRNA-1 |
| chr7_4 | exon | 49450994 | 49451896 | 49450994 | ID=Msa1159760-mRNA-1:exon:13611;Parent=Msa1159760-mRNA-1 |
| chr7_4 | five_prime_UTR | 49451634 | 49451896 | 49451634 | ID=Msa1159760-mRNA-1:five_prime_utr;Parent=Msa1159760-mRNA-1 |
| chr7_4 | CDS | 49450994 | 49451633 | 49450994 | ID=Msa1159760-mRNA-1:cds;Parent=Msa1159760-mRNA-1 |
| chr7_4 | CDS | 49450165 | 49450386 | 49450165 | ID=Msa1159760-mRNA-1:cds;Parent=Msa1159760-mRNA-1 |
| chr7_4 | CDS | 49449318 | 49449565 | 49449318 | ID=Msa1159760-mRNA-1:cds;Parent=Msa1159760-mRNA-1 |
| chr7_4 | CDS | 49448997 | 49449136 | 49448997 | ID=Msa1159760-mRNA-1:cds;Parent=Msa1159760-mRNA-1 |
| chr7_4 | CDS | 49448535 | 49448658 | 49448535 | ID=Msa1159760-mRNA-1:cds;Parent=Msa1159760-mRNA-1 |
| chr7_4 | three_prime_UTR | 49448287 | 49448534 | 49448287 | ID=Msa1159760-mRNA-1:three_prime_utr;Parent=Msa1159760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
