Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117710 | XP_003624868.1 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 9.63e-150 | 424 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117710 | sp|Q9XI05|PSB3A_ARATH | 93.137 | 204 | 14 | 0 | 1 | 204 | 1 | 204 | 3.23e-145 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117710 | G7L4S2 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 4.60e-150 | 424 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081650 | Msa1117710 | 0.801488 | 8.793303e-49 | -8.615850e-47 |
| Msa0817650 | Msa1117710 | 0.820330 | 7.262947e-53 | -8.615850e-47 |
| Msa0858130 | Msa1117710 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117710 | MtrunA17_Chr7g0255251 | 100.000 | 204 | 0 | 0 | 1 | 204 | 1 | 204 | 8.86e-154 | 424 |
| Msa1117710 | MtrunA17_Chr4g0045861 | 96.569 | 204 | 7 | 0 | 1 | 204 | 1 | 204 | 1.86e-149 | 413 |
| Msa1117710 | MtrunA17_Chr2g0328831 | 32.558 | 129 | 87 | 0 | 2 | 130 | 9 | 137 | 3.94e-18 | 79.3 |
| Msa1117710 | MtrunA17_Chr5g0435161 | 32.558 | 129 | 87 | 0 | 2 | 130 | 9 | 137 | 4.19e-18 | 79.3 |
| Msa1117710 | MtrunA17_Chr3g0116161 | 26.455 | 189 | 137 | 2 | 8 | 196 | 54 | 240 | 7.65e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1117710 | AT1G21720.1 | 93.137 | 204 | 14 | 0 | 1 | 204 | 1 | 204 | 3.29e-146 | 405 |
| Msa1117710 | AT1G77440.2 | 93.627 | 204 | 13 | 0 | 1 | 204 | 1 | 204 | 3.88e-145 | 402 |
| Msa1117710 | AT1G77440.1 | 93.627 | 204 | 13 | 0 | 1 | 204 | 1 | 204 | 3.88e-145 | 402 |
| Msa1117710 | AT3G60820.1 | 25.806 | 217 | 145 | 3 | 2 | 204 | 9 | 223 | 1.09e-18 | 81.3 |
| Msa1117710 | AT3G60820.3 | 25.806 | 217 | 145 | 3 | 2 | 204 | 9 | 223 | 1.09e-18 | 81.3 |
| Msa1117710 | AT3G60820.2 | 32.558 | 129 | 87 | 0 | 2 | 130 | 9 | 137 | 2.11e-18 | 80.5 |
Find 61 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCTTCATCGGTCTTTC+TGG | 0.122403 | 7_3:-66125172 | Msa1117710:CDS |
| GAAGAGTTTATCATGAATTT+TGG | 0.140707 | 7_3:+66125186 | None:intergenic |
| GAACTTCAATTAAATGTATC+TGG | 0.263492 | 7_3:-66120194 | Msa1117710:three_prime_UTR |
| CAGCCTGTAATTGCTGGATT+AGG | 0.273487 | 7_3:-66123952 | Msa1117710:CDS |
| TGGAATTAAATTATATGTAT+TGG | 0.298510 | 7_3:-66120095 | Msa1117710:three_prime_UTR |
| AGCCTGTAATTGCTGGATTA+GGG | 0.310212 | 7_3:-66123951 | Msa1117710:CDS |
| GCAAAAGACTTTGTTGTTGC+TGG | 0.318237 | 7_3:-66122152 | Msa1117710:CDS |
| TCTTGCCAACCATGGCTACT+AGG | 0.334253 | 7_3:+66125284 | None:intergenic |
| ATCCTTTCCTTTACTTCTGT+TGG | 0.340096 | 7_3:+66120348 | None:intergenic |
| TCCCCTAATCCAGCAATTAC+AGG | 0.353996 | 7_3:+66123949 | None:intergenic |
| ATTACAGGCTGGCAAAAGTA+TGG | 0.375854 | 7_3:+66123964 | None:intergenic |
| GGTATCAGCGTCTTGTGTTT+CGG | 0.380268 | 7_3:-66125037 | Msa1117710:CDS |
| TATGTACCATCCGTTGTTAA+TGG | 0.385276 | 7_3:-66120233 | Msa1117710:three_prime_UTR |
| CACATGTGAATAACACCTTA+AGG | 0.385386 | 7_3:+66119989 | None:intergenic |
| TTTGGAAATTCTTTGGAAAT+CGG | 0.398276 | 7_3:+66125204 | None:intergenic |
| GTAGACCGTGACTGTCTTAG+TGG | 0.414485 | 7_3:-66121050 | Msa1117710:CDS |
| ATGTACCATCCGTTGTTAAT+GGG | 0.423469 | 7_3:-66120232 | Msa1117710:three_prime_UTR |
| CTGTTTAATTCTGAGCTGAA+TGG | 0.441666 | 7_3:-66120260 | Msa1117710:three_prime_UTR |
| GCGTCCATTGTGCAAATGAA+TGG | 0.449188 | 7_3:+66123916 | None:intergenic |
| TAGTTACAGTGTTTGAGAAT+CGG | 0.451438 | 7_3:+66125141 | None:intergenic |
| ACATGTGAATAACACCTTAA+GGG | 0.455745 | 7_3:+66119990 | None:intergenic |
| ACTTTGGGACAAACCATGTC+AGG | 0.479439 | 7_3:+66122083 | None:intergenic |
| ACCGTGACTGTCTTAGTGGA+TGG | 0.480450 | 7_3:-66121046 | Msa1117710:CDS |
| ATTTGCACAATGGACGCGAT+TGG | 0.488319 | 7_3:-66123910 | Msa1117710:CDS |
| TCTTTGGAAATCGGTAGCTA+TGG | 0.498667 | 7_3:+66125213 | None:intergenic |
| CTTGCCAACCATGGCTACTA+GGG | 0.498989 | 7_3:+66125285 | None:intergenic |
| CAGCACTCCAACAGAAGTAA+AGG | 0.504233 | 7_3:-66120355 | Msa1117710:CDS |
| TGAAGAACGTGATATGAAAC+CGG | 0.514373 | 7_3:-66124994 | Msa1117710:CDS |
| TACAGACGATAACAGTGCTT+GGG | 0.517832 | 7_3:+66121070 | None:intergenic |
| CTTCTATGCAATACGAGAAA+CGG | 0.519338 | 7_3:-66124950 | Msa1117710:intron |
| AACACCGAGTCTTCGATCGC+TGG | 0.522918 | 7_3:+66125246 | None:intergenic |
| ATTCATGATAAACTCTTCAT+CGG | 0.530804 | 7_3:-66125181 | Msa1117710:CDS |
| ACTGCGTCCGAGTCTTTGTA+TGG | 0.534169 | 7_3:-66122128 | Msa1117710:CDS |
| CCGTGACTGTCTTAGTGGAT+GGG | 0.544414 | 7_3:-66121045 | Msa1117710:CDS |
| CTACAGACGATAACAGTGCT+TGG | 0.547914 | 7_3:+66121069 | None:intergenic |
| CGATAACAGTGCTTGGGAGA+TGG | 0.553528 | 7_3:+66121076 | None:intergenic |
| ACTTGAAGTAGTTGATCAGA+TGG | 0.564956 | 7_3:+66120295 | None:intergenic |
| CAAACCATTCATTTGCACAA+TGG | 0.566818 | 7_3:-66123920 | Msa1117710:CDS |
| ACCAAGCTAGCAAAAGTCTC+CGG | 0.569920 | 7_3:+66124975 | None:intergenic |
| GAGTCTTCGATCGCTGGCAA+TGG | 0.571455 | 7_3:+66125252 | None:intergenic |
| CGGAAGTGCCCTAGTAGCCA+TGG | 0.579298 | 7_3:-66125293 | Msa1117710:CDS |
| GCCTGTAATTGCTGGATTAG+GGG | 0.580864 | 7_3:-66123950 | Msa1117710:CDS |
| ATTGAAGTTCACAATAACAA+AGG | 0.583242 | 7_3:+66120207 | None:intergenic |
| ATTTAATTCCACAGCATACA+CGG | 0.587915 | 7_3:+66120107 | None:intergenic |
| TTACAGTGTTTGAGAATCGG+TGG | 0.592428 | 7_3:+66125144 | None:intergenic |
| CTCTGGAACCGTGTATGCTG+TGG | 0.592827 | 7_3:-66120115 | Msa1117710:three_prime_UTR |
| TTTCTTATTACAGGAAGCTG+AGG | 0.599159 | 7_3:-66121111 | Msa1117710:intron |
| CGTGACTGTCTTAGTGGATG+GGG | 0.600487 | 7_3:-66121044 | Msa1117710:CDS |
| ATTGCCAGCGATCGAAGACT+CGG | 0.602697 | 7_3:-66125250 | Msa1117710:CDS |
| CTAATCCAGCAATTACAGGC+TGG | 0.603284 | 7_3:+66123953 | None:intergenic |
| ATCGATGTTTAAGCCTGACA+TGG | 0.603428 | 7_3:-66122096 | Msa1117710:intron |
| CTCCAACAGAAGTAAAGGAA+AGG | 0.604008 | 7_3:-66120350 | Msa1117710:CDS |
| AGGTACCCATTAACAACGGA+TGG | 0.607705 | 7_3:+66120227 | None:intergenic |
| GACTGTCTTAGTGGATGGGG+TGG | 0.616226 | 7_3:-66121041 | Msa1117710:CDS |
| AGTGCCCTAGTAGCCATGGT+TGG | 0.639122 | 7_3:-66125289 | Msa1117710:CDS |
| GAAGCAATTCTTGCCAACCA+TGG | 0.643972 | 7_3:+66125276 | None:intergenic |
| ACAAGCACCATACAAAGACT+CGG | 0.663819 | 7_3:+66122121 | None:intergenic |
| CCCATCCACTAAGACAGTCA+CGG | 0.679067 | 7_3:+66121045 | None:intergenic |
| GTTGTACTCGAAAATCGACA+TGG | 0.689507 | 7_3:+66125315 | None:intergenic |
| ACAAAGGTACCCATTAACAA+CGG | 0.698583 | 7_3:+66120223 | None:intergenic |
| AAAACGATGAATTGGATTCG+GGG | 0.705008 | 7_3:+66120015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAATTTTATTAATT+AGG | - | chr7_3:66124824-66124843 | Msa1117710:intron | 0.0% |
| !!! | TATTTTATTTTTGTATATAC+AGG | - | chr7_3:66123220-66123239 | Msa1117710:intron | 10.0% |
| !!! | ATTTTATTTTTGTATATACA+GGG | - | chr7_3:66123221-66123240 | Msa1117710:intron | 10.0% |
| !! | TAAAAAAATATTAATGTGTA+TGG | - | chr7_3:66124720-66124739 | Msa1117710:intron | 10.0% |
| !!! | TTAATTTTATTAATTAGGAT+TGG | - | chr7_3:66124829-66124848 | Msa1117710:intron | 10.0% |
| !!! | CAAGTTTTTAAAAATTAAAT+TGG | - | chr7_3:66124918-66124937 | Msa1117710:intron | 10.0% |
| !! | TAATTTATAGTTATTAATCA+AGG | + | chr7_3:66124958-66124977 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTGTGATTGA+AGG | - | chr7_3:66120343-66120362 | Msa1117710:CDS | 15.0% |
| !! | TTTAAATTTCAACAAGTTAT+TGG | + | chr7_3:66121247-66121266 | None:intergenic | 15.0% |
| !! | TACAAACATTTATAACTTTA+AGG | + | chr7_3:66121578-66121597 | None:intergenic | 15.0% |
| !! | AGTTTCATAAATCATAAATA+TGG | + | chr7_3:66121997-66122016 | None:intergenic | 15.0% |
| !! | ATATTTATGATTTATGAAAC+TGG | - | chr7_3:66121996-66122015 | Msa1117710:intron | 15.0% |
| !! | AACAAAATCATTAAATCAAA+TGG | + | chr7_3:66122600-66122619 | None:intergenic | 15.0% |
| !! | TGGAATTAAATTATATGTAT+TGG | - | chr7_3:66125306-66125325 | Msa1117710:CDS | 15.0% |
| !! | CAAACACATTGAAAAAATTA+GGG | - | chr7_3:66120013-66120032 | Msa1117710:three_prime_UTR | 20.0% |
| !!! | TTTAGATCTGGATTTTATTT+AGG | - | chr7_3:66120490-66120509 | Msa1117710:intron | 20.0% |
| !!! | TTTTTTGATGTACTAAGATT+AGG | - | chr7_3:66120588-66120607 | Msa1117710:intron | 20.0% |
| !! | ATCATAATCTGTTAAAAAAG+TGG | - | chr7_3:66120631-66120650 | Msa1117710:intron | 20.0% |
| !!! | AACCACAATATAAAAGTTTT+GGG | - | chr7_3:66120803-66120822 | Msa1117710:intron | 20.0% |
| !! | TTTACAAGATTTAAAAACAG+AGG | + | chr7_3:66120923-66120942 | None:intergenic | 20.0% |
| !!! | AATACATTTTGGTTCATTTA+AGG | - | chr7_3:66121039-66121058 | Msa1117710:CDS | 20.0% |
| !!! | TAACAAATTTTCTATCTGTT+TGG | - | chr7_3:66121207-66121226 | Msa1117710:intron | 20.0% |
| !! | AAGAAACATAGAATTTCAAA+GGG | + | chr7_3:66121270-66121289 | None:intergenic | 20.0% |
| !! | AACAATTTCCAATAAACTAT+AGG | - | chr7_3:66121323-66121342 | Msa1117710:intron | 20.0% |
| !! | TATACAATCCTATAGTTTAT+TGG | + | chr7_3:66121334-66121353 | None:intergenic | 20.0% |
| !!! | TATGCTTTCTTTTTCTTTTT+AGG | - | chr7_3:66121408-66121427 | Msa1117710:intron | 20.0% |
| !!! | TTTCTTTTTCTTTTTAGGTT+CGG | - | chr7_3:66121413-66121432 | Msa1117710:intron | 20.0% |
| !! | TACTGTTCATATATTATCTT+GGG | - | chr7_3:66121536-66121555 | Msa1117710:intron | 20.0% |
| !!! | CTAATTGCTAATTTTAGTAA+AGG | - | chr7_3:66121621-66121640 | Msa1117710:intron | 20.0% |
| !!! | AATTTTAATAGTGTAGAAGT+TGG | - | chr7_3:66121849-66121868 | Msa1117710:intron | 20.0% |
| !!! | TTATATCAAATAAAGTGTTG+TGG | + | chr7_3:66122088-66122107 | None:intergenic | 20.0% |
| !!! | CTTTTGATCTGAAAATATTT+GGG | - | chr7_3:66122988-66123007 | Msa1117710:intron | 20.0% |
| !!! | GGAATAATATTTTGCATAAA+AGG | + | chr7_3:66123036-66123055 | None:intergenic | 20.0% |
| !!! | AGGATTGTATATTCATTTTA+TGG | - | chr7_3:66123587-66123606 | Msa1117710:intron | 20.0% |
| !!! | TATTCATTTTATGGTTTTGA+AGG | - | chr7_3:66123596-66123615 | Msa1117710:intron | 20.0% |
| !!! | ATTCATTTTATGGTTTTGAA+GGG | - | chr7_3:66123597-66123616 | Msa1117710:intron | 20.0% |
| !!! | TTCTTTAGTTGTTTGTTATT+GGG | - | chr7_3:66124416-66124435 | Msa1117710:intron | 20.0% |
| !!! | ATCATATTTTTGATCTCTTA+AGG | - | chr7_3:66124895-66124914 | Msa1117710:intron | 20.0% |
| !!! | ATATGTATTGGAATGTTTTT+AGG | - | chr7_3:66125318-66125337 | Msa1117710:exon | 20.0% |
| ! | GCAAACACATTGAAAAAATT+AGG | - | chr7_3:66120012-66120031 | Msa1117710:three_prime_UTR | 25.0% |
| !! | TTTGGAAATTCTTTGGAAAT+CGG | + | chr7_3:66120200-66120219 | None:intergenic | 25.0% |
| !!! | CATGAATTTTGGAAATTCTT+TGG | + | chr7_3:66120207-66120226 | None:intergenic | 25.0% |
| !! | GAAGAGTTTATCATGAATTT+TGG | + | chr7_3:66120218-66120237 | None:intergenic | 25.0% |
| ! | ATTCATGATAAACTCTTCAT+CGG | - | chr7_3:66120220-66120239 | Msa1117710:three_prime_UTR | 25.0% |
| !!! | ATTTAGGTTTAGTTTGTGAT+CGG | - | chr7_3:66120506-66120525 | Msa1117710:intron | 25.0% |
| !!! | GAATGATTTGTTTGTTTTAG+TGG | - | chr7_3:66120533-66120552 | Msa1117710:intron | 25.0% |
| !!! | TTGTTTGTTTTAGTGGAATT+AGG | - | chr7_3:66120540-66120559 | Msa1117710:intron | 25.0% |
| !!! | TGTTTGTTTTAGTGGAATTA+GGG | - | chr7_3:66120541-66120560 | Msa1117710:intron | 25.0% |
| ! | TATATTAGTGTTAGACGTAA+AGG | - | chr7_3:66120735-66120754 | Msa1117710:intron | 25.0% |
| ! | ATATTAGTGTTAGACGTAAA+GGG | - | chr7_3:66120736-66120755 | Msa1117710:intron | 25.0% |
| !! | CAACCACAATATAAAAGTTT+TGG | - | chr7_3:66120802-66120821 | Msa1117710:intron | 25.0% |
| !! | AAATCTTGTAAAAGTGTATC+AGG | - | chr7_3:66120931-66120950 | Msa1117710:intron | 25.0% |
| !! | AATCTTGTAAAAGTGTATCA+GGG | - | chr7_3:66120932-66120951 | Msa1117710:intron | 25.0% |
| ! | TCTTTGATTCATATTAAGAC+TGG | - | chr7_3:66120995-66121014 | Msa1117710:intron | 25.0% |
| !! | GGCAGAAAAATAATACATTT+TGG | - | chr7_3:66121028-66121047 | Msa1117710:CDS | 25.0% |
| ! | GAAGAAACATAGAATTTCAA+AGG | + | chr7_3:66121271-66121290 | None:intergenic | 25.0% |
| !! | AATTCTATGTTTCTTCCTTT+TGG | - | chr7_3:66121275-66121294 | Msa1117710:intron | 25.0% |
| ! | GAAATTGTTATGATGTAATC+AGG | + | chr7_3:66121312-66121331 | None:intergenic | 25.0% |
| ! | CTACTGTTCATATATTATCT+TGG | - | chr7_3:66121535-66121554 | Msa1117710:intron | 25.0% |
| ! | ACTGTTCATATATTATCTTG+GGG | - | chr7_3:66121537-66121556 | Msa1117710:intron | 25.0% |
| ! | TATCACATTATGCATTTGTT+TGG | - | chr7_3:66121703-66121722 | Msa1117710:intron | 25.0% |
| ! | ATCACATTATGCATTTGTTT+GGG | - | chr7_3:66121704-66121723 | Msa1117710:intron | 25.0% |
| !!! | ACATCAAATTTTCAAGTAAC+TGG | + | chr7_3:66121804-66121823 | None:intergenic | 25.0% |
| ! | AGTTACTTGAAAATTTGATG+TGG | - | chr7_3:66121803-66121822 | Msa1117710:intron | 25.0% |
| ! | AAGCAAGTAAGAAAATTGAA+CGG | - | chr7_3:66121893-66121912 | Msa1117710:intron | 25.0% |
| !!! | TAAGTTTTATGTGTCTATGT+TGG | - | chr7_3:66122026-66122045 | Msa1117710:intron | 25.0% |
| ! | TATTCAAAGTAGTAATAGTG+GGG | + | chr7_3:66122209-66122228 | None:intergenic | 25.0% |
| ! | CTATTCAAAGTAGTAATAGT+GGG | + | chr7_3:66122210-66122229 | None:intergenic | 25.0% |
| ! | ACTATTCAAAGTAGTAATAG+TGG | + | chr7_3:66122211-66122230 | None:intergenic | 25.0% |
| ! | ATTACTACTTTGAATAGTTG+TGG | - | chr7_3:66122213-66122232 | Msa1117710:intron | 25.0% |
| ! | TTACTACTTTGAATAGTTGT+GGG | - | chr7_3:66122214-66122233 | Msa1117710:intron | 25.0% |
| !! | GTAAACCTCTTCTTTAATTT+AGG | + | chr7_3:66122312-66122331 | None:intergenic | 25.0% |
| !! | ACCTCTTTCTATTTAGTTTA+GGG | + | chr7_3:66122349-66122368 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTTCTTTTGCTT+AGG | - | chr7_3:66122532-66122551 | Msa1117710:intron | 25.0% |
| ! | AAAATTTATGCAAAGAAGGA+AGG | + | chr7_3:66122576-66122595 | None:intergenic | 25.0% |
| ! | TGGAAAAATTTATGCAAAGA+AGG | + | chr7_3:66122580-66122599 | None:intergenic | 25.0% |
| ! | TTTAAACTACACATCTCAAA+CGG | + | chr7_3:66122670-66122689 | None:intergenic | 25.0% |
| ! | TAAAAAAATCTGCTTGTCAT+TGG | - | chr7_3:66122686-66122705 | Msa1117710:intron | 25.0% |
| ! | CTGAAAGGAAGAAAAAAAAA+TGG | + | chr7_3:66122807-66122826 | None:intergenic | 25.0% |
| !! | CCAAATATTTTCAGATCAAA+AGG | + | chr7_3:66122990-66123009 | None:intergenic | 25.0% |
| !! | CCTTTTGATCTGAAAATATT+TGG | - | chr7_3:66122987-66123006 | Msa1117710:intron | 25.0% |
| ! | GACAAAACAAGTTAAACTTT+GGG | + | chr7_3:66123336-66123355 | None:intergenic | 25.0% |
| ! | AGACAAAACAAGTTAAACTT+TGG | + | chr7_3:66123337-66123356 | None:intergenic | 25.0% |
| !!! | TTCATTTTATGGTTTTGAAG+GGG | - | chr7_3:66123598-66123617 | Msa1117710:intron | 25.0% |
| ! | GTCTTCTATTTAGAAATCTT+GGG | + | chr7_3:66123702-66123721 | None:intergenic | 25.0% |
| ! | TGTCTTCTATTTAGAAATCT+TGG | + | chr7_3:66123703-66123722 | None:intergenic | 25.0% |
| ! | TAAACTGCTCAAATGAAATA+GGG | + | chr7_3:66123900-66123919 | None:intergenic | 25.0% |
| ! | TTAAACTGCTCAAATGAAAT+AGG | + | chr7_3:66123901-66123920 | None:intergenic | 25.0% |
| ! | GGTTAATTCAAAATAGTTAC+CGG | - | chr7_3:66124020-66124039 | Msa1117710:intron | 25.0% |
| ! | GTTAATTCAAAATAGTTACC+GGG | - | chr7_3:66124021-66124040 | Msa1117710:intron | 25.0% |
| !!! | CTTCTTTAGTTGTTTGTTAT+TGG | - | chr7_3:66124415-66124434 | Msa1117710:intron | 25.0% |
| !!! | TCTTTAGTTGTTTGTTATTG+GGG | - | chr7_3:66124417-66124436 | Msa1117710:intron | 25.0% |
| !! | AACCTAAACTTTTATCATAG+TGG | - | chr7_3:66124995-66125014 | Msa1117710:CDS | 25.0% |
| ! | ATTGAAGTTCACAATAACAA+AGG | + | chr7_3:66125197-66125216 | None:intergenic | 25.0% |
| ! | GAACTTCAATTAAATGTATC+TGG | - | chr7_3:66125207-66125226 | Msa1117710:CDS | 25.0% |
| ! | AAAAAACGATGAATTGGATT+CGG | + | chr7_3:66125391-66125410 | None:intergenic | 25.0% |
| TAGTTACAGTGTTTGAGAAT+CGG | + | chr7_3:66120263-66120282 | None:intergenic | 30.0% | |
| !! | GTCATTTTCTGATTTAGATC+TGG | - | chr7_3:66120478-66120497 | Msa1117710:intron | 30.0% |
| ! | TGCCCAAAACTTTTATATTG+TGG | + | chr7_3:66120808-66120827 | None:intergenic | 30.0% |
| ! | ATTAAGACTGGTTAGACATA+AGG | - | chr7_3:66121007-66121026 | Msa1117710:intron | 30.0% |
| !!! | ACATTTTGGTTCATTTAAGG+TGG | - | chr7_3:66121042-66121061 | Msa1117710:CDS | 30.0% |
| GCAGAAAACAAGACAAAATA+AGG | + | chr7_3:66121100-66121119 | None:intergenic | 30.0% | |
| TTCATATATTATCTTGGGGT+GGG | - | chr7_3:66121541-66121560 | Msa1117710:intron | 30.0% | |
| ! | TGTATTTTATGCATATGGCT+GGG | - | chr7_3:66121670-66121689 | Msa1117710:intron | 30.0% |
| ! | TTGATAACAAATTGAAGCAC+TGG | - | chr7_3:66121970-66121989 | Msa1117710:intron | 30.0% |
| TACTACTTTGAATAGTTGTG+GGG | - | chr7_3:66122215-66122234 | Msa1117710:intron | 30.0% | |
| ! | TTCTTTAATTTAGGCGATTG+AGG | + | chr7_3:66122303-66122322 | None:intergenic | 30.0% |
| AATCGCCTAAATTAAAGAAG+AGG | - | chr7_3:66122304-66122323 | Msa1117710:intron | 30.0% | |
| ! | CCTCTTTCTATTTAGTTTAG+GGG | + | chr7_3:66122348-66122367 | None:intergenic | 30.0% |
| ! | CACCTCTTTCTATTTAGTTT+AGG | + | chr7_3:66122350-66122369 | None:intergenic | 30.0% |
| !! | TATTTTTCAGAGCTTATCGT+CGG | + | chr7_3:66122765-66122784 | None:intergenic | 30.0% |
| AGCTAAATATAGCATCTGAA+AGG | + | chr7_3:66122822-66122841 | None:intergenic | 30.0% | |
| AGATCAAAAGGATTAACATG+AGG | + | chr7_3:66122978-66122997 | None:intergenic | 30.0% | |
| !! | AATGTCCAATTTGTTAAGGA+TGG | + | chr7_3:66123090-66123109 | None:intergenic | 30.0% |
| !! | TAAGAAGCATTTAGCGTTAA+AGG | + | chr7_3:66123469-66123488 | None:intergenic | 30.0% |
| !! | GTAATTCTGCTTTTACTGTT+CGG | - | chr7_3:66123724-66123743 | Msa1117710:intron | 30.0% |
| !! | TAATTCTGCTTTTACTGTTC+GGG | - | chr7_3:66123725-66123744 | Msa1117710:intron | 30.0% |
| ! | AGCAGTTTAAGATAGAGTTT+GGG | - | chr7_3:66123911-66123930 | Msa1117710:CDS | 30.0% |
| !!! | ACTGTTACATTTTTGAAACC+CGG | + | chr7_3:66124042-66124061 | None:intergenic | 30.0% |
| CAAAATTGTCAAATGGCTAA+TGG | + | chr7_3:66124143-66124162 | None:intergenic | 30.0% | |
| ACAATCGCAAAATTGTCAAA+TGG | + | chr7_3:66124150-66124169 | None:intergenic | 30.0% | |
| ATCAAGCTAAGCTAAATCAT+GGG | + | chr7_3:66124207-66124226 | None:intergenic | 30.0% | |
| TATCAAGCTAAGCTAAATCA+TGG | + | chr7_3:66124208-66124227 | None:intergenic | 30.0% | |
| ! | AAAATCATAAGCTTCCCTTT+TGG | + | chr7_3:66124261-66124280 | None:intergenic | 30.0% |
| ! | AAGCTTATGATTTTTGTGCT+TGG | - | chr7_3:66124267-66124286 | Msa1117710:intron | 30.0% |
| AGCCACTATGATAAAAGTTT+AGG | + | chr7_3:66125000-66125019 | None:intergenic | 30.0% | |
| ! | CTTTTATCATAGTGGCTTAT+TGG | - | chr7_3:66125003-66125022 | Msa1117710:CDS | 30.0% |
| ! | AGTAAAGGAAAGGATTTTGA+AGG | - | chr7_3:66125061-66125080 | Msa1117710:intron | 30.0% |
| ! | GTAAAGGAAAGGATTTTGAA+GGG | - | chr7_3:66125062-66125081 | Msa1117710:intron | 30.0% |
| ATTTAATTCCACAGCATACA+CGG | + | chr7_3:66125297-66125316 | None:intergenic | 30.0% | |
| AAAAACGATGAATTGGATTC+GGG | + | chr7_3:66125390-66125409 | None:intergenic | 30.0% | |
| TAAGGGAAAAAACGATGAAT+TGG | + | chr7_3:66125397-66125416 | None:intergenic | 30.0% | |
| !!! | ATTCATCGTTTTTTCCCTTA+AGG | - | chr7_3:66125397-66125416 | Msa1117710:five_prime_UTR | 30.0% |
| !!! | ATGTCGATTTTCGAGTACAA+CGG | - | chr7_3:66120088-66120107 | Msa1117710:three_prime_UTR | 35.0% |
| TGAAGAACGTGATATGAAAC+CGG | - | chr7_3:66120407-66120426 | Msa1117710:intron | 35.0% | |
| CTTCTATGCAATACGAGAAA+CGG | - | chr7_3:66120451-66120470 | Msa1117710:intron | 35.0% | |
| CATCACACCAAGTTCTATTA+GGG | + | chr7_3:66120696-66120715 | None:intergenic | 35.0% | |
| !!! | CCAAGTTGCGATTTTAATTG+CGG | - | chr7_3:66120845-66120864 | Msa1117710:intron | 35.0% |
| TGTAAATCTCAATAGCTGTG+TGG | - | chr7_3:66121129-66121148 | Msa1117710:intron | 35.0% | |
| CAGGTATGTAAACAACCAAA+AGG | + | chr7_3:66121293-66121312 | None:intergenic | 35.0% | |
| CAAACCATTCATTTGCACAA+TGG | - | chr7_3:66121481-66121500 | Msa1117710:intron | 35.0% | |
| GTTCATATATTATCTTGGGG+TGG | - | chr7_3:66121540-66121559 | Msa1117710:intron | 35.0% | |
| AGGCATGCTTCTTATACATA+TGG | - | chr7_3:66121641-66121660 | Msa1117710:intron | 35.0% | |
| ATGCTTCTTATACATATGGC+TGG | - | chr7_3:66121645-66121664 | Msa1117710:intron | 35.0% | |
| TGCTTCTTATACATATGGCT+GGG | - | chr7_3:66121646-66121665 | Msa1117710:intron | 35.0% | |
| ! | TGGGCTGTATTTTATGCATA+TGG | - | chr7_3:66121665-66121684 | Msa1117710:intron | 35.0% |
| ! | CTGTATTTTATGCATATGGC+TGG | - | chr7_3:66121669-66121688 | Msa1117710:intron | 35.0% |
| ACATTATGCATTTGTTTGGG+AGG | - | chr7_3:66121707-66121726 | Msa1117710:intron | 35.0% | |
| ! | TTTCAAGTAACTGGAATAGC+TGG | + | chr7_3:66121795-66121814 | None:intergenic | 35.0% |
| !! | CAAATAAAGTGTTGTGGCAA+AGG | + | chr7_3:66122082-66122101 | None:intergenic | 35.0% |
| TCAGTGAAACCTAAGTATAG+AGG | + | chr7_3:66122151-66122170 | None:intergenic | 35.0% | |
| TTCACTGACAGACATGATAA+TGG | - | chr7_3:66122163-66122182 | Msa1117710:intron | 35.0% | |
| TCACTGACAGACATGATAAT+GGG | - | chr7_3:66122164-66122183 | Msa1117710:intron | 35.0% | |
| CCCCTAAACTAAATAGAAAG+AGG | - | chr7_3:66122345-66122364 | Msa1117710:intron | 35.0% | |
| ! | AAGAGGTGTACTTCACAAAA+AGG | - | chr7_3:66122362-66122381 | Msa1117710:intron | 35.0% |
| ! | AGAGGTGTACTTCACAAAAA+GGG | - | chr7_3:66122363-66122382 | Msa1117710:intron | 35.0% |
| TATCCCTCATGACACTTTAT+TGG | - | chr7_3:66122412-66122431 | Msa1117710:intron | 35.0% | |
| TATCCAATAATAACCAAGCG+AGG | - | chr7_3:66122913-66122932 | Msa1117710:intron | 35.0% | |
| TTTCCTCGCTTGGTTATTAT+TGG | + | chr7_3:66122919-66122938 | None:intergenic | 35.0% | |
| AGGTATAAATGTGTGTGTGT+GGG | + | chr7_3:66122958-66122977 | None:intergenic | 35.0% | |
| !! | CCACAATGTCCAATTTGTTA+AGG | + | chr7_3:66123094-66123113 | None:intergenic | 35.0% |
| CCTTAACAAATTGGACATTG+TGG | - | chr7_3:66123091-66123110 | Msa1117710:intron | 35.0% | |
| ! | GTTTTCAAATATCAGTGCCA+TGG | + | chr7_3:66123141-66123160 | None:intergenic | 35.0% |
| !! | GTAGACAGATTTGTTATACG+TGG | + | chr7_3:66123498-66123517 | None:intergenic | 35.0% |
| TTCCAAGAAATTGGAGATTC+AGG | - | chr7_3:66123567-66123586 | Msa1117710:intron | 35.0% | |
| ATCCTGAATCTCCAATTTCT+TGG | + | chr7_3:66123572-66123591 | None:intergenic | 35.0% | |
| ACCACATTGAAAATTGTCGA+GGG | - | chr7_3:66123625-66123644 | Msa1117710:intron | 35.0% | |
| ATTGAAAATTGTCGAGGGAA+AGG | - | chr7_3:66123630-66123649 | Msa1117710:intron | 35.0% | |
| TCTATTTAGAAATCTTGGGC+TGG | + | chr7_3:66123698-66123717 | None:intergenic | 35.0% | |
| ATGAGAATTTGATGCAGGTT+TGG | - | chr7_3:66123772-66123791 | Msa1117710:intron | 35.0% | |
| TGGAGGGATATTTCTTAAAC+AGG | - | chr7_3:66123792-66123811 | Msa1117710:intron | 35.0% | |
| ! | GAGCAGTTTAAGATAGAGTT+TGG | - | chr7_3:66123910-66123929 | Msa1117710:CDS | 35.0% |
| TGAGACGTTCTTTAGTGTAA+AGG | - | chr7_3:66124092-66124111 | Msa1117710:intron | 35.0% | |
| GAGACGTTCTTTAGTGTAAA+GGG | - | chr7_3:66124093-66124112 | Msa1117710:intron | 35.0% | |
| ! | GGAATCTGAGATTCAAATAG+AGG | - | chr7_3:66124114-66124133 | Msa1117710:intron | 35.0% |
| TCAAGCTAAGCTAAATCATG+GGG | + | chr7_3:66124206-66124225 | None:intergenic | 35.0% | |
| TTTCTCCATGTTTGCCAAAA+GGG | - | chr7_3:66124244-66124263 | Msa1117710:intron | 35.0% | |
| TGTGCTTGGTTTCTTATTAC+AGG | - | chr7_3:66124281-66124300 | Msa1117710:intron | 35.0% | |
| TTTCTTATTACAGGAAGCTG+AGG | - | chr7_3:66124290-66124309 | Msa1117710:intron | 35.0% | |
| ATGCACTAGTTCATCTTACT+AGG | - | chr7_3:66124505-66124524 | Msa1117710:intron | 35.0% | |
| ACTAGTTCATCTTACTAGGT+TGG | - | chr7_3:66124509-66124528 | Msa1117710:intron | 35.0% | |
| ATGCACTAGTTCATCTTACT+AGG | - | chr7_3:66124505-66124524 | Msa1117710:intron | 35.0% | |
| ACTAGTTCATCTTACTAGGT+TGG | - | chr7_3:66124509-66124528 | Msa1117710:intron | 35.0% | |
| ! | AAATGATTTTCCACATGCGA+AGG | + | chr7_3:66124634-66124653 | None:intergenic | 35.0% |
| ATCCTTTCCTTTACTTCTGT+TGG | + | chr7_3:66125056-66125075 | None:intergenic | 35.0% | |
| !! | AAGGATTTTGAAGGGAAGAA+TGG | - | chr7_3:66125070-66125089 | Msa1117710:intron | 35.0% |
| ACTTGAAGTAGTTGATCAGA+TGG | + | chr7_3:66125109-66125128 | None:intergenic | 35.0% | |
| CTGTTTAATTCTGAGCTGAA+TGG | - | chr7_3:66125141-66125160 | Msa1117710:intron | 35.0% | |
| TATGTACCATCCGTTGTTAA+TGG | - | chr7_3:66125168-66125187 | Msa1117710:CDS | 35.0% | |
| ATGTACCATCCGTTGTTAAT+GGG | - | chr7_3:66125169-66125188 | Msa1117710:CDS | 35.0% | |
| !! | ACAAAGGTACCCATTAACAA+CGG | + | chr7_3:66125181-66125200 | None:intergenic | 35.0% |
| ! | TTTTCAGTGAAAGTAGACTC+TGG | - | chr7_3:66125269-66125288 | Msa1117710:CDS | 35.0% |
| AAAACGATGAATTGGATTCG+GGG | + | chr7_3:66125389-66125408 | None:intergenic | 35.0% | |
| GTTGTACTCGAAAATCGACA+TGG | + | chr7_3:66120089-66120108 | None:intergenic | 40.0% | |
| ! | TCTTTGGAAATCGGTAGCTA+TGG | + | chr7_3:66120191-66120210 | None:intergenic | 40.0% |
| AAACTCTTCATCGGTCTTTC+TGG | - | chr7_3:66120229-66120248 | Msa1117710:three_prime_UTR | 40.0% | |
| TTACAGTGTTTGAGAATCGG+TGG | + | chr7_3:66120260-66120279 | None:intergenic | 40.0% | |
| GACACAACCCTAATAGAACT+TGG | - | chr7_3:66120686-66120705 | Msa1117710:intron | 40.0% | |
| GCATCACACCAAGTTCTATT+AGG | + | chr7_3:66120697-66120716 | None:intergenic | 40.0% | |
| AGTGTTAGACGTAAAGGGAT+TGG | - | chr7_3:66120741-66120760 | Msa1117710:intron | 40.0% | |
| GTGTTAGACGTAAAGGGATT+GGG | - | chr7_3:66120742-66120761 | Msa1117710:intron | 40.0% | |
| ! | TAGTTAGGTTGCAAAGTGCA+TGG | - | chr7_3:66120769-66120788 | Msa1117710:intron | 40.0% |
| CCGCAATTAAAATCGCAACT+TGG | + | chr7_3:66120848-66120867 | None:intergenic | 40.0% | |
| TGTGTGGAGTGTATTTGCAT+TGG | - | chr7_3:66121145-66121164 | Msa1117710:intron | 40.0% | |
| GTGTGGAGTGTATTTGCATT+GGG | - | chr7_3:66121146-66121165 | Msa1117710:intron | 40.0% | |
| GTATTTGCATTGGGTGTTTG+TGG | - | chr7_3:66121155-66121174 | Msa1117710:intron | 40.0% | |
| ATTACAGGCTGGCAAAAGTA+TGG | + | chr7_3:66121440-66121459 | None:intergenic | 40.0% | |
| AGCCTGTAATTGCTGGATTA+GGG | - | chr7_3:66121450-66121469 | Msa1117710:intron | 40.0% | |
| ATATATTATCTTGGGGTGGG+AGG | - | chr7_3:66121544-66121563 | Msa1117710:intron | 40.0% | |
| ! | AGTCTGGAACTAGTAAAGCT+CGG | + | chr7_3:66121771-66121790 | None:intergenic | 40.0% |
| TAGAGCGACAGAAACAACAA+AGG | - | chr7_3:66121942-66121961 | Msa1117710:intron | 40.0% | |
| AGCATGTTGCCTCTATACTT+AGG | - | chr7_3:66122139-66122158 | Msa1117710:CDS | 40.0% | |
| ! | CAAAGTAGTAATAGTGGGGT+TGG | + | chr7_3:66122205-66122224 | None:intergenic | 40.0% |
| GAGGTGTACTTCACAAAAAG+GGG | - | chr7_3:66122364-66122383 | Msa1117710:intron | 40.0% | |
| AGGTGTACTTCACAAAAAGG+GGG | - | chr7_3:66122365-66122384 | Msa1117710:intron | 40.0% | |
| AAGTGTCATGAGGGATATCA+TGG | + | chr7_3:66122409-66122428 | None:intergenic | 40.0% | |
| ! | GCACCAATAAAGTGTCATGA+GGG | + | chr7_3:66122418-66122437 | None:intergenic | 40.0% |
| ! | AGCACCAATAAAGTGTCATG+AGG | + | chr7_3:66122419-66122438 | None:intergenic | 40.0% |
| ! | TATTGGTGCTTTGTTACCAG+TGG | - | chr7_3:66122429-66122448 | Msa1117710:intron | 40.0% |
| GTGCTATCTCAATAACAGCT+TGG | + | chr7_3:66122725-66122744 | None:intergenic | 40.0% | |
| TATAAATGTGTGTGTGTGGG+GGG | + | chr7_3:66122955-66122974 | None:intergenic | 40.0% | |
| GTATAAATGTGTGTGTGTGG+GGG | + | chr7_3:66122956-66122975 | None:intergenic | 40.0% | |
| GGTATAAATGTGTGTGTGTG+GGG | + | chr7_3:66122957-66122976 | None:intergenic | 40.0% | |
| GAGGTATAAATGTGTGTGTG+TGG | + | chr7_3:66122959-66122978 | None:intergenic | 40.0% | |
| !! | GTCCAATTTGTTAAGGATGG+CGG | + | chr7_3:66123087-66123106 | None:intergenic | 40.0% |
| TCAAATATCAGTGCCATGGT+GGG | + | chr7_3:66123137-66123156 | None:intergenic | 40.0% | |
| TTCAAATATCAGTGCCATGG+TGG | + | chr7_3:66123138-66123157 | None:intergenic | 40.0% | |
| !! | GCAAAAGACTTTGTTGTTGC+TGG | - | chr7_3:66123249-66123268 | Msa1117710:intron | 40.0% |
| ACAAGCACCATACAAAGACT+CGG | + | chr7_3:66123283-66123302 | None:intergenic | 40.0% | |
| ATCGATGTTTAAGCCTGACA+TGG | - | chr7_3:66123305-66123324 | Msa1117710:intron | 40.0% | |
| AACAAATCTGTCTACACGCT+TGG | - | chr7_3:66123503-66123522 | Msa1117710:intron | 40.0% | |
| TGAGGTGGTTTCCAAGAAAT+TGG | - | chr7_3:66123558-66123577 | Msa1117710:intron | 40.0% | |
| ! | CTCGACAATTTTCAATGTGG+TGG | + | chr7_3:66123626-66123645 | None:intergenic | 40.0% |
| CACCACATTGAAAATTGTCG+AGG | - | chr7_3:66123624-66123643 | Msa1117710:intron | 40.0% | |
| ! | TCCCTCGACAATTTTCAATG+TGG | + | chr7_3:66123629-66123648 | None:intergenic | 40.0% |
| TGGAAATTAAACCAGCACCA+TGG | + | chr7_3:66123678-66123697 | None:intergenic | 40.0% | |
| CAAGCATGAGAATTTGATGC+AGG | - | chr7_3:66123767-66123786 | Msa1117710:intron | 40.0% | |
| AGAATTTGATGCAGGTTTGG+AGG | - | chr7_3:66123775-66123794 | Msa1117710:intron | 40.0% | |
| GAATTTGATGCAGGTTTGGA+GGG | - | chr7_3:66123776-66123795 | Msa1117710:intron | 40.0% | |
| ! | GAAAAGCACACTTAGATCCA+GGG | - | chr7_3:66123814-66123833 | Msa1117710:intron | 40.0% |
| ACTACAAAGCTCAACCACTA+AGG | - | chr7_3:66123853-66123872 | Msa1117710:intron | 40.0% | |
| TAGAGTTTGGGCTACATTCT+AGG | - | chr7_3:66123923-66123942 | Msa1117710:CDS | 40.0% | |
| AGAGTTTGGGCTACATTCTA+GGG | - | chr7_3:66123924-66123943 | Msa1117710:CDS | 40.0% | |
| AGCAACAAGCAGAAAAGATC+AGG | - | chr7_3:66123998-66124017 | Msa1117710:intron | 40.0% | |
| GCAACAAGCAGAAAAGATCA+GGG | - | chr7_3:66123999-66124018 | Msa1117710:intron | 40.0% | |
| ! | TCTCACTTCCAATCTGAAGT+CGG | + | chr7_3:66124077-66124096 | None:intergenic | 40.0% |
| GTTTCTCCATGTTTGCCAAA+AGG | - | chr7_3:66124243-66124262 | Msa1117710:intron | 40.0% | |
| TACAGACGATAACAGTGCTT+GGG | + | chr7_3:66124334-66124353 | None:intergenic | 40.0% | |
| ! | TAGTGATTTTCCACATGCGA+AGG | + | chr7_3:66124549-66124568 | None:intergenic | 40.0% |
| GCTGCAGCAAACAAAATTTG+AGG | + | chr7_3:66125030-66125049 | None:intergenic | 40.0% | |
| CTCCAACAGAAGTAAAGGAA+AGG | - | chr7_3:66125051-66125070 | Msa1117710:intron | 40.0% | |
| GAAGCAATTCTTGCCAACCA+TGG | + | chr7_3:66120128-66120147 | None:intergenic | 45.0% | |
| GGTATCAGCGTCTTGTGTTT+CGG | - | chr7_3:66120364-66120383 | Msa1117710:intron | 45.0% | |
| ACCAAGCTAGCAAAAGTCTC+CGG | + | chr7_3:66120429-66120448 | None:intergenic | 45.0% | |
| AAGGGATTGGGTCGTTAGTT+AGG | - | chr7_3:66120754-66120773 | Msa1117710:intron | 45.0% | |
| !! | CAGGGTATTGTCTTGTAGAC+TGG | - | chr7_3:66120950-66120969 | Msa1117710:intron | 45.0% |
| ! | CATTGGGTGTTTGTGGACTA+GGG | - | chr7_3:66121162-66121181 | Msa1117710:intron | 45.0% |
| ! | TTTTGCCAGCCTGTAATTGC+TGG | - | chr7_3:66121443-66121462 | Msa1117710:intron | 45.0% |
| CTAATCCAGCAATTACAGGC+TGG | + | chr7_3:66121451-66121470 | None:intergenic | 45.0% | |
| CAGCCTGTAATTGCTGGATT+AGG | - | chr7_3:66121449-66121468 | Msa1117710:intron | 45.0% | |
| ! | GCCTGTAATTGCTGGATTAG+GGG | - | chr7_3:66121451-66121470 | Msa1117710:intron | 45.0% |
| TCCCCTAATCCAGCAATTAC+AGG | + | chr7_3:66121455-66121474 | None:intergenic | 45.0% | |
| GCGTCCATTGTGCAAATGAA+TGG | + | chr7_3:66121488-66121507 | None:intergenic | 45.0% | |
| ATTTGCACAATGGACGCGAT+TGG | - | chr7_3:66121491-66121510 | Msa1117710:intron | 45.0% | |
| AACTGGAATAGCTGGAAGTC+TGG | + | chr7_3:66121787-66121806 | None:intergenic | 45.0% | |
| TAGGCGATTGAGGTGAGAAA+TGG | + | chr7_3:66122293-66122312 | None:intergenic | 45.0% | |
| TCATGAGGGATATCATGGTC+AGG | + | chr7_3:66122404-66122423 | None:intergenic | 45.0% | |
| !! | TTGGGAAAAGGCTCTAGAAG+CGG | + | chr7_3:66122455-66122474 | None:intergenic | 45.0% |
| !!! | GGGTCAATTTTTTCCTCGCT+TGG | + | chr7_3:66122929-66122948 | None:intergenic | 45.0% |
| ATAAATGTGTGTGTGTGGGG+GGG | + | chr7_3:66122954-66122973 | None:intergenic | 45.0% | |
| TGCCGCCATCCTTAACAAAT+TGG | - | chr7_3:66123082-66123101 | Msa1117710:intron | 45.0% | |
| !! | ACTTTGGGACAAACCATGTC+AGG | + | chr7_3:66123321-66123340 | None:intergenic | 45.0% |
| TCTACACGCTTGGTATCTGT+GGG | - | chr7_3:66123513-66123532 | Msa1117710:intron | 45.0% | |
| ATCAAGCCTTCATCATGAGG+TGG | - | chr7_3:66123543-66123562 | Msa1117710:intron | 45.0% | |
| TGGAAACCACCTCATGATGA+AGG | + | chr7_3:66123552-66123571 | None:intergenic | 45.0% | |
| ! | GGAAAAGCACACTTAGATCC+AGG | - | chr7_3:66123813-66123832 | Msa1117710:intron | 45.0% |
| CTTCCTATAGAACTTGCACG+TGG | + | chr7_3:66123950-66123969 | None:intergenic | 45.0% | |
| ATCGATGATTGTACTGCTGC+TGG | - | chr7_3:66123970-66123989 | Msa1117710:CDS | 45.0% | |
| TCGATGATTGTACTGCTGCT+GGG | - | chr7_3:66123971-66123990 | Msa1117710:CDS | 45.0% | |
| TGCAATGTCCGACTTCAGAT+TGG | - | chr7_3:66124066-66124085 | Msa1117710:intron | 45.0% | |
| ! | AGCTTCCCTTTTGGCAAACA+TGG | + | chr7_3:66124252-66124271 | None:intergenic | 45.0% |
| CTACAGACGATAACAGTGCT+TGG | + | chr7_3:66124335-66124354 | None:intergenic | 45.0% | |
| ! | AAGACTTTTGCCTTCGCATG+TGG | - | chr7_3:66124536-66124555 | Msa1117710:intron | 45.0% |
| ! | AAGACTTTTGCCTTCGCATG+TGG | - | chr7_3:66124536-66124555 | Msa1117710:intron | 45.0% |
| CAGCACTCCAACAGAAGTAA+AGG | - | chr7_3:66125046-66125065 | Msa1117710:intron | 45.0% | |
| AGGTACCCATTAACAACGGA+TGG | + | chr7_3:66125177-66125196 | None:intergenic | 45.0% | |
| !! | TTTATTAAAAAAAGAAATAA+TGG | - | chr7_3:66122622-66122641 | Msa1117710:intron | 5.0% |
| CTTGCCAACCATGGCTACTA+GGG | + | chr7_3:66120119-66120138 | None:intergenic | 50.0% | |
| TCTTGCCAACCATGGCTACT+AGG | + | chr7_3:66120120-66120139 | None:intergenic | 50.0% | |
| ATTGCCAGCGATCGAAGACT+CGG | - | chr7_3:66120151-66120170 | Msa1117710:three_prime_UTR | 50.0% | |
| ! | ACCGGAGACTTTTGCTAGCT+TGG | - | chr7_3:66120425-66120444 | Msa1117710:intron | 50.0% |
| ACTTGGTTGCAGTCTTGCAG+AGG | + | chr7_3:66120831-66120850 | None:intergenic | 50.0% | |
| GCATTGGGTGTTTGTGGACT+AGG | - | chr7_3:66121161-66121180 | Msa1117710:intron | 50.0% | |
| GCATTTGTTTGGGAGGTCTG+TGG | - | chr7_3:66121714-66121733 | Msa1117710:intron | 50.0% | |
| TGTACTCAGTCACAGCCTGT+GGG | - | chr7_3:66122243-66122262 | Msa1117710:intron | 50.0% | |
| CCTGTGGGTGGCAAACATAT+CGG | - | chr7_3:66122258-66122277 | Msa1117710:intron | 50.0% | |
| CTGTGGGTGGCAAACATATC+GGG | - | chr7_3:66122259-66122278 | Msa1117710:intron | 50.0% | |
| GGGCTCTACGTATTGGGAAA+AGG | + | chr7_3:66122467-66122486 | None:intergenic | 50.0% | |
| AAAGCTGCCATTCACCGTTG+GGG | + | chr7_3:66122487-66122506 | None:intergenic | 50.0% | |
| CAAAGCTGCCATTCACCGTT+GGG | + | chr7_3:66122488-66122507 | None:intergenic | 50.0% | |
| TAAATGTGTGTGTGTGGGGG+GGG | + | chr7_3:66122953-66122972 | None:intergenic | 50.0% | |
| ! | TGTTAAGGATGGCGGCATTG+CGG | + | chr7_3:66123079-66123098 | None:intergenic | 50.0% |
| ACTGCGTCCGAGTCTTTGTA+TGG | - | chr7_3:66123273-66123292 | Msa1117710:intron | 50.0% | |
| GTCTACACGCTTGGTATCTG+TGG | - | chr7_3:66123512-66123531 | Msa1117710:intron | 50.0% | |
| GGCATCAAGCCTTCATCATG+AGG | - | chr7_3:66123540-66123559 | Msa1117710:intron | 50.0% | |
| !! | ATTGTCGAGGGAAAGGCACT+TGG | - | chr7_3:66123637-66123656 | Msa1117710:intron | 50.0% |
| !! | GAGGGAAAGGCACTTGGTTA+TGG | - | chr7_3:66123643-66123662 | Msa1117710:intron | 50.0% |
| !! | CTGCTTTTACTGTTCGGGCT+TGG | - | chr7_3:66123730-66123749 | Msa1117710:intron | 50.0% |
| AGATCCAGGGCATATCTCTG+TGG | - | chr7_3:66123827-66123846 | Msa1117710:intron | 50.0% | |
| GATCCAGGGCATATCTCTGT+GGG | - | chr7_3:66123828-66123847 | Msa1117710:intron | 50.0% | |
| TTACCCACAGAGATATGCCC+TGG | + | chr7_3:66123834-66123853 | None:intergenic | 50.0% | |
| CTCAACCACTAAGGATCAGC+AGG | - | chr7_3:66123862-66123881 | Msa1117710:intron | 50.0% | |
| CGATAACAGTGCTTGGGAGA+TGG | + | chr7_3:66124328-66124347 | None:intergenic | 50.0% | |
| GTAGACCGTGACTGTCTTAG+TGG | - | chr7_3:66124351-66124370 | Msa1117710:intron | 50.0% | |
| ACCGTGACTGTCTTAGTGGA+TGG | - | chr7_3:66124355-66124374 | Msa1117710:intron | 50.0% | |
| CCCATCCACTAAGACAGTCA+CGG | + | chr7_3:66124359-66124378 | None:intergenic | 50.0% | |
| ! | CCGTGACTGTCTTAGTGGAT+GGG | - | chr7_3:66124356-66124375 | Msa1117710:intron | 50.0% |
| ! | CGTGACTGTCTTAGTGGATG+GGG | - | chr7_3:66124357-66124376 | Msa1117710:intron | 50.0% |
| AGTGCCCTAGTAGCCATGGT+TGG | - | chr7_3:66120112-66120131 | Msa1117710:three_prime_UTR | 55.0% | |
| GAGTCTTCGATCGCTGGCAA+TGG | + | chr7_3:66120152-66120171 | None:intergenic | 55.0% | |
| AACACCGAGTCTTCGATCGC+TGG | + | chr7_3:66120158-66120177 | None:intergenic | 55.0% | |
| GTGTACTCAGTCACAGCCTG+TGG | - | chr7_3:66122242-66122261 | Msa1117710:intron | 55.0% | |
| CCGATATGTTTGCCACCCAC+AGG | + | chr7_3:66122261-66122280 | None:intergenic | 55.0% | |
| CCGTTGGGGCTCTACGTATT+GGG | + | chr7_3:66122473-66122492 | None:intergenic | 55.0% | |
| CCCAATACGTAGAGCCCCAA+CGG | - | chr7_3:66122470-66122489 | Msa1117710:intron | 55.0% | |
| ACCGTTGGGGCTCTACGTAT+TGG | + | chr7_3:66122474-66122493 | None:intergenic | 55.0% | |
| GCAAAGCTGCCATTCACCGT+TGG | + | chr7_3:66122489-66122508 | None:intergenic | 55.0% | |
| AAATGTGTGTGTGTGGGGGG+GGG | + | chr7_3:66122952-66122971 | None:intergenic | 55.0% | |
| ! | GTGTTTTACGGCGGCTTGAG+GGG | + | chr7_3:66123057-66123076 | None:intergenic | 55.0% |
| ! | GGTGTTTTACGGCGGCTTGA+GGG | + | chr7_3:66123058-66123077 | None:intergenic | 55.0% |
| ! | GGCATTGCGGTGTTTTACGG+CGG | + | chr7_3:66123066-66123085 | None:intergenic | 55.0% |
| ! | GGCGGCATTGCGGTGTTTTA+CGG | + | chr7_3:66123069-66123088 | None:intergenic | 55.0% |
| CGCTTGGTATCTGTGGGTGA+AGG | - | chr7_3:66123519-66123538 | Msa1117710:intron | 55.0% | |
| GGTTATGGACCTGCACTCCA+TGG | - | chr7_3:66123658-66123677 | Msa1117710:intron | 55.0% | |
| AAACCAGCACCATGGAGTGC+AGG | + | chr7_3:66123670-66123689 | None:intergenic | 55.0% | |
| CAGCACCTGCTGATCCTTAG+TGG | + | chr7_3:66123870-66123889 | None:intergenic | 55.0% | |
| GGGCCACGTGCAAGTTCTAT+AGG | - | chr7_3:66123944-66123963 | Msa1117710:CDS | 55.0% | |
| ! | GACTGTCTTAGTGGATGGGG+TGG | - | chr7_3:66124360-66124379 | Msa1117710:intron | 55.0% |
| !! | CTCTGGAACCGTGTATGCTG+TGG | - | chr7_3:66125286-66125305 | Msa1117710:CDS | 55.0% |
| !! | CGGAAGTGCCCTAGTAGCCA+TGG | - | chr7_3:66120108-66120127 | Msa1117710:three_prime_UTR | 60.0% |
| ACTCAGTCACAGCCTGTGGG+TGG | - | chr7_3:66122246-66122265 | Msa1117710:intron | 60.0% | |
| !! | AAGGCTCTAGAAGCGGCCAC+TGG | + | chr7_3:66122448-66122467 | None:intergenic | 60.0% |
| CGTAGAGCCCCAACGGTGAA+TGG | - | chr7_3:66122477-66122496 | Msa1117710:intron | 60.0% | |
| AATGTGTGTGTGTGGGGGGG+GGG | + | chr7_3:66122951-66122970 | None:intergenic | 60.0% | |
| ! | CGGTGTTTTACGGCGGCTTG+AGG | + | chr7_3:66123059-66123078 | None:intergenic | 60.0% |
| !! | ATCAGTGCCATGGTGGGCTG+CGG | + | chr7_3:66123131-66123150 | None:intergenic | 60.0% |
| GTTCGGGCTTGGACACAAGC+TGG | - | chr7_3:66123741-66123760 | Msa1117710:intron | 60.0% | |
| ATGTGTGTGTGTGGGGGGGG+GGG | + | chr7_3:66122950-66122969 | None:intergenic | 65.0% | |
| GGACCTGCACTCCATGGTGC+TGG | - | chr7_3:66123664-66123683 | Msa1117710:intron | 65.0% | |
| TGTGTGTGTGTGGGGGGGGG+GGG | + | chr7_3:66122949-66122968 | None:intergenic | 70.0% | |
| TCTGCCACCGCAGCCCACCA+TGG | - | chr7_3:66123121-66123140 | Msa1117710:intron | 70.0% | |
| !! | AGTGCCATGGTGGGCTGCGG+TGG | + | chr7_3:66123128-66123147 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 66119993 | 66125430 | 66119993 | ID=Msa1117710;Name=Msa1117710 |
| chr7_3 | mRNA | 66119993 | 66125430 | 66119993 | ID=Msa1117710-mRNA-1;Parent=Msa1117710;Name=Msa1117710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=95|1|1|1|0.6|1|6|333|204 |
| chr7_3 | exon | 66119993 | 66120374 | 66119993 | ID=Msa1117710-mRNA-1:exon:15890;Parent=Msa1117710-mRNA-1 |
| chr7_3 | exon | 66121026 | 66121120 | 66121026 | ID=Msa1117710-mRNA-1:exon:15889;Parent=Msa1117710-mRNA-1 |
| chr7_3 | exon | 66122097 | 66122181 | 66122097 | ID=Msa1117710-mRNA-1:exon:15888;Parent=Msa1117710-mRNA-1 |
| chr7_3 | exon | 66123904 | 66123993 | 66123904 | ID=Msa1117710-mRNA-1:exon:15887;Parent=Msa1117710-mRNA-1 |
| chr7_3 | exon | 66124951 | 66125058 | 66124951 | ID=Msa1117710-mRNA-1:exon:15886;Parent=Msa1117710-mRNA-1 |
| chr7_3 | exon | 66125148 | 66125430 | 66125148 | ID=Msa1117710-mRNA-1:exon:15885;Parent=Msa1117710-mRNA-1 |
| chr7_3 | five_prime_UTR | 66125336 | 66125430 | 66125336 | ID=Msa1117710-mRNA-1:five_prime_utr;Parent=Msa1117710-mRNA-1 |
| chr7_3 | CDS | 66125148 | 66125335 | 66125148 | ID=Msa1117710-mRNA-1:cds;Parent=Msa1117710-mRNA-1 |
| chr7_3 | CDS | 66124951 | 66125058 | 66124951 | ID=Msa1117710-mRNA-1:cds;Parent=Msa1117710-mRNA-1 |
| chr7_3 | CDS | 66123904 | 66123993 | 66123904 | ID=Msa1117710-mRNA-1:cds;Parent=Msa1117710-mRNA-1 |
| chr7_3 | CDS | 66122097 | 66122181 | 66122097 | ID=Msa1117710-mRNA-1:cds;Parent=Msa1117710-mRNA-1 |
| chr7_3 | CDS | 66121026 | 66121120 | 66121026 | ID=Msa1117710-mRNA-1:cds;Parent=Msa1117710-mRNA-1 |
| chr7_3 | CDS | 66120326 | 66120374 | 66120326 | ID=Msa1117710-mRNA-1:cds;Parent=Msa1117710-mRNA-1 |
| chr7_3 | three_prime_UTR | 66119993 | 66120325 | 66119993 | ID=Msa1117710-mRNA-1:three_prime_utr;Parent=Msa1117710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
