AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081650 MtrunA17_Chr1g0194261 99.448 181 1 0 1 181 1 181 7.25e-135 374
Msa0081650 MtrunA17_Chr5g0413451 98.895 181 2 0 1 181 1 181 2.08e-134 373
Msa0081650 MtrunA17_Chr5g0413441 98.895 181 2 0 1 181 1 181 2.08e-134 373
Msa0081650 MtrunA17_Chr7g0270301 99.444 180 1 0 1 180 1 180 2.59e-134 373
Msa0081650 MtrunA17_Chr6g0450081 98.343 181 3 0 1 181 1 181 8.66e-134 371
Msa0081650 MtrunA17_Chr5g0401761 86.188 181 25 0 1 181 1 181 1.67e-120 338
Msa0081650 MtrunA17_Chr4g0072861 63.277 177 65 0 1 177 1 177 4.74e-84 246
Msa0081650 MtrunA17_Chr5g0395631 61.582 177 68 0 1 177 1 177 6.18e-83 243
Msa0081650 MtrunA17_Chr4g0039591 60.452 177 70 0 1 177 1 177 1.17e-80 238
Msa0081650 MtrunA17_Chr5g0395641 54.839 186 82 1 1 184 1 186 7.96e-76 225
Msa0081650 MtrunA17_Chr1g0188111 51.667 180 87 0 1 180 1 180 6.25e-67 202
Msa0081650 MtrunA17_Chr8g0373271 48.193 166 83 3 18 181 17 181 2.95e-50 160
Msa0081650 MtrunA17_Chr2g0287721 33.862 189 114 2 5 184 5 191 1.19e-37 129
Msa0081650 MtrunA17_Chr5g0434561 34.659 176 112 2 1 173 1 176 3.20e-31 111
Msa0081650 MtrunA17_Chr5g0395651 63.291 79 27 1 1 77 1 79 9.22e-31 107
Msa0081650 MtrunA17_Chr5g0401071 32.240 183 121 2 1 180 1 183 5.09e-30 108
Msa0081650 MtrunA17_Chr4g0012371 31.847 157 106 1 18 173 1 157 4.40e-26 97.8
Msa0081650 MtrunA17_Chr2g0294701 31.638 177 105 2 15 177 18 192 9.47e-25 95.5
Msa0081650 MtrunA17_Chr7g0271761 31.073 177 106 2 15 177 18 192 2.32e-24 94.4
Msa0081650 MtrunA17_Chr4g0068171 31.638 177 105 2 15 177 18 192 6.64e-23 90.5
Msa0081650 MtrunA17_Chr5g0395671 49.057 53 27 0 132 184 44 96 5.95e-13 62.0
Msa0081650 MtrunA17_Chr1g0180291 34.118 85 52 1 18 98 15 99 1.94e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081650 AT5G14670.1 98.901 182 2 0 1 182 1 182 2.17e-134 374
Msa0081650 AT1G10630.1 98.343 181 3 0 1 181 1 181 1.54e-133 371
Msa0081650 AT1G10630.2 98.343 181 3 0 1 181 1 181 1.54e-133 371
Msa0081650 AT5G14670.2 98.343 181 3 0 1 181 1 181 3.21e-133 370
Msa0081650 AT5G14670.3 98.343 181 3 0 1 181 1 181 3.21e-133 370
Msa0081650 AT3G62290.3 98.343 181 3 0 1 181 1 181 3.28e-133 370
Msa0081650 AT3G62290.1 98.343 181 3 0 1 181 1 181 3.28e-133 370
Msa0081650 AT3G62290.2 98.343 181 3 0 1 181 1 181 3.28e-133 370
Msa0081650 AT1G23490.1 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.2 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.7 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.4 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.3 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.1 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.6 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT1G70490.5 98.343 181 3 0 1 181 1 181 3.43e-133 370
Msa0081650 AT2G47170.2 98.343 181 3 0 1 181 1 181 4.77e-133 370
Msa0081650 AT2G47170.1 98.343 181 3 0 1 181 1 181 4.77e-133 370
Msa0081650 AT2G47170.3 98.343 181 3 0 1 181 1 181 4.77e-133 370
Msa0081650 AT2G15310.1 67.778 180 58 0 1 180 1 180 2.90e-91 265
Msa0081650 AT2G24765.1 62.147 177 67 0 1 177 1 177 1.90e-84 247
Msa0081650 AT5G17060.2 58.659 179 74 0 1 179 1 179 2.23e-81 239
Msa0081650 AT5G17060.1 58.659 179 74 0 1 179 1 179 2.23e-81 239
Msa0081650 AT3G03120.1 59.887 177 71 0 1 177 1 177 1.48e-80 238
Msa0081650 AT3G22950.1 51.913 183 88 0 1 183 1 183 3.29e-70 211
Msa0081650 AT3G22950.2 51.913 183 88 0 1 183 1 183 3.29e-70 211
Msa0081650 AT2G24765.2 64.844 128 45 0 1 128 1 128 1.86e-60 184
Msa0081650 AT3G03120.2 62.308 130 49 0 1 130 1 130 1.38e-59 182
Msa0081650 AT1G02430.1 48.936 188 82 5 1 176 1 186 8.95e-57 177
Msa0081650 AT1G02440.1 45.699 186 91 4 1 176 1 186 2.46e-55 174
Msa0081650 AT2G18390.1 48.193 166 83 3 18 181 17 181 1.77e-49 158
Msa0081650 AT1G02430.2 47.205 161 75 4 1 153 1 159 3.32e-45 147
Msa0081650 AT5G52210.1 33.155 187 118 1 5 184 5 191 3.07e-36 125
Msa0081650 AT5G52210.2 33.155 187 118 1 5 184 5 191 3.07e-36 125
Msa0081650 AT3G49870.1 33.333 183 119 2 1 180 1 183 2.00e-32 115
Msa0081650 AT5G67560.1 33.742 163 107 1 12 173 14 176 2.66e-31 112
Msa0081650 AT5G37680.1 33.523 176 114 2 1 173 1 176 2.27e-30 110
Msa0081650 AT3G49870.2 33.121 157 104 1 18 173 1 157 5.40e-29 105
Msa0081650 AT3G49860.1 32.530 166 111 1 16 180 10 175 2.44e-28 104
Msa0081650 AT1G02440.2 33.117 154 67 3 1 153 1 119 4.41e-26 97.1
Msa0081650 AT1G09180.1 32.961 179 104 2 13 177 16 192 3.23e-25 97.1
Msa0081650 AT3G62560.1 31.638 177 105 2 15 177 18 192 1.78e-24 95.1
Msa0081650 AT5G37680.2 32.812 128 86 0 46 173 2 129 5.46e-24 92.0
Msa0081650 AT4G02080.1 31.073 177 106 2 15 177 18 192 5.52e-24 93.6
Msa0081650 AT1G56330.1 31.638 177 105 2 15 177 18 192 5.63e-24 93.6

Find 55 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGAGTCCTTGTGTATTT+TGG 0.168116 1_2:-60311765 None:intergenic
GATAAACACGTTACTCAATT+TGG 0.219430 1_2:+60310266 Msa0081650:five_prime_UTR
TTGTATTCCCATTGGGAATC+AGG 0.280658 1_2:-60310235 None:intergenic
AAGTATACGCATCTCTTTCT+TGG 0.288003 1_2:-60310842 None:intergenic
GGATTCAGAAAAGTTGAAAA+TGG 0.318550 1_2:+60310783 Msa0081650:intron
AATCATTTCTCTCTTCTTCA+AGG 0.351699 1_2:+60310394 Msa0081650:five_prime_UTR
TCAGCAGCATTCATAGCATT+TGG 0.364943 1_2:-60312113 None:intergenic
AGAACATCAGCTTCACTGTC+TGG 0.385102 1_2:+60311062 Msa0081650:CDS
GAAAGAGATGCGTATACTTA+TGG 0.386945 1_2:+60310846 Msa0081650:CDS
CAGAGCACATGTGCCACATC+TGG 0.396061 1_2:+60312282 Msa0081650:CDS
GATTCAGAAAAGTTGAAAAT+GGG 0.407021 1_2:+60310784 Msa0081650:intron
CAGATGTGGCACATGTGCTC+TGG 0.412762 1_2:-60312281 None:intergenic
ATTCTTTATAAGCTCAAGCT+TGG 0.418391 1_2:+60310898 Msa0081650:CDS
AATTGAGTAACGTGTTTATC+CGG 0.433601 1_2:-60310263 None:intergenic
GGTGTCTTTGTATTCCCATT+GGG 0.443811 1_2:-60310242 None:intergenic
CGGTGTCTTTGTATTCCCAT+TGG 0.447956 1_2:-60310243 None:intergenic
TTGGAGTTTCTCTCAACGTC+AGG 0.452967 1_2:-60310325 None:intergenic
CATTGGGAATCAGGTGTAAC+CGG 0.453162 1_2:-60310226 None:intergenic
TGTCTGGGATGTCGGAGGTC+AGG 0.455909 1_2:+60311078 Msa0081650:CDS
ACTCTCTCCGTCAGCGTCAC+TGG 0.468160 1_2:+60312159 Msa0081650:CDS
CATTCACGAAGCTGTTTAGC+CGG 0.473064 1_2:+60310812 Msa0081650:CDS
AGCTTCACTGTCTGGGATGT+CGG 0.473789 1_2:+60311070 Msa0081650:CDS
AAGCTTGAGCTTATAAAGAA+TGG 0.497488 1_2:-60310896 None:intergenic
GTAAGATACATACCGATAGT+AGG 0.498973 1_2:-60310940 None:intergenic
CTCAAACAACATTGCAAACA+AGG 0.503713 1_2:+60312335 Msa0081650:CDS
AAGCTAGAGATGAGCTGCAC+AGG 0.506543 1_2:+60311824 Msa0081650:CDS
TCTCTTTCTTGGCAAATAGC+CGG 0.506749 1_2:-60310831 None:intergenic
TTGTGGTTGATAGCAATGAC+AGG 0.519491 1_2:+60311788 Msa0081650:CDS
GAACATCAGCTTCACTGTCT+GGG 0.522077 1_2:+60311063 Msa0081650:CDS
CGGTTACACCTGATTCCCAA+TGG 0.553465 1_2:+60310227 None:intergenic
ATGGTAGGTCTCGATGCAGC+TGG 0.562008 1_2:+60310865 Msa0081650:CDS
GGTTACACCTGATTCCCAAT+GGG 0.563432 1_2:+60310228 Msa0081650:five_prime_UTR
GACTTTATGAAGGACTTGAC+TGG 0.563819 1_2:+60312310 Msa0081650:CDS
AGTAATGTCTCCACAGAGGA+CGG 0.585615 1_2:-60311741 None:intergenic
TCTGGAGAAGGACTTTATGA+AGG 0.587372 1_2:+60312300 Msa0081650:CDS
CCCTGTAGATCCGTCCTCTG+TGG 0.597050 1_2:+60311731 Msa0081650:intron
GTTACAACCATTCCTACTAT+CGG 0.597928 1_2:+60310928 Msa0081650:CDS
ATAAAGTCCTTCTCCAGATG+TGG 0.605103 1_2:-60312295 None:intergenic
ATACATACCGATAGTAGGAA+TGG 0.605406 1_2:-60310935 None:intergenic
CTTGAGCTTATAAAGAATGG+TGG 0.605632 1_2:-60310893 None:intergenic
GCTGAGATAACTGATAAGCT+TGG 0.619937 1_2:+60312131 Msa0081650:CDS
TTCACTGTCTGGGATGTCGG+AGG 0.622588 1_2:+60311073 Msa0081650:CDS
GAGATGCGTATACTTATGGT+AGG 0.623901 1_2:+60310850 Msa0081650:CDS
ACATGTGCCACATCTGGAGA+AGG 0.627213 1_2:+60312288 Msa0081650:CDS
TAGTTTACCAGTGACGCTGA+CGG 0.637651 1_2:-60312166 None:intergenic
GGATGTCGGAGGTCAGGACA+AGG 0.643668 1_2:+60311084 Msa0081650:CDS
CATTACTTCCAAAATACACA+AGG 0.651419 1_2:+60311757 Msa0081650:CDS
TGTGGTTGATAGCAATGACA+GGG 0.656079 1_2:+60311789 Msa0081650:CDS
AGGGTTCAATGTGGAAACAG+TGG 0.658334 1_2:+60311033 Msa0081650:intron
CATCTCTAGCTTCAACAACA+CGG 0.660245 1_2:-60311813 None:intergenic
CAATGGGAATACAAAGACAC+CGG 0.666066 1_2:+60310244 Msa0081650:five_prime_UTR
GTTGTTCTATAAATACGCGT+AGG 0.682859 1_2:+60310302 Msa0081650:five_prime_UTR
TGTATATGTAGGGTTCAATG+TGG 0.687704 1_2:+60311024 Msa0081650:intron
GCTGCACAGGATGTTGAATG+AGG 0.712176 1_2:+60311837 Msa0081650:CDS
TGGAAGTAATGTCTCCACAG+AGG 0.750469 1_2:-60311745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGATTTTGATTTCAATTT+TGG + chr1_2:60310602-60310621 Msa0081650:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - chr1_2:60311252-60311271 None:intergenic 20.0%
!!! ACATATATTTTTCACATTTG+TGG + chr1_2:60311368-60311387 Msa0081650:intron 20.0%
!!! CATATATTTTTCACATTTGT+GGG + chr1_2:60311369-60311388 Msa0081650:intron 20.0%
!! TATGATGTACTATAATCTTT+CGG + chr1_2:60311609-60311628 Msa0081650:intron 20.0%
!!! AATGAAAGGTTGATTATTTA+TGG + chr1_2:60311887-60311906 Msa0081650:intron 20.0%
!!! CATGATTTTGATTTCAATTT+TGG + chr1_2:60310602-60310621 Msa0081650:intron 20.0%
!!! ATTAGAACTGAAATTTTGAA+AGG - chr1_2:60311252-60311271 None:intergenic 20.0%
!!! ACATATATTTTTCACATTTG+TGG + chr1_2:60311368-60311387 Msa0081650:intron 20.0%
!!! CATATATTTTTCACATTTGT+GGG + chr1_2:60311369-60311388 Msa0081650:intron 20.0%
!! TATGATGTACTATAATCTTT+CGG + chr1_2:60311609-60311628 Msa0081650:intron 20.0%
!!! AATGAAAGGTTGATTATTTA+TGG + chr1_2:60311887-60311906 Msa0081650:intron 20.0%
! TAACAAAGAGAAAAAGAAGT+TGG - chr1_2:60310347-60310366 None:intergenic 25.0%
!! TTCTTTTTCTCTTTGTTACA+AGG + chr1_2:60310349-60310368 Msa0081650:five_prime_UTR 25.0%
! TATCATATGCATGTTATTAC+TGG + chr1_2:60310554-60310573 Msa0081650:intron 25.0%
! AATAACGTAATATATGCAGA+TGG - chr1_2:60310680-60310699 None:intergenic 25.0%
!!! GATTTGTTGCTATTGAAATT+TGG + chr1_2:60310724-60310743 Msa0081650:intron 25.0%
! GATTCAGAAAAGTTGAAAAT+GGG + chr1_2:60310784-60310803 Msa0081650:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + chr1_2:60310954-60310973 Msa0081650:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + chr1_2:60310996-60311015 Msa0081650:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + chr1_2:60311013-60311032 Msa0081650:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + chr1_2:60311014-60311033 Msa0081650:intron 25.0%
! ATTTCATTGATGCTATAACA+TGG + chr1_2:60311173-60311192 Msa0081650:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + chr1_2:60311319-60311338 Msa0081650:intron 25.0%
! AAAAAAAAATCACTGCACAT+TGG - chr1_2:60311406-60311425 None:intergenic 25.0%
! TTATAGTACATCATAACAAG+AGG - chr1_2:60311604-60311623 None:intergenic 25.0%
! ATGATGTACTATAATCTTTC+GGG + chr1_2:60311610-60311629 Msa0081650:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + chr1_2:60311639-60311658 Msa0081650:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + chr1_2:60311686-60311705 Msa0081650:intron 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + chr1_2:60311935-60311954 Msa0081650:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + chr1_2:60311945-60311964 Msa0081650:intron 25.0%
! TCACTCATTCAACATATATT+TGG - chr1_2:60311982-60312001 None:intergenic 25.0%
! AATGAGTGAAAATGAAATGT+TGG + chr1_2:60311993-60312012 Msa0081650:intron 25.0%
!! TGAAATGTTGGTTATTTATG+TGG + chr1_2:60312005-60312024 Msa0081650:intron 25.0%
!! GAAATGTTGGTTATTTATGT+GGG + chr1_2:60312006-60312025 Msa0081650:intron 25.0%
! TTTGGATGCTTATAATACTT+TGG + chr1_2:60312036-60312055 Msa0081650:intron 25.0%
! AACAAGGTTAATACTGAATA+AGG + chr1_2:60312351-60312370 Msa0081650:CDS 25.0%
! TAACAAAGAGAAAAAGAAGT+TGG - chr1_2:60310347-60310366 None:intergenic 25.0%
!! TTCTTTTTCTCTTTGTTACA+AGG + chr1_2:60310349-60310368 Msa0081650:five_prime_UTR 25.0%
! TATCATATGCATGTTATTAC+TGG + chr1_2:60310554-60310573 Msa0081650:intron 25.0%
! AATAACGTAATATATGCAGA+TGG - chr1_2:60310680-60310699 None:intergenic 25.0%
!!! GATTTGTTGCTATTGAAATT+TGG + chr1_2:60310724-60310743 Msa0081650:intron 25.0%
! GATTCAGAAAAGTTGAAAAT+GGG + chr1_2:60310784-60310803 Msa0081650:intron 25.0%
! GTATCTTACTATGTTTGTAT+TGG + chr1_2:60310954-60310973 Msa0081650:intron 25.0%
! ATTATGGCTCATTGTATTAA+TGG + chr1_2:60310996-60311015 Msa0081650:intron 25.0%
!! TAATGGATCATTGTATATGT+AGG + chr1_2:60311013-60311032 Msa0081650:intron 25.0%
! AATGGATCATTGTATATGTA+GGG + chr1_2:60311014-60311033 Msa0081650:intron 25.0%
! ATTTCATTGATGCTATAACA+TGG + chr1_2:60311173-60311192 Msa0081650:intron 25.0%
!! TATAGTTGTAATCTTTTCCA+TGG + chr1_2:60311319-60311338 Msa0081650:intron 25.0%
! AAAAAAAAATCACTGCACAT+TGG - chr1_2:60311406-60311425 None:intergenic 25.0%
! TTATAGTACATCATAACAAG+AGG - chr1_2:60311604-60311623 None:intergenic 25.0%
! ATGATGTACTATAATCTTTC+GGG + chr1_2:60311610-60311629 Msa0081650:intron 25.0%
!!! AAATCTTGTTTTACTGAACA+TGG + chr1_2:60311639-60311658 Msa0081650:intron 25.0%
!!! TAGATCTTTTTTACTCAACA+TGG + chr1_2:60311686-60311705 Msa0081650:intron 25.0%
! AATAAGTGAAAATGAAAGGT+TGG + chr1_2:60311935-60311954 Msa0081650:intron 25.0%
!! AATGAAAGGTTGGTTATTTA+TGG + chr1_2:60311945-60311964 Msa0081650:intron 25.0%
! TCACTCATTCAACATATATT+TGG - chr1_2:60311982-60312001 None:intergenic 25.0%
! AATGAGTGAAAATGAAATGT+TGG + chr1_2:60311993-60312012 Msa0081650:intron 25.0%
!! TGAAATGTTGGTTATTTATG+TGG + chr1_2:60312005-60312024 Msa0081650:intron 25.0%
!! GAAATGTTGGTTATTTATGT+GGG + chr1_2:60312006-60312025 Msa0081650:intron 25.0%
! TTTGGATGCTTATAATACTT+TGG + chr1_2:60312036-60312055 Msa0081650:intron 25.0%
AATTGAGTAACGTGTTTATC+CGG - chr1_2:60310266-60310285 None:intergenic 30.0%
GATAAACACGTTACTCAATT+TGG + chr1_2:60310266-60310285 Msa0081650:five_prime_UTR 30.0%
AATCATTTCTCTCTTCTTCA+AGG + chr1_2:60310394-60310413 Msa0081650:five_prime_UTR 30.0%
TGATGATAGTATTGTTTGTG+TGG + chr1_2:60310762-60310781 Msa0081650:intron 30.0%
GGATTCAGAAAAGTTGAAAA+TGG + chr1_2:60310783-60310802 Msa0081650:intron 30.0%
AAGCTTGAGCTTATAAAGAA+TGG - chr1_2:60310899-60310918 None:intergenic 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + chr1_2:60310898-60310917 Msa0081650:CDS 30.0%
CATAATCATGATCACAGAAA+TGG - chr1_2:60310982-60311001 None:intergenic 30.0%
CATTTCTGTGATCATGATTA+TGG + chr1_2:60310980-60310999 Msa0081650:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + chr1_2:60311111-60311130 Msa0081650:intron 30.0%
TGATGCTATAACATGGTAAT+TGG + chr1_2:60311180-60311199 Msa0081650:intron 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - chr1_2:60311478-60311497 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + chr1_2:60311757-60311776 Msa0081650:CDS 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - chr1_2:60311768-60311787 None:intergenic 30.0%
GCTGAATAAGTGAAAATGAA+AGG + chr1_2:60311931-60311950 Msa0081650:intron 30.0%
AATTGAGTAACGTGTTTATC+CGG - chr1_2:60310266-60310285 None:intergenic 30.0%
GATAAACACGTTACTCAATT+TGG + chr1_2:60310266-60310285 Msa0081650:five_prime_UTR 30.0%
AATCATTTCTCTCTTCTTCA+AGG + chr1_2:60310394-60310413 Msa0081650:five_prime_UTR 30.0%
TGATGATAGTATTGTTTGTG+TGG + chr1_2:60310762-60310781 Msa0081650:intron 30.0%
GGATTCAGAAAAGTTGAAAA+TGG + chr1_2:60310783-60310802 Msa0081650:intron 30.0%
AAGCTTGAGCTTATAAAGAA+TGG - chr1_2:60310899-60310918 None:intergenic 30.0%
ATTCTTTATAAGCTCAAGCT+TGG + chr1_2:60310898-60310917 Msa0081650:CDS 30.0%
CATAATCATGATCACAGAAA+TGG - chr1_2:60310982-60311001 None:intergenic 30.0%
CATTTCTGTGATCATGATTA+TGG + chr1_2:60310980-60310999 Msa0081650:intron 30.0%
! TTTTCTCATTGCATCTTCTA+CGG + chr1_2:60311111-60311130 Msa0081650:intron 30.0%
TGATGCTATAACATGGTAAT+TGG + chr1_2:60311180-60311199 Msa0081650:intron 30.0%
!! TAAGAGTGTTGAATTCAAGA+AGG - chr1_2:60311478-60311497 None:intergenic 30.0%
CATTACTTCCAAAATACACA+AGG + chr1_2:60311757-60311776 Msa0081650:CDS 30.0%
! AAATGAGTCCTTGTGTATTT+TGG - chr1_2:60311768-60311787 None:intergenic 30.0%
GCTGAATAAGTGAAAATGAA+AGG + chr1_2:60311931-60311950 Msa0081650:intron 30.0%
GTTGTTCTATAAATACGCGT+AGG + chr1_2:60310302-60310321 Msa0081650:five_prime_UTR 35.0%
ATGCAGTGAAAAATCAGAGA+TGG - chr1_2:60310499-60310518 None:intergenic 35.0%
ATTCAATCATGCAATTCCAC+CGG + chr1_2:60310627-60310646 Msa0081650:intron 35.0%
AAGTATACGCATCTCTTTCT+TGG - chr1_2:60310845-60310864 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + chr1_2:60310846-60310865 Msa0081650:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - chr1_2:60310896-60310915 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + chr1_2:60310928-60310947 Msa0081650:CDS 35.0%
ATACATACCGATAGTAGGAA+TGG - chr1_2:60310938-60310957 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - chr1_2:60310943-60310962 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + chr1_2:60311024-60311043 Msa0081650:intron 35.0%
TCACAAACATACTTGCTCAA+GGG - chr1_2:60311215-60311234 None:intergenic 35.0%
TTCACAAACATACTTGCTCA+AGG - chr1_2:60311216-60311235 None:intergenic 35.0%
CACATCTACATCTTAATCCA+TGG - chr1_2:60311339-60311358 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + chr1_2:60311524-60311543 Msa0081650:intron 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - chr1_2:60311532-60311551 None:intergenic 35.0%
GGTCAAATGGAAGATAACTT+GGG - chr1_2:60311583-60311602 None:intergenic 35.0%
AGGTCAAATGGAAGATAACT+TGG - chr1_2:60311584-60311603 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - chr1_2:60311596-60311615 None:intergenic 35.0%
!! TACACAAGGACTCATTTTTG+TGG + chr1_2:60311771-60311790 Msa0081650:CDS 35.0%
GCTGAATGAGTGAAAATGAA+AGG + chr1_2:60311873-60311892 Msa0081650:intron 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + chr1_2:60312018-60312037 Msa0081650:intron 35.0%
GATGCTTATAATACTTTGGC+AGG + chr1_2:60312040-60312059 Msa0081650:intron 35.0%
ATGAGGATGAGAATGAGAAA+CGG - chr1_2:60312239-60312258 None:intergenic 35.0%
CTCAAACAACATTGCAAACA+AGG + chr1_2:60312335-60312354 Msa0081650:CDS 35.0%
GTTGTTCTATAAATACGCGT+AGG + chr1_2:60310302-60310321 Msa0081650:five_prime_UTR 35.0%
ATGCAGTGAAAAATCAGAGA+TGG - chr1_2:60310499-60310518 None:intergenic 35.0%
ATTCAATCATGCAATTCCAC+CGG + chr1_2:60310627-60310646 Msa0081650:intron 35.0%
AAGTATACGCATCTCTTTCT+TGG - chr1_2:60310845-60310864 None:intergenic 35.0%
GAAAGAGATGCGTATACTTA+TGG + chr1_2:60310846-60310865 Msa0081650:CDS 35.0%
CTTGAGCTTATAAAGAATGG+TGG - chr1_2:60310896-60310915 None:intergenic 35.0%
GTTACAACCATTCCTACTAT+CGG + chr1_2:60310928-60310947 Msa0081650:CDS 35.0%
ATACATACCGATAGTAGGAA+TGG - chr1_2:60310938-60310957 None:intergenic 35.0%
GTAAGATACATACCGATAGT+AGG - chr1_2:60310943-60310962 None:intergenic 35.0%
TGTATATGTAGGGTTCAATG+TGG + chr1_2:60311024-60311043 Msa0081650:intron 35.0%
TCACAAACATACTTGCTCAA+GGG - chr1_2:60311215-60311234 None:intergenic 35.0%
TTCACAAACATACTTGCTCA+AGG - chr1_2:60311216-60311235 None:intergenic 35.0%
CACATCTACATCTTAATCCA+TGG - chr1_2:60311339-60311358 None:intergenic 35.0%
AATCACCTACTCTAACTTTC+TGG + chr1_2:60311524-60311543 Msa0081650:intron 35.0%
TATCTCCAGAAAGTTAGAGT+AGG - chr1_2:60311532-60311551 None:intergenic 35.0%
GGTCAAATGGAAGATAACTT+GGG - chr1_2:60311583-60311602 None:intergenic 35.0%
AGGTCAAATGGAAGATAACT+TGG - chr1_2:60311584-60311603 None:intergenic 35.0%
CATCATAACAAGAGGTCAAA+TGG - chr1_2:60311596-60311615 None:intergenic 35.0%
!! TACACAAGGACTCATTTTTG+TGG + chr1_2:60311771-60311790 Msa0081650:CDS 35.0%
GCTGAATGAGTGAAAATGAA+AGG + chr1_2:60311873-60311892 Msa0081650:intron 35.0%
! ATTTATGTGGGTCGTCATTT+TGG + chr1_2:60312018-60312037 Msa0081650:intron 35.0%
GATGCTTATAATACTTTGGC+AGG + chr1_2:60312040-60312059 Msa0081650:intron 35.0%
ATGAGGATGAGAATGAGAAA+CGG - chr1_2:60312239-60312258 None:intergenic 35.0%
CTCAAACAACATTGCAAACA+AGG + chr1_2:60312335-60312354 Msa0081650:CDS 35.0%
TTGTATTCCCATTGGGAATC+AGG - chr1_2:60310238-60310257 None:intergenic 40.0%
GGTGTCTTTGTATTCCCATT+GGG - chr1_2:60310245-60310264 None:intergenic 40.0%
CAATGGGAATACAAAGACAC+CGG + chr1_2:60310244-60310263 Msa0081650:five_prime_UTR 40.0%
GATCTGGAAGAAAAGAGAAG+AGG - chr1_2:60310423-60310442 None:intergenic 40.0%
CCAGAAGAGATATACAGATC+TGG - chr1_2:60310439-60310458 None:intergenic 40.0%
CCAGATCTGTATATCTCTTC+TGG + chr1_2:60310436-60310455 Msa0081650:intron 40.0%
CGTAACATGATCTACGAATC+CGG - chr1_2:60310649-60310668 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - chr1_2:60310834-60310853 None:intergenic 40.0%
GAGATGCGTATACTTATGGT+AGG + chr1_2:60310850-60310869 Msa0081650:CDS 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - chr1_2:60311520-60311539 None:intergenic 40.0%
GAAGATAACTTGGGTCAAAG+GGG - chr1_2:60311574-60311593 None:intergenic 40.0%
GGAAGATAACTTGGGTCAAA+GGG - chr1_2:60311575-60311594 None:intergenic 40.0%
TGGAAGATAACTTGGGTCAA+AGG - chr1_2:60311576-60311595 None:intergenic 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + chr1_2:60311788-60311807 Msa0081650:CDS 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + chr1_2:60311789-60311808 Msa0081650:CDS 40.0%
! CATCTCTAGCTTCAACAACA+CGG - chr1_2:60311816-60311835 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - chr1_2:60312116-60312135 None:intergenic 40.0%
GCTGAGATAACTGATAAGCT+TGG + chr1_2:60312131-60312150 Msa0081650:CDS 40.0%
GTTTCTCATTCTCATCCTCA+TGG + chr1_2:60312238-60312257 Msa0081650:intron 40.0%
ATAAAGTCCTTCTCCAGATG+TGG - chr1_2:60312298-60312317 None:intergenic 40.0%
TCTGGAGAAGGACTTTATGA+AGG + chr1_2:60312300-60312319 Msa0081650:CDS 40.0%
GACTTTATGAAGGACTTGAC+TGG + chr1_2:60312310-60312329 Msa0081650:CDS 40.0%
TTGTATTCCCATTGGGAATC+AGG - chr1_2:60310238-60310257 None:intergenic 40.0%
GGTGTCTTTGTATTCCCATT+GGG - chr1_2:60310245-60310264 None:intergenic 40.0%
CAATGGGAATACAAAGACAC+CGG + chr1_2:60310244-60310263 Msa0081650:five_prime_UTR 40.0%
GATCTGGAAGAAAAGAGAAG+AGG - chr1_2:60310423-60310442 None:intergenic 40.0%
CCAGAAGAGATATACAGATC+TGG - chr1_2:60310439-60310458 None:intergenic 40.0%
CCAGATCTGTATATCTCTTC+TGG + chr1_2:60310436-60310455 Msa0081650:intron 40.0%
CGTAACATGATCTACGAATC+CGG - chr1_2:60310649-60310668 None:intergenic 40.0%
TCTCTTTCTTGGCAAATAGC+CGG - chr1_2:60310834-60310853 None:intergenic 40.0%
GAGATGCGTATACTTATGGT+AGG + chr1_2:60310850-60310869 Msa0081650:CDS 40.0%
GTTAGAGTAGGTGATTGAGT+AGG - chr1_2:60311520-60311539 None:intergenic 40.0%
GAAGATAACTTGGGTCAAAG+GGG - chr1_2:60311574-60311593 None:intergenic 40.0%
GGAAGATAACTTGGGTCAAA+GGG - chr1_2:60311575-60311594 None:intergenic 40.0%
TGGAAGATAACTTGGGTCAA+AGG - chr1_2:60311576-60311595 None:intergenic 40.0%
!! TTGTGGTTGATAGCAATGAC+AGG + chr1_2:60311788-60311807 Msa0081650:CDS 40.0%
!! TGTGGTTGATAGCAATGACA+GGG + chr1_2:60311789-60311808 Msa0081650:CDS 40.0%
! CATCTCTAGCTTCAACAACA+CGG - chr1_2:60311816-60311835 None:intergenic 40.0%
TCAGCAGCATTCATAGCATT+TGG - chr1_2:60312116-60312135 None:intergenic 40.0%
GCTGAGATAACTGATAAGCT+TGG + chr1_2:60312131-60312150 Msa0081650:CDS 40.0%
GTTTCTCATTCTCATCCTCA+TGG + chr1_2:60312238-60312257 Msa0081650:intron 40.0%
ATAAAGTCCTTCTCCAGATG+TGG - chr1_2:60312298-60312317 None:intergenic 40.0%
TCTGGAGAAGGACTTTATGA+AGG + chr1_2:60312300-60312319 Msa0081650:CDS 40.0%
GACTTTATGAAGGACTTGAC+TGG + chr1_2:60312310-60312329 Msa0081650:CDS 40.0%
GGTTACACCTGATTCCCAAT+GGG + chr1_2:60310228-60310247 Msa0081650:five_prime_UTR 45.0%
CGGTGTCTTTGTATTCCCAT+TGG - chr1_2:60310246-60310265 None:intergenic 45.0%
TTGGAGTTTCTCTCAACGTC+AGG - chr1_2:60310328-60310347 None:intergenic 45.0%
TGATCTCACGATATGCGATG+TGG - chr1_2:60310582-60310601 None:intergenic 45.0%
AACATGATCTACGAATCCGG+TGG - chr1_2:60310646-60310665 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + chr1_2:60310812-60310831 Msa0081650:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + chr1_2:60311033-60311052 Msa0081650:intron 45.0%
AGAACATCAGCTTCACTGTC+TGG + chr1_2:60311062-60311081 Msa0081650:CDS 45.0%
GAACATCAGCTTCACTGTCT+GGG + chr1_2:60311063-60311082 Msa0081650:CDS 45.0%
AGTAATGTCTCCACAGAGGA+CGG - chr1_2:60311744-60311763 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - chr1_2:60311748-60311767 None:intergenic 45.0%
TAGTTTACCAGTGACGCTGA+CGG - chr1_2:60312169-60312188 None:intergenic 45.0%
GAAACGGAAGCAGGAAGATA+AGG - chr1_2:60312223-60312242 None:intergenic 45.0%
TGAGAATGAGAAACGGAAGC+AGG - chr1_2:60312232-60312251 None:intergenic 45.0%
CCTGCATGTAAAGATCCATG+AGG - chr1_2:60312256-60312275 None:intergenic 45.0%
CCTCATGGATCTTTACATGC+AGG + chr1_2:60312253-60312272 Msa0081650:intron 45.0%
GGTTACACCTGATTCCCAAT+GGG + chr1_2:60310228-60310247 Msa0081650:five_prime_UTR 45.0%
CGGTGTCTTTGTATTCCCAT+TGG - chr1_2:60310246-60310265 None:intergenic 45.0%
TTGGAGTTTCTCTCAACGTC+AGG - chr1_2:60310328-60310347 None:intergenic 45.0%
TGATCTCACGATATGCGATG+TGG - chr1_2:60310582-60310601 None:intergenic 45.0%
AACATGATCTACGAATCCGG+TGG - chr1_2:60310646-60310665 None:intergenic 45.0%
CATTCACGAAGCTGTTTAGC+CGG + chr1_2:60310812-60310831 Msa0081650:CDS 45.0%
AGGGTTCAATGTGGAAACAG+TGG + chr1_2:60311033-60311052 Msa0081650:intron 45.0%
AGAACATCAGCTTCACTGTC+TGG + chr1_2:60311062-60311081 Msa0081650:CDS 45.0%
GAACATCAGCTTCACTGTCT+GGG + chr1_2:60311063-60311082 Msa0081650:CDS 45.0%
AGTAATGTCTCCACAGAGGA+CGG - chr1_2:60311744-60311763 None:intergenic 45.0%
TGGAAGTAATGTCTCCACAG+AGG - chr1_2:60311748-60311767 None:intergenic 45.0%
TAGTTTACCAGTGACGCTGA+CGG - chr1_2:60312169-60312188 None:intergenic 45.0%
GAAACGGAAGCAGGAAGATA+AGG - chr1_2:60312223-60312242 None:intergenic 45.0%
TGAGAATGAGAAACGGAAGC+AGG - chr1_2:60312232-60312251 None:intergenic 45.0%
CCTGCATGTAAAGATCCATG+AGG - chr1_2:60312256-60312275 None:intergenic 45.0%
CCTCATGGATCTTTACATGC+AGG + chr1_2:60312253-60312272 Msa0081650:intron 45.0%
! AGCTTCACTGTCTGGGATGT+CGG + chr1_2:60311070-60311089 Msa0081650:CDS 50.0%
AAGCTAGAGATGAGCTGCAC+AGG + chr1_2:60311824-60311843 Msa0081650:CDS 50.0%
GCTGCACAGGATGTTGAATG+AGG + chr1_2:60311837-60311856 Msa0081650:CDS 50.0%
CGGAAGCAGGAAGATAAGGA+AGG - chr1_2:60312219-60312238 None:intergenic 50.0%
ACATGTGCCACATCTGGAGA+AGG + chr1_2:60312288-60312307 Msa0081650:CDS 50.0%
! AGCTTCACTGTCTGGGATGT+CGG + chr1_2:60311070-60311089 Msa0081650:CDS 50.0%
AAGCTAGAGATGAGCTGCAC+AGG + chr1_2:60311824-60311843 Msa0081650:CDS 50.0%
GCTGCACAGGATGTTGAATG+AGG + chr1_2:60311837-60311856 Msa0081650:CDS 50.0%
CGGAAGCAGGAAGATAAGGA+AGG - chr1_2:60312219-60312238 None:intergenic 50.0%
ACATGTGCCACATCTGGAGA+AGG + chr1_2:60312288-60312307 Msa0081650:CDS 50.0%
ATGGTAGGTCTCGATGCAGC+TGG + chr1_2:60310865-60310884 Msa0081650:CDS 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + chr1_2:60311073-60311092 Msa0081650:CDS 55.0%
CCACAGAGGACGGATCTACA+GGG - chr1_2:60311734-60311753 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - chr1_2:60311735-60311754 None:intergenic 55.0%
CAGATGTGGCACATGTGCTC+TGG - chr1_2:60312284-60312303 None:intergenic 55.0%
CAGAGCACATGTGCCACATC+TGG + chr1_2:60312282-60312301 Msa0081650:CDS 55.0%
ATGGTAGGTCTCGATGCAGC+TGG + chr1_2:60310865-60310884 Msa0081650:CDS 55.0%
! TTCACTGTCTGGGATGTCGG+AGG + chr1_2:60311073-60311092 Msa0081650:CDS 55.0%
CCACAGAGGACGGATCTACA+GGG - chr1_2:60311734-60311753 None:intergenic 55.0%
TCCACAGAGGACGGATCTAC+AGG - chr1_2:60311735-60311754 None:intergenic 55.0%
CAGATGTGGCACATGTGCTC+TGG - chr1_2:60312284-60312303 None:intergenic 55.0%
CAGAGCACATGTGCCACATC+TGG + chr1_2:60312282-60312301 Msa0081650:CDS 55.0%
! TGTCTGGGATGTCGGAGGTC+AGG + chr1_2:60311078-60311097 Msa0081650:CDS 60.0%
GGATGTCGGAGGTCAGGACA+AGG + chr1_2:60311084-60311103 Msa0081650:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + chr1_2:60311731-60311750 Msa0081650:intron 60.0%
ACTCTCTCCGTCAGCGTCAC+TGG + chr1_2:60312159-60312178 Msa0081650:CDS 60.0%
! TGTCTGGGATGTCGGAGGTC+AGG + chr1_2:60311078-60311097 Msa0081650:CDS 60.0%
GGATGTCGGAGGTCAGGACA+AGG + chr1_2:60311084-60311103 Msa0081650:CDS 60.0%
CCCTGTAGATCCGTCCTCTG+TGG + chr1_2:60311731-60311750 Msa0081650:intron 60.0%
ACTCTCTCCGTCAGCGTCAC+TGG + chr1_2:60312159-60312178 Msa0081650:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 60310228 60312371 60310228 ID=Msa0081650;Name=Msa0081650
chr1_2 mRNA 60310228 60312371 60310228 ID=Msa0081650-mRNA-1;Parent=Msa0081650;Name=Msa0081650-mRNA-1;_AED=0.20;_eAED=0.20;_QI=199|1|0.83|1|0.8|0.66|6|0|184
chr1_2 exon 60310228 60310415 60310228 ID=Msa0081650-mRNA-1:exon:19657;Parent=Msa0081650-mRNA-1
chr1_2 exon 60310791 60310949 60310791 ID=Msa0081650-mRNA-1:exon:19658;Parent=Msa0081650-mRNA-1
chr1_2 exon 60311035 60311105 60311035 ID=Msa0081650-mRNA-1:exon:19659;Parent=Msa0081650-mRNA-1
chr1_2 exon 60311739 60311858 60311739 ID=Msa0081650-mRNA-1:exon:19660;Parent=Msa0081650-mRNA-1
chr1_2 exon 60312062 60312180 60312062 ID=Msa0081650-mRNA-1:exon:19661;Parent=Msa0081650-mRNA-1
chr1_2 exon 60312275 60312371 60312275 ID=Msa0081650-mRNA-1:exon:19662;Parent=Msa0081650-mRNA-1
chr1_2 five_prime_UTR 60310228 60310415 60310228 ID=Msa0081650-mRNA-1:five_prime_utr;Parent=Msa0081650-mRNA-1
chr1_2 five_prime_UTR 60310791 60310801 60310791 ID=Msa0081650-mRNA-1:five_prime_utr;Parent=Msa0081650-mRNA-1
chr1_2 CDS 60310802 60310949 60310802 ID=Msa0081650-mRNA-1:cds;Parent=Msa0081650-mRNA-1
chr1_2 CDS 60311035 60311105 60311035 ID=Msa0081650-mRNA-1:cds;Parent=Msa0081650-mRNA-1
chr1_2 CDS 60311739 60311858 60311739 ID=Msa0081650-mRNA-1:cds;Parent=Msa0081650-mRNA-1
chr1_2 CDS 60312062 60312180 60312062 ID=Msa0081650-mRNA-1:cds;Parent=Msa0081650-mRNA-1
chr1_2 CDS 60312275 60312371 60312275 ID=Msa0081650-mRNA-1:cds;Parent=Msa0081650-mRNA-1
Gene Sequence

>Msa0081650

ATGGGATTGTCATTCACGAAGCTGTTTAGCCGGCTATTTGCCAAGAAAGAGATGCGTATACTTATGGTAGGTCTCGATGCAGCTGGTAAGACCACCATTCTTTATAAGCTCAAGCTTGGAGAGATCGTTACAACCATTCCTACTATCGGGTTCAATGTGGAAACAGTGGAATATAAGAACATCAGCTTCACTGTCTGGGATGTCGGAGGTCAGGACAAGATCCGTCCTCTGTGGAGACATTACTTCCAAAATACACAAGGACTCATTTTTGTGGTTGATAGCAATGACAGGGACCGTGTTGTTGAAGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAATTGAGAGATGCAGTGCTTCTAGTTTTTGCTAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCACTCTCTCCGTCAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGAGAAGGACTTTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATACTGAATAA

Protein sequence

>Msa0081650

MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVNTE*