AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0817650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817650 MtrunA17_Chr5g0436641 100.000 310 0 0 1 310 1 310 0.0 629
Msa0817650 MtrunA17_Chr3g0113191 94.822 309 16 0 1 309 1 309 0.0 598
Msa0817650 MtrunA17_Chr3g0113201 32.841 271 165 6 19 285 25 282 4.91e-35 128
Msa0817650 MtrunA17_Chr5g0436671 31.365 271 169 6 19 285 21 278 2.19e-31 119
Msa0817650 MtrunA17_Chr3g0079641 26.014 296 181 6 19 285 13 299 1.99e-23 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0817650 AT5G05780.1 89.935 308 31 0 1 308 1 308 0.0 571
Msa0817650 AT3G11270.1 89.508 305 32 0 1 305 1 305 0.0 563
Msa0817650 AT5G05780.2 88.961 308 31 1 1 308 1 305 0.0 560
Msa0817650 AT3G11270.2 88.525 305 32 1 1 305 1 302 0.0 551
Msa0817650 AT2G39990.1 29.487 234 148 6 19 248 30 250 3.95e-25 102
Msa0817650 AT4G26430.1 25.081 307 191 7 19 295 13 310 7.64e-23 96.7
Msa0817650 AT5G56280.1 24.262 305 192 7 19 295 13 306 6.94e-22 94.4

Find 82 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACAGGATCTCATGGTTTA+AGG 0.226556 5_3:+53007054 None:intergenic
CGCGTCGTTGGAGTTCTTCT+TGG 0.238114 5_3:-53010000 Msa0817650:CDS
ATTATAACCAAAACGGGATT+TGG 0.243791 5_3:+53008898 None:intergenic
GTAGGAATTCCCAACTCTTT+AGG 0.247111 5_3:+53008865 None:intergenic
TACCTTGACCTTGTCATTGA+TGG 0.274529 5_3:-53007085 Msa0817650:CDS
TACAGCAGGAAGTTGAGATT+TGG 0.286847 5_3:-53005735 Msa0817650:exon
GACGCGTTTGCGAGTGTCTT+TGG 0.305618 5_3:+53010017 None:intergenic
CTCTGTTGCAAGGGTGCTAA+TGG 0.335329 5_3:+53007314 None:intergenic
GCTCATGAAGTTGAGGAAAT+AGG 0.335482 5_3:-53008582 Msa0817650:intron
TGAGATCCTGTATCATTTGC+AGG 0.345264 5_3:-53007044 Msa0817650:intron
TTAATGAAATACATGTAATA+TGG 0.350470 5_3:-53005604 Msa0817650:three_prime_UTR
TTTGGGAGGGTTGTGATACT+TGG 0.355039 5_3:-53005717 Msa0817650:three_prime_UTR
CTATGTTCCAAATCCCGTTT+TGG 0.360839 5_3:-53008905 Msa0817650:CDS
AATTTGTTGCAATAGTTGAT+AGG 0.369207 5_3:+53005439 None:intergenic
TGCGAATCGATGAATGAATA+TGG 0.372061 5_3:+53010196 None:intergenic
CAAATCAGTGACATTAAGAT+TGG 0.377033 5_3:+53006333 None:intergenic
ACAGCAGGAAGTTGAGATTT+GGG 0.387193 5_3:-53005734 Msa0817650:exon
ACATCAATTATAACCAAAAC+GGG 0.396892 5_3:+53008892 None:intergenic
ACTCACAGCCTTGAAGGGTT+TGG 0.398386 5_3:-53007134 Msa0817650:CDS
TCTTGCATCCAAACCCTTCA+AGG 0.405808 5_3:+53007126 None:intergenic
GGAGCCAACTGAAAACCTTC+TGG 0.414877 5_3:-53005652 Msa0817650:three_prime_UTR
CATGAGCAGCAATTTCTGAT+TGG 0.415675 5_3:+53008598 None:intergenic
ATGACAAGGATCCTAGCATT+TGG 0.417257 5_3:-53009769 Msa0817650:CDS
CTTCTTGGTTCCTCTTTCAA+AGG 0.424962 5_3:-53009985 Msa0817650:CDS
AACATCAATTATAACCAAAA+CGG 0.431934 5_3:+53008891 None:intergenic
TGATAGGTATTTCTGTTAAA+CGG 0.435631 5_3:+53005455 None:intergenic
TAATGTCACTGATTTGATCA+AGG 0.437836 5_3:-53006326 Msa0817650:CDS
TGACATTAAGATTGGGCAGC+AGG 0.443727 5_3:+53006341 None:intergenic
GATGTTGAACCTAAAGAGTT+GGG 0.449227 5_3:-53008874 Msa0817650:CDS
TACAGGATCTCATGGTTTAA+GGG 0.462303 5_3:+53007055 None:intergenic
TGCAAAACTCACAGCCTTGA+AGG 0.463569 5_3:-53007140 Msa0817650:CDS
TGTAGCTAAGGAGCATGTTG+TGG 0.468792 5_3:-53009587 Msa0817650:intron
TGTAATATTGCTTCTGCTCG+TGG 0.472472 5_3:-53005552 Msa0817650:three_prime_UTR
TCCTTGTCATCTTCTTCAAA+CGG 0.478344 5_3:+53009782 None:intergenic
TCTCAACTTCCTGCTGTACT+TGG 0.483401 5_3:+53005740 None:intergenic
TGATGTTGAACCTAAAGAGT+TGG 0.483855 5_3:-53008875 Msa0817650:CDS
GTAGCTAAGGAGCATGTTGT+GGG 0.499396 5_3:-53009586 Msa0817650:intron
TCTATGTTCAAGAGAATCAA+TGG 0.505078 5_3:-53009713 Msa0817650:intron
TGCTCAACAAAGAACATGAA+AGG 0.510479 5_3:-53005790 Msa0817650:CDS
GTTGTGGGGTGGTATAGTAC+TGG 0.515160 5_3:-53009571 Msa0817650:CDS
CTTCCTGCTGTACTTGGTAC+AGG 0.516124 5_3:+53005746 None:intergenic
AACCAACCTGCAAATGATAC+AGG 0.522061 5_3:+53007038 None:intergenic
TGCTGTTGAGGAGGTTAAAG+AGG 0.523785 5_3:-53008830 Msa0817650:intron
CGAGCAGAAGCAATATTACA+TGG 0.525516 5_3:+53005555 None:intergenic
GACACTCGCAAACGCGTCGT+TGG 0.526211 5_3:-53010012 Msa0817650:CDS
GAAAACTAATGATCAAATGC+TGG 0.532471 5_3:-53006200 Msa0817650:CDS
CCTTGTTGTTAATCAAGTTG+TGG 0.533219 5_3:+53006137 None:intergenic
GCTCAACAAAGAACATGAAA+GGG 0.533816 5_3:-53005789 Msa0817650:CDS
AAATCAGTGACATTAAGATT+GGG 0.537245 5_3:+53006334 None:intergenic
CAAAAGGCACCTCTGTTGCA+AGG 0.539561 5_3:+53007304 None:intergenic
CGGTTGTGAGCGAAGCCGCC+AGG 0.540318 5_3:+53005475 None:intergenic
TTGTGATACTTGGAGTTCGA+AGG 0.542435 5_3:-53005707 Msa0817650:three_prime_UTR
TGATCAAGAAACCAAATGCT+AGG 0.549445 5_3:+53009758 None:intergenic
CAGGAAGTTGAGATTTGGGA+GGG 0.550146 5_3:-53005730 Msa0817650:exon
ATCACGAAGAACAAAGAAAG+AGG 0.559871 5_3:-53010228 Msa0817650:five_prime_UTR
ACATTTGCTTAGAGATGTGA+AGG 0.560287 5_3:-53007343 Msa0817650:CDS
ATCGACGGTGCCTTTGAAAG+AGG 0.562674 5_3:+53009975 None:intergenic
GCAAAACTCACAGCCTTGAA+GGG 0.565234 5_3:-53007139 Msa0817650:CDS
AATTGCTGCTCATGAAGTTG+AGG 0.565331 5_3:-53008589 Msa0817650:CDS
ACTATGCTGAGTAAAACTAA+AGG 0.568083 5_3:+53010060 None:intergenic
GCAAATGATACAGGATCTCA+TGG 0.569112 5_3:+53007047 None:intergenic
TGCCACTCAGAAGAGTCAAA+AGG 0.570358 5_3:-53008634 Msa0817650:CDS
AAAAGCTTACTATGCTGTTG+AGG 0.571528 5_3:-53008842 Msa0817650:CDS
GTGCCTGTACCAAGTACAGC+AGG 0.578421 5_3:-53005749 Msa0817650:CDS
AGCTTACTATGCTGTTGAGG+AGG 0.588880 5_3:-53008839 Msa0817650:CDS
CATTAGCACCCTTGCAACAG+AGG 0.592118 5_3:-53007313 Msa0817650:intron
AAAACTTAAGAGTGACCAGA+AGG 0.597853 5_3:+53005637 None:intergenic
TAAAATGATCAATACATGAA+CGG 0.604109 5_3:-53005673 Msa0817650:three_prime_UTR
CCACAACTTGATTAACAACA+AGG 0.604169 5_3:-53006137 Msa0817650:intron
TTCCATCAATGACAAGGTCA+AGG 0.607781 5_3:+53007083 None:intergenic
TGTGATACTTGGAGTTCGAA+GGG 0.611802 5_3:-53005706 Msa0817650:three_prime_UTR
GATATCACCAACAGCTACGC+CGG 0.611908 5_3:-53009955 Msa0817650:intron
AAAAGGCACCTCTGTTGCAA+GGG 0.618690 5_3:+53007305 None:intergenic
GCAGGAAGTTGAGATTTGGG+AGG 0.642480 5_3:-53005731 Msa0817650:exon
GCCGTTTGAAGAAGATGACA+AGG 0.651393 5_3:-53009783 Msa0817650:CDS
AATTGTACCGGCGTAGCTGT+TGG 0.654663 5_3:+53009948 None:intergenic
GTAGCTGTTGGTGATATCGA+CGG 0.656872 5_3:+53009960 None:intergenic
CTAAGGAGCATGTTGTGGGG+TGG 0.656967 5_3:-53009582 Msa0817650:CDS
CACTTCTAATGAGAGACGAT+AGG 0.662773 5_3:+53006170 None:intergenic
GAAGCTTTCCATCAATGACA+AGG 0.673682 5_3:+53007077 None:intergenic
TAGCTAAGGAGCATGTTGTG+GGG 0.682914 5_3:-53009585 Msa0817650:CDS
AATACATGTAATATGGCACA+AGG 0.690752 5_3:-53005597 Msa0817650:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTCATTTATGATTTT+TGG - chr5_3:53008172-53008191 Msa0817650:intron 10.0%
!!! TAATTAAGTGTTATTAATAA+CGG + chr5_3:53008219-53008238 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+TGG - chr5_3:53008859-53008878 Msa0817650:CDS 10.0%
!!! AAAGAAGAGTATAAATTTAT+AGG + chr5_3:53008265-53008284 None:intergenic 15.0%
!!! TGATTTGGTTTTATATTTAT+GGG - chr5_3:53009582-53009601 Msa0817650:CDS 15.0%
!! TTAATGAAATACATGTAATA+TGG - chr5_3:53010042-53010061 Msa0817650:CDS 15.0%
!! ATTGAAATTGAAAATTGTAC+CGG + chr5_3:53005713-53005732 None:intergenic 20.0%
!! TTCAATATAATTACATGTGT+CGG - chr5_3:53005741-53005760 Msa0817650:exon 20.0%
!! AAATTTGATGTGATTAAAGA+TGG - chr5_3:53006007-53006026 Msa0817650:intron 20.0%
!!! TGATTTATTTTTTGTAGCTA+AGG - chr5_3:53006047-53006066 Msa0817650:intron 20.0%
!!! TTTTGTTTATTACTGCAATT+AGG - chr5_3:53006192-53006211 Msa0817650:CDS 20.0%
!! TCATAAACATAGCTATAAAA+AGG + chr5_3:53006240-53006259 None:intergenic 20.0%
!! AACATCAATTATAACCAAAA+CGG + chr5_3:53006758-53006777 None:intergenic 20.0%
!! ATATTTGCAAGAAAGATAAA+AGG + chr5_3:53006855-53006874 None:intergenic 20.0%
!!! ATTTGTCTAATTTGATTTCT+GGG + chr5_3:53007155-53007174 None:intergenic 20.0%
!!! TATTTGTCTAATTTGATTTC+TGG + chr5_3:53007156-53007175 None:intergenic 20.0%
!! AAAATAAAATAATGCTGAGT+CGG - chr5_3:53007721-53007740 Msa0817650:intron 20.0%
!! TATTAAGTGAAGAAAGAATA+TGG + chr5_3:53007831-53007850 None:intergenic 20.0%
!! ATCAATAGTTTCATAGATTA+TGG + chr5_3:53008635-53008654 None:intergenic 20.0%
!!! CACATAGTTTAATTTAAAAC+TGG - chr5_3:53008716-53008735 Msa0817650:intron 20.0%
!! AATTGTATTACTTGAAAACA+AGG + chr5_3:53009196-53009215 None:intergenic 20.0%
!!! CTGATTTGGTTTTATATTTA+TGG - chr5_3:53009581-53009600 Msa0817650:CDS 20.0%
!!! GTATTGATCATTTTAAACAA+CGG + chr5_3:53009968-53009987 None:intergenic 20.0%
!! TAAAATGATCAATACATGAA+CGG - chr5_3:53009973-53009992 Msa0817650:CDS 20.0%
!! AATCAGAAACAAAACAAAAA+AGG + chr5_3:53010150-53010169 None:intergenic 20.0%
! TAAAAACGCAACAAATTTCA+TGG - chr5_3:53005536-53005555 Msa0817650:three_prime_UTR 25.0%
! GCACTGTTAAAAACAAATAA+AGG + chr5_3:53005845-53005864 None:intergenic 25.0%
! TGGTATGAAAGATTATTGTT+TGG - chr5_3:53005953-53005972 Msa0817650:intron 25.0%
! TTAAAAAAACAACTATGCAG+TGG + chr5_3:53006170-53006189 None:intergenic 25.0%
!! TATAGCTTTTGCAAAAAATG+CGG - chr5_3:53006354-53006373 Msa0817650:CDS 25.0%
! ACAACCAATTATTAATCCTT+AGG + chr5_3:53006631-53006650 None:intergenic 25.0%
! ACATCAATTATAACCAAAAC+GGG + chr5_3:53006757-53006776 None:intergenic 25.0%
! TGAAACTTAATTGTAGATGT+AGG - chr5_3:53006958-53006977 Msa0817650:intron 25.0%
! TTGCATCATGAACAAAATAA+AGG + chr5_3:53007132-53007151 None:intergenic 25.0%
! AGAGAAACAAAATGAATTAG+TGG + chr5_3:53007374-53007393 None:intergenic 25.0%
!!! ATCCTCATTTTTAAATAGTG+AGG + chr5_3:53007909-53007928 None:intergenic 25.0%
! AATGAGGATAATGATTATGT+TGG - chr5_3:53007920-53007939 Msa0817650:intron 25.0%
! ATGAGGATAATGATTATGTT+GGG - chr5_3:53007921-53007940 Msa0817650:intron 25.0%
! TTACTTCTAATTTCTGTTTC+TGG - chr5_3:53008031-53008050 Msa0817650:intron 25.0%
! AAAATAGCAGATAGTGTAAT+GGG + chr5_3:53008158-53008177 None:intergenic 25.0%
! AAAAATAGCAGATAGTGTAA+TGG + chr5_3:53008159-53008178 None:intergenic 25.0%
!!! GATTATTCTTTTTTGACACA+AGG - chr5_3:53008447-53008466 Msa0817650:intron 25.0%
!! ATCAGATTTTTGCTTTCTTT+AGG - chr5_3:53008791-53008810 Msa0817650:intron 25.0%
!! TCAGATTTTTGCTTTCTTTA+GGG - chr5_3:53008792-53008811 Msa0817650:intron 25.0%
! TTCTCTATGTTATCTTGATT+TGG - chr5_3:53009215-53009234 Msa0817650:intron 25.0%
! TCTCTATGTTATCTTGATTT+GGG - chr5_3:53009216-53009235 Msa0817650:intron 25.0%
! AAATCAGTGACATTAAGATT+GGG + chr5_3:53009315-53009334 None:intergenic 25.0%
! AATCAATCAATAATCCATAG+AGG + chr5_3:53009407-53009426 None:intergenic 25.0%
!! AAGCTTTTCTTATGTAACAA+AGG + chr5_3:53009768-53009787 None:intergenic 25.0%
!! TGATAGGTATTTCTGTTAAA+CGG + chr5_3:53010194-53010213 None:intergenic 25.0%
!!! AATTTGTTGCAATAGTTGAT+AGG + chr5_3:53010210-53010229 None:intergenic 25.0%
!! TTGTTGTTGTGAATTTTCAG+TGG + chr5_3:53005501-53005520 None:intergenic 30.0%
ATTCACAACAACAACAACAA+TGG - chr5_3:53005507-53005526 Msa0817650:three_prime_UTR 30.0%
ACTATGCTGAGTAAAACTAA+AGG + chr5_3:53005589-53005608 None:intergenic 30.0%
TCTATGTTCAAGAGAATCAA+TGG - chr5_3:53005933-53005952 Msa0817650:intron 30.0%
ATAGCTATGTTTATGACTCT+AGG - chr5_3:53006244-53006263 Msa0817650:intron 30.0%
TGTGGCATAGTAATTTAAAG+AGG - chr5_3:53006323-53006342 Msa0817650:CDS 30.0%
TTGTTAAATAGCAGGTATAG+CGG - chr5_3:53006383-53006402 Msa0817650:intron 30.0%
AATAGCAGCTTGTCTAAATT+TGG + chr5_3:53006428-53006447 None:intergenic 30.0%
TAAAATTCCGCTACACAATA+GGG + chr5_3:53006465-53006484 None:intergenic 30.0%
GCAACCTAAGGATTAATAAT+TGG - chr5_3:53006624-53006643 Msa0817650:intron 30.0%
GAACATCAATAATCGATAAG+AGG + chr5_3:53006697-53006716 None:intergenic 30.0%
TTGATGTTCGTCTCAATTTA+TGG - chr5_3:53006708-53006727 Msa0817650:intron 30.0%
ATTATAACCAAAACGGGATT+TGG + chr5_3:53006751-53006770 None:intergenic 30.0%
AATCATTCTGCTTTATGTGA+TGG - chr5_3:53006910-53006929 Msa0817650:intron 30.0%
TAGATGTAGGAACTTAAGAA+TGG - chr5_3:53006971-53006990 Msa0817650:intron 30.0%
AAGAGAAACTGTTATGAAAC+TGG - chr5_3:53007185-53007204 Msa0817650:intron 30.0%
ATTTGCTCTGTAGATAGTTT+GGG + chr5_3:53007256-53007275 None:intergenic 30.0%
AAAAATATGGAGTGTATGAG+AGG + chr5_3:53007425-53007444 None:intergenic 30.0%
! TCTCATACACTCCATATTTT+TGG - chr5_3:53007424-53007443 Msa0817650:intron 30.0%
TAATGACCACACCAAAAATA+TGG + chr5_3:53007438-53007457 None:intergenic 30.0%
TATTGAACAACACTGTCATA+TGG + chr5_3:53007522-53007541 None:intergenic 30.0%
TGAAGAAAGAATATGGAGAT+TGG + chr5_3:53007824-53007843 None:intergenic 30.0%
TGCCTCACTATTTAAAAATG+AGG - chr5_3:53007904-53007923 Msa0817650:intron 30.0%
TGAGGATAATGATTATGTTG+GGG - chr5_3:53007922-53007941 Msa0817650:intron 30.0%
GTATATCAAAAGTGAGCAAA+AGG + chr5_3:53008361-53008380 None:intergenic 30.0%
AAAAATACACCATTAGAGAC+AGG + chr5_3:53008413-53008432 None:intergenic 30.0%
!!! CTTTTTTGACACAAGGATAA+AGG - chr5_3:53008454-53008473 Msa0817650:intron 30.0%
CATATATCAACCTAAATTCC+TGG + chr5_3:53008680-53008699 None:intergenic 30.0%
AGCAAAAATCTGATCATTTC+AGG + chr5_3:53008785-53008804 None:intergenic 30.0%
AAAAAAACTTAGGGTGTGTT+TGG + chr5_3:53008941-53008960 None:intergenic 30.0%
!!! AACACACCCTAAGTTTTTTT+TGG - chr5_3:53008941-53008960 Msa0817650:intron 30.0%
!!! ACACACCCTAAGTTTTTTTT+GGG - chr5_3:53008942-53008961 Msa0817650:intron 30.0%
ACACACCCAAAAAAAACTTA+GGG + chr5_3:53008950-53008969 None:intergenic 30.0%
AACACACCCAAAAAAAACTT+AGG + chr5_3:53008951-53008970 None:intergenic 30.0%
!!! GTTTTTTTTGGGTGTGTTTA+TGG - chr5_3:53008953-53008972 Msa0817650:intron 30.0%
! GTTAGTCTGTTTGTTAGTTT+CGG - chr5_3:53009085-53009104 Msa0817650:intron 30.0%
GACATGGTAAAACACAATAT+TGG + chr5_3:53009257-53009276 None:intergenic 30.0%
TAGCAAAATAAAACAGGACA+TGG + chr5_3:53009273-53009292 None:intergenic 30.0%
!!! ATGTCCTGTTTTATTTTGCT+AGG - chr5_3:53009272-53009291 Msa0817650:intron 30.0%
CAAATCAGTGACATTAAGAT+TGG + chr5_3:53009316-53009335 None:intergenic 30.0%
!! TAATGTCACTGATTTGATCA+AGG - chr5_3:53009320-53009339 Msa0817650:intron 30.0%
GAAAACTAATGATCAAATGC+TGG - chr5_3:53009446-53009465 Msa0817650:intron 30.0%
AAATCAATTTAGTCCTCCTT+AGG - chr5_3:53009648-53009667 Msa0817650:intron 30.0%
AATCAATTTAGTCCTCCTTA+GGG - chr5_3:53009649-53009668 Msa0817650:intron 30.0%
AAAGCTCAAGAAACAAAACA+TGG + chr5_3:53009680-53009699 None:intergenic 30.0%
! TGAGCTTTAGTTAAGTTGTT+TGG - chr5_3:53009692-53009711 Msa0817650:intron 30.0%
! GAGCTTTAGTTAAGTTGTTT+GGG - chr5_3:53009693-53009712 Msa0817650:intron 30.0%
! TGGGTTGAATTGTTTGAAAT+TGG - chr5_3:53009712-53009731 Msa0817650:intron 30.0%
TGAATCAAAGTTTAGTATCC+AGG - chr5_3:53009742-53009761 Msa0817650:CDS 30.0%
AATACATGTAATATGGCACA+AGG - chr5_3:53010049-53010068 Msa0817650:CDS 30.0%
!!! TTGTTTTGTTTCTGATTACC+TGG - chr5_3:53010153-53010172 Msa0817650:five_prime_UTR 30.0%
ATCACGAAGAACAAAGAAAG+AGG - chr5_3:53005418-53005437 Msa0817650:three_prime_UTR 35.0%
TGCGAATCGATGAATGAATA+TGG + chr5_3:53005453-53005472 None:intergenic 35.0%
TCGCACACAGAACAAAAATT+AGG - chr5_3:53005468-53005487 Msa0817650:three_prime_UTR 35.0%
CGCACACAGAACAAAAATTA+GGG - chr5_3:53005469-53005488 Msa0817650:three_prime_UTR 35.0%
TCCTTGTCATCTTCTTCAAA+CGG + chr5_3:53005867-53005886 None:intergenic 35.0%
TGATCAAGAAACCAAATGCT+AGG + chr5_3:53005891-53005910 None:intergenic 35.0%
! AGATCATTTTCTCGCAGTTT+CGG + chr5_3:53006102-53006121 None:intergenic 35.0%
! ACAACTATGCAGTGGATTTA+AGG + chr5_3:53006162-53006181 None:intergenic 35.0%
TAATTATACCGAGTGTAGCT+TGG - chr5_3:53006274-53006293 Msa0817650:intron 35.0%
TCTAAATTTGGCTATGCTAG+AGG + chr5_3:53006416-53006435 None:intergenic 35.0%
CTAAAATTCCGCTACACAAT+AGG + chr5_3:53006466-53006485 None:intergenic 35.0%
! ACTTTAGATTGGCCGAATTA+CGG + chr5_3:53006541-53006560 None:intergenic 35.0%
TGATGTTGAACCTAAAGAGT+TGG - chr5_3:53006771-53006790 Msa0817650:intron 35.0%
GATGTTGAACCTAAAGAGTT+GGG - chr5_3:53006772-53006791 Msa0817650:intron 35.0%
! ACAGCATAGTAAGCTTTTGT+AGG + chr5_3:53006802-53006821 None:intergenic 35.0%
AAAAGCTTACTATGCTGTTG+AGG - chr5_3:53006804-53006823 Msa0817650:intron 35.0%
! ATTCTGCTTTATGTGATGGA+AGG - chr5_3:53006914-53006933 Msa0817650:intron 35.0%
TTGAGGAAATAGGTATGTCA+TGG - chr5_3:53007074-53007093 Msa0817650:CDS 35.0%
GAAATAGGTATGTCATGGAA+TGG - chr5_3:53007079-53007098 Msa0817650:CDS 35.0%
! GATTTGCTCTGTAGATAGTT+TGG + chr5_3:53007257-53007276 None:intergenic 35.0%
ATACATATAGGAAAGGAGTG+GGG + chr5_3:53007343-53007362 None:intergenic 35.0%
CATACATATAGGAAAGGAGT+GGG + chr5_3:53007344-53007363 None:intergenic 35.0%
!!! TACACTCCATATTTTTGGTG+TGG - chr5_3:53007429-53007448 Msa0817650:intron 35.0%
! TGACAGTGTTGTTCAATAAC+CGG - chr5_3:53007524-53007543 Msa0817650:intron 35.0%
AGCGGTTATTGCTTACATAT+CGG - chr5_3:53007656-53007675 Msa0817650:intron 35.0%
TTAGTGATGAGAGTTTACCT+AGG + chr5_3:53007786-53007805 None:intergenic 35.0%
CAAAATCAATGACGTGTAAG+AGG + chr5_3:53007860-53007879 None:intergenic 35.0%
!!! CTTACACGTCATTGATTTTG+AGG - chr5_3:53007860-53007879 Msa0817650:intron 35.0%
TGAGGATTCATTGAAGTTGA+AGG - chr5_3:53007878-53007897 Msa0817650:intron 35.0%
TAATGATTATGTTGGGGAAG+AGG - chr5_3:53007928-53007947 Msa0817650:intron 35.0%
!! ATAGTGTAATGGGCAAATAG+TGG + chr5_3:53008148-53008167 None:intergenic 35.0%
!! TTTGGCAATCAGCTATTTTC+TGG - chr5_3:53008190-53008209 Msa0817650:intron 35.0%
!! TTGGCAATCAGCTATTTTCT+GGG - chr5_3:53008191-53008210 Msa0817650:intron 35.0%
ACATTTGCTTAGAGATGTGA+AGG - chr5_3:53008303-53008322 Msa0817650:intron 35.0%
!! TACATTGATTCCTTTCGAGT+TGG - chr5_3:53008378-53008397 Msa0817650:intron 35.0%
!! TTTTGTTGTCCTGTCTCTAA+TGG - chr5_3:53008401-53008420 Msa0817650:intron 35.0%
GACAATCTCGTTTGTCATAT+AGG - chr5_3:53008479-53008498 Msa0817650:intron 35.0%
TACAGGATCTCATGGTTTAA+GGG + chr5_3:53008594-53008613 None:intergenic 35.0%
ATACAGGATCTCATGGTTTA+AGG + chr5_3:53008595-53008614 None:intergenic 35.0%
CTATGAAACTATTGATGCTC+TGG - chr5_3:53008639-53008658 Msa0817650:CDS 35.0%
!!! TGCTTTCTTTAGGGTGTTTT+TGG - chr5_3:53008801-53008820 Msa0817650:intron 35.0%
!!! TTTAGGGTGTTTTTGGTTGT+AGG - chr5_3:53008808-53008827 Msa0817650:intron 35.0%
!!! TTAGGGTGTTTTTGGTTGTA+GGG - chr5_3:53008809-53008828 Msa0817650:intron 35.0%
!! TTTTGGTTGTAGGGTTTAGA+AGG - chr5_3:53008818-53008837 Msa0817650:intron 35.0%
TTTGGTTGTAGGGTTTAGAA+GGG - chr5_3:53008819-53008838 Msa0817650:intron 35.0%
GTTTATGGTAAAAAGCTCTG+TGG - chr5_3:53008968-53008987 Msa0817650:intron 35.0%
ACGTCCTAGCAAAATAAAAC+AGG + chr5_3:53009279-53009298 None:intergenic 35.0%
GTGTTATGCAATTTCCTCTA+TGG - chr5_3:53009390-53009409 Msa0817650:intron 35.0%
!! CCTTGTTGTTAATCAAGTTG+TGG + chr5_3:53009512-53009531 None:intergenic 35.0%
CCACAACTTGATTAACAACA+AGG - chr5_3:53009509-53009528 Msa0817650:intron 35.0%
! GTTATTGTTGTCTGCTGATT+TGG - chr5_3:53009567-53009586 Msa0817650:CDS 35.0%
TTTCTTATGTAACAAAGGCC+TGG + chr5_3:53009763-53009782 None:intergenic 35.0%
TGCTCAACAAAGAACATGAA+AGG - chr5_3:53009856-53009875 Msa0817650:intron 35.0%
GCTCAACAAAGAACATGAAA+GGG - chr5_3:53009857-53009876 Msa0817650:intron 35.0%
AAAACTTAAGAGTGACCAGA+AGG + chr5_3:53010012-53010031 None:intergenic 35.0%
! CACTCTTAAGTTTTTCTGCA+CGG - chr5_3:53010018-53010037 Msa0817650:CDS 35.0%
! ACTCTTAAGTTTTTCTGCAC+GGG - chr5_3:53010019-53010038 Msa0817650:CDS 35.0%
!!! TTTTGTTTCTGATTACCTGG+CGG - chr5_3:53010156-53010175 Msa0817650:five_prime_UTR 35.0%
CTTCTTGGTTCCTCTTTCAA+AGG - chr5_3:53005661-53005680 Msa0817650:three_prime_UTR 40.0%
! GCACTGACACTTCTGATTAA+AGG + chr5_3:53005784-53005803 None:intergenic 40.0%
ATGACAAGGATCCTAGCATT+TGG - chr5_3:53005877-53005896 Msa0817650:intron 40.0%
GCAATTAGGAGCTTATGCTA+CGG - chr5_3:53006206-53006225 Msa0817650:intron 40.0%
TGGGTTTGGCAAAATTACTG+TGG - chr5_3:53006305-53006324 Msa0817650:intron 40.0%
! GGTCAGTGTTGTTAAATAGC+AGG - chr5_3:53006375-53006394 Msa0817650:intron 40.0%
TACACAATAGGGCTACAAAG+CGG + chr5_3:53006454-53006473 None:intergenic 40.0%
TTTGTAGCCCTATTGTGTAG+CGG - chr5_3:53006455-53006474 Msa0817650:intron 40.0%
!! ACATCAGAGGCACTTTAGAT+TGG + chr5_3:53006552-53006571 None:intergenic 40.0%
! AATCTAAAGTGCCTCTGATG+TGG - chr5_3:53006551-53006570 Msa0817650:intron 40.0%
ATATGACTATGCCACATCAG+AGG + chr5_3:53006565-53006584 None:intergenic 40.0%
AGGTTGCGAGAAAATGTCAT+GGG + chr5_3:53006611-53006630 None:intergenic 40.0%
TAGGTTGCGAGAAAATGTCA+TGG + chr5_3:53006612-53006631 None:intergenic 40.0%
! TGACATTTTCTCGCAACCTA+AGG - chr5_3:53006612-53006631 Msa0817650:intron 40.0%
! CTATGTTCCAAATCCCGTTT+TGG - chr5_3:53006741-53006760 Msa0817650:intron 40.0%
GTAGGAATTCCCAACTCTTT+AGG + chr5_3:53006784-53006803 None:intergenic 40.0%
CATGAGCAGCAATTTCTGAT+TGG + chr5_3:53007051-53007070 None:intergenic 40.0%
AATTGCTGCTCATGAAGTTG+AGG - chr5_3:53007057-53007076 Msa0817650:CDS 40.0%
GCTCATGAAGTTGAGGAAAT+AGG - chr5_3:53007064-53007083 Msa0817650:CDS 40.0%
AGGGAACACAATTGTCTGTT+AGG + chr5_3:53007304-53007323 None:intergenic 40.0%
TACATATAGGAAAGGAGTGG+GGG + chr5_3:53007342-53007361 None:intergenic 40.0%
CCATACATATAGGAAAGGAG+TGG + chr5_3:53007345-53007364 None:intergenic 40.0%
CCACTCCTTTCCTATATGTA+TGG - chr5_3:53007342-53007361 Msa0817650:CDS 40.0%
GTGTGCCATACATATAGGAA+AGG + chr5_3:53007350-53007369 None:intergenic 40.0%
AACAACACTGTCATATGGAC+AGG + chr5_3:53007517-53007536 None:intergenic 40.0%
AATAACCGCTATCGCCAATA+TGG + chr5_3:53007646-53007665 None:intergenic 40.0%
! TTACCTAGGTCGTAGGTTTT+AGG + chr5_3:53007772-53007791 None:intergenic 40.0%
TCTCATCACTAAACTGCCTT+GGG - chr5_3:53007794-53007813 Msa0817650:intron 40.0%
TGGGGAAGAGGAGAATAATT+TGG - chr5_3:53007940-53007959 Msa0817650:intron 40.0%
! TACTCTTCTTTTCCTTGTGC+AGG - chr5_3:53008274-53008293 Msa0817650:intron 40.0%
GACAACAAAACCAACTCGAA+AGG + chr5_3:53008391-53008410 None:intergenic 40.0%
TACCTTGACCTTGTCATTGA+TGG - chr5_3:53008561-53008580 Msa0817650:intron 40.0%
TTCCATCAATGACAAGGTCA+AGG + chr5_3:53008566-53008585 None:intergenic 40.0%
GAAGCTTTCCATCAATGACA+AGG + chr5_3:53008572-53008591 None:intergenic 40.0%
GCAAATGATACAGGATCTCA+TGG + chr5_3:53008602-53008621 None:intergenic 40.0%
TGAGATCCTGTATCATTTGC+AGG - chr5_3:53008602-53008621 Msa0817650:CDS 40.0%
ATCCTGTATCATTTGCAGGT+TGG - chr5_3:53008606-53008625 Msa0817650:CDS 40.0%
AACCAACCTGCAAATGATAC+AGG + chr5_3:53008611-53008630 None:intergenic 40.0%
TGAAACTATTGATGCTCTGG+CGG - chr5_3:53008642-53008661 Msa0817650:intron 40.0%
ACCAAATGGTCCAGGAATTT+AGG - chr5_3:53008667-53008686 Msa0817650:intron 40.0%
ACCTAAATTCCTGGACCATT+TGG + chr5_3:53008671-53008690 None:intergenic 40.0%
TTGGTTGTAGGGTTTAGAAG+GGG - chr5_3:53008820-53008839 Msa0817650:intron 40.0%
TTGAGGGTTTAGGAGAAGAA+GGG + chr5_3:53008917-53008936 None:intergenic 40.0%
ATTGAGGGTTTAGGAGAAGA+AGG + chr5_3:53008918-53008937 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr5_3:53008927-53008946 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr5_3:53008933-53008952 None:intergenic 40.0%
! GATTTGATCAAGGCTTTTGC+AGG - chr5_3:53009330-53009349 Msa0817650:intron 40.0%
CACTTCTAATGAGAGACGAT+AGG + chr5_3:53009479-53009498 None:intergenic 40.0%
CAAAACATGGTAAAGCCCTA+AGG + chr5_3:53009667-53009686 None:intergenic 40.0%
TACAGCAGGAAGTTGAGATT+TGG - chr5_3:53009911-53009930 Msa0817650:intron 40.0%
ACAGCAGGAAGTTGAGATTT+GGG - chr5_3:53009912-53009931 Msa0817650:intron 40.0%
TTGTGATACTTGGAGTTCGA+AGG - chr5_3:53009939-53009958 Msa0817650:intron 40.0%
TGTGATACTTGGAGTTCGAA+GGG - chr5_3:53009940-53009959 Msa0817650:intron 40.0%
CGAGCAGAAGCAATATTACA+TGG + chr5_3:53010094-53010113 None:intergenic 40.0%
TGTAATATTGCTTCTGCTCG+TGG - chr5_3:53010094-53010113 Msa0817650:CDS 40.0%
!! GTAGCTGTTGGTGATATCGA+CGG + chr5_3:53005689-53005708 None:intergenic 45.0%
GCCGTTTGAAGAAGATGACA+AGG - chr5_3:53005863-53005882 Msa0817650:intron 45.0%
! TGTAGCTAAGGAGCATGTTG+TGG - chr5_3:53006059-53006078 Msa0817650:intron 45.0%
! GTAGCTAAGGAGCATGTTGT+GGG - chr5_3:53006060-53006079 Msa0817650:intron 45.0%
! TAGCTAAGGAGCATGTTGTG+GGG - chr5_3:53006061-53006080 Msa0817650:intron 45.0%
TATACCGAGTGTAGCTTGGT+TGG - chr5_3:53006278-53006297 Msa0817650:intron 45.0%
ATACCGAGTGTAGCTTGGTT+GGG - chr5_3:53006279-53006298 Msa0817650:intron 45.0%
TCGCGGAAAGTGGAAAATAG+CGG + chr5_3:53006493-53006512 None:intergenic 45.0%
TGCCATTGCTCACCGTAATT+CGG - chr5_3:53006526-53006545 Msa0817650:intron 45.0%
AGCTTACTATGCTGTTGAGG+AGG - chr5_3:53006807-53006826 Msa0817650:intron 45.0%
TGCTGTTGAGGAGGTTAAAG+AGG - chr5_3:53006816-53006835 Msa0817650:intron 45.0%
TGTTGAGGAGGTTAAAGAGG+TGG - chr5_3:53006819-53006838 Msa0817650:intron 45.0%
GTTGAGGAGGTTAAAGAGGT+GGG - chr5_3:53006820-53006839 Msa0817650:intron 45.0%
TGCCACTCAGAAGAGTCAAA+AGG - chr5_3:53007012-53007031 Msa0817650:intron 45.0%
!! GACCTTTTGACTCTTCTGAG+TGG + chr5_3:53007017-53007036 None:intergenic 45.0%
TCACAGAGAATATGCTTCCC+TGG - chr5_3:53007278-53007297 Msa0817650:intron 45.0%
CACAATTGTCTGTTAGGCCA+GGG + chr5_3:53007298-53007317 None:intergenic 45.0%
ACACAATTGTCTGTTAGGCC+AGG + chr5_3:53007299-53007318 None:intergenic 45.0%
AGACAATTGTGTTCCCTTCC+TGG - chr5_3:53007307-53007326 Msa0817650:intron 45.0%
GTGGTGTGTGCCATACATAT+AGG + chr5_3:53007355-53007374 None:intergenic 45.0%
ATAGCATAGCAGCGCTATAC+CGG + chr5_3:53007546-53007565 None:intergenic 45.0%
CTGCTATGCTATTGCACATC+AGG - chr5_3:53007554-53007573 Msa0817650:intron 45.0%
!! TTGCGTATCGACTTTCGTTG+CGG + chr5_3:53007591-53007610 None:intergenic 45.0%
TTCCACTACCACTGCAATAG+CGG - chr5_3:53007617-53007636 Msa0817650:intron 45.0%
ATGCTGAGTCGGTGATTAGA+TGG - chr5_3:53007732-53007751 Msa0817650:intron 45.0%
TGCTGAGTCGGTGATTAGAT+GGG - chr5_3:53007733-53007752 Msa0817650:intron 45.0%
ACTCCTAAAACCTACGACCT+AGG - chr5_3:53007766-53007785 Msa0817650:intron 45.0%
TGAGAGTTTACCTAGGTCGT+AGG + chr5_3:53007779-53007798 None:intergenic 45.0%
CTCTCATCACTAAACTGCCT+TGG - chr5_3:53007793-53007812 Msa0817650:intron 45.0%
!! GTGTAATGGGCAAATAGTGG+AGG + chr5_3:53008145-53008164 None:intergenic 45.0%
! TTCTTTTCCTTGTGCAGGAG+TGG - chr5_3:53008279-53008298 Msa0817650:intron 45.0%
AAATGTTCCACTCCTGCACA+AGG + chr5_3:53008289-53008308 None:intergenic 45.0%
!! AAAAGGCACCTCTGTTGCAA+GGG + chr5_3:53008344-53008363 None:intergenic 45.0%
TGCAAAACTCACAGCCTTGA+AGG - chr5_3:53008506-53008525 Msa0817650:intron 45.0%
GCAAAACTCACAGCCTTGAA+GGG - chr5_3:53008507-53008526 Msa0817650:intron 45.0%
TCTTGCATCCAAACCCTTCA+AGG + chr5_3:53008523-53008542 None:intergenic 45.0%
TTGTAGGGTTTAGAAGGGGA+AGG - chr5_3:53008824-53008843 Msa0817650:intron 45.0%
TGTAGGGTTTAGAAGGGGAA+GGG - chr5_3:53008825-53008844 Msa0817650:intron 45.0%
CTTAGGGTGTGTTTGGATTG+AGG + chr5_3:53008934-53008953 None:intergenic 45.0%
AAAGCTCTGTGGATAGTCAG+AGG - chr5_3:53008979-53008998 Msa0817650:intron 45.0%
!! TGAGCTAGCAAGTTGGTTAG+AGG - chr5_3:53009002-53009021 Msa0817650:intron 45.0%
!! GAGCTAGCAAGTTGGTTAGA+GGG - chr5_3:53009003-53009022 Msa0817650:intron 45.0%
!! AGCTAGCAAGTTGGTTAGAG+GGG - chr5_3:53009004-53009023 Msa0817650:intron 45.0%
GTGTGAGAAGGGAAATGAGA+TGG - chr5_3:53009063-53009082 Msa0817650:intron 45.0%
! TGTTAGTTTCGGCTTACGCT+TGG - chr5_3:53009096-53009115 Msa0817650:intron 45.0%
! GTTAGTTTCGGCTTACGCTT+GGG - chr5_3:53009097-53009116 Msa0817650:intron 45.0%
TGACATTAAGATTGGGCAGC+AGG + chr5_3:53009308-53009327 None:intergenic 45.0%
AACATGGTAAAGCCCTAAGG+AGG + chr5_3:53009664-53009683 None:intergenic 45.0%
TCTCAACTTCCTGCTGTACT+TGG + chr5_3:53009909-53009928 None:intergenic 45.0%
CAGGAAGTTGAGATTTGGGA+GGG - chr5_3:53009916-53009935 Msa0817650:intron 45.0%
TTTGGGAGGGTTGTGATACT+TGG - chr5_3:53009929-53009948 Msa0817650:intron 45.0%
! GTGACCAGAAGGTTTTCAGT+TGG + chr5_3:53010001-53010020 None:intergenic 45.0%
! ATCGACGGTGCCTTTGAAAG+AGG + chr5_3:53005674-53005693 None:intergenic 50.0%
GATATCACCAACAGCTACGC+CGG - chr5_3:53005691-53005710 Msa0817650:three_prime_UTR 50.0%
! AATTGTACCGGCGTAGCTGT+TGG + chr5_3:53005701-53005720 None:intergenic 50.0%
GTTGTGGGGTGGTATAGTAC+TGG - chr5_3:53006075-53006094 Msa0817650:intron 50.0%
ACTGTGTCAATCGCGGAAAG+TGG + chr5_3:53006503-53006522 None:intergenic 50.0%
TGCCACCTCACCATTCTTTC+TGG - chr5_3:53007395-53007414 Msa0817650:intron 50.0%
CTCCAGAAAGAATGGTGAGG+TGG + chr5_3:53007400-53007419 None:intergenic 50.0%
GAGCTCCAGAAAGAATGGTG+AGG + chr5_3:53007403-53007422 None:intergenic 50.0%
GAGAGGAGCTCCAGAAAGAA+TGG + chr5_3:53007408-53007427 None:intergenic 50.0%
TGCAATAGCGGTGGCCATAT+TGG - chr5_3:53007629-53007648 Msa0817650:intron 50.0%
GCTGAGTCGGTGATTAGATG+GGG - chr5_3:53007734-53007753 Msa0817650:intron 50.0%
! TATGGAGATTGGAGTGCCCA+AGG + chr5_3:53007813-53007832 None:intergenic 50.0%
!! CTCTGTTGCAAGGGTGCTAA+TGG + chr5_3:53008335-53008354 None:intergenic 50.0%
CATTAGCACCCTTGCAACAG+AGG - chr5_3:53008333-53008352 Msa0817650:intron 50.0%
!! CAAAAGGCACCTCTGTTGCA+AGG + chr5_3:53008345-53008364 None:intergenic 50.0%
ACTCACAGCCTTGAAGGGTT+TGG - chr5_3:53008512-53008531 Msa0817650:intron 50.0%
ATGCTCTGGCGGTTACCAAA+TGG - chr5_3:53008653-53008672 Msa0817650:intron 50.0%
GTAGGGTTTAGAAGGGGAAG+GGG - chr5_3:53008826-53008845 Msa0817650:intron 50.0%
TAGGGTTTAGAAGGGGAAGG+GGG - chr5_3:53008827-53008846 Msa0817650:intron 50.0%
GGTTTAGGAGAAGAAGGGAG+GGG + chr5_3:53008912-53008931 None:intergenic 50.0%
GGGTTTAGGAGAAGAAGGGA+GGG + chr5_3:53008913-53008932 None:intergenic 50.0%
AGGGTTTAGGAGAAGAAGGG+AGG + chr5_3:53008914-53008933 None:intergenic 50.0%
TCAGAGGTGAGCTAGCAAGT+TGG - chr5_3:53008995-53009014 Msa0817650:intron 50.0%
!! GCTAGCAAGTTGGTTAGAGG+GGG - chr5_3:53009005-53009024 Msa0817650:intron 50.0%
GGGAATGCCAAATTTCTCCG+AGG - chr5_3:53009124-53009143 Msa0817650:intron 50.0%
CAACGCTCCTCGGAGAAATT+TGG + chr5_3:53009134-53009153 None:intergenic 50.0%
!! GAGCGTTGTTCTGGGGTTAT+TGG - chr5_3:53009146-53009165 Msa0817650:intron 50.0%
CTTCCTGCTGTACTTGGTAC+AGG + chr5_3:53009903-53009922 None:intergenic 50.0%
GCAGGAAGTTGAGATTTGGG+AGG - chr5_3:53009915-53009934 Msa0817650:intron 50.0%
GGAGCCAACTGAAAACCTTC+TGG - chr5_3:53009994-53010013 Msa0817650:CDS 50.0%
GACGCGTTTGCGAGTGTCTT+TGG + chr5_3:53005632-53005651 None:intergenic 55.0%
CGCGTCGTTGGAGTTCTTCT+TGG - chr5_3:53005646-53005665 Msa0817650:three_prime_UTR 55.0%
! CTAAGGAGCATGTTGTGGGG+TGG - chr5_3:53006064-53006083 Msa0817650:intron 55.0%
CCACCCAACCAAGCTACACT+CGG + chr5_3:53006285-53006304 None:intergenic 55.0%
AGTGTAGCTTGGTTGGGTGG+TGG - chr5_3:53006285-53006304 Msa0817650:intron 55.0%
GTGTAGCTTGGTTGGGTGGT+GGG - chr5_3:53006286-53006305 Msa0817650:intron 55.0%
GGCACTCACTGTGTCAATCG+CGG + chr5_3:53006510-53006529 None:intergenic 55.0%
GGCCGAATTACGGTGAGCAA+TGG + chr5_3:53006531-53006550 None:intergenic 55.0%
GAAAGGAGTGGGGGAGTTAG+TGG + chr5_3:53007333-53007352 None:intergenic 55.0%
CACCGCTATTGCAGTGGTAG+TGG + chr5_3:53007622-53007641 None:intergenic 55.0%
CACTACCACTGCAATAGCGG+TGG - chr5_3:53007620-53007639 Msa0817650:intron 55.0%
TATGGCCACCGCTATTGCAG+TGG + chr5_3:53007628-53007647 None:intergenic 55.0%
GGTGGCCATATTGGCGATAG+CGG - chr5_3:53007638-53007657 Msa0817650:intron 55.0%
TGGCGGTTACCAAATGGTCC+AGG - chr5_3:53008659-53008678 Msa0817650:intron 55.0%
AGGGTTTAGAAGGGGAAGGG+GGG - chr5_3:53008828-53008847 Msa0817650:intron 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG + chr5_3:53008908-53008927 None:intergenic 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG + chr5_3:53008909-53008928 None:intergenic 55.0%
TTGGTTAGAGGGGGAGAGAG+AGG - chr5_3:53009014-53009033 Msa0817650:intron 55.0%
TGGTTAGAGGGGGAGAGAGA+GGG - chr5_3:53009015-53009034 Msa0817650:intron 55.0%
AGAGAGGGAACACGTGGAGT+CGG - chr5_3:53009030-53009049 Msa0817650:intron 55.0%
GGAGGGTAGGTGTGTGAGAA+GGG - chr5_3:53009052-53009071 Msa0817650:intron 55.0%
!! TTCTCCGAGGAGCGTTGTTC+TGG - chr5_3:53009137-53009156 Msa0817650:intron 55.0%
!! TCTCCGAGGAGCGTTGTTCT+GGG - chr5_3:53009138-53009157 Msa0817650:intron 55.0%
AACCCCAGAACAACGCTCCT+CGG + chr5_3:53009144-53009163 None:intergenic 55.0%
GTGCCTGTACCAAGTACAGC+AGG - chr5_3:53009897-53009916 Msa0817650:intron 55.0%
GACACTCGCAAACGCGTCGT+TGG - chr5_3:53005634-53005653 Msa0817650:three_prime_UTR 60.0%
CCGAGTGTAGCTTGGTTGGG+TGG - chr5_3:53006282-53006301 Msa0817650:intron 60.0%
!! GCTTGGTTGGGTGGTGGGTT+TGG - chr5_3:53006291-53006310 Msa0817650:intron 60.0%
GGGGAGTTAGTGGCCAGGAA+GGG + chr5_3:53007323-53007342 None:intergenic 60.0%
GGGTTTAGAAGGGGAAGGGG+GGG - chr5_3:53008829-53008848 Msa0817650:intron 60.0%
GAGAGGGAACACGTGGAGTC+GGG - chr5_3:53009031-53009050 Msa0817650:intron 60.0%
GGGAGGGTAGGTGTGTGAGA+AGG - chr5_3:53009051-53009070 Msa0817650:intron 60.0%
TTCGGCTTACGCTTGGGCAG+AGG - chr5_3:53009103-53009122 Msa0817650:intron 60.0%
TCGGCTTACGCTTGGGCAGA+GGG - chr5_3:53009104-53009123 Msa0817650:intron 60.0%
!! CTCCGAGGAGCGTTGTTCTG+GGG - chr5_3:53009139-53009158 Msa0817650:intron 60.0%
GGGGGAGTTAGTGGCCAGGA+AGG + chr5_3:53007324-53007343 None:intergenic 65.0%
GAGTGGGGGAGTTAGTGGCC+AGG + chr5_3:53007328-53007347 None:intergenic 65.0%
GGGGAGAGAGAGGGAACACG+TGG - chr5_3:53009024-53009043 Msa0817650:intron 65.0%
AGGGAACACGTGGAGTCGGG+AGG - chr5_3:53009034-53009053 Msa0817650:intron 65.0%
GGGAACACGTGGAGTCGGGA+GGG - chr5_3:53009035-53009054 Msa0817650:intron 65.0%
ACACGTGGAGTCGGGAGGGT+AGG - chr5_3:53009039-53009058 Msa0817650:intron 65.0%
CGGTTGTGAGCGAAGCCGCC+AGG + chr5_3:53010174-53010193 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 53005408 53010260 53005408 ID=Msa0817650;Name=Msa0817650
chr5_3 mRNA 53005408 53010260 53005408 ID=Msa0817650-mRNA-1;Parent=Msa0817650;Name=Msa0817650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=118|1|1|1|1|1|10|334|310
chr5_3 exon 53005408 53005813 53005408 ID=Msa0817650-mRNA-1:exon:15988;Parent=Msa0817650-mRNA-1
chr5_3 exon 53006138 53006223 53006138 ID=Msa0817650-mRNA-1:exon:15987;Parent=Msa0817650-mRNA-1
chr5_3 exon 53006317 53006374 53006317 ID=Msa0817650-mRNA-1:exon:15986;Parent=Msa0817650-mRNA-1
chr5_3 exon 53007045 53007167 53007045 ID=Msa0817650-mRNA-1:exon:15985;Parent=Msa0817650-mRNA-1
chr5_3 exon 53007314 53007372 53007314 ID=Msa0817650-mRNA-1:exon:15984;Parent=Msa0817650-mRNA-1
chr5_3 exon 53008583 53008658 53008583 ID=Msa0817650-mRNA-1:exon:15983;Parent=Msa0817650-mRNA-1
chr5_3 exon 53008831 53008927 53008831 ID=Msa0817650-mRNA-1:exon:15982;Parent=Msa0817650-mRNA-1
chr5_3 exon 53009523 53009604 53009523 ID=Msa0817650-mRNA-1:exon:15981;Parent=Msa0817650-mRNA-1
chr5_3 exon 53009714 53009806 53009714 ID=Msa0817650-mRNA-1:exon:15980;Parent=Msa0817650-mRNA-1
chr5_3 exon 53009956 53010260 53009956 ID=Msa0817650-mRNA-1:exon:15979;Parent=Msa0817650-mRNA-1
chr5_3 five_prime_UTR 53010143 53010260 53010143 ID=Msa0817650-mRNA-1:five_prime_utr;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53009956 53010142 53009956 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53009714 53009806 53009714 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53009523 53009604 53009523 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53008831 53008927 53008831 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53008583 53008658 53008583 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53007314 53007372 53007314 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53007045 53007167 53007045 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53006317 53006374 53006317 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53006138 53006223 53006138 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 CDS 53005742 53005813 53005742 ID=Msa0817650-mRNA-1:cds;Parent=Msa0817650-mRNA-1
chr5_3 three_prime_UTR 53005408 53005741 53005408 ID=Msa0817650-mRNA-1:three_prime_utr;Parent=Msa0817650-mRNA-1
Gene Sequence

>Msa0817650

ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCAATTGAAAAAGTTGTAGTTCATCCTTTAGTTTTACTCAGCATAGTTGATAACTACAATAGAGTCGCCAAAGACACTCGCAAACGCGTCGTTGGAGTTCTTCTTGGTTCCTCTTTCAAAGGCACCGTCGATATCACCAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCTAGCATTTGGTTTCTTGATCATAATTATCATGAATCAATGTTCTCTATGTTCAAGAGAATCAATGCTAAGGAGCATGTTGTGGGGTGGTATAGTACTGGACCGAAACTGCGAGAAAATGATCTTGATATTCATGCTTTATTCAATGACTATGTTCCAAATCCCGTTTTGGTTATAATTGATGTTGAACCTAAAGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAGGAGGTTAAAGAGAATGCCACTCAGAAGAGTCAAAAGGTCTTTGTGCATGTCCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACATTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATTTGCAGGACGTATTCAACCTGCTGCCCAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGTGAAAACTAATGATCAAATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCGAAATCAGTGCCTGTACCAAGTACAGCAGGAAGTTGA

Protein sequence

>Msa0817650

MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKSVPVPSTAGS*