AlfalfaGEDB | Msa0858130

M. sativa cultivar zhongmu-4 / Msa0858130

KEGG: K03038
GO: GO:0000003 GO:0000502 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032991 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369
PFAM: PF01398.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858130	XP_003616580.1	100.000	310	0	0	1	310	1	310	0.0	629

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858130	sp\|O24412\|PSD7A_ARATH	89.935	308	31	0	1	308	1	308	0.0	571

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858130	B7FLW2	100.000	310	0	0	1	310	1	310	0.0	629

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002230	Msa0858130	0.810027	1.413816e-50	-8.615850e-47
Msa0003890	Msa0858130	0.853586	2.166208e-61	-8.615850e-47
Msa0006110	Msa0858130	0.837288	5.677729e-57	-8.615850e-47
Msa0007440	Msa0858130	0.848183	7.211404e-60	-8.615850e-47
Msa0009180	Msa0858130	0.803669	3.121229e-49	-8.615850e-47
Msa0011960	Msa0858130	0.810585	1.071643e-50	-8.615850e-47
Msa0014710	Msa0858130	0.816082	6.641659e-52	-8.615850e-47
Msa0015090	Msa0858130	0.819691	1.016775e-52	-8.615850e-47
Msa0020410	Msa0858130	0.817772	2.773102e-52	-8.615850e-47
Msa0021210	Msa0858130	0.813355	2.669658e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858130	MtrunA17_Chr5g0436641	100.000	310	0	0	1	310	1	310	0.0	629
Msa0858130	MtrunA17_Chr3g0113191	94.822	309	16	0	1	309	1	309	0.0	598
Msa0858130	MtrunA17_Chr3g0113201	32.841	271	165	6	19	285	25	282	4.91e-35	128
Msa0858130	MtrunA17_Chr5g0436671	31.365	271	169	6	19	285	21	278	2.19e-31	119
Msa0858130	MtrunA17_Chr3g0079641	26.014	296	181	6	19	285	13	299	1.99e-23	98.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858130	AT5G05780.1	89.935	308	31	0	1	308	1	308	0.0	571
Msa0858130	AT3G11270.1	89.508	305	32	0	1	305	1	305	0.0	563
Msa0858130	AT5G05780.2	88.961	308	31	1	1	308	1	305	0.0	560
Msa0858130	AT3G11270.2	88.525	305	32	1	1	305	1	302	0.0	551
Msa0858130	AT2G39990.1	29.487	234	148	6	19	248	30	250	3.95e-25	102
Msa0858130	AT4G26430.1	25.081	307	191	7	19	295	13	310	7.64e-23	96.7
Msa0858130	AT5G56280.1	24.262	305	192	7	19	295	13	306	6.94e-22	94.4

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Find 84 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAGAGTGACCAGA+AGG	0.597853	5_4:+55269839	None:intergenic
AAAAGCTTACTATGCTGTTG+AGG	0.571528	5_4:-55273056	Msa0858130:CDS
AAAAGGCACCTCTGTTGCAA+GGG	0.618690	5_4:+55271512	None:intergenic
AAATCAGTGACATTAAGATT+GGG	0.537245	5_4:+55270536	None:intergenic
AACATCAATTATAACCAAAA+CGG	0.431934	5_4:+55273105	None:intergenic
AACCAACCTGCAAATGATAC+AGG	0.522061	5_4:+55271245	None:intergenic
AATACATGTAATATGGCACA+AGG	0.690752	5_4:-55269799	Msa0858130:three_prime_UTR
AATTGCTGCTCATGAAGTTG+AGG	0.565331	5_4:-55272802	Msa0858130:CDS
AATTGTACCGGCGTAGCTGT+TGG	0.654663	5_4:+55274198	None:intergenic
AATTTGTTGCAATAGTTGAT+AGG	0.369207	5_4:+55269641	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCACAACAACAACAAGAA+TGG	-	chr5_4:55269709-55269728	Msa0858130:three_prime_UTR	30.0%
ACTATGCTGAGTAAAACTAA+AGG	+	chr5_4:55269791-55269810	None:intergenic	30.0%
TCTATGTTCAAGAGAATCAA+TGG	-	chr5_4:55270135-55270154	Msa0858130:intron	30.0%
ATAGCTATGTTTATGACTCT+AGG	-	chr5_4:55270446-55270465	Msa0858130:intron	30.0%
TGTGGCATAGTAATTTAAAG+AGG	-	chr5_4:55270525-55270544	Msa0858130:CDS	30.0%
TTGTTAAATAGCAGGTATAG+CGG	-	chr5_4:55270585-55270604	Msa0858130:intron	30.0%
TCATACTAAATAGTGTGTTG+CGG	+	chr5_4:55270656-55270675	None:intergenic	30.0%
TAAAATTCCGCTACACAATA+GGG	+	chr5_4:55270703-55270722	None:intergenic	30.0%
GCAACCTAAGGATTAATAAT+TGG	-	chr5_4:55270862-55270881	Msa0858130:intron	30.0%
GAACATCAATAATCGATAAG+AGG	+	chr5_4:55270935-55270954	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	55269610	55274510	55269610	ID=Msa0858130;Name=Msa0858130
chr5_4	mRNA	55269610	55274510	55269610	ID=Msa0858130-mRNA-1;Parent=Msa0858130;Name=Msa0858130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=118\|1\|1\|1\|1\|1\|10\|334\|310
chr5_4	exon	55269610	55270015	55269610	ID=Msa0858130-mRNA-1:exon:16982;Parent=Msa0858130-mRNA-1
chr5_4	exon	55270340	55270425	55270340	ID=Msa0858130-mRNA-1:exon:16981;Parent=Msa0858130-mRNA-1
chr5_4	exon	55270519	55270576	55270519	ID=Msa0858130-mRNA-1:exon:16980;Parent=Msa0858130-mRNA-1
chr5_4	exon	55271252	55271374	55271252	ID=Msa0858130-mRNA-1:exon:16979;Parent=Msa0858130-mRNA-1
chr5_4	exon	55271521	55271579	55271521	ID=Msa0858130-mRNA-1:exon:16978;Parent=Msa0858130-mRNA-1
chr5_4	exon	55272796	55272871	55272796	ID=Msa0858130-mRNA-1:exon:16977;Parent=Msa0858130-mRNA-1
chr5_4	exon	55273045	55273141	55273045	ID=Msa0858130-mRNA-1:exon:16976;Parent=Msa0858130-mRNA-1
chr5_4	exon	55273773	55273854	55273773	ID=Msa0858130-mRNA-1:exon:16975;Parent=Msa0858130-mRNA-1
chr5_4	exon	55273964	55274056	55273964	ID=Msa0858130-mRNA-1:exon:16974;Parent=Msa0858130-mRNA-1
chr5_4	exon	55274206	55274510	55274206	ID=Msa0858130-mRNA-1:exon:16973;Parent=Msa0858130-mRNA-1
chr5_4	five_prime_UTR	55274393	55274510	55274393	ID=Msa0858130-mRNA-1:five_prime_utr;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55274206	55274392	55274206	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55273964	55274056	55273964	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55273773	55273854	55273773	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55273045	55273141	55273045	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55272796	55272871	55272796	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55271521	55271579	55271521	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55271252	55271374	55271252	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55270519	55270576	55270519	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55270340	55270425	55270340	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	CDS	55269944	55270015	55269944	ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4	three_prime_UTR	55269610	55269943	55269610	ID=Msa0858130-mRNA-1:three_prime_utr;Parent=Msa0858130-mRNA-1

Gene Sequence

>Msa0858130

ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCGATAGAAAAAGTTGTAGTTCATCCTTTAGTTTTACTCAGCATAGTTGATAACTACAATAGAGTCGCCAAAGACACTCGCAAACGCGTCGTTGGAGTTCTTCTTGGTTCCTCTTTCAAAGGCACCGTCGATATCACCAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCTAGCATTTGGTTTCTTGATCATAATTATCATGAATCAATGTTCTCTATGTTCAAGAGAATCAATGCTAAGGAGCATGTTGTGGGGTGGTATAGTACTGGACCGAAACTGCGAGAAAATGATCTTGATATTCATGCTTTATTCAATGACTATGTTCCAAATCCCGTTTTGGTTATAATTGATGTTGAACCTAAAGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAGGAGGTTAAAGAGAATGCCACTCAGAAGAGTCAAAAGGTCTTTGTGCATGTCCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACATTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATTTGCAGGACGTATTCAACCTGCTGCCCAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGTGAAAACTAATGATCAAATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCAAAATCAGTGCCTGTACCAAGTACAGCAGGAAGTTGA

Protein sequence

>Msa0858130

MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKSVPVPSTAGS*