AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858130 MtrunA17_Chr5g0436641 100.000 310 0 0 1 310 1 310 0.0 629
Msa0858130 MtrunA17_Chr3g0113191 94.822 309 16 0 1 309 1 309 0.0 598
Msa0858130 MtrunA17_Chr3g0113201 32.841 271 165 6 19 285 25 282 4.91e-35 128
Msa0858130 MtrunA17_Chr5g0436671 31.365 271 169 6 19 285 21 278 2.19e-31 119
Msa0858130 MtrunA17_Chr3g0079641 26.014 296 181 6 19 285 13 299 1.99e-23 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858130 AT5G05780.1 89.935 308 31 0 1 308 1 308 0.0 571
Msa0858130 AT3G11270.1 89.508 305 32 0 1 305 1 305 0.0 563
Msa0858130 AT5G05780.2 88.961 308 31 1 1 308 1 305 0.0 560
Msa0858130 AT3G11270.2 88.525 305 32 1 1 305 1 302 0.0 551
Msa0858130 AT2G39990.1 29.487 234 148 6 19 248 30 250 3.95e-25 102
Msa0858130 AT4G26430.1 25.081 307 191 7 19 295 13 310 7.64e-23 96.7
Msa0858130 AT5G56280.1 24.262 305 192 7 19 295 13 306 6.94e-22 94.4

Find 84 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACAGGATCTCATGGTTTA+AGG 0.226556 5_4:+55271261 None:intergenic
CGCGTCGTTGGAGTTCTTCT+TGG 0.238114 5_4:-55274250 Msa0858130:CDS
ATTATAACCAAAACGGGATT+TGG 0.243791 5_4:+55273112 None:intergenic
GTAGGAATTCCCAACTCTTT+AGG 0.247111 5_4:+55273079 None:intergenic
TACCTTGACCTTGTCATTGA+TGG 0.274529 5_4:-55271292 Msa0858130:CDS
TACAGCAGGAAGTTGAGATT+TGG 0.286847 5_4:-55269937 Msa0858130:exon
GACGCGTTTGCGAGTGTCTT+TGG 0.305618 5_4:+55274267 None:intergenic
CTCTGTTGCAAGGGTGCTAA+TGG 0.335329 5_4:+55271521 None:intergenic
GCTCATGAAGTTGAGGAAAT+AGG 0.335482 5_4:-55272795 Msa0858130:intron
TGAGATCCTGTATCATTTGC+AGG 0.345264 5_4:-55271251 Msa0858130:intron
TTAATGAAATACATGTAATA+TGG 0.350470 5_4:-55269806 Msa0858130:three_prime_UTR
TTTGGGAGGGTTGTGATACT+TGG 0.355039 5_4:-55269919 Msa0858130:three_prime_UTR
CTATGTTCCAAATCCCGTTT+TGG 0.360839 5_4:-55273119 Msa0858130:CDS
AATTTGTTGCAATAGTTGAT+AGG 0.369207 5_4:+55269641 None:intergenic
TGCGAATCGATGAATGAATA+TGG 0.372061 5_4:+55274446 None:intergenic
CAAATCAGTGACATTAAGAT+TGG 0.377033 5_4:+55270535 None:intergenic
ACAGCAGGAAGTTGAGATTT+GGG 0.387193 5_4:-55269936 Msa0858130:exon
ACATCAATTATAACCAAAAC+GGG 0.396892 5_4:+55273106 None:intergenic
ACTCACAGCCTTGAAGGGTT+TGG 0.398386 5_4:-55271341 Msa0858130:CDS
TCTTGCATCCAAACCCTTCA+AGG 0.405808 5_4:+55271333 None:intergenic
GGAGCCAACTGAAAACCTTC+TGG 0.414877 5_4:-55269854 Msa0858130:three_prime_UTR
CATGAGCAGCAATTTCTGAT+TGG 0.415675 5_4:+55272811 None:intergenic
TGATAGGTATTTCTATTAAA+CGG 0.416117 5_4:+55269657 None:intergenic
ATGACAAGGATCCTAGCATT+TGG 0.417257 5_4:-55274019 Msa0858130:CDS
CTTCTTGGTTCCTCTTTCAA+AGG 0.424962 5_4:-55274235 Msa0858130:CDS
AACATCAATTATAACCAAAA+CGG 0.431934 5_4:+55273105 None:intergenic
TAATGTCACTGATTTGATCA+AGG 0.437836 5_4:-55270528 Msa0858130:CDS
TGACATTAAGATTGGGCAGC+AGG 0.443727 5_4:+55270543 None:intergenic
GATGTTGAACCTAAAGAGTT+GGG 0.449227 5_4:-55273088 Msa0858130:CDS
TACAGGATCTCATGGTTTAA+GGG 0.462303 5_4:+55271262 None:intergenic
TGCAAAACTCACAGCCTTGA+AGG 0.463569 5_4:-55271347 Msa0858130:CDS
TGTAGCTAAGGAGCATGTTG+TGG 0.468792 5_4:-55273837 Msa0858130:intron
TGTAATATTGCTTCTGCTCG+TGG 0.472472 5_4:-55269754 Msa0858130:three_prime_UTR
TCCTTGTCATCTTCTTCAAA+CGG 0.478344 5_4:+55274032 None:intergenic
TCTCAACTTCCTGCTGTACT+TGG 0.483401 5_4:+55269942 None:intergenic
TGATGTTGAACCTAAAGAGT+TGG 0.483855 5_4:-55273089 Msa0858130:CDS
ATTCACAACAACAACAAGAA+TGG 0.485457 5_4:-55274389 Msa0858130:exon
GTAGCTAAGGAGCATGTTGT+GGG 0.499396 5_4:-55273836 Msa0858130:intron
TCTATGTTCAAGAGAATCAA+TGG 0.505078 5_4:-55273963 Msa0858130:intron
TGCTCAACAAAGAACATGAA+AGG 0.510479 5_4:-55269992 Msa0858130:CDS
GTTGTGGGGTGGTATAGTAC+TGG 0.515160 5_4:-55273821 Msa0858130:CDS
CTTCCTGCTGTACTTGGTAC+AGG 0.516124 5_4:+55269948 None:intergenic
AACCAACCTGCAAATGATAC+AGG 0.522061 5_4:+55271245 None:intergenic
TGCTGTTGAGGAGGTTAAAG+AGG 0.523785 5_4:-55273044 Msa0858130:intron
CGAGCAGAAGCAATATTACA+TGG 0.525516 5_4:+55269757 None:intergenic
GACACTCGCAAACGCGTCGT+TGG 0.526211 5_4:-55274262 Msa0858130:CDS
GAAAACTAATGATCAAATGC+TGG 0.532471 5_4:-55270402 Msa0858130:CDS
CCTTGTTGTTAATCAAGTTG+TGG 0.533219 5_4:+55270339 None:intergenic
GCTCAACAAAGAACATGAAA+GGG 0.533816 5_4:-55269991 Msa0858130:CDS
AAATCAGTGACATTAAGATT+GGG 0.537245 5_4:+55270536 None:intergenic
CAAAAGGCACCTCTGTTGCA+AGG 0.539561 5_4:+55271511 None:intergenic
CGGTTGTGAGCGAAGCCGCC+AGG 0.540318 5_4:+55269677 None:intergenic
TTGTGATACTTGGAGTTCGA+AGG 0.542435 5_4:-55269909 Msa0858130:three_prime_UTR
TGATCAAGAAACCAAATGCT+AGG 0.549445 5_4:+55274008 None:intergenic
CAGGAAGTTGAGATTTGGGA+GGG 0.550146 5_4:-55269932 Msa0858130:exon
ATCACGAAGAACAAAGAAAG+AGG 0.559871 5_4:-55274478 Msa0858130:five_prime_UTR
ACATTTGCTTAGAGATGTGA+AGG 0.560287 5_4:-55271550 Msa0858130:CDS
ATCGACGGTGCCTTTGAAAG+AGG 0.562674 5_4:+55274225 None:intergenic
GCAAAACTCACAGCCTTGAA+GGG 0.565234 5_4:-55271346 Msa0858130:CDS
AATTGCTGCTCATGAAGTTG+AGG 0.565331 5_4:-55272802 Msa0858130:CDS
ACTATGCTGAGTAAAACTAA+AGG 0.568083 5_4:+55274310 None:intergenic
GCAAATGATACAGGATCTCA+TGG 0.569112 5_4:+55271254 None:intergenic
TGCCACTCAGAAGAGTCAAA+AGG 0.570358 5_4:-55272847 Msa0858130:CDS
AAAAGCTTACTATGCTGTTG+AGG 0.571528 5_4:-55273056 Msa0858130:CDS
GTGCCTGTACCAAGTACAGC+AGG 0.578421 5_4:-55269951 Msa0858130:CDS
AGCTTACTATGCTGTTGAGG+AGG 0.588880 5_4:-55273053 Msa0858130:CDS
TTGTTGTTGTGAATCTTCAG+TGG 0.591375 5_4:+55274398 None:intergenic
CATTAGCACCCTTGCAACAG+AGG 0.592118 5_4:-55271520 Msa0858130:intron
AAAACTTAAGAGTGACCAGA+AGG 0.597853 5_4:+55269839 None:intergenic
TAAAATGATCAATACATGAA+CGG 0.604109 5_4:-55269875 Msa0858130:three_prime_UTR
CCACAACTTGATTAACAACA+AGG 0.604169 5_4:-55270339 Msa0858130:intron
TTCCATCAATGACAAGGTCA+AGG 0.607781 5_4:+55271290 None:intergenic
TGTGATACTTGGAGTTCGAA+GGG 0.611802 5_4:-55269908 Msa0858130:three_prime_UTR
GATATCACCAACAGCTACGC+CGG 0.611908 5_4:-55274205 Msa0858130:intron
AAAAGGCACCTCTGTTGCAA+GGG 0.618690 5_4:+55271512 None:intergenic
GCAGGAAGTTGAGATTTGGG+AGG 0.642480 5_4:-55269933 Msa0858130:exon
GCCGTTTGAAGAAGATGACA+AGG 0.651393 5_4:-55274033 Msa0858130:CDS
AATTGTACCGGCGTAGCTGT+TGG 0.654663 5_4:+55274198 None:intergenic
GTAGCTGTTGGTGATATCGA+CGG 0.656872 5_4:+55274210 None:intergenic
CTAAGGAGCATGTTGTGGGG+TGG 0.656967 5_4:-55273832 Msa0858130:CDS
CACTTCTAATGAGAGACGAT+AGG 0.662773 5_4:+55270372 None:intergenic
GAAGCTTTCCATCAATGACA+AGG 0.673682 5_4:+55271284 None:intergenic
TAGCTAAGGAGCATGTTGTG+GGG 0.682914 5_4:-55273835 Msa0858130:CDS
AATACATGTAATATGGCACA+AGG 0.690752 5_4:-55269799 Msa0858130:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGCATATTTTTTTATAT+TGG - chr5_4:55270185-55270204 Msa0858130:intron 10.0%
!!! TTTGCATATTTTTTTATATT+GGG - chr5_4:55270186-55270205 Msa0858130:intron 10.0%
!!! TATTTTTCATTTATGATTTT+TGG - chr5_4:55272417-55272436 Msa0858130:intron 10.0%
!!! TAATTAAGTGTTATTAATAA+CGG + chr5_4:55272464-55272483 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+TGG - chr5_4:55273104-55273123 Msa0858130:CDS 10.0%
!!! AAAGAAGAGTATAAATTTAT+AGG + chr5_4:55272510-55272529 None:intergenic 15.0%
!!! TGATTTGGTTTTATATTTAT+GGG - chr5_4:55273832-55273851 Msa0858130:CDS 15.0%
!! TTAATGAAATACATGTAATA+TGG - chr5_4:55274292-55274311 Msa0858130:CDS 15.0%
!! ATTGAAATTGAAAATTGTAC+CGG + chr5_4:55269915-55269934 None:intergenic 20.0%
!! TTCAATATAATTACATGTGT+CGG - chr5_4:55269943-55269962 Msa0858130:exon 20.0%
!! AAATTTGATGTGATTAAAGA+TGG - chr5_4:55270209-55270228 Msa0858130:intron 20.0%
!!! TGATTTATTTTTTGTAGCTA+AGG - chr5_4:55270249-55270268 Msa0858130:intron 20.0%
!! TTAAAAAAAAAACTATGCAG+TGG + chr5_4:55270372-55270391 None:intergenic 20.0%
!!! TTTTGTTTATTACTGCAATT+AGG - chr5_4:55270394-55270413 Msa0858130:CDS 20.0%
!! TCATAAACATAGCTATAAAA+AGG + chr5_4:55270442-55270461 None:intergenic 20.0%
!! AACATCAATTATAACCAAAA+CGG + chr5_4:55270996-55271015 None:intergenic 20.0%
!! ATATTTGCAAGAAAGATAAA+AGG + chr5_4:55271093-55271112 None:intergenic 20.0%
!!! ATTTGTCTAATTTGATTTCT+GGG + chr5_4:55271394-55271413 None:intergenic 20.0%
!!! TATTTGTCTAATTTGATTTC+TGG + chr5_4:55271395-55271414 None:intergenic 20.0%
!! AAAATAAAATAATGCTGAGT+CGG - chr5_4:55271966-55271985 Msa0858130:intron 20.0%
!! TATTAAGTGAAGAAAGAATA+TGG + chr5_4:55272076-55272095 None:intergenic 20.0%
!! ATCAATAGTTTCATAGATTA+TGG + chr5_4:55272880-55272899 None:intergenic 20.0%
!!! CCAGTTTTAAATTAAACTAT+GGG + chr5_4:55272964-55272983 None:intergenic 20.0%
!!! TCCAGTTTTAAATTAAACTA+TGG + chr5_4:55272965-55272984 None:intergenic 20.0%
!! AATTGTATTACTTGAAAACA+AGG + chr5_4:55273446-55273465 None:intergenic 20.0%
!!! CTGATTTGGTTTTATATTTA+TGG - chr5_4:55273831-55273850 Msa0858130:CDS 20.0%
!!! GTATTGATCATTTTAAACAA+CGG + chr5_4:55274218-55274237 None:intergenic 20.0%
!! TAAAATGATCAATACATGAA+CGG - chr5_4:55274223-55274242 Msa0858130:CDS 20.0%
!! AATCAGAAACAAAACAAAAA+AGG + chr5_4:55274400-55274419 None:intergenic 20.0%
!!! TGATAGGTATTTCTATTAAA+CGG + chr5_4:55274444-55274463 None:intergenic 20.0%
! TAAAAACGCAACAAATTTCA+TGG - chr5_4:55269738-55269757 Msa0858130:three_prime_UTR 25.0%
! GCACTGTTAAAAACAAATAA+AGG + chr5_4:55270047-55270066 None:intergenic 25.0%
! TGGTATGAAAGATTATTGTT+TGG - chr5_4:55270155-55270174 Msa0858130:intron 25.0%
!! TATAGCTTTTGCAAAAAATG+CGG - chr5_4:55270556-55270575 Msa0858130:CDS 25.0%
! AATAGCAGTTTGTCTAAATT+TGG + chr5_4:55270630-55270649 None:intergenic 25.0%
! ACAACCAATTATTAATCCTT+AGG + chr5_4:55270869-55270888 None:intergenic 25.0%
! ACATCAATTATAACCAAAAC+GGG + chr5_4:55270995-55271014 None:intergenic 25.0%
! GAAACTTAATTGTTAGATGT+AGG - chr5_4:55271197-55271216 Msa0858130:intron 25.0%
! TTGCATCATGAACAAAATAA+AGG + chr5_4:55271371-55271390 None:intergenic 25.0%
! AGAGAAACAAAATGAATTAG+TGG + chr5_4:55271619-55271638 None:intergenic 25.0%
!!! ATCCTCATTTTTAAATAGTG+AGG + chr5_4:55272154-55272173 None:intergenic 25.0%
! AATGAGGATAATGATTATGT+TGG - chr5_4:55272165-55272184 Msa0858130:intron 25.0%
! ATGAGGATAATGATTATGTT+GGG - chr5_4:55272166-55272185 Msa0858130:intron 25.0%
! TTACTTCTAATTTCTGTTTC+TGG - chr5_4:55272276-55272295 Msa0858130:intron 25.0%
! AAAATAGCAGATAGTGTAAT+GGG + chr5_4:55272403-55272422 None:intergenic 25.0%
! AAAAATAGCAGATAGTGTAA+TGG + chr5_4:55272404-55272423 None:intergenic 25.0%
! ATTGAAAAATACACCATTAG+AGG + chr5_4:55272662-55272681 None:intergenic 25.0%
!!! GATTATTCTTTTTTGACACA+AGG - chr5_4:55272692-55272711 Msa0858130:intron 25.0%
!! CCCATAGTTTAATTTAAAAC+TGG - chr5_4:55272961-55272980 Msa0858130:intron 25.0%
!! ATCAGATTTTTGCTTTCTTT+AGG - chr5_4:55273036-55273055 Msa0858130:intron 25.0%
!! TCAGATTTTTGCTTTCTTTA+GGG - chr5_4:55273037-55273056 Msa0858130:intron 25.0%
! TTCTCTATGTTATCTTGATT+TGG - chr5_4:55273465-55273484 Msa0858130:intron 25.0%
! TCTCTATGTTATCTTGATTT+GGG - chr5_4:55273466-55273485 Msa0858130:intron 25.0%
! AAATCAGTGACATTAAGATT+GGG + chr5_4:55273565-55273584 None:intergenic 25.0%
! AATCAATCAATAATCCATAG+AGG + chr5_4:55273657-55273676 None:intergenic 25.0%
!! AAGCTTTTCTAATGTAACAA+AGG + chr5_4:55274018-55274037 None:intergenic 25.0%
!!! AATTTGTTGCAATAGTTGAT+AGG + chr5_4:55274460-55274479 None:intergenic 25.0%
ATTCACAACAACAACAAGAA+TGG - chr5_4:55269709-55269728 Msa0858130:three_prime_UTR 30.0%
ACTATGCTGAGTAAAACTAA+AGG + chr5_4:55269791-55269810 None:intergenic 30.0%
TCTATGTTCAAGAGAATCAA+TGG - chr5_4:55270135-55270154 Msa0858130:intron 30.0%
! AAAACTATGCAGTGGATTTA+AGG + chr5_4:55270364-55270383 None:intergenic 30.0%
ATAGCTATGTTTATGACTCT+AGG - chr5_4:55270446-55270465 Msa0858130:intron 30.0%
TGTGGCATAGTAATTTAAAG+AGG - chr5_4:55270525-55270544 Msa0858130:CDS 30.0%
TTGTTAAATAGCAGGTATAG+CGG - chr5_4:55270585-55270604 Msa0858130:intron 30.0%
TCATACTAAATAGTGTGTTG+CGG + chr5_4:55270656-55270675 None:intergenic 30.0%
TAAAATTCCGCTACACAATA+GGG + chr5_4:55270703-55270722 None:intergenic 30.0%
GCAACCTAAGGATTAATAAT+TGG - chr5_4:55270862-55270881 Msa0858130:intron 30.0%
GAACATCAATAATCGATAAG+AGG + chr5_4:55270935-55270954 None:intergenic 30.0%
TTGATGTTCGTCTCAATTTA+TGG - chr5_4:55270946-55270965 Msa0858130:intron 30.0%
ATTATAACCAAAACGGGATT+TGG + chr5_4:55270989-55271008 None:intergenic 30.0%
AATCATTCTGCTTTATGTGA+TGG - chr5_4:55271148-55271167 Msa0858130:intron 30.0%
TAGATGTAGGAACTTAAGAA+TGG - chr5_4:55271210-55271229 Msa0858130:intron 30.0%
AAGAGAAACTGTTATGAAAC+TGG - chr5_4:55271424-55271443 Msa0858130:intron 30.0%
AAAAATATGGAGTGTATGAG+AGG + chr5_4:55271670-55271689 None:intergenic 30.0%
! TCTCATACACTCCATATTTT+TGG - chr5_4:55271669-55271688 Msa0858130:intron 30.0%
TAATGACCACACCAAAAATA+TGG + chr5_4:55271683-55271702 None:intergenic 30.0%
TATTGAACAACACTGTCATA+TGG + chr5_4:55271767-55271786 None:intergenic 30.0%
TGAAGAAAGAATATGGAGAT+TGG + chr5_4:55272069-55272088 None:intergenic 30.0%
TGCCTCACTATTTAAAAATG+AGG - chr5_4:55272149-55272168 Msa0858130:intron 30.0%
TGAGGATAATGATTATGTTG+GGG - chr5_4:55272167-55272186 Msa0858130:intron 30.0%
GTATAACAAAAGTGAGCAAA+AGG + chr5_4:55272606-55272625 None:intergenic 30.0%
!!! CTTTTTTGACACAAGGATAA+AGG - chr5_4:55272699-55272718 Msa0858130:intron 30.0%
CATATATCAACCTAAATTCC+TGG + chr5_4:55272925-55272944 None:intergenic 30.0%
AGCAAAAATCTGATCATTTC+AGG + chr5_4:55273030-55273049 None:intergenic 30.0%
AAAAAAACTTAGGGTGTGTT+TGG + chr5_4:55273186-55273205 None:intergenic 30.0%
!!! AACACACCCTAAGTTTTTTT+TGG - chr5_4:55273186-55273205 Msa0858130:intron 30.0%
!!! ACACACCCTAAGTTTTTTTT+GGG - chr5_4:55273187-55273206 Msa0858130:intron 30.0%
ACACACCCAAAAAAAACTTA+GGG + chr5_4:55273195-55273214 None:intergenic 30.0%
AACACACCCAAAAAAAACTT+AGG + chr5_4:55273196-55273215 None:intergenic 30.0%
!!! GTTTTTTTTGGGTGTGTTTA+TGG - chr5_4:55273198-55273217 Msa0858130:intron 30.0%
! GTTAGTCTGTTTGTTAGTTT+CGG - chr5_4:55273335-55273354 Msa0858130:intron 30.0%
GACATGGTAAAACACAATAT+TGG + chr5_4:55273507-55273526 None:intergenic 30.0%
TAGCAAAATAAAACAGGACA+TGG + chr5_4:55273523-55273542 None:intergenic 30.0%
!!! ATGTCCTGTTTTATTTTGCT+AGG - chr5_4:55273522-55273541 Msa0858130:intron 30.0%
CAAATCAGTGACATTAAGAT+TGG + chr5_4:55273566-55273585 None:intergenic 30.0%
!! TAATGTCACTGATTTGATCA+AGG - chr5_4:55273570-55273589 Msa0858130:intron 30.0%
GAAAACTAATGATCAAATGC+TGG - chr5_4:55273696-55273715 Msa0858130:intron 30.0%
AAATCAATTTAGTCCTCCTT+AGG - chr5_4:55273898-55273917 Msa0858130:intron 30.0%
AATCAATTTAGTCCTCCTTA+GGG - chr5_4:55273899-55273918 Msa0858130:intron 30.0%
AAAGCTCAAGAAACAAAACA+TGG + chr5_4:55273930-55273949 None:intergenic 30.0%
! TGAGCTTTAGTTAAGTTGTT+TGG - chr5_4:55273942-55273961 Msa0858130:intron 30.0%
! GAGCTTTAGTTAAGTTGTTT+GGG - chr5_4:55273943-55273962 Msa0858130:intron 30.0%
! TGGGTTGAATTGTTTGAAAT+TGG - chr5_4:55273962-55273981 Msa0858130:intron 30.0%
TGAATCAAAGTTTAGTATCC+AGG - chr5_4:55273992-55274011 Msa0858130:CDS 30.0%
AATACATGTAATATGGCACA+AGG - chr5_4:55274299-55274318 Msa0858130:CDS 30.0%
!!! TTGTTTTGTTTCTGATTACC+TGG - chr5_4:55274403-55274422 Msa0858130:five_prime_UTR 30.0%
ATCACGAAGAACAAAGAAAG+AGG - chr5_4:55269620-55269639 Msa0858130:three_prime_UTR 35.0%
TGCGAATCGATGAATGAATA+TGG + chr5_4:55269655-55269674 None:intergenic 35.0%
TCGCACACAGAACAAAAATT+AGG - chr5_4:55269670-55269689 Msa0858130:three_prime_UTR 35.0%
CGCACACAGAACAAAAATTA+GGG - chr5_4:55269671-55269690 Msa0858130:three_prime_UTR 35.0%
! TTGTTGTTGTGAATCTTCAG+TGG + chr5_4:55269703-55269722 None:intergenic 35.0%
TCCTTGTCATCTTCTTCAAA+CGG + chr5_4:55270069-55270088 None:intergenic 35.0%
TGATCAAGAAACCAAATGCT+AGG + chr5_4:55270093-55270112 None:intergenic 35.0%
! AGATCATTTTCTCGCAGTTT+CGG + chr5_4:55270304-55270323 None:intergenic 35.0%
TAATTATACCGAGTGTAGCT+TGG - chr5_4:55270476-55270495 Msa0858130:intron 35.0%
TCTAAATTTGGCTATGCTAG+AGG + chr5_4:55270618-55270637 None:intergenic 35.0%
TTTGTATCCCTATTGTGTAG+CGG - chr5_4:55270693-55270712 Msa0858130:intron 35.0%
CTAAAATTCCGCTACACAAT+AGG + chr5_4:55270704-55270723 None:intergenic 35.0%
TGATGTTGAACCTAAAGAGT+TGG - chr5_4:55271009-55271028 Msa0858130:intron 35.0%
GATGTTGAACCTAAAGAGTT+GGG - chr5_4:55271010-55271029 Msa0858130:intron 35.0%
! ACAGCATAGTAAGCTTTTGT+AGG + chr5_4:55271040-55271059 None:intergenic 35.0%
AAAAGCTTACTATGCTGTTG+AGG - chr5_4:55271042-55271061 Msa0858130:intron 35.0%
! ATTCTGCTTTATGTGATGGA+AGG - chr5_4:55271152-55271171 Msa0858130:intron 35.0%
TTGAGGAAATAGGTATGTCA+TGG - chr5_4:55271313-55271332 Msa0858130:CDS 35.0%
GAAATAGGTATGTCATGGAA+TGG - chr5_4:55271318-55271337 Msa0858130:CDS 35.0%
CTTTGCTCTGTAGATAGTTT+GGG + chr5_4:55271495-55271514 None:intergenic 35.0%
ATACATATAGGAAAGGAGTG+GGG + chr5_4:55271582-55271601 None:intergenic 35.0%
CATACATATAGGAAAGGAGT+GGG + chr5_4:55271583-55271602 None:intergenic 35.0%
!!! TACACTCCATATTTTTGGTG+TGG - chr5_4:55271674-55271693 Msa0858130:intron 35.0%
! TGACAGTGTTGTTCAATAAC+CGG - chr5_4:55271769-55271788 Msa0858130:intron 35.0%
AGCGGTTATTGCTTACATAT+CGG - chr5_4:55271901-55271920 Msa0858130:intron 35.0%
TTAGTGATGAGAGTTTACCT+AGG + chr5_4:55272031-55272050 None:intergenic 35.0%
TGAGGATTCATTGAAGTTGA+AGG - chr5_4:55272123-55272142 Msa0858130:intron 35.0%
TAATGATTATGTTGGGGAAG+AGG - chr5_4:55272173-55272192 Msa0858130:intron 35.0%
!! ATAGTGTAATGGGCAAATAG+TGG + chr5_4:55272393-55272412 None:intergenic 35.0%
!! TTTGGCAATCAGCTATTTTC+TGG - chr5_4:55272435-55272454 Msa0858130:intron 35.0%
!! TTGGCAATCAGCTATTTTCT+GGG - chr5_4:55272436-55272455 Msa0858130:intron 35.0%
ACATTTGCTTAGAGATGTGA+AGG - chr5_4:55272548-55272567 Msa0858130:intron 35.0%
AAAAATACACCATTAGAGGC+AGG + chr5_4:55272658-55272677 None:intergenic 35.0%
GACAATCTCGTTTGTCATAT+AGG - chr5_4:55272724-55272743 Msa0858130:intron 35.0%
TACAGGATCTCATGGTTTAA+GGG + chr5_4:55272839-55272858 None:intergenic 35.0%
ATACAGGATCTCATGGTTTA+AGG + chr5_4:55272840-55272859 None:intergenic 35.0%
CTATGAAACTATTGATGCTC+TGG - chr5_4:55272884-55272903 Msa0858130:intron 35.0%
!!! TGCTTTCTTTAGGGTGTTTT+TGG - chr5_4:55273046-55273065 Msa0858130:CDS 35.0%
!!! TTTAGGGTGTTTTTGGTTGT+AGG - chr5_4:55273053-55273072 Msa0858130:CDS 35.0%
!!! TTAGGGTGTTTTTGGTTGTA+GGG - chr5_4:55273054-55273073 Msa0858130:CDS 35.0%
!! TTTTGGTTGTAGGGTTTAGA+AGG - chr5_4:55273063-55273082 Msa0858130:CDS 35.0%
TTTGGTTGTAGGGTTTAGAA+GGG - chr5_4:55273064-55273083 Msa0858130:CDS 35.0%
GTTTATGGTAAAAAGCTCTG+TGG - chr5_4:55273213-55273232 Msa0858130:intron 35.0%
ACGTCCTAGCAAAATAAAAC+AGG + chr5_4:55273529-55273548 None:intergenic 35.0%
GTGTTATGCAATTTCCTCTA+TGG - chr5_4:55273640-55273659 Msa0858130:intron 35.0%
!! CCTTGTTGTTAATCAAGTTG+TGG + chr5_4:55273762-55273781 None:intergenic 35.0%
CCACAACTTGATTAACAACA+AGG - chr5_4:55273759-55273778 Msa0858130:intron 35.0%
! GTTATTGTTGTCTGCTGATT+TGG - chr5_4:55273817-55273836 Msa0858130:CDS 35.0%
TTTCTAATGTAACAAAGGCC+TGG + chr5_4:55274013-55274032 None:intergenic 35.0%
TGCTCAACAAAGAACATGAA+AGG - chr5_4:55274106-55274125 Msa0858130:intron 35.0%
GCTCAACAAAGAACATGAAA+GGG - chr5_4:55274107-55274126 Msa0858130:intron 35.0%
AAAACTTAAGAGTGACCAGA+AGG + chr5_4:55274262-55274281 None:intergenic 35.0%
! CACTCTTAAGTTTTTCTGCA+CGG - chr5_4:55274268-55274287 Msa0858130:CDS 35.0%
! ACTCTTAAGTTTTTCTGCAC+GGG - chr5_4:55274269-55274288 Msa0858130:CDS 35.0%
!!! TTTTGTTTCTGATTACCTGG+CGG - chr5_4:55274406-55274425 Msa0858130:five_prime_UTR 35.0%
CTTCTTGGTTCCTCTTTCAA+AGG - chr5_4:55269863-55269882 Msa0858130:three_prime_UTR 40.0%
! GCACTGACACTTCTGATTAA+AGG + chr5_4:55269986-55270005 None:intergenic 40.0%
ATGACAAGGATCCTAGCATT+TGG - chr5_4:55270079-55270098 Msa0858130:intron 40.0%
GCAATTAGGAGCTTATGCTA+CGG - chr5_4:55270408-55270427 Msa0858130:intron 40.0%
TGGGTTTGGCAAAATTACTG+TGG - chr5_4:55270507-55270526 Msa0858130:intron 40.0%
! GGTCAGTGTTGTTAAATAGC+AGG - chr5_4:55270577-55270596 Msa0858130:intron 40.0%
!! ACTTTGGATTGGCCGAATTA+CGG + chr5_4:55270779-55270798 None:intergenic 40.0%
ATATGACTATGCCACATCAG+AGG + chr5_4:55270803-55270822 None:intergenic 40.0%
AGGTTGCGAGAAAATGTCAT+GGG + chr5_4:55270849-55270868 None:intergenic 40.0%
TAGGTTGCGAGAAAATGTCA+TGG + chr5_4:55270850-55270869 None:intergenic 40.0%
! TGACATTTTCTCGCAACCTA+AGG - chr5_4:55270850-55270869 Msa0858130:intron 40.0%
! CTATGTTCCAAATCCCGTTT+TGG - chr5_4:55270979-55270998 Msa0858130:intron 40.0%
GTAGGAATTCCCAACTCTTT+AGG + chr5_4:55271022-55271041 None:intergenic 40.0%
CATGAGCAGCAATTTCTGAT+TGG + chr5_4:55271290-55271309 None:intergenic 40.0%
AATTGCTGCTCATGAAGTTG+AGG - chr5_4:55271296-55271315 Msa0858130:CDS 40.0%
GCTCATGAAGTTGAGGAAAT+AGG - chr5_4:55271303-55271322 Msa0858130:CDS 40.0%
GCTTTGCTCTGTAGATAGTT+TGG + chr5_4:55271496-55271515 None:intergenic 40.0%
AGGGAACACAATTGTCTGTT+AGG + chr5_4:55271543-55271562 None:intergenic 40.0%
TACATATAGGAAAGGAGTGG+GGG + chr5_4:55271581-55271600 None:intergenic 40.0%
CCATACATATAGGAAAGGAG+TGG + chr5_4:55271584-55271603 None:intergenic 40.0%
CCACTCCTTTCCTATATGTA+TGG - chr5_4:55271581-55271600 Msa0858130:intron 40.0%
CACTGCCATACATATAGGAA+AGG + chr5_4:55271589-55271608 None:intergenic 40.0%
CTTTCCTATATGTATGGCAG+TGG - chr5_4:55271587-55271606 Msa0858130:intron 40.0%
AACAACACTGTCATATGGAC+AGG + chr5_4:55271762-55271781 None:intergenic 40.0%
ATAGCATAGCAACGCTATAC+CGG + chr5_4:55271791-55271810 None:intergenic 40.0%
TTGCTATGCTATTGCACATC+AGG - chr5_4:55271799-55271818 Msa0858130:intron 40.0%
AATAACCGCTATCGCCAATA+TGG + chr5_4:55271891-55271910 None:intergenic 40.0%
! TTACCTAGGTCGTAGGTTTT+AGG + chr5_4:55272017-55272036 None:intergenic 40.0%
TCTCATCACTAAACTGCCTT+GGG - chr5_4:55272039-55272058 Msa0858130:intron 40.0%
CAGAATCAATGACGTGTAAG+AGG + chr5_4:55272105-55272124 None:intergenic 40.0%
!! CTTACACGTCATTGATTCTG+AGG - chr5_4:55272105-55272124 Msa0858130:intron 40.0%
TGGGGAAGAGGAGAATAATT+TGG - chr5_4:55272185-55272204 Msa0858130:intron 40.0%
! TACATTGAGTCCTTTCGAGT+TGG - chr5_4:55272623-55272642 Msa0858130:intron 40.0%
GACAACAAAACCAACTCGAA+AGG + chr5_4:55272636-55272655 None:intergenic 40.0%
!! TTTTGTTGTCCTGCCTCTAA+TGG - chr5_4:55272646-55272665 Msa0858130:intron 40.0%
TACCTTGACCTTGTCATTGA+TGG - chr5_4:55272806-55272825 Msa0858130:CDS 40.0%
TTCCATCAATGACAAGGTCA+AGG + chr5_4:55272811-55272830 None:intergenic 40.0%
GAAGCTTTCCATCAATGACA+AGG + chr5_4:55272817-55272836 None:intergenic 40.0%
GCAAATGATACAGGATCTCA+TGG + chr5_4:55272847-55272866 None:intergenic 40.0%
TGAGATCCTGTATCATTTGC+AGG - chr5_4:55272847-55272866 Msa0858130:CDS 40.0%
ATCCTGTATCATTTGCAGGT+TGG - chr5_4:55272851-55272870 Msa0858130:CDS 40.0%
AACCAACCTGCAAATGATAC+AGG + chr5_4:55272856-55272875 None:intergenic 40.0%
TGAAACTATTGATGCTCTGG+CGG - chr5_4:55272887-55272906 Msa0858130:intron 40.0%
ACCAAATGGTCCAGGAATTT+AGG - chr5_4:55272912-55272931 Msa0858130:intron 40.0%
ACCTAAATTCCTGGACCATT+TGG + chr5_4:55272916-55272935 None:intergenic 40.0%
TTGGTTGTAGGGTTTAGAAG+GGG - chr5_4:55273065-55273084 Msa0858130:CDS 40.0%
TTGAGGGTTTAGGAGAAGAA+GGG + chr5_4:55273162-55273181 None:intergenic 40.0%
ATTGAGGGTTTAGGAGAAGA+AGG + chr5_4:55273163-55273182 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr5_4:55273172-55273191 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + chr5_4:55273178-55273197 None:intergenic 40.0%
! TGTTAGTTTCGGCTTAAGCT+TGG - chr5_4:55273346-55273365 Msa0858130:intron 40.0%
! GTTAGTTTCGGCTTAAGCTT+GGG - chr5_4:55273347-55273366 Msa0858130:intron 40.0%
! GATTTGATCAAGGCTTTTGC+AGG - chr5_4:55273580-55273599 Msa0858130:intron 40.0%
CACTTCTAATGAGAGACGAT+AGG + chr5_4:55273729-55273748 None:intergenic 40.0%
CAAAACATGGTAAAGCCCTA+AGG + chr5_4:55273917-55273936 None:intergenic 40.0%
TACAGCAGGAAGTTGAGATT+TGG - chr5_4:55274161-55274180 Msa0858130:intron 40.0%
ACAGCAGGAAGTTGAGATTT+GGG - chr5_4:55274162-55274181 Msa0858130:intron 40.0%
TTGTGATACTTGGAGTTCGA+AGG - chr5_4:55274189-55274208 Msa0858130:intron 40.0%
TGTGATACTTGGAGTTCGAA+GGG - chr5_4:55274190-55274209 Msa0858130:intron 40.0%
CGAGCAGAAGCAATATTACA+TGG + chr5_4:55274344-55274363 None:intergenic 40.0%
TGTAATATTGCTTCTGCTCG+TGG - chr5_4:55274344-55274363 Msa0858130:CDS 40.0%
!! GTAGCTGTTGGTGATATCGA+CGG + chr5_4:55269891-55269910 None:intergenic 45.0%
GCCGTTTGAAGAAGATGACA+AGG - chr5_4:55270065-55270084 Msa0858130:intron 45.0%
! TGTAGCTAAGGAGCATGTTG+TGG - chr5_4:55270261-55270280 Msa0858130:intron 45.0%
! GTAGCTAAGGAGCATGTTGT+GGG - chr5_4:55270262-55270281 Msa0858130:intron 45.0%
! TAGCTAAGGAGCATGTTGTG+GGG - chr5_4:55270263-55270282 Msa0858130:intron 45.0%
TATACCGAGTGTAGCTTGGT+TGG - chr5_4:55270480-55270499 Msa0858130:intron 45.0%
ATACCGAGTGTAGCTTGGTT+GGG - chr5_4:55270481-55270500 Msa0858130:intron 45.0%
TGCCATTGCTCACCGTAATT+CGG - chr5_4:55270764-55270783 Msa0858130:intron 45.0%
!! ACATCAGAGGCACTTTGGAT+TGG + chr5_4:55270790-55270809 None:intergenic 45.0%
! AATCCAAAGTGCCTCTGATG+TGG - chr5_4:55270789-55270808 Msa0858130:intron 45.0%
AGCTTACTATGCTGTTGAGG+AGG - chr5_4:55271045-55271064 Msa0858130:intron 45.0%
TGCTGTTGAGGAGGTTAAAG+AGG - chr5_4:55271054-55271073 Msa0858130:intron 45.0%
TGTTGAGGAGGTTAAAGAGG+TGG - chr5_4:55271057-55271076 Msa0858130:intron 45.0%
GTTGAGGAGGTTAAAGAGGT+GGG - chr5_4:55271058-55271077 Msa0858130:intron 45.0%
TGCCACTCAGAAGAGTCAAA+AGG - chr5_4:55271251-55271270 Msa0858130:intron 45.0%
!! GACCTTTTGACTCTTCTGAG+TGG + chr5_4:55271256-55271275 None:intergenic 45.0%
TCACAGAGAATATGCTTCCC+TGG - chr5_4:55271517-55271536 Msa0858130:intron 45.0%
CACAATTGTCTGTTAGGCCA+GGG + chr5_4:55271537-55271556 None:intergenic 45.0%
ACACAATTGTCTGTTAGGCC+AGG + chr5_4:55271538-55271557 None:intergenic 45.0%
AGACAATTGTGTTCCCTTCC+TGG - chr5_4:55271546-55271565 Msa0858130:CDS 45.0%
! TGTGCCACTGCCATACATAT+AGG + chr5_4:55271594-55271613 None:intergenic 45.0%
!! TAGCGTATCGACTTTCGTTG+CGG + chr5_4:55271836-55271855 None:intergenic 45.0%
TTCCACTACCACTGCAATAG+CGG - chr5_4:55271862-55271881 Msa0858130:intron 45.0%
ATGCTGAGTCGGTGATTAGA+TGG - chr5_4:55271977-55271996 Msa0858130:intron 45.0%
TGCTGAGTCGGTGATTAGAT+GGG - chr5_4:55271978-55271997 Msa0858130:intron 45.0%
ACTCCTAAAACCTACGACCT+AGG - chr5_4:55272011-55272030 Msa0858130:intron 45.0%
TGAGAGTTTACCTAGGTCGT+AGG + chr5_4:55272024-55272043 None:intergenic 45.0%
CTCTCATCACTAAACTGCCT+TGG - chr5_4:55272038-55272057 Msa0858130:intron 45.0%
!! GTGTAATGGGCAAATAGTGG+AGG + chr5_4:55272390-55272409 None:intergenic 45.0%
TACTCTTCTTTCCCTTGTGC+AGG - chr5_4:55272519-55272538 Msa0858130:intron 45.0%
AATGTTCCACTCCTGCACAA+GGG + chr5_4:55272533-55272552 None:intergenic 45.0%
AAATGTTCCACTCCTGCACA+AGG + chr5_4:55272534-55272553 None:intergenic 45.0%
!! AAAAGGCACCTCTGTTGCAA+GGG + chr5_4:55272589-55272608 None:intergenic 45.0%
TGCAAAACTCACAGCCTTGA+AGG - chr5_4:55272751-55272770 Msa0858130:intron 45.0%
GCAAAACTCACAGCCTTGAA+GGG - chr5_4:55272752-55272771 Msa0858130:intron 45.0%
TCTTGCATCCAAACCCTTCA+AGG + chr5_4:55272768-55272787 None:intergenic 45.0%
TTGTAGGGTTTAGAAGGGGA+AGG - chr5_4:55273069-55273088 Msa0858130:CDS 45.0%
TGTAGGGTTTAGAAGGGGAA+GGG - chr5_4:55273070-55273089 Msa0858130:CDS 45.0%
CTTAGGGTGTGTTTGGATTG+AGG + chr5_4:55273179-55273198 None:intergenic 45.0%
AAAGCTCTGTGGATAGTCAG+AGG - chr5_4:55273224-55273243 Msa0858130:intron 45.0%
!! TGAGCTAGCAAGTTGGTTAG+AGG - chr5_4:55273247-55273266 Msa0858130:intron 45.0%
!! GAGCTAGCAAGTTGGTTAGA+GGG - chr5_4:55273248-55273267 Msa0858130:intron 45.0%
!! AGCTAGCAAGTTGGTTAGAG+GGG - chr5_4:55273249-55273268 Msa0858130:intron 45.0%
GTAAACGAGGTGTGTGAGAA+GGG - chr5_4:55273302-55273321 Msa0858130:intron 45.0%
GTGTGAGAAGGGAAATGAGA+TGG - chr5_4:55273313-55273332 Msa0858130:intron 45.0%
CAAAGCTCCTCGGAGAAATT+TGG + chr5_4:55273384-55273403 None:intergenic 45.0%
!! GAGCTTTGTTCTGGGGTTAT+TGG - chr5_4:55273396-55273415 Msa0858130:intron 45.0%
TGACATTAAGATTGGGCAGC+AGG + chr5_4:55273558-55273577 None:intergenic 45.0%
AACATGGTAAAGCCCTAAGG+AGG + chr5_4:55273914-55273933 None:intergenic 45.0%
TCTCAACTTCCTGCTGTACT+TGG + chr5_4:55274159-55274178 None:intergenic 45.0%
CAGGAAGTTGAGATTTGGGA+GGG - chr5_4:55274166-55274185 Msa0858130:intron 45.0%
TTTGGGAGGGTTGTGATACT+TGG - chr5_4:55274179-55274198 Msa0858130:intron 45.0%
! GTGACCAGAAGGTTTTCAGT+TGG + chr5_4:55274251-55274270 None:intergenic 45.0%
! ATCGACGGTGCCTTTGAAAG+AGG + chr5_4:55269876-55269895 None:intergenic 50.0%
GATATCACCAACAGCTACGC+CGG - chr5_4:55269893-55269912 Msa0858130:three_prime_UTR 50.0%
! AATTGTACCGGCGTAGCTGT+TGG + chr5_4:55269903-55269922 None:intergenic 50.0%
GTTGTGGGGTGGTATAGTAC+TGG - chr5_4:55270277-55270296 Msa0858130:intron 50.0%
ACTGTGTCAATCGCGGAAAG+TGG + chr5_4:55270741-55270760 None:intergenic 50.0%
!! ATGCCACATCAGAGGCACTT+TGG + chr5_4:55270795-55270814 None:intergenic 50.0%
TGCCACCTCACCATTCTTTC+TGG - chr5_4:55271640-55271659 Msa0858130:intron 50.0%
CTCCAGAAAGAATGGTGAGG+TGG + chr5_4:55271645-55271664 None:intergenic 50.0%
GAGCTCCAGAAAGAATGGTG+AGG + chr5_4:55271648-55271667 None:intergenic 50.0%
GAGAGGAGCTCCAGAAAGAA+TGG + chr5_4:55271653-55271672 None:intergenic 50.0%
TGCAATAGCGGTGGCCATAT+TGG - chr5_4:55271874-55271893 Msa0858130:intron 50.0%
GCTGAGTCGGTGATTAGATG+GGG - chr5_4:55271979-55271998 Msa0858130:intron 50.0%
! TATGGAGATTGGAGTGCCCA+AGG + chr5_4:55272058-55272077 None:intergenic 50.0%
TTCTTTCCCTTGTGCAGGAG+TGG - chr5_4:55272524-55272543 Msa0858130:intron 50.0%
!! CTCTGTTGCAAGGGTGCTAA+TGG + chr5_4:55272580-55272599 None:intergenic 50.0%
CATTAGCACCCTTGCAACAG+AGG - chr5_4:55272578-55272597 Msa0858130:intron 50.0%
!! CAAAAGGCACCTCTGTTGCA+AGG + chr5_4:55272590-55272609 None:intergenic 50.0%
ACTCACAGCCTTGAAGGGTT+TGG - chr5_4:55272757-55272776 Msa0858130:intron 50.0%
ATGCTCTGGCGGTTACCAAA+TGG - chr5_4:55272898-55272917 Msa0858130:intron 50.0%
GTAGGGTTTAGAAGGGGAAG+GGG - chr5_4:55273071-55273090 Msa0858130:CDS 50.0%
TAGGGTTTAGAAGGGGAAGG+GGG - chr5_4:55273072-55273091 Msa0858130:CDS 50.0%
GGTTTAGGAGAAGAAGGGAG+GGG + chr5_4:55273157-55273176 None:intergenic 50.0%
GGGTTTAGGAGAAGAAGGGA+GGG + chr5_4:55273158-55273177 None:intergenic 50.0%
AGGGTTTAGGAGAAGAAGGG+AGG + chr5_4:55273159-55273178 None:intergenic 50.0%
TCAGAGGTGAGCTAGCAAGT+TGG - chr5_4:55273240-55273259 Msa0858130:intron 50.0%
!! GCTAGCAAGTTGGTTAGAGG+GGG - chr5_4:55273250-55273269 Msa0858130:intron 50.0%
GGTAAACGAGGTGTGTGAGA+AGG - chr5_4:55273301-55273320 Msa0858130:intron 50.0%
GGGAATGCCAAATTTCTCCG+AGG - chr5_4:55273374-55273393 Msa0858130:intron 50.0%
!! TTCTCCGAGGAGCTTTGTTC+TGG - chr5_4:55273387-55273406 Msa0858130:intron 50.0%
!! TCTCCGAGGAGCTTTGTTCT+GGG - chr5_4:55273388-55273407 Msa0858130:intron 50.0%
AACCCCAGAACAAAGCTCCT+CGG + chr5_4:55273394-55273413 None:intergenic 50.0%
CTTCCTGCTGTACTTGGTAC+AGG + chr5_4:55274153-55274172 None:intergenic 50.0%
GCAGGAAGTTGAGATTTGGG+AGG - chr5_4:55274165-55274184 Msa0858130:intron 50.0%
GGAGCCAACTGAAAACCTTC+TGG - chr5_4:55274244-55274263 Msa0858130:CDS 50.0%
GACGCGTTTGCGAGTGTCTT+TGG + chr5_4:55269834-55269853 None:intergenic 55.0%
CGCGTCGTTGGAGTTCTTCT+TGG - chr5_4:55269848-55269867 Msa0858130:three_prime_UTR 55.0%
! CTAAGGAGCATGTTGTGGGG+TGG - chr5_4:55270266-55270285 Msa0858130:intron 55.0%
CCACCCAACCAAGCTACACT+CGG + chr5_4:55270487-55270506 None:intergenic 55.0%
AGTGTAGCTTGGTTGGGTGG+TGG - chr5_4:55270487-55270506 Msa0858130:intron 55.0%
GTGTAGCTTGGTTGGGTGGT+GGG - chr5_4:55270488-55270507 Msa0858130:intron 55.0%
GGCACTCACTGTGTCAATCG+CGG + chr5_4:55270748-55270767 None:intergenic 55.0%
GGCCGAATTACGGTGAGCAA+TGG + chr5_4:55270769-55270788 None:intergenic 55.0%
GAAAGGAGTGGGGGAGTTAG+TGG + chr5_4:55271572-55271591 None:intergenic 55.0%
CACCGCTATTGCAGTGGTAG+TGG + chr5_4:55271867-55271886 None:intergenic 55.0%
CACTACCACTGCAATAGCGG+TGG - chr5_4:55271865-55271884 Msa0858130:intron 55.0%
TATGGCCACCGCTATTGCAG+TGG + chr5_4:55271873-55271892 None:intergenic 55.0%
GGTGGCCATATTGGCGATAG+CGG - chr5_4:55271883-55271902 Msa0858130:intron 55.0%
TGGCGGTTACCAAATGGTCC+AGG - chr5_4:55272904-55272923 Msa0858130:intron 55.0%
AGGGTTTAGAAGGGGAAGGG+GGG - chr5_4:55273073-55273092 Msa0858130:CDS 55.0%
TAGGAGAAGAAGGGAGGGGA+GGG + chr5_4:55273153-55273172 None:intergenic 55.0%
TTAGGAGAAGAAGGGAGGGG+AGG + chr5_4:55273154-55273173 None:intergenic 55.0%
TTGGTTAGAGGGGGAGAGAG+AGG - chr5_4:55273259-55273278 Msa0858130:intron 55.0%
TGGTTAGAGGGGGAGAGAGA+GGG - chr5_4:55273260-55273279 Msa0858130:intron 55.0%
AGAGAGGGAACACGTGGAGT+CGG - chr5_4:55273275-55273294 Msa0858130:intron 55.0%
TTCGGCTTAAGCTTGGGCAG+AGG - chr5_4:55273353-55273372 Msa0858130:intron 55.0%
TCGGCTTAAGCTTGGGCAGA+GGG - chr5_4:55273354-55273373 Msa0858130:intron 55.0%
!! CTCCGAGGAGCTTTGTTCTG+GGG - chr5_4:55273389-55273408 Msa0858130:intron 55.0%
GTGCCTGTACCAAGTACAGC+AGG - chr5_4:55274147-55274166 Msa0858130:intron 55.0%
GACACTCGCAAACGCGTCGT+TGG - chr5_4:55269836-55269855 Msa0858130:three_prime_UTR 60.0%
CCGAGTGTAGCTTGGTTGGG+TGG - chr5_4:55270484-55270503 Msa0858130:intron 60.0%
!! GCTTGGTTGGGTGGTGGGTT+TGG - chr5_4:55270493-55270512 Msa0858130:intron 60.0%
GGGGAGTTAGTGGCCAGGAA+GGG + chr5_4:55271562-55271581 None:intergenic 60.0%
GGGTTTAGAAGGGGAAGGGG+GGG - chr5_4:55273074-55273093 Msa0858130:CDS 60.0%
GAGAGGGAACACGTGGAGTC+GGG - chr5_4:55273276-55273295 Msa0858130:intron 60.0%
TGGAGTCGGGAGGGTAAACG+AGG - chr5_4:55273289-55273308 Msa0858130:intron 60.0%
GGGGGAGTTAGTGGCCAGGA+AGG + chr5_4:55271563-55271582 None:intergenic 65.0%
GAGTGGGGGAGTTAGTGGCC+AGG + chr5_4:55271567-55271586 None:intergenic 65.0%
GGGGAGAGAGAGGGAACACG+TGG - chr5_4:55273269-55273288 Msa0858130:intron 65.0%
AGGGAACACGTGGAGTCGGG+AGG - chr5_4:55273279-55273298 Msa0858130:intron 65.0%
GGGAACACGTGGAGTCGGGA+GGG - chr5_4:55273280-55273299 Msa0858130:intron 65.0%
CGGTTGTGAGCGAAGCCGCC+AGG + chr5_4:55274424-55274443 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 55269610 55274510 55269610 ID=Msa0858130;Name=Msa0858130
chr5_4 mRNA 55269610 55274510 55269610 ID=Msa0858130-mRNA-1;Parent=Msa0858130;Name=Msa0858130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=118|1|1|1|1|1|10|334|310
chr5_4 exon 55269610 55270015 55269610 ID=Msa0858130-mRNA-1:exon:16982;Parent=Msa0858130-mRNA-1
chr5_4 exon 55270340 55270425 55270340 ID=Msa0858130-mRNA-1:exon:16981;Parent=Msa0858130-mRNA-1
chr5_4 exon 55270519 55270576 55270519 ID=Msa0858130-mRNA-1:exon:16980;Parent=Msa0858130-mRNA-1
chr5_4 exon 55271252 55271374 55271252 ID=Msa0858130-mRNA-1:exon:16979;Parent=Msa0858130-mRNA-1
chr5_4 exon 55271521 55271579 55271521 ID=Msa0858130-mRNA-1:exon:16978;Parent=Msa0858130-mRNA-1
chr5_4 exon 55272796 55272871 55272796 ID=Msa0858130-mRNA-1:exon:16977;Parent=Msa0858130-mRNA-1
chr5_4 exon 55273045 55273141 55273045 ID=Msa0858130-mRNA-1:exon:16976;Parent=Msa0858130-mRNA-1
chr5_4 exon 55273773 55273854 55273773 ID=Msa0858130-mRNA-1:exon:16975;Parent=Msa0858130-mRNA-1
chr5_4 exon 55273964 55274056 55273964 ID=Msa0858130-mRNA-1:exon:16974;Parent=Msa0858130-mRNA-1
chr5_4 exon 55274206 55274510 55274206 ID=Msa0858130-mRNA-1:exon:16973;Parent=Msa0858130-mRNA-1
chr5_4 five_prime_UTR 55274393 55274510 55274393 ID=Msa0858130-mRNA-1:five_prime_utr;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55274206 55274392 55274206 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55273964 55274056 55273964 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55273773 55273854 55273773 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55273045 55273141 55273045 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55272796 55272871 55272796 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55271521 55271579 55271521 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55271252 55271374 55271252 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55270519 55270576 55270519 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55270340 55270425 55270340 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 CDS 55269944 55270015 55269944 ID=Msa0858130-mRNA-1:cds;Parent=Msa0858130-mRNA-1
chr5_4 three_prime_UTR 55269610 55269943 55269610 ID=Msa0858130-mRNA-1:three_prime_utr;Parent=Msa0858130-mRNA-1
Gene Sequence

>Msa0858130

ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCGATAGAAAAAGTTGTAGTTCATCCTTTAGTTTTACTCAGCATAGTTGATAACTACAATAGAGTCGCCAAAGACACTCGCAAACGCGTCGTTGGAGTTCTTCTTGGTTCCTCTTTCAAAGGCACCGTCGATATCACCAACAGCTACGCCGTGCCGTTTGAAGAAGATGACAAGGATCCTAGCATTTGGTTTCTTGATCATAATTATCATGAATCAATGTTCTCTATGTTCAAGAGAATCAATGCTAAGGAGCATGTTGTGGGGTGGTATAGTACTGGACCGAAACTGCGAGAAAATGATCTTGATATTCATGCTTTATTCAATGACTATGTTCCAAATCCCGTTTTGGTTATAATTGATGTTGAACCTAAAGAGTTGGGAATTCCTACAAAAGCTTACTATGCTGTTGAGGAGGTTAAAGAGAATGCCACTCAGAAGAGTCAAAAGGTCTTTGTGCATGTCCAATCAGAAATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACATTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCAAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTATCATTTGCAGGACGTATTCAACCTGCTGCCCAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGTGAAAACTAATGATCAAATGCTGGTAATATACCTATCGTCTCTCATTAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCAAAATCAGTGCCTGTACCAAGTACAGCAGGAAGTTGA

Protein sequence

>Msa0858130

MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHALFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDQMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKSVPVPSTAGS*