Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1119260 | XP_013450257.2 | 88.685 | 327 | 14 | 1 | 1 | 327 | 1 | 304 | 0.0 | 585 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1119260 | sp|Q9ZT42|RHF2A_ARATH | 50.641 | 312 | 131 | 4 | 23 | 326 | 8 | 304 | 6.27e-96 | 291 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1119260 | A0A396H8F5 | 88.685 | 327 | 14 | 1 | 1 | 327 | 1 | 304 | 0.0 | 585 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003030 | Msa1119260 | 0.803462 | 3.446704e-49 | -8.615850e-47 |
Msa0146910 | Msa1119260 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
Msa1119260 | Msa1119310 | 0.922611 | 7.845585e-89 | -8.615850e-47 |
Msa1119260 | Msa1166760 | 0.890519 | 9.154683e-74 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1119260 | MtrunA17_Chr7g0267851 | 88.685 | 327 | 14 | 1 | 1 | 327 | 1 | 304 | 0.0 | 585 |
Msa1119260 | MtrunA17_Chr2g0322261 | 55.769 | 312 | 120 | 4 | 22 | 326 | 11 | 311 | 2.96e-110 | 325 |
Msa1119260 | MtrunA17_Chr2g0287991 | 36.170 | 282 | 144 | 8 | 45 | 320 | 35 | 286 | 6.94e-44 | 154 |
Msa1119260 | MtrunA17_Chr7g0248061 | 54.348 | 46 | 21 | 0 | 45 | 90 | 137 | 182 | 3.08e-12 | 64.3 |
Msa1119260 | MtrunA17_Chr8g0387191 | 54.348 | 46 | 21 | 0 | 45 | 90 | 153 | 198 | 1.62e-11 | 62.8 |
Msa1119260 | MtrunA17_Chr7g0220221 | 41.667 | 60 | 33 | 1 | 29 | 88 | 160 | 217 | 1.93e-11 | 63.2 |
Msa1119260 | MtrunA17_Chr8g0348651 | 52.174 | 46 | 22 | 0 | 45 | 90 | 137 | 182 | 6.82e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1119260 | AT5G22000.2 | 50.641 | 312 | 131 | 4 | 23 | 326 | 8 | 304 | 6.11e-97 | 291 |
Msa1119260 | AT5G22000.3 | 50.641 | 312 | 131 | 4 | 23 | 326 | 8 | 304 | 6.38e-97 | 291 |
Msa1119260 | AT5G22000.1 | 50.641 | 312 | 131 | 4 | 23 | 326 | 8 | 304 | 6.38e-97 | 291 |
Msa1119260 | AT5G22000.4 | 43.548 | 248 | 117 | 4 | 87 | 326 | 1 | 233 | 7.79e-51 | 171 |
Msa1119260 | AT4G14220.1 | 31.944 | 288 | 171 | 6 | 33 | 320 | 31 | 293 | 1.82e-31 | 121 |
Msa1119260 | AT4G00335.2 | 46.154 | 52 | 28 | 0 | 45 | 96 | 136 | 187 | 6.55e-11 | 61.2 |
Msa1119260 | AT4G00335.1 | 46.154 | 52 | 28 | 0 | 45 | 96 | 136 | 187 | 6.55e-11 | 61.2 |
Msa1119260 | AT4G00335.3 | 46.154 | 52 | 28 | 0 | 45 | 96 | 136 | 187 | 6.55e-11 | 61.2 |
Find 140 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATGACCTTTCTCTATTT+TGG | 0.114320 | 7_3:+68094902 | None:intergenic |
CGCCCTACTCTTGGAGGTTT+TGG | 0.127339 | 7_3:-68095698 | Msa1119260:CDS |
TGAGAGCTACAAACTTTCTT+AGG | 0.150952 | 7_3:+68098837 | None:intergenic |
TTCATCAGTTGAACCTAAAA+TGG | 0.166434 | 7_3:+68095394 | None:intergenic |
GGACTTTCAGTTTGACATTT+TGG | 0.167995 | 7_3:+68095287 | None:intergenic |
TTCTATTCTATTTGAATTAC+TGG | 0.186967 | 7_3:+68099426 | None:intergenic |
AAAACTCCGGCGGCGATTTC+CGG | 0.196054 | 7_3:-68098709 | Msa1119260:five_prime_UTR |
ATCAATGTGGATAAAGATTA+TGG | 0.213482 | 7_3:+68099272 | None:intergenic |
TTATGTTAACATCTTTCTTT+AGG | 0.242283 | 7_3:-68094425 | Msa1119260:three_prime_UTR |
AGTTCGACCATGTCAGAATT+TGG | 0.244465 | 7_3:-68094680 | Msa1119260:CDS |
TGGGATGCACTAGCAATTAT+AGG | 0.270887 | 7_3:+68094633 | None:intergenic |
CATTGACACTGCATTGAGTT+TGG | 0.273325 | 7_3:+68094849 | None:intergenic |
GTCTATATATATAGATTAAA+AGG | 0.274096 | 7_3:-68098197 | Msa1119260:five_prime_UTR |
TCTTCTTCACTAGATGTTAT+TGG | 0.283783 | 7_3:+68095326 | None:intergenic |
ACTGAAAGTCCCTCAACTTC+TGG | 0.284506 | 7_3:-68095275 | Msa1119260:CDS |
TATCATTGGAGTAAGTTTCT+TGG | 0.300253 | 7_3:+68095228 | None:intergenic |
TTGGTTCAAATTCTAGAAAA+AGG | 0.303718 | 7_3:-68094661 | Msa1119260:CDS |
AGTTGCTTAACTTTAGCATT+AGG | 0.307986 | 7_3:-68099181 | Msa1119260:five_prime_UTR |
CGCCTTGGTTTCCATCTTTG+AGG | 0.321971 | 7_3:+68097230 | None:intergenic |
GTAGGATCTTTCAAGCTAAT+AGG | 0.330819 | 7_3:+68095899 | None:intergenic |
CACTGGCTTCAACGCAATTT+CGG | 0.341340 | 7_3:+68094515 | None:intergenic |
AAACTCCGGCGGCGATTTCC+GGG | 0.345406 | 7_3:-68098708 | Msa1119260:five_prime_UTR |
GAACCATCCTCCAAATGATT+TGG | 0.345962 | 7_3:+68094556 | None:intergenic |
GTCTTTCATCGCCCTACTCT+TGG | 0.346696 | 7_3:-68095707 | Msa1119260:CDS |
ACATGAGAATCAACAAATTC+AGG | 0.356616 | 7_3:-68099049 | Msa1119260:five_prime_UTR |
ACCATTCCAGGACGCATTGC+AGG | 0.362971 | 7_3:+68096983 | None:intergenic |
TGGAGATAAGGAAGGGAGGA+AGG | 0.378488 | 7_3:-68098122 | Msa1119260:five_prime_UTR |
TGTTATAGACCACCGCTTGC+CGG | 0.387393 | 7_3:-68097017 | Msa1119260:intron |
GGGATGCACTAGCAATTATA+GGG | 0.396776 | 7_3:+68094634 | None:intergenic |
GGAAAAGTGGGTCATAAGTT+TGG | 0.399048 | 7_3:+68099118 | None:intergenic |
TTGATCTATTTATGATTATG+AGG | 0.400152 | 7_3:+68099456 | None:intergenic |
CGCGCTGGCGCAGGAGGAGG+GGG | 0.407883 | 7_3:-68098929 | Msa1119260:five_prime_UTR |
GATAAAAGAAATACCATTCC+AGG | 0.418034 | 7_3:+68096971 | None:intergenic |
GATGTATTTAGCTTACAATA+AGG | 0.427178 | 7_3:+68099324 | None:intergenic |
AAAGTGAATATTACAGTTGA+AGG | 0.437206 | 7_3:+68097105 | None:intergenic |
CAGCTACACATGGGCGTCAA+TGG | 0.439815 | 7_3:-68095575 | Msa1119260:CDS |
AATTTGTTGATTCTCATGTC+AGG | 0.439839 | 7_3:+68099053 | None:intergenic |
TTTGATGAATTCCATTGATT+GGG | 0.443007 | 7_3:+68094614 | None:intergenic |
TAAAATCAGTGAGGGAAAAG+TGG | 0.445191 | 7_3:+68099105 | None:intergenic |
CATTATCACAAAACTCTTCA+AGG | 0.448344 | 7_3:+68097130 | None:intergenic |
GAGAGCTACAAACTTTCTTA+GGG | 0.449124 | 7_3:+68098838 | None:intergenic |
GGTTCATAACCACCTATCAT+TGG | 0.460752 | 7_3:+68095214 | None:intergenic |
TTTCAAATGGTACAAGGGGT+TGG | 0.464012 | 7_3:-68094724 | Msa1119260:CDS |
AAGAAACTTACTCCAATGAT+AGG | 0.464477 | 7_3:-68095226 | Msa1119260:intron |
TATTTATGATTATGAGGATG+TGG | 0.464728 | 7_3:+68099462 | None:intergenic |
TTAGCGATTGTTGCATCAAT+CGG | 0.469150 | 7_3:-68095521 | Msa1119260:CDS |
GGACAACAAATTCGACCATC+TGG | 0.470051 | 7_3:-68095470 | Msa1119260:CDS |
TTTCATCGCCCTACTCTTGG+AGG | 0.471662 | 7_3:-68095704 | Msa1119260:CDS |
ACGCGCTGGCGCAGGAGGAG+GGG | 0.474195 | 7_3:-68098930 | Msa1119260:five_prime_UTR |
TGCTAGTGCATCCCAATCAA+TGG | 0.475980 | 7_3:-68094625 | Msa1119260:three_prime_UTR |
CAGTAGAACAAGAGAGAAAG+TGG | 0.477805 | 7_3:-68095757 | Msa1119260:CDS |
ATTAGCTTGAAAGATCCTAC+TGG | 0.480526 | 7_3:-68095896 | Msa1119260:CDS |
ATAGAAAGGGTAAGGAATGA+AGG | 0.481753 | 7_3:+68097958 | None:intergenic |
GTTTCACCTGCAATGCGTCC+TGG | 0.489130 | 7_3:-68096989 | Msa1119260:CDS |
TTGCCAACACATAGGACATT+GGG | 0.490978 | 7_3:+68095922 | None:intergenic |
ATTGTCAAAGGCCTCAAAGA+TGG | 0.491290 | 7_3:-68097241 | Msa1119260:intron |
GCAGAGTATCAGAAAATGAA+TGG | 0.491541 | 7_3:+68094875 | None:intergenic |
ATATATAGACTGTATTCTGT+TGG | 0.495203 | 7_3:+68098210 | None:intergenic |
TATAAAGAGTCAATTTCAAA+TGG | 0.499844 | 7_3:-68094737 | Msa1119260:CDS |
ACCTGCAATGCGTCCTGGAA+TGG | 0.503145 | 7_3:-68096984 | Msa1119260:intron |
CGCGTGATGTGTCTTCGCAC+TGG | 0.505800 | 7_3:+68094498 | None:intergenic |
GCTCTAACGTTGTGGAGATA+AGG | 0.508332 | 7_3:-68098134 | Msa1119260:five_prime_UTR |
AGATAAGGAAGGGAGGAAGG+AGG | 0.516656 | 7_3:-68098119 | Msa1119260:five_prime_UTR |
GTACAAGGGGTTGGAAGGAG+AGG | 0.516930 | 7_3:-68094715 | Msa1119260:CDS |
TTGGCCATTTGTTTCCGTGA+CGG | 0.517363 | 7_3:+68095247 | None:intergenic |
TTTCCAAATCATTTGGAGGA+TGG | 0.517475 | 7_3:-68094559 | Msa1119260:three_prime_UTR |
GACAGCATTTGCAGTGTCGC+CGG | 0.519015 | 7_3:-68098888 | Msa1119260:five_prime_UTR |
TCAACCGTCACGGAAACAAA+TGG | 0.523851 | 7_3:-68095251 | Msa1119260:CDS |
TTGGTGAGTTTGCTTTAACT+AGG | 0.526510 | 7_3:+68099137 | None:intergenic |
GTCAATTTCAAATGGTACAA+GGG | 0.526606 | 7_3:-68094729 | Msa1119260:CDS |
CAATAGTCAAGAACTGTTTG+AGG | 0.527587 | 7_3:-68095780 | Msa1119260:intron |
TGTTGATTTGAGAATAAGAA+GGG | 0.534896 | 7_3:+68095434 | None:intergenic |
AAATATCTATATGAAAGAAA+AGG | 0.535628 | 7_3:-68094332 | Msa1119260:three_prime_UTR |
AAGACATCAATATTCCTTGA+CGG | 0.535688 | 7_3:+68095725 | None:intergenic |
AAATGGTACAAGGGGTTGGA+AGG | 0.537898 | 7_3:-68094720 | Msa1119260:CDS |
GACGGTTGATCCAGAAGTTG+AGG | 0.539227 | 7_3:+68095265 | None:intergenic |
ATCCAAAACCTCCAAGAGTA+GGG | 0.541287 | 7_3:+68095696 | None:intergenic |
GATTAACTCAACTACTCGCC+CGG | 0.541769 | 7_3:+68098690 | None:intergenic |
TCGGTTGATTGCTTCTATCG+TGG | 0.544377 | 7_3:+68094534 | None:intergenic |
AAACTCGTGCCGGCAAGCGG+TGG | 0.544467 | 7_3:+68097008 | None:intergenic |
CAATAAACCAAAATAGAGAA+AGG | 0.545182 | 7_3:-68094909 | Msa1119260:CDS |
AAACAGTTTCTCGGAATCGC+CGG | 0.545357 | 7_3:+68098869 | None:intergenic |
TATATATAGATTAAAAGGCA+AGG | 0.548706 | 7_3:-68098192 | Msa1119260:five_prime_UTR |
AAAGTGAAAACAAAACAAGT+TGG | 0.549391 | 7_3:+68098668 | None:intergenic |
GAACCTAAAATGGATGAAGA+AGG | 0.550164 | 7_3:+68095404 | None:intergenic |
ATAAAAGCCGGTTTACGCGC+TGG | 0.551760 | 7_3:-68098944 | Msa1119260:five_prime_UTR |
TAGAAAGGGTAAGGAATGAA+GGG | 0.552848 | 7_3:+68097959 | None:intergenic |
AGAAATGCATCTATAAAAGC+CGG | 0.552909 | 7_3:-68098956 | Msa1119260:five_prime_UTR |
GGTTTACGCGCTGGCGCAGG+AGG | 0.553336 | 7_3:-68098935 | Msa1119260:five_prime_UTR |
ACTCGCCCGGAAATCGCCGC+CGG | 0.556074 | 7_3:+68098703 | None:intergenic |
AGTCAATTTCAAATGGTACA+AGG | 0.558268 | 7_3:-68094730 | Msa1119260:CDS |
CACCATGTTGGTCGAAGGGA+AGG | 0.559069 | 7_3:-68095491 | Msa1119260:CDS |
GTCCTTCCCTTCGACCAACA+TGG | 0.559958 | 7_3:+68095489 | None:intergenic |
AATCCAAAACCTCCAAGAGT+AGG | 0.560258 | 7_3:+68095695 | None:intergenic |
GGAGGAAGGAGGATTTATCA+AGG | 0.567181 | 7_3:-68098108 | Msa1119260:intron |
CATCAATCAACAAAAGAATG+AGG | 0.570616 | 7_3:+68097989 | None:intergenic |
AAAATCAGTGAGGGAAAAGT+GGG | 0.571193 | 7_3:+68099106 | None:intergenic |
GCTCCCAATGTCCTATGTGT+TGG | 0.573320 | 7_3:-68095925 | Msa1119260:CDS |
TCTATTCTATTTGAATTACT+GGG | 0.575184 | 7_3:+68099427 | None:intergenic |
TCAATTTCAAATGGTACAAG+GGG | 0.576916 | 7_3:-68094728 | Msa1119260:CDS |
TCAATAGTAGAAGAAACTGA+TGG | 0.577721 | 7_3:+68094464 | None:intergenic |
GAACACACCATGTTGGTCGA+AGG | 0.578887 | 7_3:-68095496 | Msa1119260:CDS |
GTTGCCAACACATAGGACAT+TGG | 0.587109 | 7_3:+68095921 | None:intergenic |
GGCCTCAAAGATGGAAACCA+AGG | 0.587642 | 7_3:-68097232 | Msa1119260:CDS |
ATGTTGATTTGAGAATAAGA+AGG | 0.590502 | 7_3:+68095433 | None:intergenic |
ACGGTTGATCCAGAAGTTGA+GGG | 0.590950 | 7_3:+68095266 | None:intergenic |
GTGAAACTCGTGCCGGCAAG+CGG | 0.593105 | 7_3:+68097005 | None:intergenic |
AATAAAACATACCTTCGTTG+AGG | 0.594994 | 7_3:+68097929 | None:intergenic |
ATTCGTTGTAAAATCAGTGA+GGG | 0.595357 | 7_3:+68099097 | None:intergenic |
ATATATAGATTAAAAGGCAA+GGG | 0.595950 | 7_3:-68098191 | Msa1119260:five_prime_UTR |
TTTCGTTCAACAGCTACACA+TGG | 0.598136 | 7_3:-68095585 | Msa1119260:intron |
AACACACCATGTTGGTCGAA+GGG | 0.603686 | 7_3:-68095495 | Msa1119260:CDS |
AAAACAAACAAATTTGGTCA+AGG | 0.603956 | 7_3:+68099011 | None:intergenic |
TAACGTTGTGGAGATAAGGA+AGG | 0.604670 | 7_3:-68098130 | Msa1119260:five_prime_UTR |
GTTGTGGAGATAAGGAAGGG+AGG | 0.609221 | 7_3:-68098126 | Msa1119260:five_prime_UTR |
TTAGCTTGAAAGATCCTACT+GGG | 0.609832 | 7_3:-68095895 | Msa1119260:intron |
TGCAGTTATTTACATCAATG+TGG | 0.610150 | 7_3:+68099259 | None:intergenic |
ATGTTGTTGCTCTAACGTTG+TGG | 0.610848 | 7_3:-68098142 | Msa1119260:five_prime_UTR |
AACTCAATGCAGTGTCAATG+AGG | 0.616102 | 7_3:-68094846 | Msa1119260:intron |
GGTGGTTGACCATGACCAGA+TGG | 0.618290 | 7_3:+68095455 | None:intergenic |
AACGTTGTGGAGATAAGGAA+GGG | 0.619860 | 7_3:-68098129 | Msa1119260:five_prime_UTR |
AACTTCTGGATCAACCGTCA+CGG | 0.620578 | 7_3:-68095261 | Msa1119260:CDS |
TCTCATGTCAGGATTTACAA+TGG | 0.621399 | 7_3:+68099064 | None:intergenic |
ATTTGAACCAAATTCTGACA+TGG | 0.622289 | 7_3:+68094673 | None:intergenic |
TGATTGATGTTGAATCAAGC+GGG | 0.626336 | 7_3:+68099370 | None:intergenic |
AGAACAAGAGAGAAAGTGGA+GGG | 0.629551 | 7_3:-68095753 | Msa1119260:CDS |
TTCGTTCAACAGCTACACAT+GGG | 0.632627 | 7_3:-68095584 | Msa1119260:intron |
CAAATTCGACCATCTGGTCA+TGG | 0.633887 | 7_3:-68095464 | Msa1119260:CDS |
ATTGCAGGTGAAACTCGTGC+CGG | 0.635125 | 7_3:+68096998 | None:intergenic |
TTGATTGATGTTGAATCAAG+CGG | 0.637430 | 7_3:+68099369 | None:intergenic |
AGTGGAGGGTTACTCCGTCA+AGG | 0.637839 | 7_3:-68095739 | Msa1119260:CDS |
CTAATAGGTTGCCAACACAT+AGG | 0.640955 | 7_3:+68095914 | None:intergenic |
ATCGGAAGAACACACCATGT+TGG | 0.642131 | 7_3:-68095503 | Msa1119260:CDS |
AAATTCATGACCAACCCAGT+AGG | 0.663616 | 7_3:+68095881 | None:intergenic |
AAATCATATGACATCAGCTG+CGG | 0.669781 | 7_3:-68097205 | Msa1119260:CDS |
TAGAACAAGAGAGAAAGTGG+AGG | 0.671560 | 7_3:-68095754 | Msa1119260:CDS |
TGATTTGAGAATAAGAAGGG+TGG | 0.676918 | 7_3:+68095437 | None:intergenic |
AGAAAGGGTAAGGAATGAAG+GGG | 0.677639 | 7_3:+68097960 | None:intergenic |
CATTCGTTGTAAAATCAGTG+AGG | 0.678142 | 7_3:+68099096 | None:intergenic |
CTCAAAGATGGAAACCAAGG+CGG | 0.690040 | 7_3:-68097229 | Msa1119260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAACTTTTTTTTTTTTGA+AGG | - | chr7_3:68095347-68095366 | Msa1119260:CDS | 10.0% |
!! | AAAAAAAAAAAAATTATGCA+TGG | + | chr7_3:68095434-68095453 | None:intergenic | 10.0% |
!!! | TTTTACATTTAAATTTTATC+TGG | - | chr7_3:68095932-68095951 | Msa1119260:CDS | 10.0% |
!!! | TTTTAGGAAATTGATTTTAT+GGG | + | chr7_3:68094562-68094581 | None:intergenic | 15.0% |
!!! | TGAAAATTTTACATTTGAAT+AGG | + | chr7_3:68094977-68094996 | None:intergenic | 15.0% |
!! | TTCAAAATGAGAAAAATATT+GGG | - | chr7_3:68095163-68095182 | Msa1119260:intron | 15.0% |
!!! | CTTATTTAACATATTTTGAT+TGG | - | chr7_3:68095380-68095399 | Msa1119260:CDS | 15.0% |
!! | TACCAAAAAAAAAAAAAAAG+AGG | - | chr7_3:68095527-68095546 | Msa1119260:CDS | 15.0% |
!!! | AACCTCTTTTTTTTTTTTTT+TGG | + | chr7_3:68095532-68095551 | None:intergenic | 15.0% |
!! | GTCTATATATATAGATTAAA+AGG | - | chr7_3:68095586-68095605 | Msa1119260:intron | 15.0% |
!! | AGAAAATGTATAGATAATAA+AGG | + | chr7_3:68095722-68095741 | None:intergenic | 15.0% |
!! | ACAATATTATTAAGAAATGA+TGG | + | chr7_3:68095751-68095770 | None:intergenic | 15.0% |
!! | ATATAACTACAACAATTTAT+TGG | - | chr7_3:68096024-68096043 | Msa1119260:intron | 15.0% |
!! | AGAGATACAAATTAAAATTT+AGG | + | chr7_3:68097227-68097246 | None:intergenic | 15.0% |
!!! | TGAAATTACATTTTTATGTT+AGG | + | chr7_3:68097423-68097442 | None:intergenic | 15.0% |
!!! | TTTAAAGCCAAAATAATATT+AGG | + | chr7_3:68097626-68097645 | None:intergenic | 15.0% |
!! | TTAACATGTAATTAGATATA+TGG | + | chr7_3:68097754-68097773 | None:intergenic | 15.0% |
!!! | ATCTATGTATTTTATCAAAT+CGG | - | chr7_3:68098993-68099012 | Msa1119260:five_prime_UTR | 15.0% |
!!! | ATAGTACATGAAATTTTTTA+AGG | + | chr7_3:68099423-68099442 | None:intergenic | 15.0% |
!! | AAATATCTATATGAAAGAAA+AGG | - | chr7_3:68099451-68099470 | Msa1119260:five_prime_UTR | 15.0% |
!! | TTGATCTATTTATGATTATG+AGG | + | chr7_3:68094330-68094349 | None:intergenic | 20.0% |
!! | TCTATTCTATTTGAATTACT+GGG | + | chr7_3:68094359-68094378 | None:intergenic | 20.0% |
!! | TTCTATTCTATTTGAATTAC+TGG | + | chr7_3:68094360-68094379 | None:intergenic | 20.0% |
!!! | CTTTTAGGAAATTGATTTTA+TGG | + | chr7_3:68094563-68094582 | None:intergenic | 20.0% |
!!! | AAAAAGAAGTGATTTCTTTT+AGG | + | chr7_3:68094578-68094597 | None:intergenic | 20.0% |
!!! | TTCTGAAAAACAAACAAATT+TGG | + | chr7_3:68094781-68094800 | None:intergenic | 20.0% |
!!! | ATATTTTTCTCATTTTGAAG+AGG | + | chr7_3:68095162-68095181 | None:intergenic | 20.0% |
!! | CTTCAAAATGAGAAAAATAT+TGG | - | chr7_3:68095162-68095181 | Msa1119260:intron | 20.0% |
!! | AAAAAAAAATTATGCATGGT+CGG | + | chr7_3:68095430-68095449 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTGGTACAATG+AGG | + | chr7_3:68095522-68095541 | None:intergenic | 20.0% |
!! | TATATATAGATTAAAAGGCA+AGG | - | chr7_3:68095591-68095610 | Msa1119260:intron | 20.0% |
!! | ATATATAGATTAAAAGGCAA+GGG | - | chr7_3:68095592-68095611 | Msa1119260:intron | 20.0% |
!! | ATTATAACTTCAAATGATCA+AGG | - | chr7_3:68095903-68095922 | Msa1119260:CDS | 20.0% |
!!! | ATTTAAATTTTATCTGGAGT+TGG | - | chr7_3:68095938-68095957 | Msa1119260:CDS | 20.0% |
!! | TAATATATTGTGTACAAAAG+AGG | + | chr7_3:68096496-68096515 | None:intergenic | 20.0% |
!! | CAATATATTATGTTTAACTC+TGG | - | chr7_3:68096506-68096525 | Msa1119260:intron | 20.0% |
!! | AAAGTTATTTGAAGAACATT+TGG | - | chr7_3:68096722-68096741 | Msa1119260:intron | 20.0% |
!! | GTTGGAAATATATAGAAAAA+TGG | - | chr7_3:68096889-68096908 | Msa1119260:intron | 20.0% |
!!! | TTAAAATTTAGGCTTTGTTT+GGG | + | chr7_3:68097216-68097235 | None:intergenic | 20.0% |
!!! | ATTAAAATTTAGGCTTTGTT+TGG | + | chr7_3:68097217-68097236 | None:intergenic | 20.0% |
!!! | TAATTTTTGCGAAGAAATAT+AGG | + | chr7_3:68098593-68098612 | None:intergenic | 20.0% |
!!! | ACTTGAATTTTTTTTAGATG+TGG | + | chr7_3:68098634-68098653 | None:intergenic | 20.0% |
!!! | TTTCTCTATTTTGGTTTATT+GGG | + | chr7_3:68098875-68098894 | None:intergenic | 20.0% |
!! | TATAAAGAGTCAATTTCAAA+TGG | - | chr7_3:68099046-68099065 | Msa1119260:five_prime_UTR | 20.0% |
!!! | TACTTATTTTCCAAATCATT+TGG | - | chr7_3:68099217-68099236 | Msa1119260:five_prime_UTR | 20.0% |
!! | TTATGTTAACATCTTTCTTT+AGG | - | chr7_3:68099358-68099377 | Msa1119260:five_prime_UTR | 20.0% |
! | TATTTATGATTATGAGGATG+TGG | + | chr7_3:68094324-68094343 | None:intergenic | 25.0% |
!! | GATGTATTTAGCTTACAATA+AGG | + | chr7_3:68094462-68094481 | None:intergenic | 25.0% |
! | ATCAATGTGGATAAAGATTA+TGG | + | chr7_3:68094514-68094533 | None:intergenic | 25.0% |
! | AAAACAAACAAATTTGGTCA+AGG | + | chr7_3:68094775-68094794 | None:intergenic | 25.0% |
! | AAAGTGAAAACAAAACAAGT+TGG | + | chr7_3:68095118-68095137 | None:intergenic | 25.0% |
!!! | TTGTTTTGTTTTCACTTTCA+CGG | - | chr7_3:68095120-68095139 | Msa1119260:intron | 25.0% |
! | TTTCACGGTAAAGTAAATTA+TGG | - | chr7_3:68095135-68095154 | Msa1119260:intron | 25.0% |
! | TTCACGGTAAAGTAAATTAT+GGG | - | chr7_3:68095136-68095155 | Msa1119260:intron | 25.0% |
! | ATATATAGACTGTATTCTGT+TGG | + | chr7_3:68095576-68095595 | None:intergenic | 25.0% |
! | GTTGAGGAAAAATATAGAAA+GGG | + | chr7_3:68095841-68095860 | None:intergenic | 25.0% |
! | ACTACAACAATTTAGAGAAA+GGG | + | chr7_3:68095993-68096012 | None:intergenic | 25.0% |
! | AACTACAACAATTTAGAGAA+AGG | + | chr7_3:68095994-68096013 | None:intergenic | 25.0% |
! | CTATGATTAAGATCATATCA+GGG | + | chr7_3:68096249-68096268 | None:intergenic | 25.0% |
! | ACTATGATTAAGATCATATC+AGG | + | chr7_3:68096250-68096269 | None:intergenic | 25.0% |
! | TTATAGATGATCTTCATGTT+TGG | - | chr7_3:68096298-68096317 | Msa1119260:intron | 25.0% |
!!! | TTATCGATTTTACCCAAAAT+TGG | + | chr7_3:68096376-68096395 | None:intergenic | 25.0% |
! | ATAATCATCGACAAAAATTC+AGG | + | chr7_3:68096421-68096440 | None:intergenic | 25.0% |
! | AAAGTGAATATTACAGTTGA+AGG | + | chr7_3:68096681-68096700 | None:intergenic | 25.0% |
! | GAACTCAAAAATTGTATTGA+GGG | + | chr7_3:68097066-68097085 | None:intergenic | 25.0% |
! | ATAAAAAATCTCCCTCATTT+GGG | + | chr7_3:68097090-68097109 | None:intergenic | 25.0% |
! | AATAAAAAATCTCCCTCATT+TGG | + | chr7_3:68097091-68097110 | None:intergenic | 25.0% |
! | AAGAAAATTTGAAGGTCTTA+GGG | + | chr7_3:68097335-68097354 | None:intergenic | 25.0% |
! | AAAGAAAATTTGAAGGTCTT+AGG | + | chr7_3:68097336-68097355 | None:intergenic | 25.0% |
! | TTTGGCAAAAGAAAATTTGA+AGG | + | chr7_3:68097343-68097362 | None:intergenic | 25.0% |
! | TGTATAATGTATTGTTACGA+GGG | + | chr7_3:68097382-68097401 | None:intergenic | 25.0% |
! | ATGTATAATGTATTGTTACG+AGG | + | chr7_3:68097383-68097402 | None:intergenic | 25.0% |
! | AAGCCAAAATAATATTAGGA+AGG | + | chr7_3:68097622-68097641 | None:intergenic | 25.0% |
!!! | TGTTGATTTGAGAATAAGAA+GGG | + | chr7_3:68098352-68098371 | None:intergenic | 25.0% |
!!! | ATGTTGATTTGAGAATAAGA+AGG | + | chr7_3:68098353-68098372 | None:intergenic | 25.0% |
!!! | CATTTTGGTATTTGTTGTAA+TGG | + | chr7_3:68098484-68098503 | None:intergenic | 25.0% |
! | TGTTTATTCTACCAATATTC+TGG | - | chr7_3:68098713-68098732 | Msa1119260:five_prime_UTR | 25.0% |
! | TGTTCTAACAATAGATAGTA+TGG | - | chr7_3:68098742-68098761 | Msa1119260:intron | 25.0% |
!! | ATGAATCATTATTGATTGTG+TGG | - | chr7_3:68098785-68098804 | Msa1119260:intron | 25.0% |
!!! | TTCTCTATTTTGGTTTATTG+GGG | + | chr7_3:68098874-68098893 | None:intergenic | 25.0% |
!!! | CTTTCTCTATTTTGGTTTAT+TGG | + | chr7_3:68098876-68098895 | None:intergenic | 25.0% |
! | CAATAAACCAAAATAGAGAA+AGG | - | chr7_3:68098874-68098893 | Msa1119260:five_prime_UTR | 25.0% |
!! | TTGGTTCAAATTCTAGAAAA+AGG | - | chr7_3:68099122-68099141 | Msa1119260:five_prime_UTR | 25.0% |
!! | TTTGATGAATTCCATTGATT+GGG | + | chr7_3:68099172-68099191 | None:intergenic | 25.0% |
!! | TTTTGATGAATTCCATTGAT+TGG | + | chr7_3:68099173-68099192 | None:intergenic | 25.0% |
!! | TTATTTTCCAAATCATTTGG+AGG | - | chr7_3:68099220-68099239 | Msa1119260:five_prime_UTR | 25.0% |
TTGATTGATGTTGAATCAAG+CGG | + | chr7_3:68094417-68094436 | None:intergenic | 30.0% | |
TGCAGTTATTTACATCAATG+TGG | + | chr7_3:68094527-68094546 | None:intergenic | 30.0% | |
AGTTGCTTAACTTTAGCATT+AGG | - | chr7_3:68094602-68094621 | Msa1119260:three_prime_UTR | 30.0% | |
ATTCGTTGTAAAATCAGTGA+GGG | + | chr7_3:68094689-68094708 | None:intergenic | 30.0% | |
!! | ACTGATTTTACAACGAATGA+AGG | - | chr7_3:68094691-68094710 | Msa1119260:CDS | 30.0% |
!! | AATTTGTTGATTCTCATGTC+AGG | + | chr7_3:68094733-68094752 | None:intergenic | 30.0% |
ACATGAGAATCAACAAATTC+AGG | - | chr7_3:68094734-68094753 | Msa1119260:CDS | 30.0% | |
!! | TGTTTGTTTTTCAGAAGTTC+AGG | - | chr7_3:68094785-68094804 | Msa1119260:intron | 30.0% |
AGAAATGCATCTATAAAAGC+CGG | - | chr7_3:68094827-68094846 | Msa1119260:intron | 30.0% | |
!! | GTTTTGAACAAACAGTTTCT+CGG | + | chr7_3:68094926-68094945 | None:intergenic | 30.0% |
TGAAAATGAGAACCAAAACA+AGG | - | chr7_3:68095011-68095030 | Msa1119260:intron | 30.0% | |
AATTTGTCACTGAAAAACTC+CGG | - | chr7_3:68095061-68095080 | Msa1119260:intron | 30.0% | |
AATGAGAAAAATATTGGGCT+TGG | - | chr7_3:68095168-68095187 | Msa1119260:intron | 30.0% | |
TCTATCAAAGAAATACTCGT+AGG | + | chr7_3:68095249-68095268 | None:intergenic | 30.0% | |
!! | GGGAACAAAAAGTTTGTTTT+TGG | - | chr7_3:68095612-68095631 | Msa1119260:intron | 30.0% |
CATCAATCAACAAAAGAATG+AGG | + | chr7_3:68095797-68095816 | None:intergenic | 30.0% | |
GGAAAAATATAGAAAGGGTA+AGG | + | chr7_3:68095836-68095855 | None:intergenic | 30.0% | |
CGTTGAGGAAAAATATAGAA+AGG | + | chr7_3:68095842-68095861 | None:intergenic | 30.0% | |
! | TCTATATTTTTCCTCAACGA+AGG | - | chr7_3:68095843-68095862 | Msa1119260:intron | 30.0% |
AATAAAACATACCTTCGTTG+AGG | + | chr7_3:68095857-68095876 | None:intergenic | 30.0% | |
CTACAACAATTTAGAGAAAG+GGG | + | chr7_3:68095992-68096011 | None:intergenic | 30.0% | |
AGATGGAAATCTAAATGGTA+AGG | + | chr7_3:68096050-68096069 | None:intergenic | 30.0% | |
AGACAAGATGGAAATCTAAA+TGG | + | chr7_3:68096055-68096074 | None:intergenic | 30.0% | |
ATCATTCGTTAACAATTGTC+TGG | + | chr7_3:68096086-68096105 | None:intergenic | 30.0% | |
TGAAGATATTACTCAAAACG+TGG | - | chr7_3:68096149-68096168 | Msa1119260:intron | 30.0% | |
TCCATGATTAATTCACAACA+TGG | - | chr7_3:68096178-68096197 | Msa1119260:intron | 30.0% | |
TCCATGTTGTGAATTAATCA+TGG | + | chr7_3:68096182-68096201 | None:intergenic | 30.0% | |
ATTATGTTTAACTCTGGTGT+TGG | - | chr7_3:68096512-68096531 | Msa1119260:intron | 30.0% | |
CATTATCACAAAACTCTTCA+AGG | + | chr7_3:68096656-68096675 | None:intergenic | 30.0% | |
GATAAAAGAAATACCATTCC+AGG | + | chr7_3:68096815-68096834 | None:intergenic | 30.0% | |
! | GGTATTTCTTTTATCCACTA+AGG | - | chr7_3:68096820-68096839 | Msa1119260:intron | 30.0% |
TCAAAAATTGTATTGAGGGA+GGG | + | chr7_3:68097062-68097081 | None:intergenic | 30.0% | |
GGAACTCAAAAATTGTATTG+AGG | + | chr7_3:68097067-68097086 | None:intergenic | 30.0% | |
TAAAAAATCTCCCTCATTTG+GGG | + | chr7_3:68097089-68097108 | None:intergenic | 30.0% | |
TGGAAGAAATAGAAGACATT+GGG | + | chr7_3:68097148-68097167 | None:intergenic | 30.0% | |
ACTTATTCAATAGTGTGAAC+TGG | - | chr7_3:68097501-68097520 | Msa1119260:intron | 30.0% | |
! | CATGATTTTTGTCAATGTTG+AGG | - | chr7_3:68097550-68097569 | Msa1119260:intron | 30.0% |
! | AGGCCTTCCTAATATTATTT+TGG | - | chr7_3:68097616-68097635 | Msa1119260:intron | 30.0% |
! | ACAAATCCTTATTGATTGTG+TGG | - | chr7_3:68097653-68097672 | Msa1119260:intron | 30.0% |
! | TGTTACTTGCTCTTATTTGT+AGG | - | chr7_3:68097825-68097844 | Msa1119260:intron | 30.0% |
AAGACATCAATATTCCTTGA+CGG | + | chr7_3:68098061-68098080 | None:intergenic | 30.0% | |
TTCATCAGTTGAACCTAAAA+TGG | + | chr7_3:68098392-68098411 | None:intergenic | 30.0% | |
TCTTCTTCACTAGATGTTAT+TGG | + | chr7_3:68098460-68098479 | None:intergenic | 30.0% | |
TATCATTGGAGTAAGTTTCT+TGG | + | chr7_3:68098558-68098577 | None:intergenic | 30.0% | |
AAGAAACTTACTCCAATGAT+AGG | - | chr7_3:68098557-68098576 | Msa1119260:intron | 30.0% | |
GAACAATAACTCCAGAATAT+TGG | + | chr7_3:68098727-68098746 | None:intergenic | 30.0% | |
! | ATTCATTTTCTGATACTCTG+CGG | - | chr7_3:68098910-68098929 | Msa1119260:five_prime_UTR | 30.0% |
AGTCAATTTCAAATGGTACA+AGG | - | chr7_3:68099053-68099072 | Msa1119260:five_prime_UTR | 30.0% | |
GTCAATTTCAAATGGTACAA+GGG | - | chr7_3:68099054-68099073 | Msa1119260:five_prime_UTR | 30.0% | |
TCAATTTCAAATGGTACAAG+GGG | - | chr7_3:68099055-68099074 | Msa1119260:five_prime_UTR | 30.0% | |
ATTTGAACCAAATTCTGACA+TGG | + | chr7_3:68099113-68099132 | None:intergenic | 30.0% | |
TCAATAGTAGAAGAAACTGA+TGG | + | chr7_3:68099322-68099341 | None:intergenic | 30.0% | |
TGATTGATGTTGAATCAAGC+GGG | + | chr7_3:68094416-68094435 | None:intergenic | 35.0% | |
! | TTGGTGAGTTTGCTTTAACT+AGG | + | chr7_3:68094649-68094668 | None:intergenic | 35.0% |
AAAATCAGTGAGGGAAAAGT+GGG | + | chr7_3:68094680-68094699 | None:intergenic | 35.0% | |
TAAAATCAGTGAGGGAAAAG+TGG | + | chr7_3:68094681-68094700 | None:intergenic | 35.0% | |
CATTCGTTGTAAAATCAGTG+AGG | + | chr7_3:68094690-68094709 | None:intergenic | 35.0% | |
TCTCATGTCAGGATTTACAA+TGG | + | chr7_3:68094722-68094741 | None:intergenic | 35.0% | |
GAGAGCTACAAACTTTCTTA+GGG | + | chr7_3:68094948-68094967 | None:intergenic | 35.0% | |
TGAGAGCTACAAACTTTCTT+AGG | + | chr7_3:68094949-68094968 | None:intergenic | 35.0% | |
!! | TCTTCTTCATCACCTTGTTT+TGG | + | chr7_3:68095026-68095045 | None:intergenic | 35.0% |
GATGAAGAAGAAAGAAAACC+TGG | - | chr7_3:68095035-68095054 | Msa1119260:intron | 35.0% | |
TTTCAGTGACAAATTCATCC+AGG | + | chr7_3:68095056-68095075 | None:intergenic | 35.0% | |
AATCAACAAAAGAATGAGGC+TGG | + | chr7_3:68095793-68095812 | None:intergenic | 35.0% | |
TAGAAAGGGTAAGGAATGAA+GGG | + | chr7_3:68095827-68095846 | None:intergenic | 35.0% | |
ATAGAAAGGGTAAGGAATGA+AGG | + | chr7_3:68095828-68095847 | None:intergenic | 35.0% | |
TAGATGATCTTCATGTTTGG+TGG | - | chr7_3:68096301-68096320 | Msa1119260:intron | 35.0% | |
AGATGATCTTCATGTTTGGT+GGG | - | chr7_3:68096302-68096321 | Msa1119260:intron | 35.0% | |
! | TTGCTTGTTTCTTAGTTCAC+TGG | - | chr7_3:68096350-68096369 | Msa1119260:intron | 35.0% |
! | TTAGTTCACTGGCCAATTTT+GGG | - | chr7_3:68096361-68096380 | Msa1119260:intron | 35.0% |
AAATCATATGACATCAGCTG+CGG | - | chr7_3:68096578-68096597 | Msa1119260:intron | 35.0% | |
!! | TAAGGCTTTGTTTGAGAGTT+TGG | - | chr7_3:68096838-68096857 | Msa1119260:intron | 35.0% |
CTCAAAAATTGTATTGAGGG+AGG | + | chr7_3:68097063-68097082 | None:intergenic | 35.0% | |
AAAAAATCTCCCTCATTTGG+GGG | + | chr7_3:68097088-68097107 | None:intergenic | 35.0% | |
AAGAAATAGAAGACATTGGG+AGG | + | chr7_3:68097145-68097164 | None:intergenic | 35.0% | |
GTGGAAGAAATAGAAGACAT+TGG | + | chr7_3:68097149-68097168 | None:intergenic | 35.0% | |
AATATGGTAGGAAAAAAGGC+TGG | + | chr7_3:68097288-68097307 | None:intergenic | 35.0% | |
TGGGAATATGGTAGGAAAAA+AGG | + | chr7_3:68097292-68097311 | None:intergenic | 35.0% | |
AAATTTGAAGGTCTTAGGGT+AGG | + | chr7_3:68097331-68097350 | None:intergenic | 35.0% | |
! | TTTCTTTTGCCAAAACATGC+AGG | - | chr7_3:68097349-68097368 | Msa1119260:intron | 35.0% |
TCATGCATGACAAAAAACAC+AGG | + | chr7_3:68097535-68097554 | None:intergenic | 35.0% | |
! | TGACTTGTGATCTAAGAACT+AGG | - | chr7_3:68097596-68097615 | Msa1119260:intron | 35.0% |
TCTAGACCACACAATCAATA+AGG | + | chr7_3:68097662-68097681 | None:intergenic | 35.0% | |
! | GATTGTGTGGTCTAGATTTT+TGG | - | chr7_3:68097666-68097685 | Msa1119260:intron | 35.0% |
!!! | GTGGTCTAGATTTTTGGTAT+AGG | - | chr7_3:68097672-68097691 | Msa1119260:intron | 35.0% |
GTAGGATCTTTCAAGCTAAT+AGG | + | chr7_3:68097887-68097906 | None:intergenic | 35.0% | |
! | ATTAGCTTGAAAGATCCTAC+TGG | - | chr7_3:68097887-68097906 | Msa1119260:intron | 35.0% |
! | TTAGCTTGAAAGATCCTACT+GGG | - | chr7_3:68097888-68097907 | Msa1119260:intron | 35.0% |
CAATAGTCAAGAACTGTTTG+AGG | - | chr7_3:68098003-68098022 | Msa1119260:intron | 35.0% | |
TTAGCGATTGTTGCATCAAT+CGG | - | chr7_3:68098262-68098281 | Msa1119260:intron | 35.0% | |
TGATTTGAGAATAAGAAGGG+TGG | + | chr7_3:68098349-68098368 | None:intergenic | 35.0% | |
GAACCTAAAATGGATGAAGA+AGG | + | chr7_3:68098382-68098401 | None:intergenic | 35.0% | |
! | GGACTTTCAGTTTGACATTT+TGG | + | chr7_3:68098499-68098518 | None:intergenic | 35.0% |
AAACTTACTCCAATGATAGG+TGG | - | chr7_3:68098560-68098579 | Msa1119260:intron | 35.0% | |
! | CTGATGACCTTTCTCTATTT+TGG | + | chr7_3:68098884-68098903 | None:intergenic | 35.0% |
! | GCAGAGTATCAGAAAATGAA+TGG | + | chr7_3:68098911-68098930 | None:intergenic | 35.0% |
TTTCCAAATCATTTGGAGGA+TGG | - | chr7_3:68099224-68099243 | Msa1119260:five_prime_UTR | 35.0% | |
GGAAAAGTGGGTCATAAGTT+TGG | + | chr7_3:68094668-68094687 | None:intergenic | 40.0% | |
ATGTTGTTGCTCTAACGTTG+TGG | - | chr7_3:68095641-68095660 | Msa1119260:intron | 40.0% | |
TAACGTTGTGGAGATAAGGA+AGG | - | chr7_3:68095653-68095672 | Msa1119260:intron | 40.0% | |
AACGTTGTGGAGATAAGGAA+GGG | - | chr7_3:68095654-68095673 | Msa1119260:intron | 40.0% | |
AGAAAGGGTAAGGAATGAAG+GGG | + | chr7_3:68095826-68095845 | None:intergenic | 40.0% | |
CTGGAAAACAACAGACAAGA+TGG | + | chr7_3:68096067-68096086 | None:intergenic | 40.0% | |
! | GATGATCTTCATGTTTGGTG+GGG | - | chr7_3:68096303-68096322 | Msa1119260:intron | 40.0% |
! | CTTAGTTCACTGGCCAATTT+TGG | - | chr7_3:68096360-68096379 | Msa1119260:intron | 40.0% |
! | ATGTTTAACTCTGGTGTTGG+TGG | - | chr7_3:68096515-68096534 | Msa1119260:intron | 40.0% |
!! | GTTGGTGGACTAATTGTCAA+AGG | - | chr7_3:68096530-68096549 | Msa1119260:intron | 40.0% |
ATTGTCAAAGGCCTCAAAGA+TGG | - | chr7_3:68096542-68096561 | Msa1119260:intron | 40.0% | |
! | TGTCATATGATTTTCCGCCT+TGG | + | chr7_3:68096571-68096590 | None:intergenic | 40.0% |
ACTCTCAAACAAAGCCTTAG+TGG | + | chr7_3:68096837-68096856 | None:intergenic | 40.0% | |
!! | GCTTTGTTTGAGAGTTTGGA+GGG | - | chr7_3:68096842-68096861 | Msa1119260:intron | 40.0% |
! | CTTTGTTTGAGAGTTTGGAG+GGG | - | chr7_3:68096843-68096862 | Msa1119260:intron | 40.0% |
! | TTGTATTGAGGGAGGGTTTT+GGG | + | chr7_3:68097055-68097074 | None:intergenic | 40.0% |
! | ATTGTATTGAGGGAGGGTTT+TGG | + | chr7_3:68097056-68097075 | None:intergenic | 40.0% |
!!! | TTTTTGAGTTCCCCCAAATG+AGG | - | chr7_3:68097075-68097094 | Msa1119260:intron | 40.0% |
!!! | TTTTGAGTTCCCCCAAATGA+GGG | - | chr7_3:68097076-68097095 | Msa1119260:intron | 40.0% |
! | GAGGGTTTTGCAAAAAAGGA+AGG | + | chr7_3:68097177-68097196 | None:intergenic | 40.0% |
!! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr7_3:68097209-68097228 | None:intergenic | 40.0% |
TTGCCAACACATAGGACATT+GGG | + | chr7_3:68097864-68097883 | None:intergenic | 40.0% | |
CTAATAGGTTGCCAACACAT+AGG | + | chr7_3:68097872-68097891 | None:intergenic | 40.0% | |
AAATTCATGACCAACCCAGT+AGG | + | chr7_3:68097905-68097924 | None:intergenic | 40.0% | |
CAGTAGAACAAGAGAGAAAG+TGG | - | chr7_3:68098026-68098045 | Msa1119260:intron | 40.0% | |
TAGAACAAGAGAGAAAGTGG+AGG | - | chr7_3:68098029-68098048 | Msa1119260:intron | 40.0% | |
AGAACAAGAGAGAAAGTGGA+GGG | - | chr7_3:68098030-68098049 | Msa1119260:intron | 40.0% | |
ATCCAAAACCTCCAAGAGTA+GGG | + | chr7_3:68098090-68098109 | None:intergenic | 40.0% | |
AATCCAAAACCTCCAAGAGT+AGG | + | chr7_3:68098091-68098110 | None:intergenic | 40.0% | |
TTTCGTTCAACAGCTACACA+TGG | - | chr7_3:68098198-68098217 | Msa1119260:five_prime_UTR | 40.0% | |
TTCGTTCAACAGCTACACAT+GGG | - | chr7_3:68098199-68098218 | Msa1119260:five_prime_UTR | 40.0% | |
! | GCACCTTCTTCATCCATTTT+AGG | - | chr7_3:68098376-68098395 | Msa1119260:intron | 40.0% |
GGTTCATAACCACCTATCAT+TGG | + | chr7_3:68098572-68098591 | None:intergenic | 40.0% | |
CATTGACACTGCATTGAGTT+TGG | + | chr7_3:68098937-68098956 | None:intergenic | 40.0% | |
AACTCAATGCAGTGTCAATG+AGG | - | chr7_3:68098937-68098956 | Msa1119260:five_prime_UTR | 40.0% | |
TTTCAAATGGTACAAGGGGT+TGG | - | chr7_3:68099059-68099078 | Msa1119260:five_prime_UTR | 40.0% | |
AGTTCGACCATGTCAGAATT+TGG | - | chr7_3:68099103-68099122 | Msa1119260:five_prime_UTR | 40.0% | |
GGGATGCACTAGCAATTATA+GGG | + | chr7_3:68099152-68099171 | None:intergenic | 40.0% | |
TGGGATGCACTAGCAATTAT+AGG | + | chr7_3:68099153-68099172 | None:intergenic | 40.0% | |
GAACCATCCTCCAAATGATT+TGG | + | chr7_3:68099230-68099249 | None:intergenic | 40.0% | |
AAACAGTTTCTCGGAATCGC+CGG | + | chr7_3:68094917-68094936 | None:intergenic | 45.0% | |
TTGTCACTGAAAAACTCCGG+CGG | - | chr7_3:68095064-68095083 | Msa1119260:intron | 45.0% | |
GATTAACTCAACTACTCGCC+CGG | + | chr7_3:68095096-68095115 | None:intergenic | 45.0% | |
GCTCTAACGTTGTGGAGATA+AGG | - | chr7_3:68095649-68095668 | Msa1119260:intron | 45.0% | |
GGAGGAAGGAGGATTTATCA+AGG | - | chr7_3:68095675-68095694 | Msa1119260:intron | 45.0% | |
CTCAAAGATGGAAACCAAGG+CGG | - | chr7_3:68096554-68096573 | Msa1119260:intron | 45.0% | |
!! | GGCTTTGTTTGAGAGTTTGG+AGG | - | chr7_3:68096841-68096860 | Msa1119260:intron | 45.0% |
TTTGAGAGTTTGGAGGGGAA+GGG | - | chr7_3:68096848-68096867 | Msa1119260:intron | 45.0% | |
! | TGTATTGAGGGAGGGTTTTG+GGG | + | chr7_3:68097054-68097073 | None:intergenic | 45.0% |
TAGAAGACATTGGGAGGAGA+GGG | + | chr7_3:68097139-68097158 | None:intergenic | 45.0% | |
ATAGAAGACATTGGGAGGAG+AGG | + | chr7_3:68097140-68097159 | None:intergenic | 45.0% | |
GCAAAAAAGGAAGGAGCAAG+TGG | + | chr7_3:68097168-68097187 | None:intergenic | 45.0% | |
! | AGGGGAGGGTTTTGCAAAAA+AGG | + | chr7_3:68097181-68097200 | None:intergenic | 45.0% |
! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr7_3:68097204-68097223 | None:intergenic | 45.0% |
!! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr7_3:68097205-68097224 | None:intergenic | 45.0% |
! | TAGCTTGGTGGGAATATGGT+AGG | + | chr7_3:68097300-68097319 | None:intergenic | 45.0% |
!! | AGGTTTTGCACTAGCTTGGT+GGG | + | chr7_3:68097311-68097330 | None:intergenic | 45.0% |
!! | TAGGTTTTGCACTAGCTTGG+TGG | + | chr7_3:68097312-68097331 | None:intergenic | 45.0% |
! | GGATTGAGACCTGCATGTTT+TGG | + | chr7_3:68097361-68097380 | None:intergenic | 45.0% |
AGGTCATTGTTCACTACCGT+TGG | - | chr7_3:68097570-68097589 | Msa1119260:intron | 45.0% | |
AGATCACAAGTCACGACCAA+CGG | + | chr7_3:68097589-68097608 | None:intergenic | 45.0% | |
GTTGCCAACACATAGGACAT+TGG | + | chr7_3:68097865-68097884 | None:intergenic | 45.0% | |
CTTGAAAGATCCTACTGGGT+TGG | - | chr7_3:68097892-68097911 | Msa1119260:intron | 45.0% | |
ATCGGAAGAACACACCATGT+TGG | - | chr7_3:68098280-68098299 | Msa1119260:intron | 45.0% | |
AACACACCATGTTGGTCGAA+GGG | - | chr7_3:68098288-68098307 | Msa1119260:intron | 45.0% | |
GGACAACAAATTCGACCATC+TGG | - | chr7_3:68098313-68098332 | Msa1119260:intron | 45.0% | |
CAAATTCGACCATCTGGTCA+TGG | - | chr7_3:68098319-68098338 | Msa1119260:intron | 45.0% | |
ACTGAAAGTCCCTCAACTTC+TGG | - | chr7_3:68098508-68098527 | Msa1119260:intron | 45.0% | |
ACGGTTGATCCAGAAGTTGA+GGG | + | chr7_3:68098520-68098539 | None:intergenic | 45.0% | |
AACTTCTGGATCAACCGTCA+CGG | - | chr7_3:68098522-68098541 | Msa1119260:intron | 45.0% | |
TCAACCGTCACGGAAACAAA+TGG | - | chr7_3:68098532-68098551 | Msa1119260:intron | 45.0% | |
TTGGCCATTTGTTTCCGTGA+CGG | + | chr7_3:68098539-68098558 | None:intergenic | 45.0% | |
!! | TAGATGTGGTTCTAGCACAG+AGG | + | chr7_3:68098620-68098639 | None:intergenic | 45.0% |
AAATGGTACAAGGGGTTGGA+AGG | - | chr7_3:68099063-68099082 | Msa1119260:five_prime_UTR | 45.0% | |
TGCTAGTGCATCCCAATCAA+TGG | - | chr7_3:68099158-68099177 | Msa1119260:five_prime_UTR | 45.0% | |
TCGGTTGATTGCTTCTATCG+TGG | + | chr7_3:68099252-68099271 | None:intergenic | 45.0% | |
!! | CACTGGCTTCAACGCAATTT+CGG | + | chr7_3:68099271-68099290 | None:intergenic | 45.0% |
! | ATAAAAGCCGGTTTACGCGC+TGG | - | chr7_3:68094839-68094858 | Msa1119260:intron | 50.0% |
! | GGACGCAGAAGAAGTATGGT+AGG | + | chr7_3:68095228-68095247 | None:intergenic | 50.0% |
CGTAGGACGCAGAAGAAGTA+TGG | + | chr7_3:68095232-68095251 | None:intergenic | 50.0% | |
GTTGTGGAGATAAGGAAGGG+AGG | - | chr7_3:68095657-68095676 | Msa1119260:intron | 50.0% | |
TGGAGATAAGGAAGGGAGGA+AGG | - | chr7_3:68095661-68095680 | Msa1119260:intron | 50.0% | |
AGATAAGGAAGGGAGGAAGG+AGG | - | chr7_3:68095664-68095683 | Msa1119260:intron | 50.0% | |
GGCCTCAAAGATGGAAACCA+AGG | - | chr7_3:68096551-68096570 | Msa1119260:intron | 50.0% | |
CGCCTTGGTTTCCATCTTTG+AGG | + | chr7_3:68096556-68096575 | None:intergenic | 50.0% | |
! | TCAGCTGCGGCTTTTGTTGA+AGG | - | chr7_3:68096591-68096610 | Msa1119260:intron | 50.0% |
TGTTATAGACCACCGCTTGC+CGG | - | chr7_3:68096766-68096785 | Msa1119260:intron | 50.0% | |
ATTGCAGGTGAAACTCGTGC+CGG | + | chr7_3:68096788-68096807 | None:intergenic | 50.0% | |
GTTTGAGAGTTTGGAGGGGA+AGG | - | chr7_3:68096847-68096866 | Msa1119260:intron | 50.0% | |
!!! | TATTGAGGGAGGGTTTTGGG+GGG | + | chr7_3:68097052-68097071 | None:intergenic | 50.0% |
!! | GTATTGAGGGAGGGTTTTGG+GGG | + | chr7_3:68097053-68097072 | None:intergenic | 50.0% |
!! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr7_3:68097206-68097225 | None:intergenic | 50.0% |
! | GCACTAGCTTGGTGGGAATA+TGG | + | chr7_3:68097304-68097323 | None:intergenic | 50.0% |
! | GGGTAGGTTTTGCACTAGCT+TGG | + | chr7_3:68097315-68097334 | None:intergenic | 50.0% |
GCTCCCAATGTCCTATGTGT+TGG | - | chr7_3:68097858-68097877 | Msa1119260:intron | 50.0% | |
GTCTTTCATCGCCCTACTCT+TGG | - | chr7_3:68098076-68098095 | Msa1119260:intron | 50.0% | |
TTTCATCGCCCTACTCTTGG+AGG | - | chr7_3:68098079-68098098 | Msa1119260:intron | 50.0% | |
GAACACACCATGTTGGTCGA+AGG | - | chr7_3:68098287-68098306 | Msa1119260:intron | 50.0% | |
GACGGTTGATCCAGAAGTTG+AGG | + | chr7_3:68098521-68098540 | None:intergenic | 50.0% | |
!! | ATGTGGTTCTAGCACAGAGG+AGG | + | chr7_3:68098617-68098636 | None:intergenic | 50.0% |
GACAGCATTTGCAGTGTCGC+CGG | - | chr7_3:68094895-68094914 | Msa1119260:CDS | 55.0% | |
AAAACTCCGGCGGCGATTTC+CGG | - | chr7_3:68095074-68095093 | Msa1119260:intron | 55.0% | |
! | GCTGCGGCTTTTGTTGAAGG+CGG | - | chr7_3:68096594-68096613 | Msa1119260:intron | 55.0% |
GTTTCACCTGCAATGCGTCC+TGG | - | chr7_3:68096794-68096813 | Msa1119260:intron | 55.0% | |
ACCTGCAATGCGTCCTGGAA+TGG | - | chr7_3:68096799-68096818 | Msa1119260:intron | 55.0% | |
ACCATTCCAGGACGCATTGC+AGG | + | chr7_3:68096803-68096822 | None:intergenic | 55.0% | |
AGAGTTTGGAGGGGAAGGGA+GGG | - | chr7_3:68096852-68096871 | Msa1119260:intron | 55.0% | |
!!! | GGGTTTTGGGGGGTTATGGA+GGG | + | chr7_3:68097042-68097061 | None:intergenic | 55.0% |
!!! | AGGGTTTTGGGGGGTTATGG+AGG | + | chr7_3:68097043-68097062 | None:intergenic | 55.0% |
ACATTGGGAGGAGAGGGCTT+TGG | + | chr7_3:68097133-68097152 | None:intergenic | 55.0% | |
TTTGGGAGTTTGGAGGGGAG+GGG | + | chr7_3:68097199-68097218 | None:intergenic | 55.0% | |
GTTTGGGAGTTTGGAGGGGA+GGG | + | chr7_3:68097200-68097219 | None:intergenic | 55.0% | |
TGTTTGGGAGTTTGGAGGGG+AGG | + | chr7_3:68097201-68097220 | None:intergenic | 55.0% | |
AGTGGAGGGTTACTCCGTCA+AGG | - | chr7_3:68098044-68098063 | Msa1119260:intron | 55.0% | |
! | CGCCCTACTCTTGGAGGTTT+TGG | - | chr7_3:68098085-68098104 | Msa1119260:intron | 55.0% |
CAGCTACACATGGGCGTCAA+TGG | - | chr7_3:68098208-68098227 | Msa1119260:five_prime_UTR | 55.0% | |
CACCATGTTGGTCGAAGGGA+AGG | - | chr7_3:68098292-68098311 | Msa1119260:intron | 55.0% | |
GTCCTTCCCTTCGACCAACA+TGG | + | chr7_3:68098297-68098316 | None:intergenic | 55.0% | |
GGTGGTTGACCATGACCAGA+TGG | + | chr7_3:68098331-68098350 | None:intergenic | 55.0% | |
GTACAAGGGGTTGGAAGGAG+AGG | - | chr7_3:68099068-68099087 | Msa1119260:five_prime_UTR | 55.0% | |
AAACTCCGGCGGCGATTTCC+GGG | - | chr7_3:68095075-68095094 | Msa1119260:intron | 60.0% | |
! | GTGAAACTCGTGCCGGCAAG+CGG | + | chr7_3:68096781-68096800 | None:intergenic | 60.0% |
GAGAGTTTGGAGGGGAAGGG+AGG | - | chr7_3:68096851-68096870 | Msa1119260:intron | 60.0% | |
GAGTTTGGAGGGGAAGGGAG+GGG | - | chr7_3:68096853-68096872 | Msa1119260:intron | 60.0% | |
!!! | GGGAGGGTTTTGGGGGGTTA+TGG | + | chr7_3:68097046-68097065 | None:intergenic | 60.0% |
! | TTGGGAGGAGAGGGCTTTGG+AGG | + | chr7_3:68097130-68097149 | None:intergenic | 60.0% |
CGCGTGATGTGTCTTCGCAC+TGG | + | chr7_3:68099288-68099307 | None:intergenic | 60.0% | |
TCCTGCGCCAGCGCGTAAAC+CGG | + | chr7_3:68094849-68094868 | None:intergenic | 65.0% | |
! | AAACTCGTGCCGGCAAGCGG+TGG | + | chr7_3:68096778-68096797 | None:intergenic | 65.0% |
TTTGGAGGGGAAGGGAGGGG+AGG | - | chr7_3:68096856-68096875 | Msa1119260:intron | 65.0% | |
TTGGAGGGGAAGGGAGGGGA+GGG | - | chr7_3:68096857-68096876 | Msa1119260:intron | 65.0% | |
GGAAGGGAGGGGAGGGCTTT+GGG | - | chr7_3:68096864-68096883 | Msa1119260:intron | 65.0% | |
GAAGGGAGGGGAGGGCTTTG+GGG | - | chr7_3:68096865-68096884 | Msa1119260:intron | 65.0% | |
! | AAGGGAGGGGAGGGCTTTGG+GGG | - | chr7_3:68096866-68096885 | Msa1119260:intron | 65.0% |
GGAGTTTGGAGGGGAGGGGA+GGG | + | chr7_3:68097195-68097214 | None:intergenic | 65.0% | |
! | GGTTTACGCGCTGGCGCAGG+AGG | - | chr7_3:68094848-68094867 | Msa1119260:CDS | 70.0% |
! | TTACGCGCTGGCGCAGGAGG+AGG | - | chr7_3:68094851-68094870 | Msa1119260:CDS | 70.0% |
! | TACGCGCTGGCGCAGGAGGA+GGG | - | chr7_3:68094852-68094871 | Msa1119260:CDS | 70.0% |
ACTCGCCCGGAAATCGCCGC+CGG | + | chr7_3:68095083-68095102 | None:intergenic | 70.0% | |
GGGAAGGGAGGGGAGGGCTT+TGG | - | chr7_3:68096863-68096882 | Msa1119260:intron | 70.0% | |
!! | AGGGAGGGGAGGGCTTTGGG+GGG | - | chr7_3:68096867-68096886 | Msa1119260:intron | 70.0% |
!! | AGGGGAGGGCTTTGGGGGGT+TGG | - | chr7_3:68096871-68096890 | Msa1119260:intron | 70.0% |
GGGAGTTTGGAGGGGAGGGG+AGG | + | chr7_3:68097196-68097215 | None:intergenic | 70.0% | |
! | GCCGGTTTACGCGCTGGCGC+AGG | - | chr7_3:68094845-68094864 | Msa1119260:intron | 75.0% |
! | ACGCGCTGGCGCAGGAGGAG+GGG | - | chr7_3:68094853-68094872 | Msa1119260:CDS | 75.0% |
!! | CGCGCTGGCGCAGGAGGAGG+GGG | - | chr7_3:68094854-68094873 | Msa1119260:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 68094314 | 68099491 | 68094314 | ID=Msa1119260;Name=Msa1119260 |
chr7_3 | mRNA | 68094314 | 68099491 | 68094314 | ID=Msa1119260-mRNA-1;Parent=Msa1119260;Name=Msa1119260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=919|1|1|1|0.6|0.54|11|344|327 |
chr7_3 | exon | 68094314 | 68094760 | 68094314 | ID=Msa1119260-mRNA-1:exon:17011;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68094847 | 68094954 | 68094847 | ID=Msa1119260-mRNA-1:exon:17010;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68095227 | 68095594 | 68095227 | ID=Msa1119260-mRNA-1:exon:17009;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68095688 | 68095796 | 68095688 | ID=Msa1119260-mRNA-1:exon:17008;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68095896 | 68095958 | 68095896 | ID=Msa1119260-mRNA-1:exon:17007;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68096985 | 68097031 | 68096985 | ID=Msa1119260-mRNA-1:exon:17006;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68097119 | 68097253 | 68097119 | ID=Msa1119260-mRNA-1:exon:17005;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68097941 | 68098011 | 68097941 | ID=Msa1119260-mRNA-1:exon:17004;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68098109 | 68098258 | 68098109 | ID=Msa1119260-mRNA-1:exon:17003;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68098664 | 68098741 | 68098664 | ID=Msa1119260-mRNA-1:exon:17002;Parent=Msa1119260-mRNA-1 |
chr7_3 | exon | 68098821 | 68099491 | 68098821 | ID=Msa1119260-mRNA-1:exon:17001;Parent=Msa1119260-mRNA-1 |
chr7_3 | five_prime_UTR | 68098821 | 68099491 | 68098821 | ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1 |
chr7_3 | five_prime_UTR | 68098664 | 68098741 | 68098664 | ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1 |
chr7_3 | five_prime_UTR | 68098109 | 68098258 | 68098109 | ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1 |
chr7_3 | five_prime_UTR | 68097992 | 68098011 | 68097992 | ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68097941 | 68097991 | 68097941 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68097119 | 68097253 | 68097119 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68096985 | 68097031 | 68096985 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68095896 | 68095958 | 68095896 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68095688 | 68095796 | 68095688 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68095227 | 68095594 | 68095227 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68094847 | 68094954 | 68094847 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | CDS | 68094658 | 68094760 | 68094658 | ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1 |
chr7_3 | three_prime_UTR | 68094314 | 68094657 | 68094314 | ID=Msa1119260-mRNA-1:three_prime_utr;Parent=Msa1119260-mRNA-1 |
Gene Sequence |
Protein sequence |