AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119260 MtrunA17_Chr7g0267851 88.685 327 14 1 1 327 1 304 0.0 585
Msa1119260 MtrunA17_Chr2g0322261 55.769 312 120 4 22 326 11 311 2.96e-110 325
Msa1119260 MtrunA17_Chr2g0287991 36.170 282 144 8 45 320 35 286 6.94e-44 154
Msa1119260 MtrunA17_Chr7g0248061 54.348 46 21 0 45 90 137 182 3.08e-12 64.3
Msa1119260 MtrunA17_Chr8g0387191 54.348 46 21 0 45 90 153 198 1.62e-11 62.8
Msa1119260 MtrunA17_Chr7g0220221 41.667 60 33 1 29 88 160 217 1.93e-11 63.2
Msa1119260 MtrunA17_Chr8g0348651 52.174 46 22 0 45 90 137 182 6.82e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119260 AT5G22000.2 50.641 312 131 4 23 326 8 304 6.11e-97 291
Msa1119260 AT5G22000.3 50.641 312 131 4 23 326 8 304 6.38e-97 291
Msa1119260 AT5G22000.1 50.641 312 131 4 23 326 8 304 6.38e-97 291
Msa1119260 AT5G22000.4 43.548 248 117 4 87 326 1 233 7.79e-51 171
Msa1119260 AT4G14220.1 31.944 288 171 6 33 320 31 293 1.82e-31 121
Msa1119260 AT4G00335.2 46.154 52 28 0 45 96 136 187 6.55e-11 61.2
Msa1119260 AT4G00335.1 46.154 52 28 0 45 96 136 187 6.55e-11 61.2
Msa1119260 AT4G00335.3 46.154 52 28 0 45 96 136 187 6.55e-11 61.2

Find 140 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATGACCTTTCTCTATTT+TGG 0.114320 7_3:+68094902 None:intergenic
CGCCCTACTCTTGGAGGTTT+TGG 0.127339 7_3:-68095698 Msa1119260:CDS
TGAGAGCTACAAACTTTCTT+AGG 0.150952 7_3:+68098837 None:intergenic
TTCATCAGTTGAACCTAAAA+TGG 0.166434 7_3:+68095394 None:intergenic
GGACTTTCAGTTTGACATTT+TGG 0.167995 7_3:+68095287 None:intergenic
TTCTATTCTATTTGAATTAC+TGG 0.186967 7_3:+68099426 None:intergenic
AAAACTCCGGCGGCGATTTC+CGG 0.196054 7_3:-68098709 Msa1119260:five_prime_UTR
ATCAATGTGGATAAAGATTA+TGG 0.213482 7_3:+68099272 None:intergenic
TTATGTTAACATCTTTCTTT+AGG 0.242283 7_3:-68094425 Msa1119260:three_prime_UTR
AGTTCGACCATGTCAGAATT+TGG 0.244465 7_3:-68094680 Msa1119260:CDS
TGGGATGCACTAGCAATTAT+AGG 0.270887 7_3:+68094633 None:intergenic
CATTGACACTGCATTGAGTT+TGG 0.273325 7_3:+68094849 None:intergenic
GTCTATATATATAGATTAAA+AGG 0.274096 7_3:-68098197 Msa1119260:five_prime_UTR
TCTTCTTCACTAGATGTTAT+TGG 0.283783 7_3:+68095326 None:intergenic
ACTGAAAGTCCCTCAACTTC+TGG 0.284506 7_3:-68095275 Msa1119260:CDS
TATCATTGGAGTAAGTTTCT+TGG 0.300253 7_3:+68095228 None:intergenic
TTGGTTCAAATTCTAGAAAA+AGG 0.303718 7_3:-68094661 Msa1119260:CDS
AGTTGCTTAACTTTAGCATT+AGG 0.307986 7_3:-68099181 Msa1119260:five_prime_UTR
CGCCTTGGTTTCCATCTTTG+AGG 0.321971 7_3:+68097230 None:intergenic
GTAGGATCTTTCAAGCTAAT+AGG 0.330819 7_3:+68095899 None:intergenic
CACTGGCTTCAACGCAATTT+CGG 0.341340 7_3:+68094515 None:intergenic
AAACTCCGGCGGCGATTTCC+GGG 0.345406 7_3:-68098708 Msa1119260:five_prime_UTR
GAACCATCCTCCAAATGATT+TGG 0.345962 7_3:+68094556 None:intergenic
GTCTTTCATCGCCCTACTCT+TGG 0.346696 7_3:-68095707 Msa1119260:CDS
ACATGAGAATCAACAAATTC+AGG 0.356616 7_3:-68099049 Msa1119260:five_prime_UTR
ACCATTCCAGGACGCATTGC+AGG 0.362971 7_3:+68096983 None:intergenic
TGGAGATAAGGAAGGGAGGA+AGG 0.378488 7_3:-68098122 Msa1119260:five_prime_UTR
TGTTATAGACCACCGCTTGC+CGG 0.387393 7_3:-68097017 Msa1119260:intron
GGGATGCACTAGCAATTATA+GGG 0.396776 7_3:+68094634 None:intergenic
GGAAAAGTGGGTCATAAGTT+TGG 0.399048 7_3:+68099118 None:intergenic
TTGATCTATTTATGATTATG+AGG 0.400152 7_3:+68099456 None:intergenic
CGCGCTGGCGCAGGAGGAGG+GGG 0.407883 7_3:-68098929 Msa1119260:five_prime_UTR
GATAAAAGAAATACCATTCC+AGG 0.418034 7_3:+68096971 None:intergenic
GATGTATTTAGCTTACAATA+AGG 0.427178 7_3:+68099324 None:intergenic
AAAGTGAATATTACAGTTGA+AGG 0.437206 7_3:+68097105 None:intergenic
CAGCTACACATGGGCGTCAA+TGG 0.439815 7_3:-68095575 Msa1119260:CDS
AATTTGTTGATTCTCATGTC+AGG 0.439839 7_3:+68099053 None:intergenic
TTTGATGAATTCCATTGATT+GGG 0.443007 7_3:+68094614 None:intergenic
TAAAATCAGTGAGGGAAAAG+TGG 0.445191 7_3:+68099105 None:intergenic
CATTATCACAAAACTCTTCA+AGG 0.448344 7_3:+68097130 None:intergenic
GAGAGCTACAAACTTTCTTA+GGG 0.449124 7_3:+68098838 None:intergenic
GGTTCATAACCACCTATCAT+TGG 0.460752 7_3:+68095214 None:intergenic
TTTCAAATGGTACAAGGGGT+TGG 0.464012 7_3:-68094724 Msa1119260:CDS
AAGAAACTTACTCCAATGAT+AGG 0.464477 7_3:-68095226 Msa1119260:intron
TATTTATGATTATGAGGATG+TGG 0.464728 7_3:+68099462 None:intergenic
TTAGCGATTGTTGCATCAAT+CGG 0.469150 7_3:-68095521 Msa1119260:CDS
GGACAACAAATTCGACCATC+TGG 0.470051 7_3:-68095470 Msa1119260:CDS
TTTCATCGCCCTACTCTTGG+AGG 0.471662 7_3:-68095704 Msa1119260:CDS
ACGCGCTGGCGCAGGAGGAG+GGG 0.474195 7_3:-68098930 Msa1119260:five_prime_UTR
TGCTAGTGCATCCCAATCAA+TGG 0.475980 7_3:-68094625 Msa1119260:three_prime_UTR
CAGTAGAACAAGAGAGAAAG+TGG 0.477805 7_3:-68095757 Msa1119260:CDS
ATTAGCTTGAAAGATCCTAC+TGG 0.480526 7_3:-68095896 Msa1119260:CDS
ATAGAAAGGGTAAGGAATGA+AGG 0.481753 7_3:+68097958 None:intergenic
GTTTCACCTGCAATGCGTCC+TGG 0.489130 7_3:-68096989 Msa1119260:CDS
TTGCCAACACATAGGACATT+GGG 0.490978 7_3:+68095922 None:intergenic
ATTGTCAAAGGCCTCAAAGA+TGG 0.491290 7_3:-68097241 Msa1119260:intron
GCAGAGTATCAGAAAATGAA+TGG 0.491541 7_3:+68094875 None:intergenic
ATATATAGACTGTATTCTGT+TGG 0.495203 7_3:+68098210 None:intergenic
TATAAAGAGTCAATTTCAAA+TGG 0.499844 7_3:-68094737 Msa1119260:CDS
ACCTGCAATGCGTCCTGGAA+TGG 0.503145 7_3:-68096984 Msa1119260:intron
CGCGTGATGTGTCTTCGCAC+TGG 0.505800 7_3:+68094498 None:intergenic
GCTCTAACGTTGTGGAGATA+AGG 0.508332 7_3:-68098134 Msa1119260:five_prime_UTR
AGATAAGGAAGGGAGGAAGG+AGG 0.516656 7_3:-68098119 Msa1119260:five_prime_UTR
GTACAAGGGGTTGGAAGGAG+AGG 0.516930 7_3:-68094715 Msa1119260:CDS
TTGGCCATTTGTTTCCGTGA+CGG 0.517363 7_3:+68095247 None:intergenic
TTTCCAAATCATTTGGAGGA+TGG 0.517475 7_3:-68094559 Msa1119260:three_prime_UTR
GACAGCATTTGCAGTGTCGC+CGG 0.519015 7_3:-68098888 Msa1119260:five_prime_UTR
TCAACCGTCACGGAAACAAA+TGG 0.523851 7_3:-68095251 Msa1119260:CDS
TTGGTGAGTTTGCTTTAACT+AGG 0.526510 7_3:+68099137 None:intergenic
GTCAATTTCAAATGGTACAA+GGG 0.526606 7_3:-68094729 Msa1119260:CDS
CAATAGTCAAGAACTGTTTG+AGG 0.527587 7_3:-68095780 Msa1119260:intron
TGTTGATTTGAGAATAAGAA+GGG 0.534896 7_3:+68095434 None:intergenic
AAATATCTATATGAAAGAAA+AGG 0.535628 7_3:-68094332 Msa1119260:three_prime_UTR
AAGACATCAATATTCCTTGA+CGG 0.535688 7_3:+68095725 None:intergenic
AAATGGTACAAGGGGTTGGA+AGG 0.537898 7_3:-68094720 Msa1119260:CDS
GACGGTTGATCCAGAAGTTG+AGG 0.539227 7_3:+68095265 None:intergenic
ATCCAAAACCTCCAAGAGTA+GGG 0.541287 7_3:+68095696 None:intergenic
GATTAACTCAACTACTCGCC+CGG 0.541769 7_3:+68098690 None:intergenic
TCGGTTGATTGCTTCTATCG+TGG 0.544377 7_3:+68094534 None:intergenic
AAACTCGTGCCGGCAAGCGG+TGG 0.544467 7_3:+68097008 None:intergenic
CAATAAACCAAAATAGAGAA+AGG 0.545182 7_3:-68094909 Msa1119260:CDS
AAACAGTTTCTCGGAATCGC+CGG 0.545357 7_3:+68098869 None:intergenic
TATATATAGATTAAAAGGCA+AGG 0.548706 7_3:-68098192 Msa1119260:five_prime_UTR
AAAGTGAAAACAAAACAAGT+TGG 0.549391 7_3:+68098668 None:intergenic
GAACCTAAAATGGATGAAGA+AGG 0.550164 7_3:+68095404 None:intergenic
ATAAAAGCCGGTTTACGCGC+TGG 0.551760 7_3:-68098944 Msa1119260:five_prime_UTR
TAGAAAGGGTAAGGAATGAA+GGG 0.552848 7_3:+68097959 None:intergenic
AGAAATGCATCTATAAAAGC+CGG 0.552909 7_3:-68098956 Msa1119260:five_prime_UTR
GGTTTACGCGCTGGCGCAGG+AGG 0.553336 7_3:-68098935 Msa1119260:five_prime_UTR
ACTCGCCCGGAAATCGCCGC+CGG 0.556074 7_3:+68098703 None:intergenic
AGTCAATTTCAAATGGTACA+AGG 0.558268 7_3:-68094730 Msa1119260:CDS
CACCATGTTGGTCGAAGGGA+AGG 0.559069 7_3:-68095491 Msa1119260:CDS
GTCCTTCCCTTCGACCAACA+TGG 0.559958 7_3:+68095489 None:intergenic
AATCCAAAACCTCCAAGAGT+AGG 0.560258 7_3:+68095695 None:intergenic
GGAGGAAGGAGGATTTATCA+AGG 0.567181 7_3:-68098108 Msa1119260:intron
CATCAATCAACAAAAGAATG+AGG 0.570616 7_3:+68097989 None:intergenic
AAAATCAGTGAGGGAAAAGT+GGG 0.571193 7_3:+68099106 None:intergenic
GCTCCCAATGTCCTATGTGT+TGG 0.573320 7_3:-68095925 Msa1119260:CDS
TCTATTCTATTTGAATTACT+GGG 0.575184 7_3:+68099427 None:intergenic
TCAATTTCAAATGGTACAAG+GGG 0.576916 7_3:-68094728 Msa1119260:CDS
TCAATAGTAGAAGAAACTGA+TGG 0.577721 7_3:+68094464 None:intergenic
GAACACACCATGTTGGTCGA+AGG 0.578887 7_3:-68095496 Msa1119260:CDS
GTTGCCAACACATAGGACAT+TGG 0.587109 7_3:+68095921 None:intergenic
GGCCTCAAAGATGGAAACCA+AGG 0.587642 7_3:-68097232 Msa1119260:CDS
ATGTTGATTTGAGAATAAGA+AGG 0.590502 7_3:+68095433 None:intergenic
ACGGTTGATCCAGAAGTTGA+GGG 0.590950 7_3:+68095266 None:intergenic
GTGAAACTCGTGCCGGCAAG+CGG 0.593105 7_3:+68097005 None:intergenic
AATAAAACATACCTTCGTTG+AGG 0.594994 7_3:+68097929 None:intergenic
ATTCGTTGTAAAATCAGTGA+GGG 0.595357 7_3:+68099097 None:intergenic
ATATATAGATTAAAAGGCAA+GGG 0.595950 7_3:-68098191 Msa1119260:five_prime_UTR
TTTCGTTCAACAGCTACACA+TGG 0.598136 7_3:-68095585 Msa1119260:intron
AACACACCATGTTGGTCGAA+GGG 0.603686 7_3:-68095495 Msa1119260:CDS
AAAACAAACAAATTTGGTCA+AGG 0.603956 7_3:+68099011 None:intergenic
TAACGTTGTGGAGATAAGGA+AGG 0.604670 7_3:-68098130 Msa1119260:five_prime_UTR
GTTGTGGAGATAAGGAAGGG+AGG 0.609221 7_3:-68098126 Msa1119260:five_prime_UTR
TTAGCTTGAAAGATCCTACT+GGG 0.609832 7_3:-68095895 Msa1119260:intron
TGCAGTTATTTACATCAATG+TGG 0.610150 7_3:+68099259 None:intergenic
ATGTTGTTGCTCTAACGTTG+TGG 0.610848 7_3:-68098142 Msa1119260:five_prime_UTR
AACTCAATGCAGTGTCAATG+AGG 0.616102 7_3:-68094846 Msa1119260:intron
GGTGGTTGACCATGACCAGA+TGG 0.618290 7_3:+68095455 None:intergenic
AACGTTGTGGAGATAAGGAA+GGG 0.619860 7_3:-68098129 Msa1119260:five_prime_UTR
AACTTCTGGATCAACCGTCA+CGG 0.620578 7_3:-68095261 Msa1119260:CDS
TCTCATGTCAGGATTTACAA+TGG 0.621399 7_3:+68099064 None:intergenic
ATTTGAACCAAATTCTGACA+TGG 0.622289 7_3:+68094673 None:intergenic
TGATTGATGTTGAATCAAGC+GGG 0.626336 7_3:+68099370 None:intergenic
AGAACAAGAGAGAAAGTGGA+GGG 0.629551 7_3:-68095753 Msa1119260:CDS
TTCGTTCAACAGCTACACAT+GGG 0.632627 7_3:-68095584 Msa1119260:intron
CAAATTCGACCATCTGGTCA+TGG 0.633887 7_3:-68095464 Msa1119260:CDS
ATTGCAGGTGAAACTCGTGC+CGG 0.635125 7_3:+68096998 None:intergenic
TTGATTGATGTTGAATCAAG+CGG 0.637430 7_3:+68099369 None:intergenic
AGTGGAGGGTTACTCCGTCA+AGG 0.637839 7_3:-68095739 Msa1119260:CDS
CTAATAGGTTGCCAACACAT+AGG 0.640955 7_3:+68095914 None:intergenic
ATCGGAAGAACACACCATGT+TGG 0.642131 7_3:-68095503 Msa1119260:CDS
AAATTCATGACCAACCCAGT+AGG 0.663616 7_3:+68095881 None:intergenic
AAATCATATGACATCAGCTG+CGG 0.669781 7_3:-68097205 Msa1119260:CDS
TAGAACAAGAGAGAAAGTGG+AGG 0.671560 7_3:-68095754 Msa1119260:CDS
TGATTTGAGAATAAGAAGGG+TGG 0.676918 7_3:+68095437 None:intergenic
AGAAAGGGTAAGGAATGAAG+GGG 0.677639 7_3:+68097960 None:intergenic
CATTCGTTGTAAAATCAGTG+AGG 0.678142 7_3:+68099096 None:intergenic
CTCAAAGATGGAAACCAAGG+CGG 0.690040 7_3:-68097229 Msa1119260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACTTTTTTTTTTTTGA+AGG - chr7_3:68095347-68095366 Msa1119260:CDS 10.0%
!! AAAAAAAAAAAAATTATGCA+TGG + chr7_3:68095434-68095453 None:intergenic 10.0%
!!! TTTTACATTTAAATTTTATC+TGG - chr7_3:68095932-68095951 Msa1119260:CDS 10.0%
!!! TTTTAGGAAATTGATTTTAT+GGG + chr7_3:68094562-68094581 None:intergenic 15.0%
!!! TGAAAATTTTACATTTGAAT+AGG + chr7_3:68094977-68094996 None:intergenic 15.0%
!! TTCAAAATGAGAAAAATATT+GGG - chr7_3:68095163-68095182 Msa1119260:intron 15.0%
!!! CTTATTTAACATATTTTGAT+TGG - chr7_3:68095380-68095399 Msa1119260:CDS 15.0%
!! TACCAAAAAAAAAAAAAAAG+AGG - chr7_3:68095527-68095546 Msa1119260:CDS 15.0%
!!! AACCTCTTTTTTTTTTTTTT+TGG + chr7_3:68095532-68095551 None:intergenic 15.0%
!! GTCTATATATATAGATTAAA+AGG - chr7_3:68095586-68095605 Msa1119260:intron 15.0%
!! AGAAAATGTATAGATAATAA+AGG + chr7_3:68095722-68095741 None:intergenic 15.0%
!! ACAATATTATTAAGAAATGA+TGG + chr7_3:68095751-68095770 None:intergenic 15.0%
!! ATATAACTACAACAATTTAT+TGG - chr7_3:68096024-68096043 Msa1119260:intron 15.0%
!! AGAGATACAAATTAAAATTT+AGG + chr7_3:68097227-68097246 None:intergenic 15.0%
!!! TGAAATTACATTTTTATGTT+AGG + chr7_3:68097423-68097442 None:intergenic 15.0%
!!! TTTAAAGCCAAAATAATATT+AGG + chr7_3:68097626-68097645 None:intergenic 15.0%
!! TTAACATGTAATTAGATATA+TGG + chr7_3:68097754-68097773 None:intergenic 15.0%
!!! ATCTATGTATTTTATCAAAT+CGG - chr7_3:68098993-68099012 Msa1119260:five_prime_UTR 15.0%
!!! ATAGTACATGAAATTTTTTA+AGG + chr7_3:68099423-68099442 None:intergenic 15.0%
!! AAATATCTATATGAAAGAAA+AGG - chr7_3:68099451-68099470 Msa1119260:five_prime_UTR 15.0%
!! TTGATCTATTTATGATTATG+AGG + chr7_3:68094330-68094349 None:intergenic 20.0%
!! TCTATTCTATTTGAATTACT+GGG + chr7_3:68094359-68094378 None:intergenic 20.0%
!! TTCTATTCTATTTGAATTAC+TGG + chr7_3:68094360-68094379 None:intergenic 20.0%
!!! CTTTTAGGAAATTGATTTTA+TGG + chr7_3:68094563-68094582 None:intergenic 20.0%
!!! AAAAAGAAGTGATTTCTTTT+AGG + chr7_3:68094578-68094597 None:intergenic 20.0%
!!! TTCTGAAAAACAAACAAATT+TGG + chr7_3:68094781-68094800 None:intergenic 20.0%
!!! ATATTTTTCTCATTTTGAAG+AGG + chr7_3:68095162-68095181 None:intergenic 20.0%
!! CTTCAAAATGAGAAAAATAT+TGG - chr7_3:68095162-68095181 Msa1119260:intron 20.0%
!! AAAAAAAAATTATGCATGGT+CGG + chr7_3:68095430-68095449 None:intergenic 20.0%
!!! TTTTTTTTTTTGGTACAATG+AGG + chr7_3:68095522-68095541 None:intergenic 20.0%
!! TATATATAGATTAAAAGGCA+AGG - chr7_3:68095591-68095610 Msa1119260:intron 20.0%
!! ATATATAGATTAAAAGGCAA+GGG - chr7_3:68095592-68095611 Msa1119260:intron 20.0%
!! ATTATAACTTCAAATGATCA+AGG - chr7_3:68095903-68095922 Msa1119260:CDS 20.0%
!!! ATTTAAATTTTATCTGGAGT+TGG - chr7_3:68095938-68095957 Msa1119260:CDS 20.0%
!! TAATATATTGTGTACAAAAG+AGG + chr7_3:68096496-68096515 None:intergenic 20.0%
!! CAATATATTATGTTTAACTC+TGG - chr7_3:68096506-68096525 Msa1119260:intron 20.0%
!! AAAGTTATTTGAAGAACATT+TGG - chr7_3:68096722-68096741 Msa1119260:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr7_3:68096889-68096908 Msa1119260:intron 20.0%
!!! TTAAAATTTAGGCTTTGTTT+GGG + chr7_3:68097216-68097235 None:intergenic 20.0%
!!! ATTAAAATTTAGGCTTTGTT+TGG + chr7_3:68097217-68097236 None:intergenic 20.0%
!!! TAATTTTTGCGAAGAAATAT+AGG + chr7_3:68098593-68098612 None:intergenic 20.0%
!!! ACTTGAATTTTTTTTAGATG+TGG + chr7_3:68098634-68098653 None:intergenic 20.0%
!!! TTTCTCTATTTTGGTTTATT+GGG + chr7_3:68098875-68098894 None:intergenic 20.0%
!! TATAAAGAGTCAATTTCAAA+TGG - chr7_3:68099046-68099065 Msa1119260:five_prime_UTR 20.0%
!!! TACTTATTTTCCAAATCATT+TGG - chr7_3:68099217-68099236 Msa1119260:five_prime_UTR 20.0%
!! TTATGTTAACATCTTTCTTT+AGG - chr7_3:68099358-68099377 Msa1119260:five_prime_UTR 20.0%
! TATTTATGATTATGAGGATG+TGG + chr7_3:68094324-68094343 None:intergenic 25.0%
!! GATGTATTTAGCTTACAATA+AGG + chr7_3:68094462-68094481 None:intergenic 25.0%
! ATCAATGTGGATAAAGATTA+TGG + chr7_3:68094514-68094533 None:intergenic 25.0%
! AAAACAAACAAATTTGGTCA+AGG + chr7_3:68094775-68094794 None:intergenic 25.0%
! AAAGTGAAAACAAAACAAGT+TGG + chr7_3:68095118-68095137 None:intergenic 25.0%
!!! TTGTTTTGTTTTCACTTTCA+CGG - chr7_3:68095120-68095139 Msa1119260:intron 25.0%
! TTTCACGGTAAAGTAAATTA+TGG - chr7_3:68095135-68095154 Msa1119260:intron 25.0%
! TTCACGGTAAAGTAAATTAT+GGG - chr7_3:68095136-68095155 Msa1119260:intron 25.0%
! ATATATAGACTGTATTCTGT+TGG + chr7_3:68095576-68095595 None:intergenic 25.0%
! GTTGAGGAAAAATATAGAAA+GGG + chr7_3:68095841-68095860 None:intergenic 25.0%
! ACTACAACAATTTAGAGAAA+GGG + chr7_3:68095993-68096012 None:intergenic 25.0%
! AACTACAACAATTTAGAGAA+AGG + chr7_3:68095994-68096013 None:intergenic 25.0%
! CTATGATTAAGATCATATCA+GGG + chr7_3:68096249-68096268 None:intergenic 25.0%
! ACTATGATTAAGATCATATC+AGG + chr7_3:68096250-68096269 None:intergenic 25.0%
! TTATAGATGATCTTCATGTT+TGG - chr7_3:68096298-68096317 Msa1119260:intron 25.0%
!!! TTATCGATTTTACCCAAAAT+TGG + chr7_3:68096376-68096395 None:intergenic 25.0%
! ATAATCATCGACAAAAATTC+AGG + chr7_3:68096421-68096440 None:intergenic 25.0%
! AAAGTGAATATTACAGTTGA+AGG + chr7_3:68096681-68096700 None:intergenic 25.0%
! GAACTCAAAAATTGTATTGA+GGG + chr7_3:68097066-68097085 None:intergenic 25.0%
! ATAAAAAATCTCCCTCATTT+GGG + chr7_3:68097090-68097109 None:intergenic 25.0%
! AATAAAAAATCTCCCTCATT+TGG + chr7_3:68097091-68097110 None:intergenic 25.0%
! AAGAAAATTTGAAGGTCTTA+GGG + chr7_3:68097335-68097354 None:intergenic 25.0%
! AAAGAAAATTTGAAGGTCTT+AGG + chr7_3:68097336-68097355 None:intergenic 25.0%
! TTTGGCAAAAGAAAATTTGA+AGG + chr7_3:68097343-68097362 None:intergenic 25.0%
! TGTATAATGTATTGTTACGA+GGG + chr7_3:68097382-68097401 None:intergenic 25.0%
! ATGTATAATGTATTGTTACG+AGG + chr7_3:68097383-68097402 None:intergenic 25.0%
! AAGCCAAAATAATATTAGGA+AGG + chr7_3:68097622-68097641 None:intergenic 25.0%
!!! TGTTGATTTGAGAATAAGAA+GGG + chr7_3:68098352-68098371 None:intergenic 25.0%
!!! ATGTTGATTTGAGAATAAGA+AGG + chr7_3:68098353-68098372 None:intergenic 25.0%
!!! CATTTTGGTATTTGTTGTAA+TGG + chr7_3:68098484-68098503 None:intergenic 25.0%
! TGTTTATTCTACCAATATTC+TGG - chr7_3:68098713-68098732 Msa1119260:five_prime_UTR 25.0%
! TGTTCTAACAATAGATAGTA+TGG - chr7_3:68098742-68098761 Msa1119260:intron 25.0%
!! ATGAATCATTATTGATTGTG+TGG - chr7_3:68098785-68098804 Msa1119260:intron 25.0%
!!! TTCTCTATTTTGGTTTATTG+GGG + chr7_3:68098874-68098893 None:intergenic 25.0%
!!! CTTTCTCTATTTTGGTTTAT+TGG + chr7_3:68098876-68098895 None:intergenic 25.0%
! CAATAAACCAAAATAGAGAA+AGG - chr7_3:68098874-68098893 Msa1119260:five_prime_UTR 25.0%
!! TTGGTTCAAATTCTAGAAAA+AGG - chr7_3:68099122-68099141 Msa1119260:five_prime_UTR 25.0%
!! TTTGATGAATTCCATTGATT+GGG + chr7_3:68099172-68099191 None:intergenic 25.0%
!! TTTTGATGAATTCCATTGAT+TGG + chr7_3:68099173-68099192 None:intergenic 25.0%
!! TTATTTTCCAAATCATTTGG+AGG - chr7_3:68099220-68099239 Msa1119260:five_prime_UTR 25.0%
TTGATTGATGTTGAATCAAG+CGG + chr7_3:68094417-68094436 None:intergenic 30.0%
TGCAGTTATTTACATCAATG+TGG + chr7_3:68094527-68094546 None:intergenic 30.0%
AGTTGCTTAACTTTAGCATT+AGG - chr7_3:68094602-68094621 Msa1119260:three_prime_UTR 30.0%
ATTCGTTGTAAAATCAGTGA+GGG + chr7_3:68094689-68094708 None:intergenic 30.0%
!! ACTGATTTTACAACGAATGA+AGG - chr7_3:68094691-68094710 Msa1119260:CDS 30.0%
!! AATTTGTTGATTCTCATGTC+AGG + chr7_3:68094733-68094752 None:intergenic 30.0%
ACATGAGAATCAACAAATTC+AGG - chr7_3:68094734-68094753 Msa1119260:CDS 30.0%
!! TGTTTGTTTTTCAGAAGTTC+AGG - chr7_3:68094785-68094804 Msa1119260:intron 30.0%
AGAAATGCATCTATAAAAGC+CGG - chr7_3:68094827-68094846 Msa1119260:intron 30.0%
!! GTTTTGAACAAACAGTTTCT+CGG + chr7_3:68094926-68094945 None:intergenic 30.0%
TGAAAATGAGAACCAAAACA+AGG - chr7_3:68095011-68095030 Msa1119260:intron 30.0%
AATTTGTCACTGAAAAACTC+CGG - chr7_3:68095061-68095080 Msa1119260:intron 30.0%
AATGAGAAAAATATTGGGCT+TGG - chr7_3:68095168-68095187 Msa1119260:intron 30.0%
TCTATCAAAGAAATACTCGT+AGG + chr7_3:68095249-68095268 None:intergenic 30.0%
!! GGGAACAAAAAGTTTGTTTT+TGG - chr7_3:68095612-68095631 Msa1119260:intron 30.0%
CATCAATCAACAAAAGAATG+AGG + chr7_3:68095797-68095816 None:intergenic 30.0%
GGAAAAATATAGAAAGGGTA+AGG + chr7_3:68095836-68095855 None:intergenic 30.0%
CGTTGAGGAAAAATATAGAA+AGG + chr7_3:68095842-68095861 None:intergenic 30.0%
! TCTATATTTTTCCTCAACGA+AGG - chr7_3:68095843-68095862 Msa1119260:intron 30.0%
AATAAAACATACCTTCGTTG+AGG + chr7_3:68095857-68095876 None:intergenic 30.0%
CTACAACAATTTAGAGAAAG+GGG + chr7_3:68095992-68096011 None:intergenic 30.0%
AGATGGAAATCTAAATGGTA+AGG + chr7_3:68096050-68096069 None:intergenic 30.0%
AGACAAGATGGAAATCTAAA+TGG + chr7_3:68096055-68096074 None:intergenic 30.0%
ATCATTCGTTAACAATTGTC+TGG + chr7_3:68096086-68096105 None:intergenic 30.0%
TGAAGATATTACTCAAAACG+TGG - chr7_3:68096149-68096168 Msa1119260:intron 30.0%
TCCATGATTAATTCACAACA+TGG - chr7_3:68096178-68096197 Msa1119260:intron 30.0%
TCCATGTTGTGAATTAATCA+TGG + chr7_3:68096182-68096201 None:intergenic 30.0%
ATTATGTTTAACTCTGGTGT+TGG - chr7_3:68096512-68096531 Msa1119260:intron 30.0%
CATTATCACAAAACTCTTCA+AGG + chr7_3:68096656-68096675 None:intergenic 30.0%
GATAAAAGAAATACCATTCC+AGG + chr7_3:68096815-68096834 None:intergenic 30.0%
! GGTATTTCTTTTATCCACTA+AGG - chr7_3:68096820-68096839 Msa1119260:intron 30.0%
TCAAAAATTGTATTGAGGGA+GGG + chr7_3:68097062-68097081 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+AGG + chr7_3:68097067-68097086 None:intergenic 30.0%
TAAAAAATCTCCCTCATTTG+GGG + chr7_3:68097089-68097108 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr7_3:68097148-68097167 None:intergenic 30.0%
ACTTATTCAATAGTGTGAAC+TGG - chr7_3:68097501-68097520 Msa1119260:intron 30.0%
! CATGATTTTTGTCAATGTTG+AGG - chr7_3:68097550-68097569 Msa1119260:intron 30.0%
! AGGCCTTCCTAATATTATTT+TGG - chr7_3:68097616-68097635 Msa1119260:intron 30.0%
! ACAAATCCTTATTGATTGTG+TGG - chr7_3:68097653-68097672 Msa1119260:intron 30.0%
! TGTTACTTGCTCTTATTTGT+AGG - chr7_3:68097825-68097844 Msa1119260:intron 30.0%
AAGACATCAATATTCCTTGA+CGG + chr7_3:68098061-68098080 None:intergenic 30.0%
TTCATCAGTTGAACCTAAAA+TGG + chr7_3:68098392-68098411 None:intergenic 30.0%
TCTTCTTCACTAGATGTTAT+TGG + chr7_3:68098460-68098479 None:intergenic 30.0%
TATCATTGGAGTAAGTTTCT+TGG + chr7_3:68098558-68098577 None:intergenic 30.0%
AAGAAACTTACTCCAATGAT+AGG - chr7_3:68098557-68098576 Msa1119260:intron 30.0%
GAACAATAACTCCAGAATAT+TGG + chr7_3:68098727-68098746 None:intergenic 30.0%
! ATTCATTTTCTGATACTCTG+CGG - chr7_3:68098910-68098929 Msa1119260:five_prime_UTR 30.0%
AGTCAATTTCAAATGGTACA+AGG - chr7_3:68099053-68099072 Msa1119260:five_prime_UTR 30.0%
GTCAATTTCAAATGGTACAA+GGG - chr7_3:68099054-68099073 Msa1119260:five_prime_UTR 30.0%
TCAATTTCAAATGGTACAAG+GGG - chr7_3:68099055-68099074 Msa1119260:five_prime_UTR 30.0%
ATTTGAACCAAATTCTGACA+TGG + chr7_3:68099113-68099132 None:intergenic 30.0%
TCAATAGTAGAAGAAACTGA+TGG + chr7_3:68099322-68099341 None:intergenic 30.0%
TGATTGATGTTGAATCAAGC+GGG + chr7_3:68094416-68094435 None:intergenic 35.0%
! TTGGTGAGTTTGCTTTAACT+AGG + chr7_3:68094649-68094668 None:intergenic 35.0%
AAAATCAGTGAGGGAAAAGT+GGG + chr7_3:68094680-68094699 None:intergenic 35.0%
TAAAATCAGTGAGGGAAAAG+TGG + chr7_3:68094681-68094700 None:intergenic 35.0%
CATTCGTTGTAAAATCAGTG+AGG + chr7_3:68094690-68094709 None:intergenic 35.0%
TCTCATGTCAGGATTTACAA+TGG + chr7_3:68094722-68094741 None:intergenic 35.0%
GAGAGCTACAAACTTTCTTA+GGG + chr7_3:68094948-68094967 None:intergenic 35.0%
TGAGAGCTACAAACTTTCTT+AGG + chr7_3:68094949-68094968 None:intergenic 35.0%
!! TCTTCTTCATCACCTTGTTT+TGG + chr7_3:68095026-68095045 None:intergenic 35.0%
GATGAAGAAGAAAGAAAACC+TGG - chr7_3:68095035-68095054 Msa1119260:intron 35.0%
TTTCAGTGACAAATTCATCC+AGG + chr7_3:68095056-68095075 None:intergenic 35.0%
AATCAACAAAAGAATGAGGC+TGG + chr7_3:68095793-68095812 None:intergenic 35.0%
TAGAAAGGGTAAGGAATGAA+GGG + chr7_3:68095827-68095846 None:intergenic 35.0%
ATAGAAAGGGTAAGGAATGA+AGG + chr7_3:68095828-68095847 None:intergenic 35.0%
TAGATGATCTTCATGTTTGG+TGG - chr7_3:68096301-68096320 Msa1119260:intron 35.0%
AGATGATCTTCATGTTTGGT+GGG - chr7_3:68096302-68096321 Msa1119260:intron 35.0%
! TTGCTTGTTTCTTAGTTCAC+TGG - chr7_3:68096350-68096369 Msa1119260:intron 35.0%
! TTAGTTCACTGGCCAATTTT+GGG - chr7_3:68096361-68096380 Msa1119260:intron 35.0%
AAATCATATGACATCAGCTG+CGG - chr7_3:68096578-68096597 Msa1119260:intron 35.0%
!! TAAGGCTTTGTTTGAGAGTT+TGG - chr7_3:68096838-68096857 Msa1119260:intron 35.0%
CTCAAAAATTGTATTGAGGG+AGG + chr7_3:68097063-68097082 None:intergenic 35.0%
AAAAAATCTCCCTCATTTGG+GGG + chr7_3:68097088-68097107 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr7_3:68097145-68097164 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr7_3:68097149-68097168 None:intergenic 35.0%
AATATGGTAGGAAAAAAGGC+TGG + chr7_3:68097288-68097307 None:intergenic 35.0%
TGGGAATATGGTAGGAAAAA+AGG + chr7_3:68097292-68097311 None:intergenic 35.0%
AAATTTGAAGGTCTTAGGGT+AGG + chr7_3:68097331-68097350 None:intergenic 35.0%
! TTTCTTTTGCCAAAACATGC+AGG - chr7_3:68097349-68097368 Msa1119260:intron 35.0%
TCATGCATGACAAAAAACAC+AGG + chr7_3:68097535-68097554 None:intergenic 35.0%
! TGACTTGTGATCTAAGAACT+AGG - chr7_3:68097596-68097615 Msa1119260:intron 35.0%
TCTAGACCACACAATCAATA+AGG + chr7_3:68097662-68097681 None:intergenic 35.0%
! GATTGTGTGGTCTAGATTTT+TGG - chr7_3:68097666-68097685 Msa1119260:intron 35.0%
!!! GTGGTCTAGATTTTTGGTAT+AGG - chr7_3:68097672-68097691 Msa1119260:intron 35.0%
GTAGGATCTTTCAAGCTAAT+AGG + chr7_3:68097887-68097906 None:intergenic 35.0%
! ATTAGCTTGAAAGATCCTAC+TGG - chr7_3:68097887-68097906 Msa1119260:intron 35.0%
! TTAGCTTGAAAGATCCTACT+GGG - chr7_3:68097888-68097907 Msa1119260:intron 35.0%
CAATAGTCAAGAACTGTTTG+AGG - chr7_3:68098003-68098022 Msa1119260:intron 35.0%
TTAGCGATTGTTGCATCAAT+CGG - chr7_3:68098262-68098281 Msa1119260:intron 35.0%
TGATTTGAGAATAAGAAGGG+TGG + chr7_3:68098349-68098368 None:intergenic 35.0%
GAACCTAAAATGGATGAAGA+AGG + chr7_3:68098382-68098401 None:intergenic 35.0%
! GGACTTTCAGTTTGACATTT+TGG + chr7_3:68098499-68098518 None:intergenic 35.0%
AAACTTACTCCAATGATAGG+TGG - chr7_3:68098560-68098579 Msa1119260:intron 35.0%
! CTGATGACCTTTCTCTATTT+TGG + chr7_3:68098884-68098903 None:intergenic 35.0%
! GCAGAGTATCAGAAAATGAA+TGG + chr7_3:68098911-68098930 None:intergenic 35.0%
TTTCCAAATCATTTGGAGGA+TGG - chr7_3:68099224-68099243 Msa1119260:five_prime_UTR 35.0%
GGAAAAGTGGGTCATAAGTT+TGG + chr7_3:68094668-68094687 None:intergenic 40.0%
ATGTTGTTGCTCTAACGTTG+TGG - chr7_3:68095641-68095660 Msa1119260:intron 40.0%
TAACGTTGTGGAGATAAGGA+AGG - chr7_3:68095653-68095672 Msa1119260:intron 40.0%
AACGTTGTGGAGATAAGGAA+GGG - chr7_3:68095654-68095673 Msa1119260:intron 40.0%
AGAAAGGGTAAGGAATGAAG+GGG + chr7_3:68095826-68095845 None:intergenic 40.0%
CTGGAAAACAACAGACAAGA+TGG + chr7_3:68096067-68096086 None:intergenic 40.0%
! GATGATCTTCATGTTTGGTG+GGG - chr7_3:68096303-68096322 Msa1119260:intron 40.0%
! CTTAGTTCACTGGCCAATTT+TGG - chr7_3:68096360-68096379 Msa1119260:intron 40.0%
! ATGTTTAACTCTGGTGTTGG+TGG - chr7_3:68096515-68096534 Msa1119260:intron 40.0%
!! GTTGGTGGACTAATTGTCAA+AGG - chr7_3:68096530-68096549 Msa1119260:intron 40.0%
ATTGTCAAAGGCCTCAAAGA+TGG - chr7_3:68096542-68096561 Msa1119260:intron 40.0%
! TGTCATATGATTTTCCGCCT+TGG + chr7_3:68096571-68096590 None:intergenic 40.0%
ACTCTCAAACAAAGCCTTAG+TGG + chr7_3:68096837-68096856 None:intergenic 40.0%
!! GCTTTGTTTGAGAGTTTGGA+GGG - chr7_3:68096842-68096861 Msa1119260:intron 40.0%
! CTTTGTTTGAGAGTTTGGAG+GGG - chr7_3:68096843-68096862 Msa1119260:intron 40.0%
! TTGTATTGAGGGAGGGTTTT+GGG + chr7_3:68097055-68097074 None:intergenic 40.0%
! ATTGTATTGAGGGAGGGTTT+TGG + chr7_3:68097056-68097075 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG - chr7_3:68097075-68097094 Msa1119260:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG - chr7_3:68097076-68097095 Msa1119260:intron 40.0%
! GAGGGTTTTGCAAAAAAGGA+AGG + chr7_3:68097177-68097196 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr7_3:68097209-68097228 None:intergenic 40.0%
TTGCCAACACATAGGACATT+GGG + chr7_3:68097864-68097883 None:intergenic 40.0%
CTAATAGGTTGCCAACACAT+AGG + chr7_3:68097872-68097891 None:intergenic 40.0%
AAATTCATGACCAACCCAGT+AGG + chr7_3:68097905-68097924 None:intergenic 40.0%
CAGTAGAACAAGAGAGAAAG+TGG - chr7_3:68098026-68098045 Msa1119260:intron 40.0%
TAGAACAAGAGAGAAAGTGG+AGG - chr7_3:68098029-68098048 Msa1119260:intron 40.0%
AGAACAAGAGAGAAAGTGGA+GGG - chr7_3:68098030-68098049 Msa1119260:intron 40.0%
ATCCAAAACCTCCAAGAGTA+GGG + chr7_3:68098090-68098109 None:intergenic 40.0%
AATCCAAAACCTCCAAGAGT+AGG + chr7_3:68098091-68098110 None:intergenic 40.0%
TTTCGTTCAACAGCTACACA+TGG - chr7_3:68098198-68098217 Msa1119260:five_prime_UTR 40.0%
TTCGTTCAACAGCTACACAT+GGG - chr7_3:68098199-68098218 Msa1119260:five_prime_UTR 40.0%
! GCACCTTCTTCATCCATTTT+AGG - chr7_3:68098376-68098395 Msa1119260:intron 40.0%
GGTTCATAACCACCTATCAT+TGG + chr7_3:68098572-68098591 None:intergenic 40.0%
CATTGACACTGCATTGAGTT+TGG + chr7_3:68098937-68098956 None:intergenic 40.0%
AACTCAATGCAGTGTCAATG+AGG - chr7_3:68098937-68098956 Msa1119260:five_prime_UTR 40.0%
TTTCAAATGGTACAAGGGGT+TGG - chr7_3:68099059-68099078 Msa1119260:five_prime_UTR 40.0%
AGTTCGACCATGTCAGAATT+TGG - chr7_3:68099103-68099122 Msa1119260:five_prime_UTR 40.0%
GGGATGCACTAGCAATTATA+GGG + chr7_3:68099152-68099171 None:intergenic 40.0%
TGGGATGCACTAGCAATTAT+AGG + chr7_3:68099153-68099172 None:intergenic 40.0%
GAACCATCCTCCAAATGATT+TGG + chr7_3:68099230-68099249 None:intergenic 40.0%
AAACAGTTTCTCGGAATCGC+CGG + chr7_3:68094917-68094936 None:intergenic 45.0%
TTGTCACTGAAAAACTCCGG+CGG - chr7_3:68095064-68095083 Msa1119260:intron 45.0%
GATTAACTCAACTACTCGCC+CGG + chr7_3:68095096-68095115 None:intergenic 45.0%
GCTCTAACGTTGTGGAGATA+AGG - chr7_3:68095649-68095668 Msa1119260:intron 45.0%
GGAGGAAGGAGGATTTATCA+AGG - chr7_3:68095675-68095694 Msa1119260:intron 45.0%
CTCAAAGATGGAAACCAAGG+CGG - chr7_3:68096554-68096573 Msa1119260:intron 45.0%
!! GGCTTTGTTTGAGAGTTTGG+AGG - chr7_3:68096841-68096860 Msa1119260:intron 45.0%
TTTGAGAGTTTGGAGGGGAA+GGG - chr7_3:68096848-68096867 Msa1119260:intron 45.0%
! TGTATTGAGGGAGGGTTTTG+GGG + chr7_3:68097054-68097073 None:intergenic 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr7_3:68097139-68097158 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr7_3:68097140-68097159 None:intergenic 45.0%
GCAAAAAAGGAAGGAGCAAG+TGG + chr7_3:68097168-68097187 None:intergenic 45.0%
! AGGGGAGGGTTTTGCAAAAA+AGG + chr7_3:68097181-68097200 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr7_3:68097204-68097223 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr7_3:68097205-68097224 None:intergenic 45.0%
! TAGCTTGGTGGGAATATGGT+AGG + chr7_3:68097300-68097319 None:intergenic 45.0%
!! AGGTTTTGCACTAGCTTGGT+GGG + chr7_3:68097311-68097330 None:intergenic 45.0%
!! TAGGTTTTGCACTAGCTTGG+TGG + chr7_3:68097312-68097331 None:intergenic 45.0%
! GGATTGAGACCTGCATGTTT+TGG + chr7_3:68097361-68097380 None:intergenic 45.0%
AGGTCATTGTTCACTACCGT+TGG - chr7_3:68097570-68097589 Msa1119260:intron 45.0%
AGATCACAAGTCACGACCAA+CGG + chr7_3:68097589-68097608 None:intergenic 45.0%
GTTGCCAACACATAGGACAT+TGG + chr7_3:68097865-68097884 None:intergenic 45.0%
CTTGAAAGATCCTACTGGGT+TGG - chr7_3:68097892-68097911 Msa1119260:intron 45.0%
ATCGGAAGAACACACCATGT+TGG - chr7_3:68098280-68098299 Msa1119260:intron 45.0%
AACACACCATGTTGGTCGAA+GGG - chr7_3:68098288-68098307 Msa1119260:intron 45.0%
GGACAACAAATTCGACCATC+TGG - chr7_3:68098313-68098332 Msa1119260:intron 45.0%
CAAATTCGACCATCTGGTCA+TGG - chr7_3:68098319-68098338 Msa1119260:intron 45.0%
ACTGAAAGTCCCTCAACTTC+TGG - chr7_3:68098508-68098527 Msa1119260:intron 45.0%
ACGGTTGATCCAGAAGTTGA+GGG + chr7_3:68098520-68098539 None:intergenic 45.0%
AACTTCTGGATCAACCGTCA+CGG - chr7_3:68098522-68098541 Msa1119260:intron 45.0%
TCAACCGTCACGGAAACAAA+TGG - chr7_3:68098532-68098551 Msa1119260:intron 45.0%
TTGGCCATTTGTTTCCGTGA+CGG + chr7_3:68098539-68098558 None:intergenic 45.0%
!! TAGATGTGGTTCTAGCACAG+AGG + chr7_3:68098620-68098639 None:intergenic 45.0%
AAATGGTACAAGGGGTTGGA+AGG - chr7_3:68099063-68099082 Msa1119260:five_prime_UTR 45.0%
TGCTAGTGCATCCCAATCAA+TGG - chr7_3:68099158-68099177 Msa1119260:five_prime_UTR 45.0%
TCGGTTGATTGCTTCTATCG+TGG + chr7_3:68099252-68099271 None:intergenic 45.0%
!! CACTGGCTTCAACGCAATTT+CGG + chr7_3:68099271-68099290 None:intergenic 45.0%
! ATAAAAGCCGGTTTACGCGC+TGG - chr7_3:68094839-68094858 Msa1119260:intron 50.0%
! GGACGCAGAAGAAGTATGGT+AGG + chr7_3:68095228-68095247 None:intergenic 50.0%
CGTAGGACGCAGAAGAAGTA+TGG + chr7_3:68095232-68095251 None:intergenic 50.0%
GTTGTGGAGATAAGGAAGGG+AGG - chr7_3:68095657-68095676 Msa1119260:intron 50.0%
TGGAGATAAGGAAGGGAGGA+AGG - chr7_3:68095661-68095680 Msa1119260:intron 50.0%
AGATAAGGAAGGGAGGAAGG+AGG - chr7_3:68095664-68095683 Msa1119260:intron 50.0%
GGCCTCAAAGATGGAAACCA+AGG - chr7_3:68096551-68096570 Msa1119260:intron 50.0%
CGCCTTGGTTTCCATCTTTG+AGG + chr7_3:68096556-68096575 None:intergenic 50.0%
! TCAGCTGCGGCTTTTGTTGA+AGG - chr7_3:68096591-68096610 Msa1119260:intron 50.0%
TGTTATAGACCACCGCTTGC+CGG - chr7_3:68096766-68096785 Msa1119260:intron 50.0%
ATTGCAGGTGAAACTCGTGC+CGG + chr7_3:68096788-68096807 None:intergenic 50.0%
GTTTGAGAGTTTGGAGGGGA+AGG - chr7_3:68096847-68096866 Msa1119260:intron 50.0%
!!! TATTGAGGGAGGGTTTTGGG+GGG + chr7_3:68097052-68097071 None:intergenic 50.0%
!! GTATTGAGGGAGGGTTTTGG+GGG + chr7_3:68097053-68097072 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr7_3:68097206-68097225 None:intergenic 50.0%
! GCACTAGCTTGGTGGGAATA+TGG + chr7_3:68097304-68097323 None:intergenic 50.0%
! GGGTAGGTTTTGCACTAGCT+TGG + chr7_3:68097315-68097334 None:intergenic 50.0%
GCTCCCAATGTCCTATGTGT+TGG - chr7_3:68097858-68097877 Msa1119260:intron 50.0%
GTCTTTCATCGCCCTACTCT+TGG - chr7_3:68098076-68098095 Msa1119260:intron 50.0%
TTTCATCGCCCTACTCTTGG+AGG - chr7_3:68098079-68098098 Msa1119260:intron 50.0%
GAACACACCATGTTGGTCGA+AGG - chr7_3:68098287-68098306 Msa1119260:intron 50.0%
GACGGTTGATCCAGAAGTTG+AGG + chr7_3:68098521-68098540 None:intergenic 50.0%
!! ATGTGGTTCTAGCACAGAGG+AGG + chr7_3:68098617-68098636 None:intergenic 50.0%
GACAGCATTTGCAGTGTCGC+CGG - chr7_3:68094895-68094914 Msa1119260:CDS 55.0%
AAAACTCCGGCGGCGATTTC+CGG - chr7_3:68095074-68095093 Msa1119260:intron 55.0%
! GCTGCGGCTTTTGTTGAAGG+CGG - chr7_3:68096594-68096613 Msa1119260:intron 55.0%
GTTTCACCTGCAATGCGTCC+TGG - chr7_3:68096794-68096813 Msa1119260:intron 55.0%
ACCTGCAATGCGTCCTGGAA+TGG - chr7_3:68096799-68096818 Msa1119260:intron 55.0%
ACCATTCCAGGACGCATTGC+AGG + chr7_3:68096803-68096822 None:intergenic 55.0%
AGAGTTTGGAGGGGAAGGGA+GGG - chr7_3:68096852-68096871 Msa1119260:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG + chr7_3:68097042-68097061 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG + chr7_3:68097043-68097062 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr7_3:68097133-68097152 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr7_3:68097199-68097218 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr7_3:68097200-68097219 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr7_3:68097201-68097220 None:intergenic 55.0%
AGTGGAGGGTTACTCCGTCA+AGG - chr7_3:68098044-68098063 Msa1119260:intron 55.0%
! CGCCCTACTCTTGGAGGTTT+TGG - chr7_3:68098085-68098104 Msa1119260:intron 55.0%
CAGCTACACATGGGCGTCAA+TGG - chr7_3:68098208-68098227 Msa1119260:five_prime_UTR 55.0%
CACCATGTTGGTCGAAGGGA+AGG - chr7_3:68098292-68098311 Msa1119260:intron 55.0%
GTCCTTCCCTTCGACCAACA+TGG + chr7_3:68098297-68098316 None:intergenic 55.0%
GGTGGTTGACCATGACCAGA+TGG + chr7_3:68098331-68098350 None:intergenic 55.0%
GTACAAGGGGTTGGAAGGAG+AGG - chr7_3:68099068-68099087 Msa1119260:five_prime_UTR 55.0%
AAACTCCGGCGGCGATTTCC+GGG - chr7_3:68095075-68095094 Msa1119260:intron 60.0%
! GTGAAACTCGTGCCGGCAAG+CGG + chr7_3:68096781-68096800 None:intergenic 60.0%
GAGAGTTTGGAGGGGAAGGG+AGG - chr7_3:68096851-68096870 Msa1119260:intron 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr7_3:68096853-68096872 Msa1119260:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG + chr7_3:68097046-68097065 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr7_3:68097130-68097149 None:intergenic 60.0%
CGCGTGATGTGTCTTCGCAC+TGG + chr7_3:68099288-68099307 None:intergenic 60.0%
TCCTGCGCCAGCGCGTAAAC+CGG + chr7_3:68094849-68094868 None:intergenic 65.0%
! AAACTCGTGCCGGCAAGCGG+TGG + chr7_3:68096778-68096797 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr7_3:68096856-68096875 Msa1119260:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr7_3:68096857-68096876 Msa1119260:intron 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG - chr7_3:68096864-68096883 Msa1119260:intron 65.0%
GAAGGGAGGGGAGGGCTTTG+GGG - chr7_3:68096865-68096884 Msa1119260:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG - chr7_3:68096866-68096885 Msa1119260:intron 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr7_3:68097195-68097214 None:intergenic 65.0%
! GGTTTACGCGCTGGCGCAGG+AGG - chr7_3:68094848-68094867 Msa1119260:CDS 70.0%
! TTACGCGCTGGCGCAGGAGG+AGG - chr7_3:68094851-68094870 Msa1119260:CDS 70.0%
! TACGCGCTGGCGCAGGAGGA+GGG - chr7_3:68094852-68094871 Msa1119260:CDS 70.0%
ACTCGCCCGGAAATCGCCGC+CGG + chr7_3:68095083-68095102 None:intergenic 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG - chr7_3:68096863-68096882 Msa1119260:intron 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG - chr7_3:68096867-68096886 Msa1119260:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG - chr7_3:68096871-68096890 Msa1119260:intron 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr7_3:68097196-68097215 None:intergenic 70.0%
! GCCGGTTTACGCGCTGGCGC+AGG - chr7_3:68094845-68094864 Msa1119260:intron 75.0%
! ACGCGCTGGCGCAGGAGGAG+GGG - chr7_3:68094853-68094872 Msa1119260:CDS 75.0%
!! CGCGCTGGCGCAGGAGGAGG+GGG - chr7_3:68094854-68094873 Msa1119260:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 68094314 68099491 68094314 ID=Msa1119260;Name=Msa1119260
chr7_3 mRNA 68094314 68099491 68094314 ID=Msa1119260-mRNA-1;Parent=Msa1119260;Name=Msa1119260-mRNA-1;_AED=0.08;_eAED=0.08;_QI=919|1|1|1|0.6|0.54|11|344|327
chr7_3 exon 68094314 68094760 68094314 ID=Msa1119260-mRNA-1:exon:17011;Parent=Msa1119260-mRNA-1
chr7_3 exon 68094847 68094954 68094847 ID=Msa1119260-mRNA-1:exon:17010;Parent=Msa1119260-mRNA-1
chr7_3 exon 68095227 68095594 68095227 ID=Msa1119260-mRNA-1:exon:17009;Parent=Msa1119260-mRNA-1
chr7_3 exon 68095688 68095796 68095688 ID=Msa1119260-mRNA-1:exon:17008;Parent=Msa1119260-mRNA-1
chr7_3 exon 68095896 68095958 68095896 ID=Msa1119260-mRNA-1:exon:17007;Parent=Msa1119260-mRNA-1
chr7_3 exon 68096985 68097031 68096985 ID=Msa1119260-mRNA-1:exon:17006;Parent=Msa1119260-mRNA-1
chr7_3 exon 68097119 68097253 68097119 ID=Msa1119260-mRNA-1:exon:17005;Parent=Msa1119260-mRNA-1
chr7_3 exon 68097941 68098011 68097941 ID=Msa1119260-mRNA-1:exon:17004;Parent=Msa1119260-mRNA-1
chr7_3 exon 68098109 68098258 68098109 ID=Msa1119260-mRNA-1:exon:17003;Parent=Msa1119260-mRNA-1
chr7_3 exon 68098664 68098741 68098664 ID=Msa1119260-mRNA-1:exon:17002;Parent=Msa1119260-mRNA-1
chr7_3 exon 68098821 68099491 68098821 ID=Msa1119260-mRNA-1:exon:17001;Parent=Msa1119260-mRNA-1
chr7_3 five_prime_UTR 68098821 68099491 68098821 ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1
chr7_3 five_prime_UTR 68098664 68098741 68098664 ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1
chr7_3 five_prime_UTR 68098109 68098258 68098109 ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1
chr7_3 five_prime_UTR 68097992 68098011 68097992 ID=Msa1119260-mRNA-1:five_prime_utr;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68097941 68097991 68097941 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68097119 68097253 68097119 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68096985 68097031 68096985 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68095896 68095958 68095896 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68095688 68095796 68095688 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68095227 68095594 68095227 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68094847 68094954 68094847 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 CDS 68094658 68094760 68094658 ID=Msa1119260-mRNA-1:cds;Parent=Msa1119260-mRNA-1
chr7_3 three_prime_UTR 68094314 68094657 68094314 ID=Msa1119260-mRNA-1:three_prime_utr;Parent=Msa1119260-mRNA-1
Gene Sequence

>Msa1119260

ATGATTGTGCCCCTTCATTCCTTACCCTTTCTATATTTTTCCTCAACGAAGGCCTCAAAGATGGAAACCAAGGCGGAAAATCATATGACATCAGCTGCGGCTTTTGTTGAAGGCGGCATTCAAGAGTCTTGTGATGACGCTTGCAGCATATGCCTTGAAGAGTTTTGTGATAATGATCCTTCAACTACCACCGCTTGCCGGCACGAGTTTCACCTGCAATGCGTCCTGGAATGGTGTCAAAGAAGCTCCCAATGTCCTATGTGTTGGCAACCTATTAGCTTGAAAGATCCTACTGGTCAAGAACTGTTTGAGGCAGTAGAACAAGAGAGAAAGTGGAGGGTTACTCCGTCAAGGAATATTGATGTCTTTCATCGCCCTACTCTTGGAGGTTTTGGATTTCAACATCTACACATGGGCGTCAATGGTTCTTCTTTAGAAGAGCGATTGCTTCAAAATTTAGCGATTGTTGCATCAATCGGAAGAACACACCATGTTGGTCGAAGGGAAGGACAACAAATTCGACCATCTGGTCATGGTCAACCACCCTTCTTATTCTCAAATCAACATGTTGCACCTTCTTCATCCATTTTAGGTTCAACTGATGAAAGAGAAGACAATCTTAATGCAATTCATATGAGCAGTCAATCTACTCCAATAACATCTAGTGAAGAAGAACCATTACAACAAATACCAAAATGTCAAACTGAAAGTCCCTCAACTTCTGGATCAACCGTCACGGAAACAAATGGCCAAGAAACTTACTCCAATGATAGAGACTGTGTTGCTAATTCTTCCCCAATAAACCAAAATAGAGAAAGGTCATCAGAATTCCATTCATTTTCTGATACTCTGCGGTCCAAACTCAATGCAGTGTCAATGAGATATAAAGAGTCAATTTCAAATGGTACAAGGGGTTGGAAGGAGAGGTTGTTCTCTCGAAGTTCGACCATGTCAGAATTTGGTTCAAATTCTAGAAAAAGGTGA

Protein sequence

>Msa1119260

MIVPLHSLPFLYFSSTKASKMETKAENHMTSAAAFVEGGIQESCDDACSICLEEFCDNDPSTTTACRHEFHLQCVLEWCQRSSQCPMCWQPISLKDPTGQELFEAVEQERKWRVTPSRNIDVFHRPTLGGFGFQHLHMGVNGSSLEERLLQNLAIVASIGRTHHVGRREGQQIRPSGHGQPPFLFSNQHVAPSSSILGSTDEREDNLNAIHMSSQSTPITSSEEEPLQQIPKCQTESPSTSGSTVTETNGQETYSNDRDCVANSSPINQNRERSSEFHSFSDTLRSKLNAVSMRYKESISNGTRGWKERLFSRSSTMSEFGSNSRKR*